AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0742090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742090 MtrunA17_Chr5g0443541 78.764 259 16 2 1 220 1 259 1.18e-143 401
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0742090 AT1G06460.1 34.074 270 111 9 16 220 18 285 1.15e-34 125

Find 67 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCGAAAATTTATTTAAA+TGG 0.168326 5_1:+61900370 None:intergenic
AATCTATCTTTGTCTCTTTC+CGG 0.204653 5_1:-61904111 Msa0742090:five_prime_UTR
GAAACAAACATGAAACTTAA+AGG 0.232138 5_1:+61900332 None:intergenic
ATTACTGAGCTTCAAACTTT+AGG 0.239599 5_1:+61900639 None:intergenic
TCTCATCATTGGAAGCAAAA+TGG 0.248751 5_1:+61903887 None:intergenic
CAAAGACTTCACATAATAAA+TGG 0.249109 5_1:+61903977 None:intergenic
AAAGGATCCGGGGAGGTATT+TGG 0.250396 5_1:+61900350 None:intergenic
AGAATACACCATTCTGAAAT+TGG 0.251394 5_1:-61901989 Msa0742090:intron
GATTCTGCAACATCCATTCT+TGG 0.264287 5_1:+61901841 None:intergenic
ACGATTGATTCTTTCCTTGC+AGG 0.285486 5_1:+61902136 None:intergenic
TGCAGAATGTGGCACATATA+TGG 0.327959 5_1:+61904004 None:intergenic
CACGGCTCTCTTGCATAATT+AGG 0.328126 5_1:+61902169 None:intergenic
CCTTGTATATTCTGTTTGCT+TGG 0.343416 5_1:+61902034 None:intergenic
GTAGACGCTCTACTAGTTCT+TGG 0.370835 5_1:-61901468 Msa0742090:CDS
CTCATCATTGGAAGCAAAAT+GGG 0.380902 5_1:+61903888 None:intergenic
ATTTAAATGGTGTGAACAAA+CGG 0.398232 5_1:+61900383 None:intergenic
TATGAAGAAAATGAAGCATT+TGG 0.403591 5_1:+61901430 None:intergenic
TTTAAATGGTGTGAACAAAC+GGG 0.406303 5_1:+61900384 None:intergenic
GCTTAGGAGATGTGACAATA+AGG 0.409685 5_1:-61902600 Msa0742090:intron
CCACGTTAACTAGCTAGAAA+TGG 0.426131 5_1:-61903950 Msa0742090:exon
AACATGAAACTTAAAGGATC+CGG 0.426207 5_1:+61900338 None:intergenic
ATCTACCCATCTTCTGCCTA+TGG 0.436149 5_1:-61903860 Msa0742090:intron
GGTAGATGAAATCTCATCAT+TGG 0.447634 5_1:+61903876 None:intergenic
ATGGACCATATGAGGTTGTT+TGG 0.454708 5_1:-61901387 Msa0742090:CDS
AATTGAGTGGTCACCAAGAA+TGG 0.455876 5_1:-61901854 Msa0742090:CDS
TTCGATGTAAATAGTATGTC+CGG 0.462091 5_1:+61904092 None:intergenic
GTTATCATGGTAGAAGTTCC+TGG 0.470836 5_1:-61901805 Msa0742090:CDS
AGTGGCCAAACAACCTCATA+TGG 0.481163 5_1:+61901382 None:intergenic
ACATACTATTTACATCGAAT+AGG 0.487700 5_1:-61904088 Msa0742090:five_prime_UTR
AGATTACCATAGGCAGAAGA+TGG 0.487818 5_1:+61903854 None:intergenic
AGAAAGTAAATATGTTATCA+TGG 0.491749 5_1:-61901818 Msa0742090:CDS
ACCAATGTGGCTAAATATGA+AGG 0.493398 5_1:-61902193 Msa0742090:CDS
ATACTGTAATGAACATATGA+TGG 0.504498 5_1:-61900501 Msa0742090:three_prime_UTR
CACAAGAGGGAGATACTGTA+TGG 0.508140 5_1:-61901406 Msa0742090:CDS
GTAGTCTGAACTCTGTGCTT+AGG 0.510140 5_1:-61902616 Msa0742090:CDS
ACTAGTTCTTGGAGAGAAGC+AGG 0.514222 5_1:-61901457 Msa0742090:CDS
ACATGAAACTTAAAGGATCC+GGG 0.522278 5_1:+61900339 None:intergenic
TTGTTCACACGAGGAGGAAG+TGG 0.523682 5_1:+61901364 None:intergenic
GATACTGTATGGACCATATG+AGG 0.529593 5_1:-61901395 Msa0742090:CDS
ACCTTCATATTTAGCCACAT+TGG 0.536522 5_1:+61902192 None:intergenic
CCAAGCAAACAGAATATACA+AGG 0.537645 5_1:-61902034 Msa0742090:CDS
CTTGCAGGTCTTGCAAAACA+CGG 0.542709 5_1:+61902151 None:intergenic
TTTGCCGATCATAGTAGAGT+TGG 0.548138 5_1:-61900599 Msa0742090:three_prime_UTR
ATACTATATATATACACGAT+TGG 0.564363 5_1:+61900522 None:intergenic
GCTAATCACCAATTTCAGAA+TGG 0.565371 5_1:+61901981 None:intergenic
GCTAGAAATGGAGAATGAGT+TGG 0.569649 5_1:-61903938 Msa0742090:exon
TTGCTTGGCCTAGAAAATGA+AGG 0.570216 5_1:+61902049 None:intergenic
ACTTCCTCCTCGTGTGAACA+AGG 0.571990 5_1:-61901362 Msa0742090:CDS
ATTGCCAACTCTACTATGAT+CGG 0.578353 5_1:+61900595 None:intergenic
CCATTTCTAGCTAGTTAACG+TGG 0.587217 5_1:+61903950 None:intergenic
TAAATGGATAATGCAGAATG+TGG 0.600331 5_1:+61903993 None:intergenic
GAATGTGGCACATATATGGA+GGG 0.604477 5_1:+61904008 None:intergenic
GATTACCATAGGCAGAAGAT+GGG 0.610033 5_1:+61903855 None:intergenic
AGAATGTGGCACATATATGG+AGG 0.619726 5_1:+61904007 None:intergenic
CAACCAATGACTAAAATGCA+AGG 0.630284 5_1:-61902097 Msa0742090:CDS
TTGTCCTTGTTCACACGAGG+AGG 0.635624 5_1:+61901358 None:intergenic
ATGTCACCAACACTGACACC+AGG 0.643081 5_1:+61901787 None:intergenic
CTTGGCCTAGAAAATGAAGG+TGG 0.645955 5_1:+61902052 None:intergenic
TGAACAGAAAATGTCTACAC+AGG 0.650350 5_1:-61900447 Msa0742090:three_prime_UTR
AATGTGGCACATATATGGAG+GGG 0.651025 5_1:+61904009 None:intergenic
TTAAATGGTGTGAACAAACG+GGG 0.653710 5_1:+61900385 None:intergenic
CATGAAACTTAAAGGATCCG+GGG 0.659118 5_1:+61900340 None:intergenic
TCTCCCTATCAGAATTGCAG+TGG 0.660004 5_1:-61902638 Msa0742090:intron
ACATTGTCCTTGTTCACACG+AGG 0.684915 5_1:+61901355 None:intergenic
TATTATAGTCTACATGACAA+CGG 0.700822 5_1:+61900408 None:intergenic
TGTTGCTCCTAAAACCAATG+TGG 0.717404 5_1:-61902206 Msa0742090:CDS
GAAACTTAAAGGATCCGGGG+AGG 0.748546 5_1:+61900343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAATATTCAATAAAATA+AGG - chr5_1:61900912-61900931 Msa0742090:intron 10.0%
!!! AATTATGATCATTTTGAAAA+AGG + chr5_1:61901561-61901580 None:intergenic 15.0%
!!! TTTTTCAAAATGATCATAAT+TGG - chr5_1:61901560-61901579 Msa0742090:intron 15.0%
!! TGTAATTATTAACTTTACAT+CGG - chr5_1:61902145-61902164 Msa0742090:CDS 15.0%
!! TGATTACAAGTTATAATATA+TGG - chr5_1:61902479-61902498 Msa0742090:intron 15.0%
!! AAATGACTAAAAATTAATTG+AGG - chr5_1:61903389-61903408 Msa0742090:intron 15.0%
!!! ATTTTTATTAGAATTTGAGT+TGG - chr5_1:61903545-61903564 Msa0742090:intron 15.0%
!!! CATCTAATAAAATAATTTTG+AGG + chr5_1:61903582-61903601 None:intergenic 15.0%
!!! CAAAATTATTTTATTAGATG+AGG - chr5_1:61903582-61903601 Msa0742090:intron 15.0%
!!! ACACCATTTAAATAAATTTT+CGG - chr5_1:61904043-61904062 Msa0742090:five_prime_UTR 15.0%
!!! ATAGATCCTTTAAATTTTTA+AGG - chr5_1:61904109-61904128 Msa0742090:five_prime_UTR 15.0%
!! AAGTGTATATCTTGTATTAA+TGG - chr5_1:61900661-61900680 Msa0742090:CDS 20.0%
!! AATGGTGATATTTATAACTT+TGG - chr5_1:61900679-61900698 Msa0742090:intron 20.0%
!! AATATGGAAATTCTGAATTA+GGG + chr5_1:61900817-61900836 None:intergenic 20.0%
!! ATAGCTCACTATATTTATTT+AGG - chr5_1:61901341-61901360 Msa0742090:CDS 20.0%
!!! TTTTTATTGTCTGATTAAGA+AGG + chr5_1:61901587-61901606 None:intergenic 20.0%
!! ATCAAAAATAGGATAACAAT+TGG + chr5_1:61901718-61901737 None:intergenic 20.0%
!! AAAATACCGAAATTGAAATT+TGG + chr5_1:61902017-61902036 None:intergenic 20.0%
!!! AATATATGGTTAGCTAAATA+TGG - chr5_1:61902493-61902512 Msa0742090:intron 20.0%
!! AGAAAGTAAATATGTTATCA+TGG - chr5_1:61902598-61902617 Msa0742090:intron 20.0%
!! TTAGAAGATGAAATAAATAG+AGG + chr5_1:61903189-61903208 None:intergenic 20.0%
!!! ATTTTTACTTTTCTACTTTC+AGG + chr5_1:61903228-61903247 None:intergenic 20.0%
!! TGAAAGTAGAAAAGTAAAAA+TGG - chr5_1:61903227-61903246 Msa0742090:intron 20.0%
!! ATACTATATATATACACGAT+TGG + chr5_1:61903897-61903916 None:intergenic 20.0%
!! CTGAAACCTTAAAAATTTAA+AGG + chr5_1:61904118-61904137 None:intergenic 20.0%
! ACATACTATTTACATCGAAT+AGG - chr5_1:61900328-61900347 Msa0742090:three_prime_UTR 25.0%
! GACAAAAAAAAATCGTAAGT+GGG + chr5_1:61900355-61900374 None:intergenic 25.0%
! TGACAAAAAAAAATCGTAAG+TGG + chr5_1:61900356-61900375 None:intergenic 25.0%
! CAAAGACTTCACATAATAAA+TGG + chr5_1:61900442-61900461 None:intergenic 25.0%
! ATGATAGATTAGATTACCAT+AGG + chr5_1:61900575-61900594 None:intergenic 25.0%
! GAATATGGAAATTCTGAATT+AGG + chr5_1:61900818-61900837 None:intergenic 25.0%
! GAAACAAGAAACAAAATTAG+AGG + chr5_1:61900894-61900913 None:intergenic 25.0%
! CAAAAACATATATTGCTTGA+TGG + chr5_1:61900956-61900975 None:intergenic 25.0%
!!! TTTTCTGAAATGGATCAAAT+TGG + chr5_1:61901647-61901666 None:intergenic 25.0%
! TAATTATCCTATTAGAAACC+AGG - chr5_1:61901684-61901703 Msa0742090:intron 25.0%
! AATTATCCTATTAGAAACCA+GGG - chr5_1:61901685-61901704 Msa0742090:intron 25.0%
!!! AATAGGATAACAATTGGTTT+TGG + chr5_1:61901712-61901731 None:intergenic 25.0%
! GAAACAGATTCATCAAAAAT+AGG + chr5_1:61901729-61901748 None:intergenic 25.0%
! TGATTGATGAACAAACAATT+TGG + chr5_1:61901751-61901770 None:intergenic 25.0%
! ATACATAAGAGCAATGAATT+TGG + chr5_1:61902114-61902133 None:intergenic 25.0%
!! ATTTAGTACTACGAATTTTC+AGG - chr5_1:61902171-61902190 Msa0742090:CDS 25.0%
!! TTTAGTACTACGAATTTTCA+GGG - chr5_1:61902172-61902191 Msa0742090:CDS 25.0%
! TTGCAATTTATGGTACTATT+AGG - chr5_1:61902859-61902878 Msa0742090:intron 25.0%
!! TATGAAGAAAATGAAGCATT+TGG + chr5_1:61902989-61903008 None:intergenic 25.0%
!! ATTTTCTTCATATCACAAGA+GGG - chr5_1:61902997-61903016 Msa0742090:intron 25.0%
!!! ATATTTTAGTTTTGCTCACA+TGG - chr5_1:61903106-61903125 Msa0742090:intron 25.0%
! TGACTAAAAATTAATTGAGG+TGG - chr5_1:61903392-61903411 Msa0742090:intron 25.0%
! TTAAGTTCTTAATATGCATG+AGG + chr5_1:61903422-61903441 None:intergenic 25.0%
! TTGTCTATGTATATATACGT+TGG - chr5_1:61903690-61903709 Msa0742090:intron 25.0%
!!! TTGTTTCTTTTTGCATTTTC+AGG - chr5_1:61903730-61903749 Msa0742090:intron 25.0%
!! TGTTTCTTTTTGCATTTTCA+GGG - chr5_1:61903731-61903750 Msa0742090:intron 25.0%
! ATACTGTAATGAACATATGA+TGG - chr5_1:61903915-61903934 Msa0742090:CDS 25.0%
! TATTATAGTCTACATGACAA+CGG + chr5_1:61904011-61904030 None:intergenic 25.0%
! ATTTAAATGGTGTGAACAAA+CGG + chr5_1:61904036-61904055 None:intergenic 25.0%
! TGGCCGAAAATTTATTTAAA+TGG + chr5_1:61904049-61904068 None:intergenic 25.0%
! GAAACAAACATGAAACTTAA+AGG + chr5_1:61904087-61904106 None:intergenic 25.0%
AATCTATCTTTGTCTCTTTC+CGG - chr5_1:61900305-61900324 Msa0742090:three_prime_UTR 30.0%
TTCGATGTAAATAGTATGTC+CGG + chr5_1:61900327-61900346 None:intergenic 30.0%
TAAATGGATAATGCAGAATG+TGG + chr5_1:61900426-61900445 None:intergenic 30.0%
AATTCCCAATCTTGAACTTA+GGG + chr5_1:61900776-61900795 None:intergenic 30.0%
AAATTCCCAATCTTGAACTT+AGG + chr5_1:61900777-61900796 None:intergenic 30.0%
ATAATAGCAAGTGCAGAATA+TGG + chr5_1:61900833-61900852 None:intergenic 30.0%
! TTTGTGCATGTTTGAAATCA+CGG - chr5_1:61900972-61900991 Msa0742090:intron 30.0%
! TTTTTGATGCTTCAAAGTGT+TGG - chr5_1:61901020-61901039 Msa0742090:intron 30.0%
TTACACGAATTATGTGACTA+TGG + chr5_1:61901071-61901090 None:intergenic 30.0%
TCACATAATTCGTGTAATCA+AGG - chr5_1:61901074-61901093 Msa0742090:intron 30.0%
CACATAATTCGTGTAATCAA+GGG - chr5_1:61901075-61901094 Msa0742090:intron 30.0%
GAAACTTGGTAGAAGAAATT+AGG - chr5_1:61901297-61901316 Msa0742090:intron 30.0%
GTATTATTACTACTACGAAC+CGG - chr5_1:61901363-61901382 Msa0742090:CDS 30.0%
TATTATTACTACTACGAACC+GGG - chr5_1:61901364-61901383 Msa0742090:CDS 30.0%
!! TAATTATTGCTTTTGTTCCC+TGG + chr5_1:61901670-61901689 None:intergenic 30.0%
GTATTCATCAATAAGAACAG+TGG + chr5_1:61901913-61901932 None:intergenic 30.0%
GATGGTCCAAATTTCAATTT+CGG - chr5_1:61902008-61902027 Msa0742090:CDS 30.0%
AGTTGGAATATGCAATTTCA+TGG + chr5_1:61902082-61902101 None:intergenic 30.0%
!!! TATTTAGCCACATTGGTTTT+AGG + chr5_1:61902220-61902239 None:intergenic 30.0%
!! AGAATACACCATTCTGAAAT+TGG - chr5_1:61902427-61902446 Msa0742090:intron 30.0%
TCCTGTAAAAGGGAAAAAAA+GGG + chr5_1:61902543-61902562 None:intergenic 30.0%
TTCCTGTAAAAGGGAAAAAA+AGG + chr5_1:61902544-61902563 None:intergenic 30.0%
! CATTTTCTTCATATCACAAG+AGG - chr5_1:61902996-61903015 Msa0742090:intron 30.0%
! AATGAAAGGAACTTGTTTCT+AGG + chr5_1:61903345-61903364 None:intergenic 30.0%
ATTACTGAGCTTCAAACTTT+AGG + chr5_1:61903780-61903799 None:intergenic 30.0%
TTTAAATGGTGTGAACAAAC+GGG + chr5_1:61904035-61904054 None:intergenic 30.0%
AACATGAAACTTAAAGGATC+CGG + chr5_1:61904081-61904100 None:intergenic 30.0%
CTCATCATTGGAAGCAAAAT+GGG + chr5_1:61900531-61900550 None:intergenic 35.0%
TCTCATCATTGGAAGCAAAA+TGG + chr5_1:61900532-61900551 None:intergenic 35.0%
GGTAGATGAAATCTCATCAT+TGG + chr5_1:61900543-61900562 None:intergenic 35.0%
AATCACCCTAAGTTCAAGAT+TGG - chr5_1:61900768-61900787 Msa0742090:intron 35.0%
ATCACCCTAAGTTCAAGATT+GGG - chr5_1:61900769-61900788 Msa0742090:intron 35.0%
CGAATTATGTGACTATGGTT+TGG + chr5_1:61901066-61901085 None:intergenic 35.0%
!!! CCTTTTTTTCAACCAATCAG+CGG + chr5_1:61901194-61901213 None:intergenic 35.0%
AAATGAATCACCATGAGTTG+AGG - chr5_1:61901236-61901255 Msa0742090:intron 35.0%
! AATGAATCACCATGAGTTGA+GGG - chr5_1:61901237-61901256 Msa0742090:intron 35.0%
AGAAGAACATGAACAAAGAG+TGG - chr5_1:61901267-61901286 Msa0742090:intron 35.0%
ATTATTACTACTACGAACCG+GGG - chr5_1:61901365-61901384 Msa0742090:CDS 35.0%
AGAAGAATTCGGTACGTATA+GGG + chr5_1:61901409-61901428 None:intergenic 35.0%
AACCAGAGATCAAAAGAGTA+TGG - chr5_1:61901614-61901633 Msa0742090:intron 35.0%
TTGATCCATTTCAGAAAACC+AGG - chr5_1:61901649-61901668 Msa0742090:intron 35.0%
TGATCCATTTCAGAAAACCA+GGG - chr5_1:61901650-61901669 Msa0742090:intron 35.0%
!! CTTCCTTTGGTCATTTTATG+AGG - chr5_1:61901863-61901882 Msa0742090:intron 35.0%
ATACTCCTCAATATTGCTCT+TGG - chr5_1:61901929-61901948 Msa0742090:intron 35.0%
CATATCCAAGAGCAATATTG+AGG + chr5_1:61901937-61901956 None:intergenic 35.0%
CTCAATATTGCTCTTGGATA+TGG - chr5_1:61901935-61901954 Msa0742090:intron 35.0%
ACTGCTCGATATTGATAGAA+TGG - chr5_1:61902039-61902058 Msa0742090:CDS 35.0%
ACCAATGTGGCTAAATATGA+AGG - chr5_1:61902223-61902242 Msa0742090:CDS 35.0%
ACCTTCATATTTAGCCACAT+TGG + chr5_1:61902227-61902246 None:intergenic 35.0%
!! CTTGCATTTTAGTCATTGGT+TGG + chr5_1:61902321-61902340 None:intergenic 35.0%
CAACCAATGACTAAAATGCA+AGG - chr5_1:61902319-61902338 Msa0742090:intron 35.0%
!! TAGCCTTGCATTTTAGTCAT+TGG + chr5_1:61902325-61902344 None:intergenic 35.0%
CCTTGTATATTCTGTTTGCT+TGG + chr5_1:61902385-61902404 None:intergenic 35.0%
CCAAGCAAACAGAATATACA+AGG - chr5_1:61902382-61902401 Msa0742090:intron 35.0%
GCTAATCACCAATTTCAGAA+TGG + chr5_1:61902438-61902457 None:intergenic 35.0%
CCTGTAAAAGGGAAAAAAAG+GGG + chr5_1:61902542-61902561 None:intergenic 35.0%
ACCACTCAATTCCTGTAAAA+GGG + chr5_1:61902553-61902572 None:intergenic 35.0%
! ACATTGACACTTTTGATGCA+AGG - chr5_1:61902699-61902718 Msa0742090:intron 35.0%
TTGAATGTAATCGCATGTGT+CGG + chr5_1:61902760-61902779 None:intergenic 35.0%
ATGTCGCTCTTTGCAATTTA+TGG - chr5_1:61902849-61902868 Msa0742090:intron 35.0%
TTTGACAGATTGTCGATCAA+AGG - chr5_1:61902926-61902945 Msa0742090:intron 35.0%
GCTGATGTTCATGCTTATAT+CGG - chr5_1:61903288-61903307 Msa0742090:intron 35.0%
GTTAGGGGGAAAAAAATGAA+AGG + chr5_1:61903359-61903378 None:intergenic 35.0%
!!! TCATTTTTTTCCCCCTAACT+TGG - chr5_1:61903360-61903379 Msa0742090:intron 35.0%
TCATTTGAACTGCCAAGTTA+GGG + chr5_1:61903375-61903394 None:intergenic 35.0%
ATTAAAGTGATGCAGTAGCT+AGG + chr5_1:61903473-61903492 None:intergenic 35.0%
!! TCTTTTTGCATTTTCAGGGA+TGG - chr5_1:61903735-61903754 Msa0742090:intron 35.0%
ATTGCCAACTCTACTATGAT+CGG + chr5_1:61903824-61903843 None:intergenic 35.0%
TGAACAGAAAATGTCTACAC+AGG - chr5_1:61903969-61903988 Msa0742090:five_prime_UTR 35.0%
TTAAATGGTGTGAACAAACG+GGG + chr5_1:61904034-61904053 None:intergenic 35.0%
ACATGAAACTTAAAGGATCC+GGG + chr5_1:61904080-61904099 None:intergenic 35.0%
AATGTGGCACATATATGGAG+GGG + chr5_1:61900410-61900429 None:intergenic 40.0%
GAATGTGGCACATATATGGA+GGG + chr5_1:61900411-61900430 None:intergenic 40.0%
AGAATGTGGCACATATATGG+AGG + chr5_1:61900412-61900431 None:intergenic 40.0%
TGCAGAATGTGGCACATATA+TGG + chr5_1:61900415-61900434 None:intergenic 40.0%
!! CCATTTCTAGCTAGTTAACG+TGG + chr5_1:61900469-61900488 None:intergenic 40.0%
CCACGTTAACTAGCTAGAAA+TGG - chr5_1:61900466-61900485 Msa0742090:three_prime_UTR 40.0%
GCTAGAAATGGAGAATGAGT+TGG - chr5_1:61900478-61900497 Msa0742090:three_prime_UTR 40.0%
GATTACCATAGGCAGAAGAT+GGG + chr5_1:61900564-61900583 None:intergenic 40.0%
AGATTACCATAGGCAGAAGA+TGG + chr5_1:61900565-61900584 None:intergenic 40.0%
! TGCATGTTTGAAATCACGGT+GGG - chr5_1:61900976-61900995 Msa0742090:intron 40.0%
ATCAAGGGAGAATTGCGAAT+TGG - chr5_1:61901090-61901109 Msa0742090:intron 40.0%
!! TGGTACGTGAGTACTGAATT+CGG - chr5_1:61901110-61901129 Msa0742090:intron 40.0%
! AGTACTGAATTCGGGTACTT+CGG - chr5_1:61901119-61901138 Msa0742090:intron 40.0%
!!! TAACCATGTTTTGGTACGCT+TGG + chr5_1:61901171-61901190 None:intergenic 40.0%
! AATCAGCGGTAACCATGTTT+TGG + chr5_1:61901180-61901199 None:intergenic 40.0%
AAAACATGGTTACCGCTGAT+TGG - chr5_1:61901179-61901198 Msa0742090:intron 40.0%
! CCGCTGATTGGTTGAAAAAA+AGG - chr5_1:61901191-61901210 Msa0742090:intron 40.0%
GAAGAATTCGGTACGTATAG+GGG + chr5_1:61901408-61901427 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG + chr5_1:61901410-61901429 None:intergenic 40.0%
GCACATAGTCACATAATTCG+CGG + chr5_1:61901479-61901498 None:intergenic 40.0%
!! GTTTGAATTGGTGGTGTGTT+TGG + chr5_1:61901501-61901520 None:intergenic 40.0%
ACAGTGCATGTTTGAATTGG+TGG + chr5_1:61901510-61901529 None:intergenic 40.0%
GAGACAGTGCATGTTTGAAT+TGG + chr5_1:61901513-61901532 None:intergenic 40.0%
! CTCCATACTCTTTTGATCTC+TGG + chr5_1:61901619-61901638 None:intergenic 40.0%
!! TGTTCCCTGGTTTTCTGAAA+TGG + chr5_1:61901657-61901676 None:intergenic 40.0%
TTTGGTCCCTGGTTTCTAAT+AGG + chr5_1:61901694-61901713 None:intergenic 40.0%
!!! TAACAATTGGTTTTGGTCCC+TGG + chr5_1:61901705-61901724 None:intergenic 40.0%
CTACCACTGCAATTCTGATA+GGG + chr5_1:61901784-61901803 None:intergenic 40.0%
ACTACCACTGCAATTCTGAT+AGG + chr5_1:61901785-61901804 None:intergenic 40.0%
GCTTAGGAGATGTGACAATA+AGG - chr5_1:61901816-61901835 Msa0742090:CDS 40.0%
CTGCCTCATAAAATGACCAA+AGG + chr5_1:61901869-61901888 None:intergenic 40.0%
GAATTTGGATTGCATGCAGT+TGG + chr5_1:61902099-61902118 None:intergenic 40.0%
!! AGTACTACGAATTTTCAGGG+TGG - chr5_1:61902175-61902194 Msa0742090:CDS 40.0%
!!! ATTGGTTTTAGGAGCAACAG+AGG + chr5_1:61902209-61902228 None:intergenic 40.0%
TGTTGCTCCTAAAACCAATG+TGG - chr5_1:61902210-61902229 Msa0742090:CDS 40.0%
! ACGATTGATTCTTTCCTTGC+AGG + chr5_1:61902283-61902302 None:intergenic 40.0%
! TTGAGCCACCTTCATTTTCT+AGG - chr5_1:61902359-61902378 Msa0742090:intron 40.0%
TTGCTTGGCCTAGAAAATGA+AGG + chr5_1:61902370-61902389 None:intergenic 40.0%
!!! CCCCTTTTTTTCCCTTTTAC+AGG - chr5_1:61902539-61902558 Msa0742090:intron 40.0%
! TCCCTTTTACAGGAATTGAG+TGG - chr5_1:61902549-61902568 Msa0742090:intron 40.0%
GACCACTCAATTCCTGTAAA+AGG + chr5_1:61902554-61902573 None:intergenic 40.0%
AATTGAGTGGTCACCAAGAA+TGG - chr5_1:61902562-61902581 Msa0742090:intron 40.0%
GATTCTGCAACATCCATTCT+TGG + chr5_1:61902578-61902597 None:intergenic 40.0%
GTTATCATGGTAGAAGTTCC+TGG - chr5_1:61902611-61902630 Msa0742090:CDS 40.0%
GATACTGTATGGACCATATG+AGG - chr5_1:61903021-61903040 Msa0742090:intron 40.0%
ATGGACCATATGAGGTTGTT+TGG - chr5_1:61903029-61903048 Msa0742090:intron 40.0%
GATGTTCATGCTTATATCGG+AGG - chr5_1:61903291-61903310 Msa0742090:intron 40.0%
ATTTGAACTGCCAAGTTAGG+GGG + chr5_1:61903373-61903392 None:intergenic 40.0%
CATTTGAACTGCCAAGTTAG+GGG + chr5_1:61903374-61903393 None:intergenic 40.0%
GTCATTTGAACTGCCAAGTT+AGG + chr5_1:61903376-61903395 None:intergenic 40.0%
TTTGCCGATCATAGTAGAGT+TGG - chr5_1:61903817-61903836 Msa0742090:intron 40.0%
CATGAAACTTAAAGGATCCG+GGG + chr5_1:61904079-61904098 None:intergenic 40.0%
ATCTACCCATCTTCTGCCTA+TGG - chr5_1:61900556-61900575 Msa0742090:three_prime_UTR 45.0%
! GTGCATGTTTGAAATCACGG+TGG - chr5_1:61900975-61900994 Msa0742090:intron 45.0%
! GTTTGAAATCACGGTGGGTT+TGG - chr5_1:61900981-61901000 Msa0742090:intron 45.0%
!! GGTACGTGAGTACTGAATTC+GGG - chr5_1:61901111-61901130 Msa0742090:intron 45.0%
GAACCAAGCGTACCAAAACA+TGG - chr5_1:61901165-61901184 Msa0742090:intron 45.0%
AGAGTGGAGAGTGAGAAACT+TGG - chr5_1:61901283-61901302 Msa0742090:intron 45.0%
! CGTATAGGGGTATACAGCTT+CGG + chr5_1:61901395-61901414 None:intergenic 45.0%
TACGCGACAGGAGAAGAATT+CGG + chr5_1:61901420-61901439 None:intergenic 45.0%
ACATAATTCGCGGTTCGTTC+CGG + chr5_1:61901469-61901488 None:intergenic 45.0%
ACTGCAATTCTGATAGGGAG+AGG + chr5_1:61901779-61901798 None:intergenic 45.0%
TCTCCCTATCAGAATTGCAG+TGG - chr5_1:61901778-61901797 Msa0742090:intron 45.0%
GTAGTCTGAACTCTGTGCTT+AGG - chr5_1:61901800-61901819 Msa0742090:CDS 45.0%
TCATGGAGTCAGAACATCAG+TGG + chr5_1:61902065-61902084 None:intergenic 45.0%
CACGGCTCTCTTGCATAATT+AGG + chr5_1:61902250-61902269 None:intergenic 45.0%
CTTGCAGGTCTTGCAAAACA+CGG + chr5_1:61902268-61902287 None:intergenic 45.0%
CTTGGCCTAGAAAATGAAGG+TGG + chr5_1:61902367-61902386 None:intergenic 45.0%
!! CAGTGTTGGTGACATAAGAG+TGG - chr5_1:61902637-61902656 Msa0742090:intron 45.0%
!! TGTTGGTGACATAAGAGTGG+AGG - chr5_1:61902640-61902659 Msa0742090:intron 45.0%
! TCTTGTGTCGATGTTGTGTC+TGG - chr5_1:61902804-61902823 Msa0742090:intron 45.0%
! TTGTGTCTGGAGTTGGTCTA+TGG - chr5_1:61902817-61902836 Msa0742090:intron 45.0%
! TGTGTCTGGAGTTGGTCTAT+GGG - chr5_1:61902818-61902837 Msa0742090:intron 45.0%
! GTAGACGCTCTACTAGTTCT+TGG - chr5_1:61902948-61902967 Msa0742090:intron 45.0%
! ACTAGTTCTTGGAGAGAAGC+AGG - chr5_1:61902959-61902978 Msa0742090:intron 45.0%
CACAAGAGGGAGATACTGTA+TGG - chr5_1:61903010-61903029 Msa0742090:intron 45.0%
AGTGGCCAAACAACCTCATA+TGG + chr5_1:61903037-61903056 None:intergenic 45.0%
ACATTGTCCTTGTTCACACG+AGG + chr5_1:61903064-61903083 None:intergenic 45.0%
TCATGCTTATATCGGAGGCA+AGG - chr5_1:61903296-61903315 Msa0742090:intron 45.0%
TCAACGAGAAGTCTACTCAG+TGG + chr5_1:61903647-61903666 None:intergenic 45.0%
! ACGGTGGGTTTGGCAAAATC+AGG - chr5_1:61900991-61901010 Msa0742090:intron 50.0%
! CGGTGGGTTTGGCAAAATCA+GGG - chr5_1:61900992-61901011 Msa0742090:intron 50.0%
ATTCGGGTACTTCGGCGTAT+TGG - chr5_1:61901127-61901146 Msa0742090:intron 50.0%
!! TTTTGGTACGCTTGGTTCGC+TGG + chr5_1:61901163-61901182 None:intergenic 50.0%
GACCAAAGGAAGCAGATGCT+TGG + chr5_1:61901855-61901874 None:intergenic 50.0%
CATGCAGTCAGGAGCAAGAT+CGG - chr5_1:61901986-61902005 Msa0742090:intron 50.0%
! CGTGTTTTGCAAGACCTGCA+AGG - chr5_1:61902266-61902285 Msa0742090:intron 50.0%
! GAAGTTCCTGGTGTCAGTGT+TGG - chr5_1:61902623-61902642 Msa0742090:CDS 50.0%
ATGTCACCAACACTGACACC+AGG + chr5_1:61902632-61902651 None:intergenic 50.0%
TGCAAGGCTTGTCTAGTGTC+TGG - chr5_1:61902715-61902734 Msa0742090:intron 50.0%
TTGTCTAGTGTCTGGCACGT+GGG - chr5_1:61902723-61902742 Msa0742090:intron 50.0%
! GTAATCGCATGTGTCGGTGT+CGG + chr5_1:61902754-61902773 None:intergenic 50.0%
! GTCGATGTTGTGTCTGGAGT+TGG - chr5_1:61902810-61902829 Msa0742090:intron 50.0%
TTGTTCACACGAGGAGGAAG+TGG + chr5_1:61903055-61903074 None:intergenic 50.0%
ACTTCCTCCTCGTGTGAACA+AGG - chr5_1:61903054-61903073 Msa0742090:intron 50.0%
TTGTCCTTGTTCACACGAGG+AGG + chr5_1:61903061-61903080 None:intergenic 50.0%
! TTTTCGGCCAAATACCTCCC+CGG - chr5_1:61904059-61904078 Msa0742090:five_prime_UTR 50.0%
!! AAAGGATCCGGGGAGGTATT+TGG + chr5_1:61904069-61904088 None:intergenic 50.0%
GAAACTTAAAGGATCCGGGG+AGG + chr5_1:61904076-61904095 None:intergenic 50.0%
CTCACTCAGCCCTCAACTCA+TGG + chr5_1:61901249-61901268 None:intergenic 55.0%
TATACAGCTTCGGTACGCCC+CGG + chr5_1:61901385-61901404 None:intergenic 55.0%
CGCCAAGCATCTGCTTCCTT+TGG - chr5_1:61901850-61901869 Msa0742090:CDS 55.0%
GAGGCAGACATCAGCTGAAG+AGG - chr5_1:61901882-61901901 Msa0742090:intron 55.0%
CAGTCAGGAGCAAGATCGGA+TGG - chr5_1:61901990-61902009 Msa0742090:CDS 55.0%
CTTGTCTAGTGTCTGGCACG+TGG - chr5_1:61902722-61902741 Msa0742090:intron 55.0%
TGTCTAGTGTCTGGCACGTG+GGG - chr5_1:61902724-61902743 Msa0742090:intron 55.0%
TTCGTTCCGGTACGCGGTAC+GGG + chr5_1:61901456-61901475 None:intergenic 60.0%
GTTCGTTCCGGTACGCGGTA+CGG + chr5_1:61901457-61901476 None:intergenic 60.0%
TCTCGCGCAGTCATGCAGTC+AGG - chr5_1:61901975-61901994 Msa0742090:intron 60.0%
GTCTAGTGTCTGGCACGTGG+GGG - chr5_1:61902725-61902744 Msa0742090:intron 60.0%
TCCGGTACGCGGTACGGGTA+CGG + chr5_1:61901451-61901470 None:intergenic 65.0%
TCGCGGTTCGTTCCGGTACG+CGG + chr5_1:61901462-61901481 None:intergenic 65.0%
ACGGGTTCGCGGTACGCGAC+AGG + chr5_1:61901432-61901451 None:intergenic 70.0%
GCGGTACGGGTACGGGTTCG+CGG + chr5_1:61901443-61901462 None:intergenic 70.0%
CCGGTACGCGGTACGGGTAC+GGG + chr5_1:61901450-61901469 None:intergenic 70.0%
CCCGTACCCGTACCGCGTAC+CGG - chr5_1:61901447-61901466 Msa0742090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61900301 61904137 61900301 ID=Msa0742090;Name=Msa0742090
chr5_1 mRNA 61900301 61904137 61900301 ID=Msa0742090-mRNA-1;Parent=Msa0742090;Name=Msa0742090-mRNA-1;_AED=0.08;_eAED=0.08;_QI=184|0.6|0.5|1|1|1|6|349|220
chr5_1 exon 61900301 61900686 61900301 ID=Msa0742090-mRNA-1:exon:18089;Parent=Msa0742090-mRNA-1
chr5_1 exon 61901340 61901490 61901340 ID=Msa0742090-mRNA-1:exon:18088;Parent=Msa0742090-mRNA-1
chr5_1 exon 61901800 61901877 61901800 ID=Msa0742090-mRNA-1:exon:18087;Parent=Msa0742090-mRNA-1
chr5_1 exon 61901990 61902245 61901990 ID=Msa0742090-mRNA-1:exon:18086;Parent=Msa0742090-mRNA-1
chr5_1 exon 61902601 61902648 61902601 ID=Msa0742090-mRNA-1:exon:18085;Parent=Msa0742090-mRNA-1
chr5_1 exon 61903861 61904137 61903861 ID=Msa0742090-mRNA-1:exon:18084;Parent=Msa0742090-mRNA-1
chr5_1 five_prime_UTR 61903954 61904137 61903954 ID=Msa0742090-mRNA-1:five_prime_utr;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61903861 61903953 61903861 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61902601 61902648 61902601 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61901990 61902245 61901990 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61901800 61901877 61901800 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61901340 61901490 61901340 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 CDS 61900650 61900686 61900650 ID=Msa0742090-mRNA-1:cds;Parent=Msa0742090-mRNA-1
chr5_1 three_prime_UTR 61900301 61900649 61900301 ID=Msa0742090-mRNA-1:three_prime_utr;Parent=Msa0742090-mRNA-1
Gene Sequence

>Msa0742090

ATGGAGAATGAGTTGGTGAAACGCAGAATTGATACTATTGCAGCCCATTTTGCTTCCAATGATGAGATTTCATCTACCCATCTTCTGCCTATGAATTGCAGTGGTAGTCTGAACTCTGTGCTTAGGAGATGTGACAATAAGGGTGGCTTAACATCCTCTGTTGCTCCTAAAACCAATGTGGCTAAATATGAAGGTCCTAATTATGCAAGAGAGCCGTGTTTTGCAAGACCTGCAAGGAAAGAATCAATCGTTTCAAATTCAGTTGTCCAACCAATGACTAAAATGCAAGGCTATAATTTTGATTCACTTGAGCCACCTTCATTTTCTAGGCCAAGCAAACAGAATATACAAGGAGAACAGCTAAATAATGAGAAAAGAATACACCATTCTGAAATTGGAATTGAGTGGTCACCAAGAATGGATGTTGCAGAATCAGAAAGTAAATATGTTATCATGGTAGAAGTTCCTGGTGTCAGTAGACGCTCTACTAGTTCTTGGAGAGAAGCAGGCTGTCCAAATGCTTCATTTTCTTCATATCACAAGAGGGAGATACTGTATGGACCATATGAGGTTGTTTGGCCACTTCCTCCTCGTGTGAACAAGGACAATGTATCAGCTGAATTTTTGGATGGATTTTTACAAATTATAATTCCTAAAGTTTGA

Protein sequence

>Msa0742090

MENELVKRRIDTIAAHFASNDEISSTHLLPMNCSGSLNSVLRRCDNKGGLTSSVAPKTNVAKYEGPNYAREPCFARPARKESIVSNSVVQPMTKMQGYNFDSLEPPSFSRPSKQNIQGEQLNNEKRIHHSEIGIEWSPRMDVAESESKYVIMVEVPGVSRRSTSSWREAGCPNASFSSYHKREILYGPYEVVWPLPPRVNKDNVSAEFLDGFLQIIIPKV*