AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0046200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046200 MtrunA17_Chr1g0213031 94.196 224 12 1 1 224 1 223 1.62e-153 425
Msa0046200 MtrunA17_Chr1g0213021 89.189 222 24 0 5 226 4 225 5.48e-146 406
Msa0046200 MtrunA17_Chr1g0213011 61.538 221 85 0 6 226 2 222 9.05e-96 278
Msa0046200 MtrunA17_Chr1g0213051 51.598 219 104 1 5 221 2 220 7.22e-73 221
Msa0046200 MtrunA17_Chr1g0213041 49.528 212 105 1 9 218 6 217 7.81e-69 210
Msa0046200 MtrunA17_Chr7g0224381 45.238 168 92 0 5 172 2 169 1.11e-49 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0046200 AT3G55120.1 49.761 209 105 0 9 217 16 224 4.80e-67 207
Msa0046200 AT5G66230.2 45.205 219 111 2 9 226 6 216 1.68e-52 177
Msa0046200 AT5G66220.1 45.783 166 89 1 62 226 2 167 5.35e-43 143

Find 63 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACTTAGAGAAGCCTTTA+AGG 0.168675 1_1:+78247539 Msa0046200:CDS
TTCAGGTATTGTCTCATCTT+TGG 0.255423 1_1:-78247726 None:intergenic
GGTGGAGTTCATTGAATTTC+CGG 0.261011 1_1:+78243278 Msa0046200:CDS
CAAACACCAAATGGAACATT+AGG 0.304549 1_1:+78247600 Msa0046200:CDS
GTTAGAGGGTTAGATATTGA+TGG 0.330562 1_1:+78246841 Msa0046200:CDS
ATGTTCCTTCAGATTTCATA+TGG 0.333432 1_1:-78247488 None:intergenic
TCCTATTTCCTTGGTGGTGC+AGG 0.335100 1_1:+78243330 Msa0046200:CDS
GCCTGCTTTGAAAGAGAGTT+TGG 0.339202 1_1:+78247826 Msa0046200:CDS
TCTTTCAAAGCAGGCGAAAC+AGG 0.349240 1_1:-78247818 None:intergenic
TAATGGTATGTAGGGGTTAG+AGG 0.356611 1_1:+78246826 Msa0046200:intron
ACCTGCACCACCAAGGAAAT+AGG 0.361057 1_1:-78243331 None:intergenic
TTTGTGAAGTTCACTGTATT+AGG 0.371421 1_1:+78246868 Msa0046200:CDS
CACTGTATTAGGAGTTTACT+TGG 0.384450 1_1:+78246879 Msa0046200:CDS
ATAACAGCATACTCATGTTC+AGG 0.391503 1_1:-78247743 None:intergenic
AAGATTGACGACTTCAACAT+TGG 0.399504 1_1:+78247872 Msa0046200:CDS
TATAAACAACAAGCCGCTTT+CGG 0.408427 1_1:+78247763 Msa0046200:CDS
AAACACCAAATGGAACATTA+GGG 0.415014 1_1:+78247601 Msa0046200:CDS
CTAACCCCTAATGTTCCATT+TGG 0.420625 1_1:-78247606 None:intergenic
TTCTTCAGACAAACACCAAA+TGG 0.421941 1_1:+78247591 Msa0046200:CDS
CACCTTCACTCCAGTGATCA+TGG 0.422784 1_1:-78243259 None:intergenic
GGCTTCTCTAAGTTCTTGAA+TGG 0.424062 1_1:-78247532 None:intergenic
AGGAGTTTACTTGGAAGAAA+AGG 0.434965 1_1:+78246888 Msa0046200:CDS
ACCAAGTCCTATTTCCTTGG+TGG 0.442954 1_1:+78243324 Msa0046200:CDS
ATGAAATCTGAAGGAACATA+TGG 0.443450 1_1:+78247492 Msa0046200:CDS
TCCACCAAGTCCTATTTCCT+TGG 0.465024 1_1:+78243321 Msa0046200:CDS
GCCGCTTTCGGAGGCAGTGT+TGG 0.468906 1_1:+78247775 Msa0046200:CDS
AAATAGGACTTGGTGGATGA+TGG 0.479938 1_1:-78243315 None:intergenic
GTTCATTGAATTTCCGGCAG+TGG 0.480687 1_1:+78243284 Msa0046200:CDS
GATGGAGGTGTCACCACTGC+CGG 0.484240 1_1:-78243297 None:intergenic
AGGTAGTGAATATGTGAGAA+AGG 0.489997 1_1:+78247446 Msa0046200:CDS
TGATATCTCGGTAGAAATCA+AGG 0.490821 1_1:-78246969 None:intergenic
CATCGAATAAATTTCTCAAA+GGG 0.503134 1_1:-78247402 None:intergenic
AATGGTATGTAGGGGTTAGA+GGG 0.508598 1_1:+78246827 Msa0046200:intron
GCCAAACTCTCTTTCAAAGC+AGG 0.514705 1_1:-78247827 None:intergenic
AACAGGAATTTCTCCGGTCA+TGG 0.514747 1_1:-78247801 None:intergenic
ACAAAGGTGAGAACACTAGA+AGG 0.516764 1_1:+78247426 Msa0046200:CDS
AGGGATTCAAAGAGCTGAGA+TGG 0.521295 1_1:-78246949 None:intergenic
TGTTCCTTCAGATTTCATAT+GGG 0.526558 1_1:-78247487 None:intergenic
TAGCATCACTTACTCCTAAG+TGG 0.528607 1_1:+78246914 Msa0046200:CDS
GCAGCAGCATCCATGATCAC+TGG 0.535344 1_1:+78243249 Msa0046200:CDS
ACCAAGGAAATAGGACTTGG+TGG 0.536120 1_1:-78243322 None:intergenic
ATCACTTACTCCTAAGTGGA+AGG 0.541188 1_1:+78246918 Msa0046200:CDS
ACATCGAATAAATTTCTCAA+AGG 0.541800 1_1:-78247403 None:intergenic
ATCCATGATCACTGGAGTGA+AGG 0.543867 1_1:+78243257 Msa0046200:CDS
GGAGTCTTGCCCTTCCACTT+AGG 0.546270 1_1:-78246928 None:intergenic
TGGTACCTTTGATGATATCT+CGG 0.556629 1_1:-78246981 None:intergenic
CTGAAGAAAACACCAGCCCC+TGG 0.557559 1_1:-78247576 None:intergenic
CATGATCACTGGAGTGAAGG+TGG 0.559960 1_1:+78243260 Msa0046200:CDS
GCAGTGTTGGAGACCATGAC+CGG 0.572482 1_1:+78247788 Msa0046200:CDS
AGGCGAAACAGGAATTTCTC+CGG 0.576812 1_1:-78247807 None:intergenic
GAAATTTATTCGATGTACAA+AGG 0.580122 1_1:+78247410 Msa0046200:CDS
TCCAACACTGCCTCCGAAAG+CGG 0.582725 1_1:-78247776 None:intergenic
ACCACCAAGGAAATAGGACT+TGG 0.610116 1_1:-78243325 None:intergenic
TTCTACCGAGATATCATCAA+AGG 0.610658 1_1:+78246976 Msa0046200:CDS
ATTGCCCATATGAAATCTGA+AGG 0.611017 1_1:+78247483 Msa0046200:CDS
AAACAACAAGCCGCTTTCGG+AGG 0.621155 1_1:+78247766 Msa0046200:CDS
TAGGACTTGGTGGATGATGG+AGG 0.628115 1_1:-78243312 None:intergenic
GATATCTCGGTAGAAATCAA+GGG 0.631456 1_1:-78246968 None:intergenic
AAGAAAACACCAGCCCCTGG+TGG 0.637698 1_1:-78247573 None:intergenic
TCACTTACTCCTAAGTGGAA+GGG 0.638389 1_1:+78246919 Msa0046200:CDS
AAGAAATACCTGCACCACCA+AGG 0.648491 1_1:-78243338 None:intergenic
ATAGCTATAAGCTATGGCAA+AGG 0.662193 1_1:+78243227 None:intergenic
AACACCAAATGGAACATTAG+GGG 0.677472 1_1:+78247602 Msa0046200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTATTATTTTTT+GGG - chr1_1:78246059-78246078 None:intergenic 0.0%
!!! TTTTTATTATTATTATTTTT+TGG - chr1_1:78246060-78246079 None:intergenic 0.0%
!! TCTAATAATTAATATATAAC+AGG + chr1_1:78243976-78243995 Msa0046200:intron 10.0%
!!! AAAAATAAATCTTTTTTATG+AGG - chr1_1:78244158-78244177 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTCTTTT+TGG - chr1_1:78244748-78244767 None:intergenic 10.0%
!! ATCAAAACTTTATAAAAAAA+AGG + chr1_1:78245395-78245414 Msa0046200:intron 10.0%
!! TCAAAACTTTATAAAAAAAA+GGG + chr1_1:78245396-78245415 Msa0046200:intron 10.0%
!! AATTACAGATATAAAAAATA+AGG + chr1_1:78245853-78245872 Msa0046200:intron 10.0%
!! ATTACAGATATAAAAAATAA+GGG + chr1_1:78245854-78245873 Msa0046200:intron 10.0%
!!! TTTTATTGATCATTCTTTTT+AGG - chr1_1:78243905-78243924 None:intergenic 15.0%
!! TTATACATTAACAATCTAAT+AGG + chr1_1:78244267-78244286 Msa0046200:intron 15.0%
!! TATCAAAATATAATGTAATG+TGG - chr1_1:78244297-78244316 None:intergenic 15.0%
!!! AAACATTTTCTTCTTTTTTA+TGG - chr1_1:78244448-78244467 None:intergenic 15.0%
!! TCAAATATAAATATAAGTAG+CGG - chr1_1:78244915-78244934 None:intergenic 15.0%
!!! AGAACCTTTTTTTTTTTTTT+AGG + chr1_1:78244976-78244995 Msa0046200:intron 15.0%
!! CTTACCTAAAAAAAAAAAAA+AGG - chr1_1:78244983-78245002 None:intergenic 15.0%
!! CATCTTACATTATTATATAA+AGG - chr1_1:78245037-78245056 None:intergenic 15.0%
!!! ACAATAGTTTTTATTGATAT+GGG - chr1_1:78245294-78245313 None:intergenic 15.0%
!!! AACAATAGTTTTTATTGATA+TGG - chr1_1:78245295-78245314 None:intergenic 15.0%
!!! AAAAGAATATTTCTATTTCT+GGG - chr1_1:78245918-78245937 None:intergenic 15.0%
!!! TAAAAGAATATTTCTATTTC+TGG - chr1_1:78245919-78245938 None:intergenic 15.0%
!! TATGTCTAATTAAAAAATTG+AGG + chr1_1:78246275-78246294 Msa0046200:intron 15.0%
!! ATGTCTAATTAAAAAATTGA+GGG + chr1_1:78246276-78246295 Msa0046200:intron 15.0%
!!! TGATATTTTAATAAACCTTA+AGG + chr1_1:78246307-78246326 Msa0046200:intron 15.0%
!!! GATATTTTAATAAACCTTAA+GGG + chr1_1:78246308-78246327 Msa0046200:intron 15.0%
!!! AATTTTGATGGTTTTTTTTA+GGG - chr1_1:78246350-78246369 None:intergenic 15.0%
!! AATGTATACTCATTTATATA+TGG + chr1_1:78247367-78247386 Msa0046200:intron 15.0%
!! ATGTATACTCATTTATATAT+GGG + chr1_1:78247368-78247387 Msa0046200:intron 15.0%
!!! TTAAAATGTGTTGATTAAAT+TGG - chr1_1:78247668-78247687 None:intergenic 15.0%
!! AATCTTTAACAAATGTCATA+TGG + chr1_1:78243857-78243876 Msa0046200:intron 20.0%
!! ATCTTTAACAAATGTCATAT+GGG + chr1_1:78243858-78243877 Msa0046200:intron 20.0%
!! AAATCTTACTTTCATAAGTT+TGG - chr1_1:78244007-78244026 None:intergenic 20.0%
!! ATTATAGATAATTACAACGA+GGG + chr1_1:78244085-78244104 Msa0046200:intron 20.0%
!!! ATAAATCTTTTTTATGAGGT+CGG - chr1_1:78244154-78244173 None:intergenic 20.0%
!! AAACATACTTAAAGTAAGTT+TGG + chr1_1:78244718-78244737 Msa0046200:intron 20.0%
!!! ATGGATATTTTAAAAAGTCA+CGG + chr1_1:78244799-78244818 Msa0046200:intron 20.0%
!! ACTCTATTGATATTAATATG+AGG - chr1_1:78245091-78245110 None:intergenic 20.0%
!!! ACTGTTTTTTTAAAACTAGA+GGG - chr1_1:78245470-78245489 None:intergenic 20.0%
!! TTTACCTTAAATTCCTTTAA+CGG + chr1_1:78245600-78245619 Msa0046200:intron 20.0%
!! ATAGATATACAATCAAAAAC+TGG - chr1_1:78245826-78245845 None:intergenic 20.0%
!! TGTCTAATTAAAAAATTGAG+GGG + chr1_1:78246277-78246296 Msa0046200:intron 20.0%
!!! CAATTTTGATGGTTTTTTTT+AGG - chr1_1:78246351-78246370 None:intergenic 20.0%
!! ATAACCATGATTTATCTAAA+AGG + chr1_1:78246526-78246545 Msa0046200:intron 20.0%
!!! TTTTCCATGATTTTCATTTT+CGG - chr1_1:78246683-78246702 None:intergenic 20.0%
!! TGAAAATCATGGAAAAATAT+TGG + chr1_1:78246687-78246706 Msa0046200:intron 20.0%
!! GAAAATCATGGAAAAATATT+GGG + chr1_1:78246688-78246707 Msa0046200:intron 20.0%
!!! GATGTTTTTTTTATTGCTAA+TGG + chr1_1:78246809-78246828 Msa0046200:intron 20.0%
!! TATCATTATGTAGTATATGT+TGG - chr1_1:78247004-78247023 None:intergenic 20.0%
!! GATATTTAGATACATGAAAT+AGG - chr1_1:78247646-78247665 None:intergenic 20.0%
! TCTTTAACAAATGTCATATG+GGG + chr1_1:78243859-78243878 Msa0046200:intron 25.0%
! AAGTTCATCTATTAGTTAGA+GGG - chr1_1:78243951-78243970 None:intergenic 25.0%
! AAAGTTCATCTATTAGTTAG+AGG - chr1_1:78243952-78243971 None:intergenic 25.0%
! GATTATAGATAATTACAACG+AGG + chr1_1:78244084-78244103 Msa0046200:intron 25.0%
! TTAAGTATGTTTGATCTCAT+CGG - chr1_1:78244710-78244729 None:intergenic 25.0%
! CAATCCAATGCAAAATTTAA+CGG + chr1_1:78245211-78245230 Msa0046200:intron 25.0%
! TATTTACAGTCACATACAAT+AGG - chr1_1:78245334-78245353 None:intergenic 25.0%
! GTTGTTTAATAAAACCTCAA+GGG - chr1_1:78245438-78245457 None:intergenic 25.0%
!! TGTTGTTTAATAAAACCTCA+AGG - chr1_1:78245439-78245458 None:intergenic 25.0%
!!! TGTTTTTTTAAAACTAGAGG+GGG - chr1_1:78245468-78245487 None:intergenic 25.0%
!!! CTGTTTTTTTAAAACTAGAG+GGG - chr1_1:78245469-78245488 None:intergenic 25.0%
!!! GACTGTTTTTTTAAAACTAG+AGG - chr1_1:78245471-78245490 None:intergenic 25.0%
! TTACCTTAAATTCCTTTAAC+GGG + chr1_1:78245601-78245620 Msa0046200:intron 25.0%
! TTGAAATGAAAGTTACGTAA+TGG - chr1_1:78245630-78245649 None:intergenic 25.0%
!! CAAATGTAGAAAGTTTTTGT+TGG - chr1_1:78245997-78246016 None:intergenic 25.0%
! AAAAAAAAGAGGACATAACA+AGG + chr1_1:78246075-78246094 Msa0046200:intron 25.0%
! AATTTCAAGGGAAATATAGT+GGG + chr1_1:78246098-78246117 Msa0046200:intron 25.0%
!!! TTCTTCCTCAATTTTTGAAA+CGG - chr1_1:78246162-78246181 None:intergenic 25.0%
! GTCTAATTAAAAAATTGAGG+GGG + chr1_1:78246278-78246297 Msa0046200:intron 25.0%
!!! ATTTTAATAAACCTTAAGGG+AGG + chr1_1:78246311-78246330 Msa0046200:intron 25.0%
!! TCAACCTTTTAGATAAATCA+TGG - chr1_1:78246533-78246552 None:intergenic 25.0%
!! TTTTATTGCTAATGGTATGT+AGG + chr1_1:78246817-78246836 Msa0046200:intron 25.0%
! TTTATTGCTAATGGTATGTA+GGG + chr1_1:78246818-78246837 Msa0046200:intron 25.0%
! TTCCATAACATTATTGATGT+AGG + chr1_1:78247066-78247085 Msa0046200:intron 25.0%
! TTCCTACATCAATAATGTTA+TGG - chr1_1:78247071-78247090 None:intergenic 25.0%
! TTTATTGTCGACAAAAACTA+CGG + chr1_1:78247226-78247245 Msa0046200:intron 25.0%
! ACATGCTAACTATAATTCAT+TGG - chr1_1:78247268-78247287 None:intergenic 25.0%
! ATTTATATATGGGTGTGTTT+AGG + chr1_1:78247378-78247397 Msa0046200:intron 25.0%
! CATCGAATAAATTTCTCAAA+GGG - chr1_1:78247405-78247424 None:intergenic 25.0%
! ACATCGAATAAATTTCTCAA+AGG - chr1_1:78247406-78247425 None:intergenic 25.0%
! GAAATTTATTCGATGTACAA+AGG + chr1_1:78247410-78247429 Msa0046200:CDS 25.0%
! TGGAAAAAATTGAACCTTAA+AGG - chr1_1:78247556-78247575 None:intergenic 25.0%
! CTTATAATGTTTTCACTGCT+AGG + chr1_1:78243393-78243412 Msa0046200:intron 30.0%
CTGAACAATTCATAGTTCTT+TGG + chr1_1:78243680-78243699 Msa0046200:intron 30.0%
!! TGAATACACAGTTCTAAAGA+TGG - chr1_1:78243774-78243793 None:intergenic 30.0%
AACTCATATGGTGTTTAATC+TGG + chr1_1:78244049-78244068 Msa0046200:intron 30.0%
TTTAATCTGGTAAGTATGGT+GGG + chr1_1:78244062-78244081 Msa0046200:intron 30.0%
GTTTCGTGAGGAAATAATTT+GGG - chr1_1:78244597-78244616 None:intergenic 30.0%
TGTTTCGTGAGGAAATAATT+TGG - chr1_1:78244598-78244617 None:intergenic 30.0%
AAACTTACCTATCACTATCA+TGG + chr1_1:78244629-78244648 Msa0046200:intron 30.0%
!!! GCATGACTTTTTTAGTTGAA+TGG + chr1_1:78244780-78244799 Msa0046200:intron 30.0%
TAATATGAGGAAGATTTGTG+CGG - chr1_1:78245078-78245097 None:intergenic 30.0%
TCGTGAATGTTTCATGAATA+TGG + chr1_1:78245245-78245264 Msa0046200:intron 30.0%
AGGTAAAAATGCAAAAGCTA+CGG - chr1_1:78245587-78245606 None:intergenic 30.0%
AAACCCGTTAAAGGAATTTA+AGG - chr1_1:78245607-78245626 None:intergenic 30.0%
GACATAACAAGGAATTTCAA+GGG + chr1_1:78246086-78246105 Msa0046200:intron 30.0%
GAATTTCAAGGGAAATATAG+TGG + chr1_1:78246097-78246116 Msa0046200:intron 30.0%
! TCTTTCTTTTCTTTCTTCCA+CGG - chr1_1:78246129-78246148 None:intergenic 30.0%
ACAAGTGATTGAGTAGTATT+AGG - chr1_1:78246467-78246486 None:intergenic 30.0%
AGAGATCAATAAGTCATTAG+AGG - chr1_1:78246502-78246521 None:intergenic 30.0%
AACCCCTAAATCAAATATTG+AGG + chr1_1:78246597-78246616 Msa0046200:intron 30.0%
ACCCCTAAATCAAATATTGA+GGG + chr1_1:78246598-78246617 Msa0046200:intron 30.0%
! TCCCTCAATATTTGATTTAG+GGG - chr1_1:78246602-78246621 None:intergenic 30.0%
! GTCCCTCAATATTTGATTTA+GGG - chr1_1:78246603-78246622 None:intergenic 30.0%
! AGTCCCTCAATATTTGATTT+AGG - chr1_1:78246604-78246623 None:intergenic 30.0%
!!! TGATTGAAGCATTGCTTTTA+TGG + chr1_1:78246758-78246777 Msa0046200:intron 30.0%
TTATTGCTAATGGTATGTAG+GGG + chr1_1:78246819-78246838 Msa0046200:intron 30.0%
TTTGTGAAGTTCACTGTATT+AGG + chr1_1:78246868-78246887 Msa0046200:CDS 30.0%
ACAACTGCAAATGCAATTTA+AGG + chr1_1:78247308-78247327 Msa0046200:intron 30.0%
TGTTCCTTCAGATTTCATAT+GGG - chr1_1:78247490-78247509 None:intergenic 30.0%
ATGTTCCTTCAGATTTCATA+TGG - chr1_1:78247491-78247510 None:intergenic 30.0%
ATGAAATCTGAAGGAACATA+TGG + chr1_1:78247492-78247511 Msa0046200:CDS 30.0%
AAACACCAAATGGAACATTA+GGG + chr1_1:78247601-78247620 Msa0046200:CDS 30.0%
! CTTCAGTATCGAATTTAGTG+AGG + chr1_1:78243480-78243499 Msa0046200:intron 35.0%
! TGAGGTACCAAAATCCTTAA+CGG + chr1_1:78243498-78243517 Msa0046200:intron 35.0%
! CAAAATCCTTAACGGCTTTT+CGG + chr1_1:78243506-78243525 Msa0046200:intron 35.0%
TTTCGGCCTTACAAAATGTT+AGG + chr1_1:78243523-78243542 Msa0046200:intron 35.0%
TTCGGCCTTACAAAATGTTA+GGG + chr1_1:78243524-78243543 Msa0046200:intron 35.0%
GAAATAGTGTTCCATCACAA+CGG + chr1_1:78243550-78243569 Msa0046200:intron 35.0%
AAATAGTGTTCCATCACAAC+GGG + chr1_1:78243551-78243570 Msa0046200:intron 35.0%
TATTCTATATCCCGTTGTGA+TGG - chr1_1:78243564-78243583 None:intergenic 35.0%
! CTTCCTTTGAAGAACTCATA+TGG + chr1_1:78244037-78244056 Msa0046200:intron 35.0%
ACACCATATGAGTTCTTCAA+AGG - chr1_1:78244043-78244062 None:intergenic 35.0%
GGTGTTTAATCTGGTAAGTA+TGG + chr1_1:78244058-78244077 Msa0046200:intron 35.0%
GTTTAATCTGGTAAGTATGG+TGG + chr1_1:78244061-78244080 Msa0046200:intron 35.0%
TGAAGACGTAAGCATGAAAT+AGG - chr1_1:78244230-78244249 None:intergenic 35.0%
TTATTTCCTCACGAAACATC+AGG + chr1_1:78244600-78244619 Msa0046200:intron 35.0%
AGTAGCGGTGAAAATAAGTT+CGG - chr1_1:78244900-78244919 None:intergenic 35.0%
! ACACACAAGTGTATTTGTTG+CGG + chr1_1:78245155-78245174 Msa0046200:intron 35.0%
TGAGCGGATCATGATAAAAA+GGG - chr1_1:78245185-78245204 None:intergenic 35.0%
ATGAGCGGATCATGATAAAA+AGG - chr1_1:78245186-78245205 None:intergenic 35.0%
CATTGGATTGAATACATGAG+CGG - chr1_1:78245201-78245220 None:intergenic 35.0%
! GAAGCCGTTAAATTTTGCAT+TGG - chr1_1:78245218-78245237 None:intergenic 35.0%
AATTATATTGACCTCCCTTG+AGG + chr1_1:78245421-78245440 Msa0046200:intron 35.0%
GTTTAATAAAACCTCAAGGG+AGG - chr1_1:78245435-78245454 None:intergenic 35.0%
CTAACACCGTTAACTTTGAA+GGG - chr1_1:78245498-78245517 None:intergenic 35.0%
ACTAACACCGTTAACTTTGA+AGG - chr1_1:78245499-78245518 None:intergenic 35.0%
TCATGTGCTAAGAAGTTAAG+AGG - chr1_1:78245564-78245583 None:intergenic 35.0%
!! GCTTACACAAACTTGTTGAA+AGG - chr1_1:78245693-78245712 None:intergenic 35.0%
TCATGTTATCTTATGCCCTA+AGG + chr1_1:78245877-78245896 Msa0046200:intron 35.0%
CATGTTATCTTATGCCCTAA+GGG + chr1_1:78245878-78245897 Msa0046200:intron 35.0%
!! ACACATTAACTTGTGCCTTA+AGG + chr1_1:78246017-78246036 Msa0046200:intron 35.0%
!! CACATTAACTTGTGCCTTAA+GGG + chr1_1:78246018-78246037 Msa0046200:intron 35.0%
!! AATGTTAACTTGTGCCCTTA+AGG - chr1_1:78246035-78246054 None:intergenic 35.0%
GGACATAACAAGGAATTTCA+AGG + chr1_1:78246085-78246104 Msa0046200:intron 35.0%
TGCAAACAATGTAAACCAAG+AGG + chr1_1:78246213-78246232 Msa0046200:intron 35.0%
GCAAACAATGTAAACCAAGA+GGG + chr1_1:78246214-78246233 Msa0046200:intron 35.0%
CAAACAATGTAAACCAAGAG+GGG + chr1_1:78246215-78246234 Msa0046200:intron 35.0%
TATCACATTGAGGATTGAGT+AGG + chr1_1:78246245-78246264 Msa0046200:intron 35.0%
ATCACATTGAGGATTGAGTA+GGG + chr1_1:78246246-78246265 Msa0046200:intron 35.0%
!! TGTGGCTCTATCAATTTTGA+TGG - chr1_1:78246362-78246381 None:intergenic 35.0%
ACTGCCGAAAATGAAAATCA+TGG + chr1_1:78246676-78246695 Msa0046200:intron 35.0%
GTTAGAGGGTTAGATATTGA+TGG + chr1_1:78246841-78246860 Msa0046200:CDS 35.0%
CACTGTATTAGGAGTTTACT+TGG + chr1_1:78246879-78246898 Msa0046200:CDS 35.0%
AGGAGTTTACTTGGAAGAAA+AGG + chr1_1:78246888-78246907 Msa0046200:CDS 35.0%
GATATCTCGGTAGAAATCAA+GGG - chr1_1:78246971-78246990 None:intergenic 35.0%
TGATATCTCGGTAGAAATCA+AGG - chr1_1:78246972-78246991 None:intergenic 35.0%
TTCTACCGAGATATCATCAA+AGG + chr1_1:78246976-78246995 Msa0046200:CDS 35.0%
! TGGTACCTTTGATGATATCT+CGG - chr1_1:78246984-78247003 None:intergenic 35.0%
CTTGCACATATACTGTTGAA+TGG + chr1_1:78247195-78247214 Msa0046200:intron 35.0%
AGGTAGTGAATATGTGAGAA+AGG + chr1_1:78247446-78247465 Msa0046200:CDS 35.0%
ATTGCCCATATGAAATCTGA+AGG + chr1_1:78247483-78247502 Msa0046200:CDS 35.0%
AGAACTTAGAGAAGCCTTTA+AGG + chr1_1:78247539-78247558 Msa0046200:CDS 35.0%
!!! AAGGTTCAATTTTTTCCACC+AGG + chr1_1:78247558-78247577 Msa0046200:CDS 35.0%
!!! AGGTTCAATTTTTTCCACCA+GGG + chr1_1:78247559-78247578 Msa0046200:CDS 35.0%
TTCTTCAGACAAACACCAAA+TGG + chr1_1:78247591-78247610 Msa0046200:CDS 35.0%
CAAACACCAAATGGAACATT+AGG + chr1_1:78247600-78247619 Msa0046200:CDS 35.0%
AACACCAAATGGAACATTAG+GGG + chr1_1:78247602-78247621 Msa0046200:CDS 35.0%
! TTCAGGTATTGTCTCATCTT+TGG - chr1_1:78247729-78247748 None:intergenic 35.0%
ATAACAGCATACTCATGTTC+AGG - chr1_1:78247746-78247765 None:intergenic 35.0%
! TATAAACAACAAGCCGCTTT+CGG + chr1_1:78247763-78247782 Msa0046200:CDS 35.0%
AAGATTGACGACTTCAACAT+TGG + chr1_1:78247872-78247891 Msa0046200:CDS 35.0%
GGTGGAGTTCATTGAATTTC+CGG + chr1_1:78243278-78243297 Msa0046200:CDS 40.0%
!! AAATAGGACTTGGTGGATGA+TGG - chr1_1:78243318-78243337 None:intergenic 40.0%
TGACAGAATTTATGTGCGTC+GGG - chr1_1:78243451-78243470 None:intergenic 40.0%
GTGACAGAATTTATGTGCGT+CGG - chr1_1:78243452-78243471 None:intergenic 40.0%
! CGAAAAGCCGTTAAGGATTT+TGG - chr1_1:78243508-78243527 None:intergenic 40.0%
GCCTTACAAAATGTTAGGGA+GGG + chr1_1:78243528-78243547 Msa0046200:intron 40.0%
! TCCCTCCCTAACATTTTGTA+AGG - chr1_1:78243532-78243551 None:intergenic 40.0%
! AGAGGGAGTCAGTGAATTTT+AGG - chr1_1:78243934-78243953 None:intergenic 40.0%
! CACACAAGTGTATTTGTTGC+GGG + chr1_1:78245156-78245175 Msa0046200:intron 40.0%
GAGCGGATCATGATAAAAAG+GGG - chr1_1:78245184-78245203 None:intergenic 40.0%
TCACCTCCCTTCAAAGTTAA+CGG + chr1_1:78245489-78245508 Msa0046200:intron 40.0%
! ACGTAATGGAAACCCGTTAA+AGG - chr1_1:78245616-78245635 None:intergenic 40.0%
AGAGGGGAAATGAATTCGTT+TGG - chr1_1:78245745-78245764 None:intergenic 40.0%
GCAAAACTATGGTACTAGAG+GGG - chr1_1:78245761-78245780 None:intergenic 40.0%
GGCAAAACTATGGTACTAGA+GGG - chr1_1:78245762-78245781 None:intergenic 40.0%
TGGCAAAACTATGGTACTAG+AGG - chr1_1:78245763-78245782 None:intergenic 40.0%
!! CAAAGTGTTGTCACTACAGA+AGG - chr1_1:78245793-78245812 None:intergenic 40.0%
CTTCTGTAGTGACAACACTT+TGG + chr1_1:78245791-78245810 Msa0046200:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG - chr1_1:78245895-78245914 None:intergenic 40.0%
! TTCAAGGGAAATATAGTGGG+TGG + chr1_1:78246101-78246120 Msa0046200:intron 40.0%
! TGCTGCCGTTTCAAAAATTG+AGG + chr1_1:78246154-78246173 Msa0046200:intron 40.0%
TCACATTGAGGATTGAGTAG+GGG + chr1_1:78246247-78246266 Msa0046200:intron 40.0%
! AATTGCATTGACCTCCCTTA+AGG - chr1_1:78246325-78246344 None:intergenic 40.0%
TAATGGTATGTAGGGGTTAG+AGG + chr1_1:78246826-78246845 Msa0046200:intron 40.0%
AATGGTATGTAGGGGTTAGA+GGG + chr1_1:78246827-78246846 Msa0046200:intron 40.0%
TAGCATCACTTACTCCTAAG+TGG + chr1_1:78246914-78246933 Msa0046200:CDS 40.0%
ATCACTTACTCCTAAGTGGA+AGG + chr1_1:78246918-78246937 Msa0046200:CDS 40.0%
TCACTTACTCCTAAGTGGAA+GGG + chr1_1:78246919-78246938 Msa0046200:CDS 40.0%
ACAAAGGTGAGAACACTAGA+AGG + chr1_1:78247426-78247445 Msa0046200:CDS 40.0%
GGCTTCTCTAAGTTCTTGAA+TGG - chr1_1:78247535-78247554 None:intergenic 40.0%
!!! GGTTCAATTTTTTCCACCAG+GGG + chr1_1:78247560-78247579 Msa0046200:CDS 40.0%
CTAACCCCTAATGTTCCATT+TGG - chr1_1:78247609-78247628 None:intergenic 40.0%
ATCCATGATCACTGGAGTGA+AGG + chr1_1:78243257-78243276 Msa0046200:CDS 45.0%
GTTCATTGAATTTCCGGCAG+TGG + chr1_1:78243284-78243303 Msa0046200:CDS 45.0%
TCCACCAAGTCCTATTTCCT+TGG + chr1_1:78243321-78243340 Msa0046200:CDS 45.0%
ACCAAGGAAATAGGACTTGG+TGG - chr1_1:78243325-78243344 None:intergenic 45.0%
ACCAAGTCCTATTTCCTTGG+TGG + chr1_1:78243324-78243343 Msa0046200:CDS 45.0%
ACCACCAAGGAAATAGGACT+TGG - chr1_1:78243328-78243347 None:intergenic 45.0%
AAGAAATACCTGCACCACCA+AGG - chr1_1:78243341-78243360 None:intergenic 45.0%
GACAGAATTTATGTGCGTCG+GGG - chr1_1:78243450-78243469 None:intergenic 45.0%
GGCCTTACAAAATGTTAGGG+AGG + chr1_1:78243527-78243546 Msa0046200:intron 45.0%
! CCACACACCATGATAGTGAT+AGG - chr1_1:78244639-78244658 None:intergenic 45.0%
CCTATCACTATCATGGTGTG+TGG + chr1_1:78244636-78244655 Msa0046200:intron 45.0%
!!! TTGTGCGGTGCTACAGTTTT+GGG - chr1_1:78245063-78245082 None:intergenic 45.0%
!!! TTTGTGCGGTGCTACAGTTT+TGG - chr1_1:78245064-78245083 None:intergenic 45.0%
! ACACCGTTAACTTTGAAGGG+AGG - chr1_1:78245495-78245514 None:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG - chr1_1:78245896-78245915 None:intergenic 45.0%
!! AAATATAGTGGGTGGAACCG+TGG + chr1_1:78246109-78246128 Msa0046200:intron 45.0%
ACAATGTAAACCAAGAGGGG+AGG + chr1_1:78246218-78246237 Msa0046200:intron 45.0%
!! GGGAGGTGTTTATCACATTG+AGG + chr1_1:78246235-78246254 Msa0046200:intron 45.0%
CCACTGCATATGCACTTATG+TGG - chr1_1:78246380-78246399 None:intergenic 45.0%
CCACATAAGTGCATATGCAG+TGG + chr1_1:78246377-78246396 Msa0046200:intron 45.0%
AGGGATTCAAAGAGCTGAGA+TGG - chr1_1:78246952-78246971 None:intergenic 45.0%
AACAGGAATTTCTCCGGTCA+TGG - chr1_1:78247804-78247823 None:intergenic 45.0%
AGGCGAAACAGGAATTTCTC+CGG - chr1_1:78247810-78247829 None:intergenic 45.0%
TCTTTCAAAGCAGGCGAAAC+AGG - chr1_1:78247821-78247840 None:intergenic 45.0%
!! GCCTGCTTTGAAAGAGAGTT+TGG + chr1_1:78247826-78247845 Msa0046200:CDS 45.0%
GCCAAACTCTCTTTCAAAGC+AGG - chr1_1:78247830-78247849 None:intergenic 45.0%
!! TAAAAATATATAATTGAAAT+AGG - chr1_1:78244359-78244378 None:intergenic 5.0%
!!! TTTATTTTTTAAAAAAAACA+TGG + chr1_1:78244835-78244854 Msa0046200:intron 5.0%
!! ATAATAATAATAAAAAAAAG+AGG + chr1_1:78246064-78246083 Msa0046200:intron 5.0%
!!! GATTTTTTTATTTTTTTTTT+AGG - chr1_1:78246425-78246444 None:intergenic 5.0%
!! AAAAAATAAAACAAATTATT+AGG - chr1_1:78247034-78247053 None:intergenic 5.0%
CACCTTCACTCCAGTGATCA+TGG - chr1_1:78243262-78243281 None:intergenic 50.0%
CATGATCACTGGAGTGAAGG+TGG + chr1_1:78243260-78243279 Msa0046200:CDS 50.0%
!! TAGGACTTGGTGGATGATGG+AGG - chr1_1:78243315-78243334 None:intergenic 50.0%
!! TCCTATTTCCTTGGTGGTGC+AGG + chr1_1:78243330-78243349 Msa0046200:CDS 50.0%
ACCTGCACCACCAAGGAAAT+AGG - chr1_1:78243334-78243353 None:intergenic 50.0%
GTAAGGCCGAAAAGCCGTTA+AGG - chr1_1:78243515-78243534 None:intergenic 50.0%
TCGAGTCCTGATGTTTCGTG+AGG - chr1_1:78244609-78244628 None:intergenic 50.0%
TACTCTCCTGAGAGAGGTTG+TGG - chr1_1:78245128-78245147 None:intergenic 50.0%
TCGTGATACTCTCCTGAGAG+AGG - chr1_1:78245134-78245153 None:intergenic 50.0%
GGCGCATGATGGCAAAACTA+TGG - chr1_1:78245772-78245791 None:intergenic 50.0%
! TCACTACAGAAGGCGCATGA+TGG - chr1_1:78245783-78245802 None:intergenic 50.0%
GTGATAAACACCTCCCCTCT+TGG - chr1_1:78246231-78246250 None:intergenic 50.0%
CATTGAGGATTGAGTAGGGG+AGG + chr1_1:78246250-78246269 Msa0046200:intron 50.0%
!!! CAATTTTTTCCACCAGGGGC+TGG + chr1_1:78247564-78247583 Msa0046200:CDS 50.0%
! AAACAACAAGCCGCTTTCGG+AGG + chr1_1:78247766-78247785 Msa0046200:CDS 50.0%
GCAGCAGCATCCATGATCAC+TGG + chr1_1:78243249-78243268 Msa0046200:CDS 55.0%
ATGTCGCCACAACCTCTCTC+AGG + chr1_1:78245119-78245138 Msa0046200:intron 55.0%
GGAGTCTTGCCCTTCCACTT+AGG - chr1_1:78246931-78246950 None:intergenic 55.0%
AAGAAAACACCAGCCCCTGG+TGG - chr1_1:78247576-78247595 None:intergenic 55.0%
CTGAAGAAAACACCAGCCCC+TGG - chr1_1:78247579-78247598 None:intergenic 55.0%
TCCAACACTGCCTCCGAAAG+CGG - chr1_1:78247779-78247798 None:intergenic 55.0%
! GCAGTGTTGGAGACCATGAC+CGG + chr1_1:78247788-78247807 Msa0046200:CDS 55.0%
!! GATGGAGGTGTCACCACTGC+CGG - chr1_1:78243300-78243319 None:intergenic 60.0%
! GCCGCTTTCGGAGGCAGTGT+TGG + chr1_1:78247775-78247794 Msa0046200:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 78243240 78247901 78243240 ID=Msa0046200;Name=Msa0046200
chr1_1 mRNA 78243240 78247901 78243240 ID=Msa0046200-mRNA-1;Parent=Msa0046200;Name=Msa0046200-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|226
chr1_1 exon 78243240 78243351 78243240 ID=Msa0046200-mRNA-1:exon:26914;Parent=Msa0046200-mRNA-1
chr1_1 exon 78246839 78246997 78246839 ID=Msa0046200-mRNA-1:exon:26915;Parent=Msa0046200-mRNA-1
chr1_1 exon 78247400 78247623 78247400 ID=Msa0046200-mRNA-1:exon:26916;Parent=Msa0046200-mRNA-1
chr1_1 exon 78247716 78247901 78247716 ID=Msa0046200-mRNA-1:exon:26917;Parent=Msa0046200-mRNA-1
chr1_1 CDS 78243240 78243351 78243240 ID=Msa0046200-mRNA-1:cds;Parent=Msa0046200-mRNA-1
chr1_1 CDS 78246839 78246997 78246839 ID=Msa0046200-mRNA-1:cds;Parent=Msa0046200-mRNA-1
chr1_1 CDS 78247400 78247623 78247400 ID=Msa0046200-mRNA-1:cds;Parent=Msa0046200-mRNA-1
chr1_1 CDS 78247716 78247901 78247716 ID=Msa0046200-mRNA-1:cds;Parent=Msa0046200-mRNA-1
Gene Sequence

>Msa0046200

ATGGCAAAGGCAGCAGCATCCATGATCACTGGAGTGAAGGTGGAGTTCATTGAATTTCCGGCAGTGGTGACACCTCCATCATCCACCAAGTCCTATTTCCTTGGTGGTGCAGGGGTTAGAGGGTTAGATATTGATGGAGAGTTTGTGAAGTTCACTGTATTAGGAGTTTACTTGGAAGAAAAGGCTATAGCATCACTTACTCCTAAGTGGAAGGGCAAGACTCCATCTCAGCTCTTTGAATCCCTTGATTTCTACCGAGATATCATCAAAGGTCCCTTTGAGAAATTTATTCGATGTACAAAGGTGAGAACACTAGAAGGTAGTGAATATGTGAGAAAGGTATCAGAAAATTGCATTGCCCATATGAAATCTGAAGGAACATATGGCGATGCAGAAGAAAAAGCCATTCAAGAACTTAGAGAAGCCTTTAAGGTTCAATTTTTTCCACCAGGGGCTGGTGTTTTCTTCAGACAAACACCAAATGGAACATTAGGGCTTAGATTCTCCAAAGATGAGACAATACCTGAACATGAGTATGCTGTTATAAACAACAAGCCGCTTTCGGAGGCAGTGTTGGAGACCATGACCGGAGAAATTCCTGTTTCGCCTGCTTTGAAAGAGAGTTTGGCTACAAGATTTTGTGAGTTTATGAAGATTGACGACTTCAACATTGGAAACTGA

Protein sequence

>Msa0046200

MAKAAASMITGVKVEFIEFPAVVTPPSSTKSYFLGGAGVRGLDIDGEFVKFTVLGVYLEEKAIASLTPKWKGKTPSQLFESLDFYRDIIKGPFEKFIRCTKVRTLEGSEYVRKVSENCIAHMKSEGTYGDAEEKAIQELREAFKVQFFPPGAGVFFRQTPNGTLGLRFSKDETIPEHEYAVINNKPLSEAVLETMTGEIPVSPALKESLATRFCEFMKIDDFNIGN*