AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077390 MtrunA17_Chr1g0187241 92.456 623 17 1 1 623 1 593 0.0 1176
Msa0077390 MtrunA17_Chr1g0166711 77.472 617 105 4 1 616 1 584 0.0 956
Msa0077390 MtrunA17_Chr1g0166791 69.637 606 150 3 10 613 8 581 0.0 885
Msa0077390 MtrunA17_Chr1g0166741 66.613 617 164 5 1 615 3 579 0.0 831
Msa0077390 MtrunA17_Chr7g0261771 59.903 616 211 5 8 621 13 594 0.0 776
Msa0077390 MtrunA17_Chr7g0261881 58.199 622 223 5 4 620 5 594 0.0 775
Msa0077390 MtrunA17_Chr7g0261811 59.380 613 214 5 4 613 5 585 0.0 769
Msa0077390 MtrunA17_Chr1g0166771 65.571 578 158 4 40 615 5 543 0.0 766
Msa0077390 MtrunA17_Chr1g0166731 80.000 470 91 2 143 611 9 476 0.0 764
Msa0077390 MtrunA17_Chr7g0261791 56.250 624 236 5 1 619 4 595 0.0 733
Msa0077390 MtrunA17_Chr7g0261851 59.396 596 206 5 2 595 6 567 0.0 716
Msa0077390 MtrunA17_Chr7g0261661 61.845 477 175 4 144 615 1 475 0.0 629
Msa0077390 MtrunA17_Chr3g0114501 48.943 615 273 6 8 617 4 582 0.0 590
Msa0077390 MtrunA17_Chr7g0261751 54.545 528 170 5 8 497 13 508 0.0 588
Msa0077390 MtrunA17_Chr8g0375311 43.615 603 295 6 1 593 12 579 1.60e-180 523
Msa0077390 MtrunA17_Chr3g0104011 44.646 607 287 9 1 599 1 566 1.48e-176 513
Msa0077390 MtrunA17_Chr8g0375291 43.216 597 294 5 2 588 13 574 7.15e-176 511
Msa0077390 MtrunA17_Chr7g0261731 60.976 369 111 3 8 375 13 349 1.54e-169 487
Msa0077390 MtrunA17_Chr7g0241741 41.362 602 308 7 8 602 4 567 8.93e-168 490
Msa0077390 MtrunA17_Chr8g0375351 39.731 594 312 5 9 593 23 579 2.63e-165 484
Msa0077390 MtrunA17_Chr4g0005901 41.500 600 303 8 7 596 10 571 4.38e-163 479
Msa0077390 MtrunA17_Chr8g0375321 39.292 593 318 4 8 593 19 576 5.34e-162 476
Msa0077390 MtrunA17_Chr8g0375341 39.562 594 313 5 9 593 23 579 7.89e-162 476
Msa0077390 MtrunA17_Chr8g0375331 39.798 593 315 4 8 593 6 563 1.13e-159 469
Msa0077390 MtrunA17_Chr8g0375361 41.356 590 304 4 11 593 24 578 4.44e-156 461
Msa0077390 MtrunA17_Chr3g0112611 38.693 597 317 10 8 596 14 569 5.06e-145 433
Msa0077390 MtrunA17_Chr3g0112671 37.007 608 323 8 8 609 15 568 2.31e-141 423
Msa0077390 MtrunA17_Chr7g0240381 37.937 601 314 10 7 596 6 558 4.59e-141 422
Msa0077390 MtrunA17_Chr5g0422881 38.908 586 314 9 20 596 14 564 7.38e-137 412
Msa0077390 MtrunA17_Chr5g0399061 37.583 604 328 8 2 596 9 572 1.92e-136 410
Msa0077390 MtrunA17_Chr4g0008651 36.027 594 331 8 10 596 18 569 2.53e-135 408
Msa0077390 MtrunA17_Chr5g0400371 35.462 595 340 6 9 593 95 655 7.61e-134 407
Msa0077390 MtrunA17_Chr3g0077151 37.667 600 305 11 3 596 7 543 4.02e-132 398
Msa0077390 MtrunA17_Chr4g0014791 37.884 586 306 9 14 595 17 548 2.47e-131 397
Msa0077390 MtrunA17_Chr4g0014871 36.627 587 317 8 14 596 18 553 3.58e-131 396
Msa0077390 MtrunA17_Chr4g0054891 35.099 604 341 7 2 593 84 648 8.81e-131 399
Msa0077390 MtrunA17_Chr7g0217461 35.494 617 350 8 9 613 7 587 2.51e-130 395
Msa0077390 MtrunA17_Chr3g0142091 37.919 596 321 10 17 606 17 569 6.79e-130 394
Msa0077390 MtrunA17_Chr3g0142101 35.859 594 326 10 7 589 10 559 1.10e-129 393
Msa0077390 MtrunA17_Chr4g0056431 36.842 627 345 7 3 619 8 593 1.84e-129 393
Msa0077390 MtrunA17_Chr4g0014781 36.887 591 317 8 14 600 17 555 1.06e-128 390
Msa0077390 MtrunA17_Chr5g0399071 37.479 587 326 6 18 596 17 570 3.22e-127 387
Msa0077390 MtrunA17_Chr1g0213711 35.304 592 336 9 8 593 4 554 3.68e-127 387
Msa0077390 MtrunA17_Chr4g0014801 36.860 586 314 8 14 595 17 550 6.59e-126 382
Msa0077390 MtrunA17_Chr4g0014841 36.210 591 319 8 9 595 12 548 1.12e-125 382
Msa0077390 MtrunA17_Chr7g0214461 35.548 602 338 10 10 603 64 623 7.88e-125 382
Msa0077390 MtrunA17_Chr7g0218851 35.216 602 344 9 18 612 38 600 2.55e-124 380
Msa0077390 MtrunA17_Chr8g0353031 38.031 589 301 7 27 602 19 556 7.17e-124 378
Msa0077390 MtrunA17_Chr7g0255621 35.099 604 339 10 7 596 1 565 7.43e-122 374
Msa0077390 MtrunA17_Chr7g0255611 34.831 623 341 14 2 605 12 588 1.36e-121 373
Msa0077390 MtrunA17_Chr5g0415791 35.927 604 343 7 26 618 29 599 8.03e-121 371
Msa0077390 MtrunA17_Chr4g0063591 36.913 596 323 6 8 593 4 556 2.51e-119 366
Msa0077390 MtrunA17_Chr7g0255601 35.667 600 327 11 14 596 15 572 1.41e-118 365
Msa0077390 MtrunA17_Chr7g0214731 34.400 625 355 13 11 621 44 627 3.55e-117 363
Msa0077390 MtrunA17_Chr3g0133341 34.122 592 344 6 22 605 10 563 4.93e-116 357
Msa0077390 MtrunA17_Chr2g0284701 33.443 607 347 10 14 598 19 590 2.11e-113 352
Msa0077390 MtrunA17_Chr5g0439381 34.405 622 339 10 8 611 9 579 9.73e-113 350
Msa0077390 MtrunA17_Chr2g0276751 35.585 607 326 11 6 600 14 567 2.31e-109 341
Msa0077390 MtrunA17_Chr8g0362711 33.167 600 344 9 15 597 13 572 6.26e-106 332
Msa0077390 MtrunA17_Chr4g0011041 31.034 609 359 9 5 593 11 578 9.43e-106 331
Msa0077390 MtrunA17_Chr4g0011471 33.625 571 324 8 37 593 27 556 1.98e-105 330
Msa0077390 MtrunA17_Chr4g0014861 38.443 424 248 5 176 595 13 427 4.05e-101 314
Msa0077390 MtrunA17_Chr5g0415961 31.115 601 360 9 14 598 12 574 7.98e-101 318
Msa0077390 MtrunA17_Chr1g0193391 30.185 593 359 10 14 598 3 548 7.71e-98 311
Msa0077390 MtrunA17_Chr3g0082631 38.055 473 247 8 143 596 14 459 2.55e-97 306
Msa0077390 MtrunA17_Chr8g0379971 32.643 628 352 12 7 598 1 593 1.97e-96 308
Msa0077390 MtrunA17_Chr7g0271221 30.579 605 369 8 13 612 4 562 1.42e-95 305
Msa0077390 MtrunA17_Chr4g0060001 33.508 573 326 9 28 586 31 562 5.51e-95 304
Msa0077390 MtrunA17_Chr4g0059981 31.392 618 368 9 2 605 15 590 1.04e-94 303
Msa0077390 MtrunA17_Chr4g0059991 31.229 586 356 8 31 602 27 579 1.04e-93 300
Msa0077390 MtrunA17_Chr4g0059971 30.856 619 363 11 2 596 7 584 4.39e-93 298
Msa0077390 MtrunA17_Chr7g0240271 29.440 625 387 8 8 620 6 588 2.10e-92 296
Msa0077390 MtrunA17_Chr1g0157601 31.497 581 335 12 30 593 19 553 1.46e-90 291
Msa0077390 MtrunA17_Chr4g0069581 35.642 491 291 9 138 621 68 540 1.10e-89 289
Msa0077390 MtrunA17_Chr8g0362781 29.481 597 366 8 19 597 23 582 3.23e-89 288
Msa0077390 MtrunA17_Chr8g0390331 29.948 581 354 8 25 593 14 553 1.21e-88 286
Msa0077390 MtrunA17_Chr8g0362801 33.689 469 295 7 144 600 1 465 2.38e-87 280
Msa0077390 MtrunA17_Chr1g0147631 29.950 601 359 13 8 593 11 564 5.53e-85 277
Msa0077390 MtrunA17_Chr7g0240281 30.637 581 357 6 26 594 24 570 7.61e-83 271
Msa0077390 MtrunA17_Chr2g0331511 30.146 617 359 16 26 617 21 590 8.81e-82 270
Msa0077390 MtrunA17_Chr2g0331471 30.421 618 359 15 26 620 88 657 2.54e-81 270
Msa0077390 MtrunA17_Chr8g0379991 31.115 601 330 12 47 598 1 566 7.27e-81 266
Msa0077390 MtrunA17_Chr2g0331521 27.663 582 367 10 26 593 22 563 4.91e-80 264
Msa0077390 MtrunA17_Chr2g0331481 31.179 619 352 18 26 620 26 594 2.54e-79 263
Msa0077390 MtrunA17_Chr4g0003761 30.399 602 364 13 22 610 27 586 3.55e-79 262
Msa0077390 MtrunA17_Chr7g0235521 32.985 479 295 7 144 602 1 473 3.83e-79 258
Msa0077390 MtrunA17_Chr1g0157611 28.881 599 361 13 14 593 2 554 4.60e-79 261
Msa0077390 MtrunA17_Chr7g0261721 59.000 200 82 0 400 599 5 204 1.33e-78 249
Msa0077390 MtrunA17_Chr7g0240181 32.777 479 296 7 144 602 1 473 1.49e-77 254
Msa0077390 MtrunA17_Chr7g0240211 32.777 479 296 7 144 602 1 473 1.66e-77 254
Msa0077390 MtrunA17_Chr7g0240131 32.568 479 297 7 144 602 1 473 3.12e-77 253
Msa0077390 MtrunA17_Chr6g0451841 33.410 434 249 11 190 602 127 541 2.29e-76 253
Msa0077390 MtrunA17_Chr1g0157621 31.239 557 324 14 47 587 1 514 4.67e-76 253
Msa0077390 MtrunA17_Chr7g0240151 31.942 479 282 8 144 602 1 455 2.24e-72 240
Msa0077390 MtrunA17_Chr2g0331461 29.479 614 370 14 26 621 26 594 1.88e-71 242
Msa0077390 MtrunA17_Chr5g0415841 31.064 470 302 8 144 599 1 462 8.71e-70 233
Msa0077390 MtrunA17_Chr2g0326211 27.087 587 352 11 27 596 20 547 1.48e-69 235
Msa0077390 MtrunA17_Chr3g0142111 36.280 328 173 4 14 340 34 326 1.50e-67 223
Msa0077390 MtrunA17_Chr2g0325961 27.197 603 363 11 14 596 2 548 1.24e-65 224
Msa0077390 MtrunA17_Chr2g0325951 27.425 598 367 9 14 596 2 547 1.65e-65 224
Msa0077390 MtrunA17_Chr3g0112631 37.584 298 171 6 333 622 3 293 3.04e-65 216
Msa0077390 MtrunA17_Chr1g0177591 27.833 600 357 16 8 593 27 564 1.09e-64 223
Msa0077390 MtrunA17_Chr1g0166721 77.686 121 24 2 1 119 1 120 1.08e-59 196
Msa0077390 MtrunA17_Chr7g0234381 31.798 456 269 8 143 598 3 416 1.69e-58 202
Msa0077390 MtrunA17_Chr7g0234151 32.237 456 267 8 143 598 3 416 9.10e-58 200
Msa0077390 MtrunA17_Chr7g0261831 59.615 156 59 3 286 439 1 154 3.50e-57 192
Msa0077390 MtrunA17_Chr7g0234181 31.938 454 265 8 146 598 1 411 2.69e-56 196
Msa0077390 MtrunA17_Chr1g0177611 28.899 436 281 8 170 593 17 435 5.93e-56 196
Msa0077390 MtrunA17_Chr4g0060071 33.333 297 195 2 302 597 5 299 2.22e-54 187
Msa0077390 MtrunA17_Chr1g0177631 29.885 435 272 10 173 593 20 435 3.44e-54 191
Msa0077390 MtrunA17_Chr3g0142121 36.923 260 151 5 334 589 11 261 6.82e-51 177
Msa0077390 MtrunA17_Chr7g0261671 68.868 106 33 0 8 113 14 119 3.82e-50 169
Msa0077390 MtrunA17_Chr3g0112651 39.205 176 102 1 143 318 21 191 5.22e-42 151
Msa0077390 MtrunA17_Chr1g0147591 32.995 197 106 5 187 368 10 195 7.16e-27 108
Msa0077390 MtrunA17_Chr4g0014851 47.000 100 53 0 14 113 18 117 2.07e-25 102
Msa0077390 MtrunA17_Chr4g0060061 40.496 121 72 0 169 289 8 128 2.04e-24 99.0
Msa0077390 MtrunA17_Chr3g0112661 43.810 105 59 0 11 115 16 120 1.37e-22 94.0
Msa0077390 MtrunA17_Chr7g0261821 55.224 67 30 0 534 600 1 67 6.24e-22 89.7
Msa0077390 MtrunA17_Chr4g0060051 39.450 109 62 1 1 109 1 105 3.26e-18 81.3
Msa0077390 MtrunA17_Chr2g0326221 26.577 222 133 4 376 596 31 223 1.10e-17 82.4
Msa0077390 MtrunA17_Chr8g0362791 41.176 85 50 0 31 115 41 125 8.89e-16 74.7
Msa0077390 MtrunA17_Chr3g0082621 45.833 72 39 0 42 113 2 73 1.71e-14 69.3
Msa0077390 MtrunA17_Chr7g0261841 55.556 54 23 1 144 196 1 54 1.82e-13 66.2
Msa0077390 MtrunA17_Chr8g0382601 38.356 73 44 1 239 310 1 73 5.17e-12 62.4
Msa0077390 MtrunA17_Chr1g0166761 69.231 39 10 1 1 39 3 39 3.00e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077390 AT5G46050.1 67.213 610 165 5 7 614 6 582 0.0 823
Msa0077390 AT5G46040.1 64.123 616 183 6 7 620 6 585 0.0 777
Msa0077390 AT5G46050.2 70.190 473 136 4 144 614 1 470 0.0 675
Msa0077390 AT2G40460.1 50.333 600 253 8 1 598 1 557 0.0 598
Msa0077390 AT2G02040.1 43.095 601 297 7 1 591 12 577 5.16e-178 517
Msa0077390 AT3G54140.1 43.328 607 295 8 1 599 1 566 6.00e-176 511
Msa0077390 AT3G54140.2 43.328 607 295 8 1 599 1 566 6.00e-176 511
Msa0077390 AT1G62200.1 40.527 607 304 6 1 590 15 581 2.43e-167 490
Msa0077390 AT5G01180.2 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0077390 AT5G01180.3 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0077390 AT5G01180.1 42.429 601 292 7 8 596 5 563 2.91e-167 489
Msa0077390 AT1G62200.3 38.959 634 305 7 1 590 29 624 2.99e-162 479
Msa0077390 AT1G62200.2 38.959 634 305 7 1 590 15 610 3.33e-162 478
Msa0077390 AT2G02020.1 39.460 593 284 8 3 588 14 538 1.03e-152 451
Msa0077390 AT3G54450.1 39.698 597 294 10 26 609 11 554 1.92e-147 438
Msa0077390 AT3G53960.1 38.462 611 323 8 8 608 17 584 2.85e-145 434
Msa0077390 AT2G37900.1 35.343 597 332 6 8 597 18 567 4.88e-135 407
Msa0077390 AT2G02020.2 36.931 593 278 9 3 588 14 517 9.19e-135 404
Msa0077390 AT1G32450.1 36.242 596 337 6 9 593 18 581 5.55e-134 405
Msa0077390 AT1G12110.1 38.602 601 319 9 18 604 17 581 5.80e-131 397
Msa0077390 AT1G22540.1 37.815 595 307 11 16 604 18 555 1.81e-130 395
Msa0077390 AT1G72140.1 36.393 610 309 11 2 597 9 553 1.71e-126 384
Msa0077390 AT1G68570.1 36.435 634 353 10 1 623 1 595 5.85e-126 384
Msa0077390 AT2G26690.1 37.500 608 323 7 8 604 4 565 1.89e-124 380
Msa0077390 AT1G22570.1 36.982 603 325 9 2 596 5 560 5.88e-124 378
Msa0077390 AT1G68570.2 37.099 593 328 7 42 623 7 565 6.25e-124 378
Msa0077390 AT4G21680.1 34.158 606 349 7 9 600 9 578 5.03e-118 363
Msa0077390 AT5G13400.1 35.846 597 339 9 17 601 52 616 2.01e-117 363
Msa0077390 AT2G37900.2 35.768 534 289 6 71 597 2 488 1.84e-116 357
Msa0077390 AT2G26690.2 37.631 574 301 7 42 604 5 532 1.64e-115 355
Msa0077390 AT1G22570.2 37.123 563 300 8 42 596 7 523 3.30e-114 352
Msa0077390 AT1G59740.1 35.833 600 336 8 2 591 12 572 6.79e-114 353
Msa0077390 AT1G72130.1 34.483 580 304 11 24 595 21 532 1.38e-113 350
Msa0077390 AT5G19640.1 35.163 583 319 12 29 603 60 591 2.31e-113 352
Msa0077390 AT1G72125.1 36.789 598 320 10 7 596 9 556 7.42e-113 349
Msa0077390 AT2G26690.3 37.522 565 296 7 51 604 2 520 1.41e-112 348
Msa0077390 AT1G69870.1 34.991 583 332 7 25 596 48 594 3.82e-112 349
Msa0077390 AT3G21670.1 36.027 594 317 6 18 599 19 561 8.56e-112 347
Msa0077390 AT1G72120.1 36.913 596 318 10 7 596 9 552 9.40e-112 346
Msa0077390 AT1G69850.1 32.258 620 359 9 7 602 3 585 9.69e-107 334
Msa0077390 AT1G33440.1 34.776 624 338 13 9 612 19 593 6.99e-106 332
Msa0077390 AT1G27040.1 32.302 582 360 3 14 595 13 560 7.76e-105 329
Msa0077390 AT1G27040.2 32.302 582 360 3 14 595 9 556 8.68e-105 328
Msa0077390 AT1G27040.3 31.907 561 348 3 35 595 2 528 3.08e-98 310
Msa0077390 AT3G16180.1 31.186 590 348 10 22 593 16 565 4.89e-97 309
Msa0077390 AT1G22550.1 38.785 428 233 9 179 596 151 559 1.57e-96 307
Msa0077390 AT1G22550.1 46.226 106 56 1 2 107 5 109 1.12e-21 99.8
Msa0077390 AT1G52190.1 30.835 587 348 11 26 593 19 566 1.11e-94 303
Msa0077390 AT1G18880.1 32.040 593 346 11 31 605 22 575 9.17e-94 300
Msa0077390 AT1G27080.1 32.590 583 337 9 26 597 12 549 8.64e-93 298
Msa0077390 AT1G72130.2 35.550 436 246 8 168 595 6 414 7.80e-89 282
Msa0077390 AT1G72130.3 35.550 436 246 8 168 595 6 414 7.80e-89 282
Msa0077390 AT5G62680.1 31.250 624 369 12 4 609 24 605 2.55e-88 287
Msa0077390 AT5G14940.1 30.167 600 343 13 26 604 5 549 3.84e-88 285
Msa0077390 AT5G28470.2 30.546 586 348 11 24 596 13 552 4.79e-87 282
Msa0077390 AT5G62730.1 29.766 598 355 8 14 598 42 587 9.55e-86 280
Msa0077390 AT3G25260.1 32.313 588 316 13 5 587 2 512 1.40e-84 274
Msa0077390 AT3G47960.1 31.911 586 340 12 31 597 64 609 3.65e-84 276
Msa0077390 AT3G45650.1 29.933 598 370 9 12 608 6 555 4.15e-84 274
Msa0077390 AT5G28470.1 30.375 586 347 12 24 596 13 550 4.58e-84 274
Msa0077390 AT1G27080.2 32.790 552 315 10 57 597 1 507 5.41e-83 271
Msa0077390 AT3G45700.1 30.809 581 338 14 27 601 15 537 4.68e-81 266
Msa0077390 AT3G45710.1 30.201 596 347 14 28 611 21 559 2.00e-80 265
Msa0077390 AT5G62730.2 29.585 578 342 8 34 598 3 528 3.55e-80 263
Msa0077390 AT3G45650.2 28.686 624 370 10 12 608 6 581 1.48e-78 260
Msa0077390 AT3G45720.1 30.612 588 335 15 28 602 19 546 2.95e-78 259
Msa0077390 AT3G45680.1 30.118 591 349 15 14 596 8 542 8.76e-78 258
Msa0077390 AT3G01350.1 29.043 606 349 13 25 601 3 556 1.07e-77 258
Msa0077390 AT1G69860.1 30.120 581 349 10 26 596 16 549 2.15e-76 254
Msa0077390 AT3G25280.1 29.863 586 344 10 9 593 2 521 1.12e-75 251
Msa0077390 AT3G45660.1 28.722 571 356 9 28 596 21 542 7.32e-75 250
Msa0077390 AT3G45660.3 28.722 571 356 9 28 596 21 542 7.32e-75 250
Msa0077390 AT3G45660.2 28.722 571 356 9 28 596 42 563 1.16e-74 250
Msa0077390 AT3G45690.1 28.522 575 314 15 27 596 17 499 7.87e-67 227
Msa0077390 AT5G11570.1 26.701 588 310 14 14 593 2 476 3.85e-59 206
Msa0077390 AT2G38100.2 26.846 447 288 10 176 609 76 496 2.30e-38 149
Msa0077390 AT2G38100.1 26.846 447 288 10 176 609 92 512 4.96e-38 148
Msa0077390 AT2G38100.3 26.846 447 288 10 176 609 98 518 5.31e-38 148

Find 142 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACTCTTCATGCTTTC+TGG 0.066053 1_2:+54269232 None:intergenic
GCTTCCTCAGTTTATACTTA+TGG 0.141612 1_2:-54269311 Msa0077390:CDS
GGTAATCCCTCTTGGATTCT+TGG 0.231736 1_2:+54269480 None:intergenic
AGGCAATTTGTGTCTATAAA+AGG 0.238778 1_2:+54270536 None:intergenic
TTTGAAAGAATGGCATATTA+TGG 0.240890 1_2:-54273957 Msa0077390:CDS
TAGTTGCCTCTTTGAGAAAA+TGG 0.247765 1_2:-54270479 Msa0077390:CDS
CTTCCTCAGTTTATACTTAT+GGG 0.256695 1_2:-54269310 Msa0077390:CDS
CATCTGTGACAGAAAATTAT+AGG 0.263662 1_2:-54269402 Msa0077390:CDS
TGTTCTTCACACAATTATTA+TGG 0.272669 1_2:-54269431 Msa0077390:CDS
GTTAAGGATGATTCCAATCT+TGG 0.276563 1_2:-54269695 Msa0077390:CDS
CTAGAACAGTATTAGCAAAA+AGG 0.279901 1_2:+54270652 None:intergenic
TTACAAGGCTTTATGTATAT+AGG 0.285350 1_2:-54269015 Msa0077390:CDS
TGGATGTTTAGCATCTTCTT+TGG 0.287426 1_2:-54270678 Msa0077390:CDS
AATATCAATTATGATATTCT+TGG 0.288500 1_2:-54270568 Msa0077390:CDS
ATTTCTTACCGAGAGATAAA+TGG 0.296351 1_2:+54273764 None:intergenic
ATGCAATAACTTATTCTATA+AGG 0.305469 1_2:+54268921 None:intergenic
ATTTGGATGACACCTATATT+AGG 0.308097 1_2:-54273843 Msa0077390:CDS
TTCTCGGATTAGGCGTGTTC+TGG 0.309363 1_2:-54271035 Msa0077390:intron
AGCTTTCCAACCACCAGTTT+TGG 0.319121 1_2:+54275277 None:intergenic
TACAAGGCTTTATGTATATA+GGG 0.319432 1_2:-54269014 Msa0077390:CDS
TAGGGTGAAAATCATCAAAT+TGG 0.324030 1_2:+54270736 None:intergenic
AGAACTATATGAACTTGATA+TGG 0.329187 1_2:-54270430 Msa0077390:CDS
ACTAAGGAACATGGTCATAA+AGG 0.332144 1_2:-54269133 Msa0077390:CDS
CCAATTGGGTTGGGACCATT+TGG 0.334713 1_2:-54273860 Msa0077390:CDS
GGATGTTTAGCATCTTCTTT+GGG 0.346262 1_2:-54270677 Msa0077390:CDS
TGTATATAGGGCTGAAGTTT+CGG 0.360555 1_2:-54269002 Msa0077390:CDS
ATGAATAGAATGAGCTCAAA+AGG 0.367880 1_2:+54268726 None:intergenic
GCAACATAAGCACCTAATAT+AGG 0.383360 1_2:+54273831 None:intergenic
AAAGTCAATCCTGCTATAAC+TGG 0.384241 1_2:-54271100 Msa0077390:CDS
ATGATCTCACAGACACTTCT+CGG 0.387748 1_2:-54271051 Msa0077390:CDS
TCTATGACCGTTTCTTTGTA+AGG 0.389056 1_2:-54269519 Msa0077390:CDS
CAAGTAACAATGTCACCAAT+TGG 0.391039 1_2:-54273875 Msa0077390:CDS
TCATATTCTTCAACTACATT+AGG 0.391852 1_2:-54269205 Msa0077390:CDS
CTTCTTCAAAGAATGGGAAT+TGG 0.397785 1_2:-54269457 Msa0077390:CDS
CAAAAGTTGAAGGATAACTA+TGG 0.405149 1_2:-54275375 Msa0077390:exon
ATAAGTTATTGCATCTATAT+AGG 0.409064 1_2:-54268912 Msa0077390:exon
CCTGTTCTTAGATCCAAAAC+TGG 0.409508 1_2:-54275290 Msa0077390:CDS
ACTTGAGCCATCATTGTACT+TGG 0.409568 1_2:+54269658 None:intergenic
TATAGTTCTTTAGTATCATC+AGG 0.412300 1_2:+54270444 None:intergenic
CAATTCCCATTCTTTGAAGA+AGG 0.415294 1_2:+54269458 None:intergenic
ACAAATGTAGCAACCAAGAT+TGG 0.425089 1_2:+54269682 None:intergenic
GCACCAATGGTTGATATGTT+GGG 0.427910 1_2:+54270762 None:intergenic
AGCACCAATGGTTGATATGT+TGG 0.430741 1_2:+54270761 None:intergenic
TGAAGAAGGGTAATCCCTCT+TGG 0.431813 1_2:+54269472 None:intergenic
GAACATGGTTTAGTTGAAAG+TGG 0.432350 1_2:-54269364 Msa0077390:CDS
CTAAGGAACATGGTCATAAA+GGG 0.434102 1_2:-54269132 Msa0077390:CDS
GATTACCCTTCTTCAAAGAA+TGG 0.435756 1_2:-54269464 Msa0077390:CDS
TTGAAGGATAACTATGGAAG+AGG 0.437888 1_2:-54275369 Msa0077390:exon
GCACTTTACACTCTAGCAAT+AGG 0.438872 1_2:-54270801 Msa0077390:CDS
ATGGCATTGTGGTGGCTTCA+AGG 0.445113 1_2:+54270884 None:intergenic
TTCTCTTCTTTCCTATCCAA+GGG 0.446411 1_2:-54275493 Msa0077390:five_prime_UTR
ATGGAAGAGTATGCTAAGAA+AGG 0.449915 1_2:-54270411 Msa0077390:CDS
ATTACCCTTCTTCAAAGAAT+GGG 0.450564 1_2:-54269463 Msa0077390:CDS
GAGAGAGAGATAAATATTTG+TGG 0.452040 1_2:-54275409 Msa0077390:five_prime_UTR
TGCATCCTCCATTTATCTCT+CGG 0.456345 1_2:-54273772 Msa0077390:intron
ATATATAGATATAACAACTT+TGG 0.458155 1_2:+54268865 None:intergenic
AAAGCTTGTTCCTTTGTTGT+TGG 0.460711 1_2:-54275260 Msa0077390:intron
TACTTGCAGTCACTGTTCCT+TGG 0.461462 1_2:+54273892 None:intergenic
CCAAATGGTCCCAACCCAAT+TGG 0.463312 1_2:+54273860 None:intergenic
AAGAGACAAAACAAATGTTA+AGG 0.463617 1_2:-54269711 Msa0077390:CDS
ACAAATGCAGCTAAACTTGC+TGG 0.466855 1_2:+54269571 None:intergenic
GACTGTATCGCGTATAACTA+AGG 0.467198 1_2:-54269149 Msa0077390:CDS
TGGAAGAGTATGCTAAGAAA+GGG 0.468058 1_2:-54270410 Msa0077390:CDS
GATAATGTAGGGTGGACTCT+TGG 0.468721 1_2:-54270618 Msa0077390:CDS
TACACTCTAGCAATAGGAAC+AGG 0.472265 1_2:-54270795 Msa0077390:CDS
TTTCTCTTCTTTCCTATCCA+AGG 0.473037 1_2:-54275494 Msa0077390:five_prime_UTR
GGCAATTTGTGTCTATAAAA+GGG 0.473662 1_2:+54270537 None:intergenic
CCAGAAAGCATGAAGAGTAT+TGG 0.475085 1_2:-54269232 Msa0077390:CDS
GACAAGGCAAGTGTCAAAAC+AGG 0.476830 1_2:-54269775 Msa0077390:CDS
ATCAAATTGGTCAGCACCAA+TGG 0.477753 1_2:+54270749 None:intergenic
ATTTGTTCCAAGTACAATGA+TGG 0.478629 1_2:-54269665 Msa0077390:CDS
TACGCGATACAGTCGACAAA+AGG 0.483367 1_2:+54269158 None:intergenic
TCTTCAACTACATTAGGCAT+TGG 0.484306 1_2:-54269199 Msa0077390:CDS
TCACAGACACTTCTCGGATT+AGG 0.484393 1_2:-54271045 Msa0077390:CDS
TCTTCTTCGCGATTGTTACA+AGG 0.486697 1_2:-54269030 Msa0077390:CDS
GAGTCCACCCTACATTATCT+TGG 0.488116 1_2:+54270622 None:intergenic
GTATGAAGTATTTGAAAGAA+TGG 0.490979 1_2:-54273967 Msa0077390:CDS
GTTGAGTAAACAAAAGTTGA+AGG 0.493147 1_2:-54275385 Msa0077390:five_prime_UTR
GAAGCTTCTTTGTGAGGAAG+AGG 0.495772 1_2:+54273916 None:intergenic
AAGGAGGAGTACACAGAAGA+TGG 0.498352 1_2:-54275335 Msa0077390:CDS
TATAGACACAAATTGCCTGC+AGG 0.499408 1_2:-54270531 Msa0077390:CDS
AGAGGGCAGAGTAGTGAAGG+AGG 0.501220 1_2:-54275351 Msa0077390:CDS
TAATATAGGTGTCATCCAAA+TGG 0.502308 1_2:+54273845 None:intergenic
GCATAATCCTTACAAAGAAA+CGG 0.503299 1_2:+54269512 None:intergenic
GTTTATATCCAAGATAATGT+AGG 0.508581 1_2:-54270630 Msa0077390:CDS
GGATATGCTTTACCAACTCT+AGG 0.512162 1_2:-54270597 Msa0077390:CDS
AAGTAACAATGTCACCAATT+GGG 0.513695 1_2:-54273874 Msa0077390:CDS
TCAATTATGATATTCTTGGC+AGG 0.514039 1_2:-54270564 Msa0077390:CDS
TACTTTCACTAGAATGGCTA+GGG 0.514636 1_2:-54270505 Msa0077390:CDS
TTAGATCCAAAACTGGTGGT+TGG 0.517084 1_2:-54275283 Msa0077390:CDS
GATATTGCTAATCCTAGAGT+TGG 0.517407 1_2:+54270585 None:intergenic
ATAGTTAAACCAGTTATAGC+AGG 0.517679 1_2:+54271091 None:intergenic
CTTGGTGAAGCTTCTTTGTG+AGG 0.518141 1_2:+54273910 None:intergenic
AGGGAGTACTTTCACTAGAA+TGG 0.522005 1_2:-54270511 Msa0077390:CDS
TGCTCTTAGGTCCCTTGGAT+AGG 0.522347 1_2:+54275482 None:intergenic
GTACTTTCACTAGAATGGCT+AGG 0.525257 1_2:-54270506 Msa0077390:CDS
AACAATGTCACCAATTGGGT+TGG 0.525729 1_2:-54273870 Msa0077390:CDS
AATTCCCATTCTTTGAAGAA+GGG 0.526526 1_2:+54269459 None:intergenic
ACAATGTCACCAATTGGGTT+GGG 0.534361 1_2:-54273869 Msa0077390:CDS
CTTAGAGTGGCAAAAGAACA+TGG 0.538649 1_2:-54269379 Msa0077390:CDS
TATGTTGCTGATGCTCACCT+TGG 0.550523 1_2:-54273816 Msa0077390:CDS
TTTATATCCAAGATAATGTA+GGG 0.553143 1_2:-54270629 Msa0077390:CDS
CACAGCTAATTGTAATGTAG+AGG 0.555926 1_2:+54270833 None:intergenic
GGAAGAGGGCAGAGTAGTGA+AGG 0.558901 1_2:-54275354 Msa0077390:CDS
CTTATTCTATAAGGTTCGCA+TGG 0.561389 1_2:+54268930 None:intergenic
ATAGACACAAATTGCCTGCA+GGG 0.564786 1_2:-54270530 Msa0077390:CDS
CTAGTGAAAGTACTCCCTGC+AGG 0.565881 1_2:+54270516 None:intergenic
AAATATATATACCTCAATGT+TGG 0.566219 1_2:+54270360 None:intergenic
CATTGTGGTGGCTTCAAGGT+AGG 0.568165 1_2:+54270888 None:intergenic
TTGATTCTACTCCAACATTG+AGG 0.568265 1_2:-54270371 Msa0077390:intron
AAACCCAACATATCAACCAT+TGG 0.569968 1_2:-54270765 Msa0077390:CDS
ACAACACTTGACAGACACAT+TGG 0.573195 1_2:-54269610 Msa0077390:CDS
TGAATAGAATGAGCTCAAAA+GGG 0.577618 1_2:+54268727 None:intergenic
AAACAGGCTCAACTAGTCCA+TGG 0.584333 1_2:-54269759 Msa0077390:CDS
AGCAAAATGAAAATACTCAA+AGG 0.587653 1_2:+54269331 None:intergenic
GATTATCAATAGAATGCATG+TGG 0.589368 1_2:+54275517 None:intergenic
CATGCTTGCCAATGAACTGA+AGG 0.590151 1_2:-54268969 Msa0077390:CDS
GATGGAACTGTGAATCTCAA+AGG 0.591833 1_2:-54275317 Msa0077390:CDS
ATTATTTAGGTTCCTAGACA+AGG 0.594422 1_2:-54269791 Msa0077390:intron
AACACCCTCTTTGTAAAACA+AGG 0.599751 1_2:-54269634 Msa0077390:CDS
ATTATCAATAGAATGCATGT+GGG 0.601491 1_2:+54275518 None:intergenic
TGAAGGATAACTATGGAAGA+GGG 0.606507 1_2:-54275368 Msa0077390:exon
GTAACTGTGCATAACATCCA+TGG 0.611443 1_2:+54269742 None:intergenic
AGGAACATGGTCATAAAGGG+TGG 0.616187 1_2:-54269129 Msa0077390:CDS
AATGCAGCTAAACTTGCTGG+TGG 0.617774 1_2:+54269574 None:intergenic
TCTAATTCATGGCATTGTGG+TGG 0.621164 1_2:+54270876 None:intergenic
ACTCTAGCAATAGGAACAGG+TGG 0.624774 1_2:-54270792 Msa0077390:CDS
AGAAAATTATAGGCTTAGAG+TGG 0.632729 1_2:-54269392 Msa0077390:CDS
ACATCTAATTCATGGCATTG+TGG 0.635027 1_2:+54270873 None:intergenic
TCTTTGTAAGGATTATGCAG+AGG 0.637056 1_2:-54269507 Msa0077390:CDS
TCTTACCGAGAGATAAATGG+AGG 0.642713 1_2:+54273767 None:intergenic
GTTCTTAGATCCAAAACTGG+TGG 0.657227 1_2:-54275287 Msa0077390:CDS
CATGGTTTAGTTGAAAGTGG+AGG 0.662978 1_2:-54269361 Msa0077390:CDS
GAGCACTACACAAACAAGCA+AGG 0.664656 1_2:+54269540 None:intergenic
TGAACTGAAGGAAAAGAAAG+CGG 0.669979 1_2:-54268957 Msa0077390:CDS
CTCACAAAGAAGCTTCACCA+AGG 0.674743 1_2:-54273909 Msa0077390:CDS
TCGCGTATAACTAAGGAACA+TGG 0.677015 1_2:-54269142 Msa0077390:CDS
GGTTAACCAAGAATCCAAGA+GGG 0.683725 1_2:-54269486 Msa0077390:CDS
TTATCAATAGAATGCATGTG+GGG 0.684070 1_2:+54275519 None:intergenic
AGGTTAACCAAGAATCCAAG+AGG 0.692586 1_2:-54269487 Msa0077390:CDS
GTTCCCATAAGTATAAACTG+AGG 0.698344 1_2:+54269307 None:intergenic
ATATCCAAGATAATGTAGGG+TGG 0.707851 1_2:-54270626 Msa0077390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTAAAATTTTAA+AGG - chr1_2:54271618-54271637 Msa0077390:intron 0.0%
!!! AAATTTTTTTATATTCTTCA+TGG - chr1_2:54270944-54270963 Msa0077390:intron 10.0%
!!! TTTTTTCTTTATTTTATGAA+AGG - chr1_2:54271412-54271431 Msa0077390:intron 10.0%
!! GTAATAAAAAATAATTAAGT+TGG - chr1_2:54271940-54271959 Msa0077390:intron 10.0%
!! TTATTATTAAATACAAAAGA+GGG + chr1_2:54272466-54272485 None:intergenic 10.0%
!! TTTATTATTAAATACAAAAG+AGG + chr1_2:54272467-54272486 None:intergenic 10.0%
!!! TAATTTTCTCAAATTATTTT+TGG - chr1_2:54273967-54273986 Msa0077390:CDS 10.0%
!!! TTTCATTATAATTTTTTAAG+GGG + chr1_2:54274281-54274300 None:intergenic 10.0%
!!! CTTTCATTATAATTTTTTAA+GGG + chr1_2:54274282-54274301 None:intergenic 10.0%
!!! ACTTTCATTATAATTTTTTA+AGG + chr1_2:54274283-54274302 None:intergenic 10.0%
!! CGTATATTAATTTATTATTT+AGG - chr1_2:54274378-54274397 Msa0077390:intron 10.0%
!!! TGAGAAAACTTATTTTTTAA+GGG - chr1_2:54269278-54269297 Msa0077390:CDS 15.0%
!! AAAACAAATTGATCATAAAT+TGG - chr1_2:54269502-54269521 Msa0077390:CDS 15.0%
!! TTTCTACATTTATAAATTGA+AGG + chr1_2:54270147-54270166 None:intergenic 15.0%
!! GATTGTATGTTAAATTAAAA+GGG + chr1_2:54270512-54270531 None:intergenic 15.0%
!! TGATTGTATGTTAAATTAAA+AGG + chr1_2:54270513-54270532 None:intergenic 15.0%
!!! CAATAATTATAATGAGTTTT+TGG + chr1_2:54270540-54270559 None:intergenic 15.0%
!! AAATAATTCATAATTGCAAA+TGG + chr1_2:54270996-54271015 None:intergenic 15.0%
!!! ATGAATTATTTTGATGAAAA+TGG - chr1_2:54271005-54271024 Msa0077390:intron 15.0%
!!! TTTTTATAAAAAGAATCAGA+GGG + chr1_2:54271779-54271798 None:intergenic 15.0%
!!! TTTTTTATAAAAAGAATCAG+AGG + chr1_2:54271780-54271799 None:intergenic 15.0%
!! CATCAAATACATTTAAAAAT+TGG + chr1_2:54271846-54271865 None:intergenic 15.0%
!!! GTGTTTTGTTTATTATAAAA+AGG - chr1_2:54271968-54271987 Msa0077390:intron 15.0%
!! TTGTTTATTATAAAAAGGAT+CGG - chr1_2:54271973-54271992 Msa0077390:intron 15.0%
!! TATAAAGAAAAATACATCAA+AGG - chr1_2:54272649-54272668 Msa0077390:intron 15.0%
!!! AAAAGATTGATAATACTAAT+AGG - chr1_2:54273026-54273045 Msa0077390:intron 15.0%
!!! AAAGATTGATAATACTAATA+GGG - chr1_2:54273027-54273046 Msa0077390:intron 15.0%
!! CATTAATTATATTATTGTTC+AGG - chr1_2:54273057-54273076 Msa0077390:intron 15.0%
!!! ATAAACTTTCATTTTTCAAT+TGG - chr1_2:54273481-54273500 Msa0077390:intron 15.0%
!! AATATCAATTATGATATTCT+TGG - chr1_2:54273614-54273633 Msa0077390:intron 15.0%
!! ATATATAGATATAACAACTT+TGG + chr1_2:54275320-54275339 None:intergenic 15.0%
!! ATTCAAAAACAATAACAATA+TGG + chr1_2:54275360-54275379 None:intergenic 15.0%
!!! TTGTAAAATATTTTGCTCTT+AGG + chr1_2:54268716-54268735 None:intergenic 20.0%
!! TAAATCCTAACAAAAAGATA+TGG + chr1_2:54268956-54268975 None:intergenic 20.0%
!! TAGCTAATAATAACAATTCA+TGG + chr1_2:54269003-54269022 None:intergenic 20.0%
!!! TATAGAACTTTAGAGTAAAA+AGG - chr1_2:54269079-54269098 Msa0077390:CDS 20.0%
!!! ATAGAACTTTAGAGTAAAAA+GGG - chr1_2:54269080-54269099 Msa0077390:CDS 20.0%
!! TTATTCTGTAAAAGATTGAA+GGG - chr1_2:54269103-54269122 Msa0077390:CDS 20.0%
!!! GTGAGAAAACTTATTTTTTA+AGG - chr1_2:54269277-54269296 Msa0077390:CDS 20.0%
!!! TATAGTTGTAGATAACTTTT+TGG - chr1_2:54269309-54269328 Msa0077390:CDS 20.0%
!!! AAGAAGAAAAGTATTATAGA+AGG - chr1_2:54269347-54269366 Msa0077390:CDS 20.0%
!! AACACATATCAAAACAAAAA+TGG - chr1_2:54269774-54269793 Msa0077390:CDS 20.0%
!! TCTTATAAGAAAATTGTGAT+TGG + chr1_2:54270081-54270100 None:intergenic 20.0%
!! TCTGAGTATAATAAATCAAA+TGG - chr1_2:54270825-54270844 Msa0077390:CDS 20.0%
!! TTAATTGCACGTAATATATA+TGG + chr1_2:54271056-54271075 None:intergenic 20.0%
!!! ATAAGAGATCTTTTAAATTG+TGG + chr1_2:54271088-54271107 None:intergenic 20.0%
!!! AAAAGTGTATTATTAGTAAC+CGG + chr1_2:54271396-54271415 None:intergenic 20.0%
!! ATGCTCAATTAATGTATTAT+TGG + chr1_2:54271439-54271458 None:intergenic 20.0%
!! TTGAATGATCTCTATATATT+TGG - chr1_2:54271553-54271572 Msa0077390:intron 20.0%
!! TACCAACTGAAATATATTTA+CGG + chr1_2:54271652-54271671 None:intergenic 20.0%
!! ATATTCTCTCACAATAAATA+AGG + chr1_2:54271886-54271905 None:intergenic 20.0%
!!! TTTTTTTCATCTTTTCTACA+TGG - chr1_2:54272238-54272257 Msa0077390:intron 20.0%
!!! AATGATTTTTGTCTTCTTTT+CGG - chr1_2:54272365-54272384 Msa0077390:intron 20.0%
!!! TTTTTCAAAGTATTAAGAAC+TGG - chr1_2:54272608-54272627 Msa0077390:intron 20.0%
!! TAATAATTCAGTGTAATGAT+AGG + chr1_2:54273204-54273223 None:intergenic 20.0%
!!! ATTTTGTTACATCTAATTCA+TGG + chr1_2:54273320-54273339 None:intergenic 20.0%
!!! GTTTATGTGATTTTTCTTTA+GGG + chr1_2:54273467-54273486 None:intergenic 20.0%
!!! AGTTTATGTGATTTTTCTTT+AGG + chr1_2:54273468-54273487 None:intergenic 20.0%
!! TTTATATCCAAGATAATGTA+GGG - chr1_2:54273553-54273572 Msa0077390:intron 20.0%
!! AAATATATATACCTCAATGT+TGG + chr1_2:54273825-54273844 None:intergenic 20.0%
!! TTGAATATAATAACATGTGT+CGG + chr1_2:54273942-54273961 None:intergenic 20.0%
!! ATGCAATAACTTATTCTATA+AGG + chr1_2:54275264-54275283 None:intergenic 20.0%
!! ATAAGTTATTGCATCTATAT+AGG - chr1_2:54275270-54275289 Msa0077390:CDS 20.0%
!!! ATTTTTAGAATTCACATAGT+AGG - chr1_2:54275378-54275397 Msa0077390:exon 20.0%
!!! TTTTTACAAGAAGAATATCA+AGG - chr1_2:54275505-54275524 Msa0077390:five_prime_UTR 20.0%
! ATTATCAATAGAATGCATGT+GGG + chr1_2:54268667-54268686 None:intergenic 25.0%
!!! AATAGTATTTTGACAAAGAG+AGG - chr1_2:54268734-54268753 Msa0077390:three_prime_UTR 25.0%
!! AATCTCCATATCTTTTTGTT+AGG - chr1_2:54268948-54268967 Msa0077390:CDS 25.0%
! GTTATTCTGTAAAAGATTGA+AGG - chr1_2:54269102-54269121 Msa0077390:CDS 25.0%
! ATACTTCAACATGTATTCAT+TGG - chr1_2:54269138-54269157 Msa0077390:CDS 25.0%
!!! ACTAATTCTGAAATTCAAAG+AGG - chr1_2:54269165-54269184 Msa0077390:CDS 25.0%
!!! CTAATTCTGAAATTCAAAGA+GGG - chr1_2:54269166-54269185 Msa0077390:CDS 25.0%
!!! GACTGTTTTTTTTTAAGGAA+AGG + chr1_2:54269415-54269434 None:intergenic 25.0%
!!! TGGAAGACTGTTTTTTTTTA+AGG + chr1_2:54269420-54269439 None:intergenic 25.0%
! GATAGAAAATAAAATGTGCA+GGG + chr1_2:54269443-54269462 None:intergenic 25.0%
! TGATAGAAAATAAAATGTGC+AGG + chr1_2:54269444-54269463 None:intergenic 25.0%
! TTCTATCATATTTGATCCAA+TGG - chr1_2:54269456-54269475 Msa0077390:CDS 25.0%
! AGAAAAGAAAATCTTACCAT+TGG + chr1_2:54269475-54269494 None:intergenic 25.0%
!! GGTAAGATTTTCTTTTCTAA+TGG - chr1_2:54269477-54269496 Msa0077390:CDS 25.0%
! ATAAATTGGTCATACATGAT+GGG - chr1_2:54269516-54269535 Msa0077390:CDS 25.0%
!! ACATCTTTATGACCATTTTA+TGG + chr1_2:54269748-54269767 None:intergenic 25.0%
!!! TAAACTTATTTTGTTGCGTT+TGG + chr1_2:54269846-54269865 None:intergenic 25.0%
!! GTATGAAGTATTTGAAAGAA+TGG - chr1_2:54270215-54270234 Msa0077390:intron 25.0%
! TTTGAAAGAATGGCATATTA+TGG - chr1_2:54270225-54270244 Msa0077390:intron 25.0%
!! TAATTTTAAATACACCCCAT+GGG - chr1_2:54270698-54270717 Msa0077390:CDS 25.0%
! TTTATTATACTCAGAACCTA+GGG + chr1_2:54270820-54270839 None:intergenic 25.0%
! ATTTATTATACTCAGAACCT+AGG + chr1_2:54270821-54270840 None:intergenic 25.0%
!!! ATTTGAAATCCACAGATTTT+TGG - chr1_2:54270882-54270901 Msa0077390:CDS 25.0%
! TATAAAGTTCAATTCTCCTA+AGG - chr1_2:54271155-54271174 Msa0077390:intron 25.0%
!!! GAAAGTTTTGTATGCAATTA+CGG - chr1_2:54271177-54271196 Msa0077390:intron 25.0%
! GCTTCAAAGATTAATCTATA+CGG - chr1_2:54271209-54271228 Msa0077390:intron 25.0%
!!! ATTTACACTTTAAGATGAAC+AGG + chr1_2:54271722-54271741 None:intergenic 25.0%
! AGAGTGATATGTTTGATATT+TGG - chr1_2:54272036-54272055 Msa0077390:intron 25.0%
! AAAAATCACCAAATATCACA+TGG + chr1_2:54272223-54272242 None:intergenic 25.0%
! TGCTCTAATAACATTGTTAA+AGG + chr1_2:54272318-54272337 None:intergenic 25.0%
!!! TTCTTAGTTTTCTTTCTCTT+TGG - chr1_2:54272434-54272453 Msa0077390:intron 25.0%
!!! TCTTAGTTTTCTTTCTCTTT+GGG - chr1_2:54272435-54272454 Msa0077390:intron 25.0%
!! CATACATAAGCATTTTCTTT+TGG + chr1_2:54272566-54272585 None:intergenic 25.0%
! AAAAATACATCAAAGGTAGT+AGG - chr1_2:54272656-54272675 Msa0077390:intron 25.0%
! TCATATTAAAGATTCGATAG+TGG - chr1_2:54272728-54272747 Msa0077390:intron 25.0%
!! TGAATGTTAAGAACTTTTAG+TGG + chr1_2:54272837-54272856 None:intergenic 25.0%
! TAACATTCAATCTCAAGATA+AGG - chr1_2:54272848-54272867 Msa0077390:intron 25.0%
! TTTAATTGCTTGATCTGTAT+TGG - chr1_2:54273229-54273248 Msa0077390:intron 25.0%
!! TTACAATTAGCTGTGTTTTA+TGG - chr1_2:54273357-54273376 Msa0077390:intron 25.0%
!!! AACTTTCATTTTTCAATTGG+TGG - chr1_2:54273484-54273503 Msa0077390:intron 25.0%
! TAGAACAGTATTAGCAAAAA+GGG + chr1_2:54273532-54273551 None:intergenic 25.0%
! GTTTATATCCAAGATAATGT+AGG - chr1_2:54273552-54273571 Msa0077390:intron 25.0%
! TATAGTTCTTTAGTATCATC+AGG + chr1_2:54273741-54273760 None:intergenic 25.0%
! AGAACTATATGAACTTGATA+TGG - chr1_2:54273752-54273771 Msa0077390:intron 25.0%
!!! TGTAGTTTTACTTTGAGAAA+TGG - chr1_2:54274050-54274069 Msa0077390:intron 25.0%
! GGTTAACTATGTTTAATAGA+TGG - chr1_2:54274142-54274161 Msa0077390:intron 25.0%
! AAGAGACAAAACAAATGTTA+AGG - chr1_2:54274471-54274490 Msa0077390:intron 25.0%
! TGTTCTTCACACAATTATTA+TGG - chr1_2:54274751-54274770 Msa0077390:intron 25.0%
! AGCAAAATGAAAATACTCAA+AGG + chr1_2:54274854-54274873 None:intergenic 25.0%
! TCATATTCTTCAACTACATT+AGG - chr1_2:54274977-54274996 Msa0077390:intron 25.0%
!! TTACAAGGCTTTATGTATAT+AGG - chr1_2:54275167-54275186 Msa0077390:intron 25.0%
!! TACAAGGCTTTATGTATATA+GGG - chr1_2:54275168-54275187 Msa0077390:intron 25.0%
TTATCAATAGAATGCATGTG+GGG + chr1_2:54268666-54268685 None:intergenic 30.0%
GATTATCAATAGAATGCATG+TGG + chr1_2:54268668-54268687 None:intergenic 30.0%
GAGAGAGAGATAAATATTTG+TGG - chr1_2:54268773-54268792 Msa0077390:three_prime_UTR 30.0%
GTTGAGTAAACAAAAGTTGA+AGG - chr1_2:54268797-54268816 Msa0077390:three_prime_UTR 30.0%
CAAAAGTTGAAGGATAACTA+TGG - chr1_2:54268807-54268826 Msa0077390:three_prime_UTR 30.0%
CATGGTGTAACAATTATTCA+TGG + chr1_2:54268985-54269004 None:intergenic 30.0%
CATAAATTGGTCATACATGA+TGG - chr1_2:54269515-54269534 Msa0077390:CDS 30.0%
TAAATTGGTCATACATGATG+GGG - chr1_2:54269517-54269536 Msa0077390:CDS 30.0%
CATCATGTAGGATAATACTT+TGG + chr1_2:54269703-54269722 None:intergenic 30.0%
!!! ATTGAGCATCGAAATGTTTT+TGG - chr1_2:54270174-54270193 Msa0077390:intron 30.0%
AAGTAACAATGTCACCAATT+GGG - chr1_2:54270308-54270327 Msa0077390:intron 30.0%
! TAATATAGGTGTCATCCAAA+TGG + chr1_2:54270340-54270359 None:intergenic 30.0%
ATTTGGATGACACCTATATT+AGG - chr1_2:54270339-54270358 Msa0077390:intron 30.0%
ATTTCTTACCGAGAGATAAA+TGG + chr1_2:54270421-54270440 None:intergenic 30.0%
! CTCAAACTGAATAAAGTACT+AGG + chr1_2:54270567-54270586 None:intergenic 30.0%
TTCAGTTTGAGTCTCATAAT+AGG - chr1_2:54270576-54270595 Msa0077390:CDS 30.0%
! GTAATTTTAAATACACCCCA+TGG - chr1_2:54270697-54270716 Msa0077390:CDS 30.0%
TTGCATACAAAACTTTCCTT+AGG + chr1_2:54271174-54271193 None:intergenic 30.0%
AAATGAATTAGCAAGCAAGT+TGG - chr1_2:54271256-54271275 Msa0077390:intron 30.0%
! CTATGCTATAGTCAACATTT+TGG - chr1_2:54271297-54271316 Msa0077390:intron 30.0%
AAGGATAAGTTTCAAATGAC+TGG + chr1_2:54271518-54271537 None:intergenic 30.0%
TCAATGATACTACAAAGTCA+AGG + chr1_2:54271537-54271556 None:intergenic 30.0%
CTCCGTAAATATATTTCAGT+TGG - chr1_2:54271647-54271666 Msa0077390:intron 30.0%
TAGAGTCAGTGTTCTAATAT+GGG - chr1_2:54271688-54271707 Msa0077390:intron 30.0%
TCGGAGAGAATAACAAATTT+AGG - chr1_2:54271992-54272011 Msa0077390:intron 30.0%
CGGAGAGAATAACAAATTTA+GGG - chr1_2:54271993-54272012 Msa0077390:intron 30.0%
AAATATCACGTGTCAAACAA+GGG + chr1_2:54272085-54272104 None:intergenic 30.0%
TGCTATAAGAACATTGTCAA+AGG + chr1_2:54272186-54272205 None:intergenic 30.0%
AAGAATCTTATAGCTAACAG+TGG - chr1_2:54272946-54272965 Msa0077390:intron 30.0%
ATAGTTAAACCAGTTATAGC+AGG + chr1_2:54273094-54273113 None:intergenic 30.0%
TAGGGTGAAAATCATCAAAT+TGG + chr1_2:54273449-54273468 None:intergenic 30.0%
CTAGAACAGTATTAGCAAAA+AGG + chr1_2:54273533-54273552 None:intergenic 30.0%
TCAATTATGATATTCTTGGC+AGG - chr1_2:54273618-54273637 Msa0077390:intron 30.0%
GGCAATTTGTGTCTATAAAA+GGG + chr1_2:54273648-54273667 None:intergenic 30.0%
AGGCAATTTGTGTCTATAAA+AGG + chr1_2:54273649-54273668 None:intergenic 30.0%
! TACTTTCCATTTTCTCAAAG+AGG + chr1_2:54273712-54273731 None:intergenic 30.0%
ACATGTACACTTCAAATTGA+AGG - chr1_2:54273874-54273893 Msa0077390:CDS 30.0%
ACACATATCAATGTTAGACA+TGG - chr1_2:54273906-54273925 Msa0077390:CDS 30.0%
AACTTCATTGACCACAAATT+TGG - chr1_2:54274207-54274226 Msa0077390:intron 30.0%
!! CTAAAAGTGTTGTCAAAACA+CGG + chr1_2:54274233-54274252 None:intergenic 30.0%
! ATTATTTAGGTTCCTAGACA+AGG - chr1_2:54274391-54274410 Msa0077390:intron 30.0%
ATTTGTTCCAAGTACAATGA+TGG - chr1_2:54274517-54274536 Msa0077390:intron 30.0%
!!! TGTTCCTTGTTTTACAAAGA+GGG + chr1_2:54274555-54274574 None:intergenic 30.0%
!!! TTGTTCCTTGTTTTACAAAG+AGG + chr1_2:54274556-54274575 None:intergenic 30.0%
GCATAATCCTTACAAAGAAA+CGG + chr1_2:54274673-54274692 None:intergenic 30.0%
ATTACCCTTCTTCAAAGAAT+GGG - chr1_2:54274719-54274738 Msa0077390:intron 30.0%
! AATTCCCATTCTTTGAAGAA+GGG + chr1_2:54274726-54274745 None:intergenic 30.0%
CATCTGTGACAGAAAATTAT+AGG - chr1_2:54274780-54274799 Msa0077390:intron 30.0%
AGAAAATTATAGGCTTAGAG+TGG - chr1_2:54274790-54274809 Msa0077390:intron 30.0%
CTTCCTCAGTTTATACTTAT+GGG - chr1_2:54274872-54274891 Msa0077390:intron 30.0%
! TTTCTTTTCCTTCAGTTCAT+TGG + chr1_2:54275224-54275243 None:intergenic 30.0%
TGAATAGAATGAGCTCAAAA+GGG + chr1_2:54275458-54275477 None:intergenic 30.0%
ATGAATAGAATGAGCTCAAA+AGG + chr1_2:54275459-54275478 None:intergenic 30.0%
TTTCTCTTCTTTCCTATCCA+AGG - chr1_2:54268688-54268707 Msa0077390:three_prime_UTR 35.0%
TTCTCTTCTTTCCTATCCAA+GGG - chr1_2:54268689-54268708 Msa0077390:three_prime_UTR 35.0%
TTGAAGGATAACTATGGAAG+AGG - chr1_2:54268813-54268832 Msa0077390:three_prime_UTR 35.0%
TGAAGGATAACTATGGAAGA+GGG - chr1_2:54268814-54268833 Msa0077390:three_prime_UTR 35.0%
! AAAGCTTGTTCCTTTGTTGT+TGG - chr1_2:54268922-54268941 Msa0077390:exon 35.0%
! GGAGATTTTACCAACAACAA+AGG + chr1_2:54268935-54268954 None:intergenic 35.0%
! AGATTGAAGGGTGATAATGA+TGG - chr1_2:54269115-54269134 Msa0077390:CDS 35.0%
! CTTCTCTCATTTCTCTCTTT+TGG + chr1_2:54269209-54269228 None:intergenic 35.0%
CAAAAGAGAGAAATGAGAGA+AGG - chr1_2:54269207-54269226 Msa0077390:CDS 35.0%
AGAAAATAAAATGTGCAGGG+TGG + chr1_2:54269440-54269459 None:intergenic 35.0%
ATTAAATCTGAGCCACACAA+AGG + chr1_2:54269571-54269590 None:intergenic 35.0%
TGACAGGTAATACATCATGT+AGG + chr1_2:54269715-54269734 None:intergenic 35.0%
CACACTCGTTTACCATAAAA+TGG - chr1_2:54269733-54269752 Msa0077390:CDS 35.0%
TTCACCAATGACGAATTGTT+CGG - chr1_2:54269905-54269924 Msa0077390:intron 35.0%
! TTTTCCGAACAATTCGTCAT+TGG + chr1_2:54269912-54269931 None:intergenic 35.0%
ACGAATTGTTCGGAAAAATC+TGG - chr1_2:54269915-54269934 Msa0077390:intron 35.0%
CGAATTGTTCGGAAAAATCT+GGG - chr1_2:54269916-54269935 Msa0077390:intron 35.0%
TTCCTGAGTGAAACAATTCT+TGG - chr1_2:54269944-54269963 Msa0077390:intron 35.0%
CAAGTAACAATGTCACCAAT+TGG - chr1_2:54270307-54270326 Msa0077390:intron 35.0%
GCAACATAAGCACCTAATAT+AGG + chr1_2:54270354-54270373 None:intergenic 35.0%
AGTTTGAGTCTCATAATAGG+AGG - chr1_2:54270579-54270598 Msa0077390:CDS 35.0%
ATGTCCACAGATTGCATTTA+AGG - chr1_2:54270611-54270630 Msa0077390:CDS 35.0%
TCAACCTTAAATGCAATCTG+TGG + chr1_2:54270618-54270637 None:intergenic 35.0%
ATGCAAGAGGATACAAACAT+GGG + chr1_2:54270664-54270683 None:intergenic 35.0%
CCATCTAACATGTTACATGT+GGG + chr1_2:54270757-54270776 None:intergenic 35.0%
CCACATGTAACATGTTAGAT+GGG - chr1_2:54270755-54270774 Msa0077390:CDS 35.0%
CAAGATTCAACCAAGATCTT+TGG - chr1_2:54270779-54270798 Msa0077390:CDS 35.0%
AATGTTTGGCCAAAAATCTG+TGG + chr1_2:54270894-54270913 None:intergenic 35.0%
!!! ACAGATTTTTGGCCAAACAT+TGG - chr1_2:54270893-54270912 Msa0077390:CDS 35.0%
AATTCGAACTTTACGTCGTT+TGG + chr1_2:54271118-54271137 None:intergenic 35.0%
! TGCTTGCTAATTCATTTGTG+TGG + chr1_2:54271253-54271272 None:intergenic 35.0%
! GCTATAGTCAACATTTTGGA+TGG - chr1_2:54271301-54271320 Msa0077390:intron 35.0%
GTAGAGTCAGTGTTCTAATA+TGG - chr1_2:54271687-54271706 Msa0077390:intron 35.0%
!! ACACTTTAAGATGAACAGGT+GGG + chr1_2:54271718-54271737 None:intergenic 35.0%
!! TACACTTTAAGATGAACAGG+TGG + chr1_2:54271719-54271738 None:intergenic 35.0%
CAAATATCACGTGTCAAACA+AGG + chr1_2:54272086-54272105 None:intergenic 35.0%
CTTGTTTGACACGTGATATT+TGG - chr1_2:54272084-54272103 Msa0077390:intron 35.0%
AACATGCTCCATGTGATATT+TGG - chr1_2:54272212-54272231 Msa0077390:intron 35.0%
!! TTAAAGATTCGATAGTGGAC+TGG - chr1_2:54272733-54272752 Msa0077390:intron 35.0%
! AACACTGCAAGACATTTTGT+TGG + chr1_2:54272777-54272796 None:intergenic 35.0%
!! CTTGAAAATTTGCTGCATGT+GGG + chr1_2:54272805-54272824 None:intergenic 35.0%
!! ACTTGAAAATTTGCTGCATG+TGG + chr1_2:54272806-54272825 None:intergenic 35.0%
TCAATCTCAAGATAAGGACA+TGG - chr1_2:54272854-54272873 Msa0077390:intron 35.0%
AAAGTCAATCCTGCTATAAC+TGG - chr1_2:54273082-54273101 Msa0077390:intron 35.0%
TTCAGTGTAATGATAGGTGT+CGG + chr1_2:54273198-54273217 None:intergenic 35.0%
ACATCTAATTCATGGCATTG+TGG + chr1_2:54273312-54273331 None:intergenic 35.0%
CACAGCTAATTGTAATGTAG+AGG + chr1_2:54273352-54273371 None:intergenic 35.0%
AAACCCAACATATCAACCAT+TGG - chr1_2:54273417-54273436 Msa0077390:intron 35.0%
TGGATGTTTAGCATCTTCTT+TGG - chr1_2:54273504-54273523 Msa0077390:intron 35.0%
GGATGTTTAGCATCTTCTTT+GGG - chr1_2:54273505-54273524 Msa0077390:intron 35.0%
ATATCCAAGATAATGTAGGG+TGG - chr1_2:54273556-54273575 Msa0077390:intron 35.0%
GATATTGCTAATCCTAGAGT+TGG + chr1_2:54273600-54273619 None:intergenic 35.0%
TACTTTCACTAGAATGGCTA+GGG - chr1_2:54273677-54273696 Msa0077390:intron 35.0%
! TAGTTGCCTCTTTGAGAAAA+TGG - chr1_2:54273703-54273722 Msa0077390:intron 35.0%
! ATGGAAGAGTATGCTAAGAA+AGG - chr1_2:54273771-54273790 Msa0077390:intron 35.0%
! TGGAAGAGTATGCTAAGAAA+GGG - chr1_2:54273772-54273791 Msa0077390:intron 35.0%
TTGATTCTACTCCAACATTG+AGG - chr1_2:54273811-54273830 Msa0077390:CDS 35.0%
! TGAAGTACTAACACAAACGT+CGG + chr1_2:54274015-54274034 None:intergenic 35.0%
AGTACTTCATCTCTACTTGA+CGG - chr1_2:54274026-54274045 Msa0077390:intron 35.0%
! ACTTCCGCAACAACTTTTTA+AGG - chr1_2:54274097-54274116 Msa0077390:intron 35.0%
! CTTCCGCAACAACTTTTTAA+GGG - chr1_2:54274098-54274117 Msa0077390:intron 35.0%
!! TTCCGCAACAACTTTTTAAG+GGG - chr1_2:54274099-54274118 Msa0077390:intron 35.0%
AACCCCTTAAAAAGTTGTTG+CGG + chr1_2:54274104-54274123 None:intergenic 35.0%
!!! AATTTTTTAAGGGGTTCACG+TGG + chr1_2:54274272-54274291 None:intergenic 35.0%
GTTAAGGATGATTCCAATCT+TGG - chr1_2:54274487-54274506 Msa0077390:intron 35.0%
ACAAATGTAGCAACCAAGAT+TGG + chr1_2:54274503-54274522 None:intergenic 35.0%
AACACCCTCTTTGTAAAACA+AGG - chr1_2:54274548-54274567 Msa0077390:intron 35.0%
TCTATGACCGTTTCTTTGTA+AGG - chr1_2:54274663-54274682 Msa0077390:intron 35.0%
TCTTTGTAAGGATTATGCAG+AGG - chr1_2:54274675-54274694 Msa0077390:intron 35.0%
GATTACCCTTCTTCAAAGAA+TGG - chr1_2:54274718-54274737 Msa0077390:intron 35.0%
! CAATTCCCATTCTTTGAAGA+AGG + chr1_2:54274727-54274746 None:intergenic 35.0%
CTTCTTCAAAGAATGGGAAT+TGG - chr1_2:54274725-54274744 Msa0077390:intron 35.0%
GAACATGGTTTAGTTGAAAG+TGG - chr1_2:54274818-54274837 Msa0077390:intron 35.0%
GCTTCCTCAGTTTATACTTA+TGG - chr1_2:54274871-54274890 Msa0077390:intron 35.0%
GTTCCCATAAGTATAAACTG+AGG + chr1_2:54274878-54274897 None:intergenic 35.0%
!! AACAGCTGATGCATTTTTAG+AGG - chr1_2:54274895-54274914 Msa0077390:intron 35.0%
TCTTCAACTACATTAGGCAT+TGG - chr1_2:54274983-54275002 Msa0077390:intron 35.0%
ACTAAGGAACATGGTCATAA+AGG - chr1_2:54275049-54275068 Msa0077390:intron 35.0%
CTAAGGAACATGGTCATAAA+GGG - chr1_2:54275050-54275069 Msa0077390:intron 35.0%
TGTATATAGGGCTGAAGTTT+CGG - chr1_2:54275180-54275199 Msa0077390:intron 35.0%
TGAACTGAAGGAAAAGAAAG+CGG - chr1_2:54275225-54275244 Msa0077390:intron 35.0%
CTTATTCTATAAGGTTCGCA+TGG + chr1_2:54275255-54275274 None:intergenic 35.0%
! TATTTTGCTCTTAGGTCCCT+TGG + chr1_2:54268708-54268727 None:intergenic 40.0%
GATGGAACTGTGAATCTCAA+AGG - chr1_2:54268865-54268884 Msa0077390:three_prime_UTR 40.0%
!!! CCAGTTTTGGATCTAAGAAC+AGG + chr1_2:54268895-54268914 None:intergenic 40.0%
CCTGTTCTTAGATCCAAAAC+TGG - chr1_2:54268892-54268911 Msa0077390:three_prime_UTR 40.0%
GTTCTTAGATCCAAAACTGG+TGG - chr1_2:54268895-54268914 Msa0077390:three_prime_UTR 40.0%
TTAGATCCAAAACTGGTGGT+TGG - chr1_2:54268899-54268918 Msa0077390:three_prime_UTR 40.0%
ATATTGCTCTCCTACAAGTG+TGG - chr1_2:54269235-54269254 Msa0077390:CDS 40.0%
! CTCTCATTTTCCACACTTGT+AGG + chr1_2:54269248-54269267 None:intergenic 40.0%
GTGGCTCAGATTTAATGTCA+CGG + chr1_2:54269604-54269623 None:intergenic 40.0%
TTAAATCTGGGCCACACAAA+GGG + chr1_2:54269659-54269678 None:intergenic 40.0%
ATTAAATCTGGGCCACACAA+AGG + chr1_2:54269660-54269679 None:intergenic 40.0%
GTCACCGTGACATTAAATCT+GGG + chr1_2:54269560-54269579 None:intergenic 40.0%
TGTCACCGTGACATTAAATC+TGG + chr1_2:54269559-54269578 None:intergenic 40.0%
TTATGGTAAACGAGTGTGAC+AGG + chr1_2:54269731-54269750 None:intergenic 40.0%
ACCAAGAAATTGAGCTCAGA+TGG - chr1_2:54269873-54269892 Msa0077390:intron 40.0%
ACCATCTGAGCTCAATTTCT+TGG + chr1_2:54269877-54269896 None:intergenic 40.0%
ATGGTAATCCAGAGTGAGTT+CGG + chr1_2:54269992-54270011 None:intergenic 40.0%
!! TACATAGCGCTGGTTGAAAA+TGG + chr1_2:54270017-54270036 None:intergenic 40.0%
AACAATGTCACCAATTGGGT+TGG - chr1_2:54270312-54270331 Msa0077390:intron 40.0%
ACAATGTCACCAATTGGGTT+GGG - chr1_2:54270313-54270332 Msa0077390:intron 40.0%
GAAAAGTCCAAAAACGACCA+AGG + chr1_2:54270386-54270405 None:intergenic 40.0%
TGCATCCTCCATTTATCTCT+CGG - chr1_2:54270410-54270429 Msa0077390:CDS 40.0%
TCTTACCGAGAGATAAATGG+AGG + chr1_2:54270418-54270437 None:intergenic 40.0%
ATACAAACATGGGTAGGATG+AGG + chr1_2:54270654-54270673 None:intergenic 40.0%
AAGAGGATACAAACATGGGT+AGG + chr1_2:54270660-54270679 None:intergenic 40.0%
CATGCAAGAGGATACAAACA+TGG + chr1_2:54270665-54270684 None:intergenic 40.0%
CATGTTTGTATCCTCTTGCA+TGG - chr1_2:54270663-54270682 Msa0077390:CDS 40.0%
TGTATCCTCTTGCATGGTAT+TGG - chr1_2:54270669-54270688 Msa0077390:CDS 40.0%
ATAAGCTGGACAAAGCTATG+GGG + chr1_2:54270725-54270744 None:intergenic 40.0%
GATAAGCTGGACAAAGCTAT+GGG + chr1_2:54270726-54270745 None:intergenic 40.0%
AGATAAGCTGGACAAAGCTA+TGG + chr1_2:54270727-54270746 None:intergenic 40.0%
ACATGTTACATGTGGGAGTT+GGG + chr1_2:54270750-54270769 None:intergenic 40.0%
AACATGTTACATGTGGGAGT+TGG + chr1_2:54270751-54270770 None:intergenic 40.0%
CCCACATGTAACATGTTAGA+TGG - chr1_2:54270754-54270773 Msa0077390:CDS 40.0%
CCCATCTAACATGTTACATG+TGG + chr1_2:54270758-54270777 None:intergenic 40.0%
CAACCAAGATCTTTGGCTAT+TGG - chr1_2:54270786-54270805 Msa0077390:CDS 40.0%
!! TTGGCCAAACATTGGTTCTA+TGG - chr1_2:54270901-54270920 Msa0077390:CDS 40.0%
GTTGCCATAGAACCAATGTT+TGG + chr1_2:54270908-54270927 None:intergenic 40.0%
TACTAGGCTGCTTGCATAAT+TGG + chr1_2:54271349-54271368 None:intergenic 40.0%
AATTATGCAAGCAGCCTAGT+AGG - chr1_2:54271348-54271367 Msa0077390:intron 40.0%
!! TGCTGTTGACTTATCCTACT+AGG + chr1_2:54271365-54271384 None:intergenic 40.0%
GAATCAAACTCACTGTGACT+AGG + chr1_2:54272689-54272708 None:intergenic 40.0%
! TTGCAGCATGCTCAATGTTT+TGG - chr1_2:54272988-54273007 Msa0077390:intron 40.0%
ATGATCTCACAGACACTTCT+CGG - chr1_2:54273131-54273150 Msa0077390:intron 40.0%
TGATCTGTATTGGAACATGC+AGG - chr1_2:54273239-54273258 Msa0077390:intron 40.0%
GATCTGTATTGGAACATGCA+GGG - chr1_2:54273240-54273259 Msa0077390:intron 40.0%
TCTAATTCATGGCATTGTGG+TGG + chr1_2:54273309-54273328 None:intergenic 40.0%
GCACTTTACACTCTAGCAAT+AGG - chr1_2:54273381-54273400 Msa0077390:intron 40.0%
TACACTCTAGCAATAGGAAC+AGG - chr1_2:54273387-54273406 Msa0077390:intron 40.0%
! GCACCAATGGTTGATATGTT+GGG + chr1_2:54273423-54273442 None:intergenic 40.0%
! AGCACCAATGGTTGATATGT+TGG + chr1_2:54273424-54273443 None:intergenic 40.0%
ATCAAATTGGTCAGCACCAA+TGG + chr1_2:54273436-54273455 None:intergenic 40.0%
GGATATGCTTTACCAACTCT+AGG - chr1_2:54273585-54273604 Msa0077390:intron 40.0%
TATAGACACAAATTGCCTGC+AGG - chr1_2:54273651-54273670 Msa0077390:intron 40.0%
ATAGACACAAATTGCCTGCA+GGG - chr1_2:54273652-54273671 Msa0077390:intron 40.0%
!! AGGGAGTACTTTCACTAGAA+TGG - chr1_2:54273671-54273690 Msa0077390:intron 40.0%
GTACTTTCACTAGAATGGCT+AGG - chr1_2:54273676-54273695 Msa0077390:intron 40.0%
! TTGCGGAAGTCGTCTAAAAT+TGG + chr1_2:54274087-54274106 None:intergenic 40.0%
GTTAACGCAGTTCAAATAGG+TGG - chr1_2:54274121-54274140 Msa0077390:intron 40.0%
TCAAAACACGGCCAAATTTG+TGG + chr1_2:54274221-54274240 None:intergenic 40.0%
! TTTTGACACTTGCCTTGTCT+AGG + chr1_2:54274406-54274425 None:intergenic 40.0%
GTAACTGTGCATAACATCCA+TGG + chr1_2:54274443-54274462 None:intergenic 40.0%
ACTTGAGCCATCATTGTACT+TGG + chr1_2:54274527-54274546 None:intergenic 40.0%
ACAACACTTGACAGACACAT+TGG - chr1_2:54274572-54274591 Msa0077390:intron 40.0%
ACAAATGCAGCTAAACTTGC+TGG + chr1_2:54274614-54274633 None:intergenic 40.0%
AGGTTAACCAAGAATCCAAG+AGG - chr1_2:54274695-54274714 Msa0077390:intron 40.0%
GGTTAACCAAGAATCCAAGA+GGG - chr1_2:54274696-54274715 Msa0077390:intron 40.0%
CTTAGAGTGGCAAAAGAACA+TGG - chr1_2:54274803-54274822 Msa0077390:intron 40.0%
CATGGTTTAGTTGAAAGTGG+AGG - chr1_2:54274821-54274840 Msa0077390:intron 40.0%
CCAATACTCTTCATGCTTTC+TGG + chr1_2:54274953-54274972 None:intergenic 40.0%
! CCAGAAAGCATGAAGAGTAT+TGG - chr1_2:54274950-54274969 Msa0077390:intron 40.0%
GACTGTATCGCGTATAACTA+AGG - chr1_2:54275033-54275052 Msa0077390:intron 40.0%
TCGCGTATAACTAAGGAACA+TGG - chr1_2:54275040-54275059 Msa0077390:intron 40.0%
! TTACTACTACGCGTTTTTCG+CGG - chr1_2:54275108-54275127 Msa0077390:intron 40.0%
TCTTCTTCGCGATTGTTACA+AGG - chr1_2:54275152-54275171 Msa0077390:intron 40.0%
! AAGGAGGAGTACACAGAAGA+TGG - chr1_2:54268847-54268866 Msa0077390:three_prime_UTR 45.0%
! AGCTTTCCAACCACCAGTTT+TGG + chr1_2:54268908-54268927 None:intergenic 45.0%
! ATTGGTCATACATGATGGGG+TGG - chr1_2:54269520-54269539 Msa0077390:CDS 45.0%
! ACACAAAGGTGTGTGTTGTG+TGG + chr1_2:54269586-54269605 None:intergenic 45.0%
ACACAACACACACCTTTGTG+TGG - chr1_2:54269585-54269604 Msa0077390:CDS 45.0%
TGTCACCCATACAACACATC+TGG - chr1_2:54269619-54269638 Msa0077390:CDS 45.0%
GTCACCCATACAACACATCT+GGG - chr1_2:54269620-54269639 Msa0077390:CDS 45.0%
ACACAAAGGGTTGTGTTGTG+TGG + chr1_2:54269646-54269665 None:intergenic 45.0%
ACACAACACAACCCTTTGTG+TGG - chr1_2:54269645-54269664 Msa0077390:CDS 45.0%
GTGGCCCAGATTTAATGTCA+CGG - chr1_2:54269664-54269683 Msa0077390:CDS 45.0%
GGCCAAGAATTGTTTCACTC+AGG + chr1_2:54269949-54269968 None:intergenic 45.0%
TCAACCAGCGCTATGTAGAA+AGG - chr1_2:54270020-54270039 Msa0077390:intron 45.0%
TAGACCTTTCTACATAGCGC+TGG + chr1_2:54270027-54270046 None:intergenic 45.0%
GAAGCTTCTTTGTGAGGAAG+AGG + chr1_2:54270269-54270288 None:intergenic 45.0%
CTTGGTGAAGCTTCTTTGTG+AGG + chr1_2:54270275-54270294 None:intergenic 45.0%
CTCACAAAGAAGCTTCACCA+AGG - chr1_2:54270273-54270292 Msa0077390:intron 45.0%
TACTTGCAGTCACTGTTCCT+TGG + chr1_2:54270293-54270312 None:intergenic 45.0%
TATGTTGCTGATGCTCACCT+TGG - chr1_2:54270366-54270385 Msa0077390:intron 45.0%
!! ATGCTCACCTTGGTCGTTTT+TGG - chr1_2:54270376-54270395 Msa0077390:CDS 45.0%
! ATCCTCTTGCATGGTATTGG+CGG - chr1_2:54270672-54270691 Msa0077390:CDS 45.0%
GTGCCAATAGCCAAAGATCT+TGG + chr1_2:54270792-54270811 None:intergenic 45.0%
TGTTGGACCTTAAGAACCCT+TGG + chr1_2:54272760-54272779 None:intergenic 45.0%
TCACAGACACTTCTCGGATT+AGG - chr1_2:54273137-54273156 Msa0077390:intron 45.0%
!! GTAATGATAGGTGTCGGTGT+CGG + chr1_2:54273192-54273211 None:intergenic 45.0%
ACTCTAGCAATAGGAACAGG+TGG - chr1_2:54273390-54273409 Msa0077390:intron 45.0%
GAGTCCACCCTACATTATCT+TGG + chr1_2:54273563-54273582 None:intergenic 45.0%
! GATAATGTAGGGTGGACTCT+TGG - chr1_2:54273564-54273583 Msa0077390:intron 45.0%
GGGGTTAACGCAGTTCAAAT+AGG - chr1_2:54274118-54274137 Msa0077390:intron 45.0%
GACAAGGCAAGTGTCAAAAC+AGG - chr1_2:54274407-54274426 Msa0077390:intron 45.0%
AAACAGGCTCAACTAGTCCA+TGG - chr1_2:54274423-54274442 Msa0077390:intron 45.0%
!! AATGCAGCTAAACTTGCTGG+TGG + chr1_2:54274611-54274630 None:intergenic 45.0%
GAGCACTACACAAACAAGCA+AGG + chr1_2:54274645-54274664 None:intergenic 45.0%
GGTAATCCCTCTTGGATTCT+TGG + chr1_2:54274705-54274724 None:intergenic 45.0%
TGAAGAAGGGTAATCCCTCT+TGG + chr1_2:54274713-54274732 None:intergenic 45.0%
TACGCGATACAGTCGACAAA+AGG + chr1_2:54275027-54275046 None:intergenic 45.0%
AGGAACATGGTCATAAAGGG+TGG - chr1_2:54275053-54275072 Msa0077390:intron 45.0%
CATGCTTGCCAATGAACTGA+AGG - chr1_2:54275213-54275232 Msa0077390:intron 45.0%
!! AATATTAAAAGTAATTAAAT+TGG - chr1_2:54271901-54271920 Msa0077390:intron 5.0%
TGCTCTTAGGTCCCTTGGAT+AGG + chr1_2:54268703-54268722 None:intergenic 50.0%
! TACATGATGGGGTGGCACTT+TGG - chr1_2:54269528-54269547 Msa0077390:CDS 50.0%
GTGGCCCAGATGTGTTGTAT+GGG + chr1_2:54269627-54269646 None:intergenic 50.0%
TGTGGCCCAGATGTGTTGTA+TGG + chr1_2:54269628-54269647 None:intergenic 50.0%
GTCGTGAGATAAGGACAGTC+TGG + chr1_2:54269970-54269989 None:intergenic 50.0%
GTGAGTTCGGTCGTGAGATA+AGG + chr1_2:54269979-54269998 None:intergenic 50.0%
!! GCGCTGGTTGAAAATGGTCA+TGG + chr1_2:54270011-54270030 None:intergenic 50.0%
CCAAATGGTCCCAACCCAAT+TGG + chr1_2:54270325-54270344 None:intergenic 50.0%
!! CCAATTGGGTTGGGACCATT+TGG - chr1_2:54270322-54270341 Msa0077390:intron 50.0%
!! TCCTCTTGCATGGTATTGGC+GGG - chr1_2:54270673-54270692 Msa0077390:CDS 50.0%
ACAAAGCTATGGGGTCCCAT+GGG + chr1_2:54270716-54270735 None:intergenic 50.0%
GCTATTGGCACATGTTCCCT+AGG - chr1_2:54270801-54270820 Msa0077390:CDS 50.0%
AGTCAACAGCAGCTATCGAC+CGG - chr1_2:54271374-54271393 Msa0077390:intron 50.0%
!! TTCGATAGTGGACTGGACCA+AGG - chr1_2:54272740-54272759 Msa0077390:intron 50.0%
!! TCGATAGTGGACTGGACCAA+GGG - chr1_2:54272741-54272760 Msa0077390:intron 50.0%
GACTGGACCAAGGGTTCTTA+AGG - chr1_2:54272750-54272769 Msa0077390:intron 50.0%
ATAAGGACATGGTGCTCCTG+TGG - chr1_2:54272865-54272884 Msa0077390:intron 50.0%
TAAGGACATGGTGCTCCTGT+GGG - chr1_2:54272866-54272885 Msa0077390:intron 50.0%
! TTCTCGGATTAGGCGTGTTC+TGG - chr1_2:54273147-54273166 Msa0077390:intron 50.0%
GATTAGGCGTGTTCTGGTGT+CGG - chr1_2:54273153-54273172 Msa0077390:intron 50.0%
CATTGTGGTGGCTTCAAGGT+AGG + chr1_2:54273297-54273316 None:intergenic 50.0%
ATGGCATTGTGGTGGCTTCA+AGG + chr1_2:54273301-54273320 None:intergenic 50.0%
!! CTAGTGAAAGTACTCCCTGC+AGG + chr1_2:54273669-54273688 None:intergenic 50.0%
GGAAGAGGGCAGAGTAGTGA+AGG - chr1_2:54268828-54268847 Msa0077390:three_prime_UTR 55.0%
AGAGGGCAGAGTAGTGAAGG+AGG - chr1_2:54268831-54268850 Msa0077390:three_prime_UTR 55.0%
TCTCACGACCGAACTCACTC+TGG - chr1_2:54269981-54270000 Msa0077390:intron 55.0%
TCCCGCCAATACCATGCAAG+AGG + chr1_2:54270677-54270696 None:intergenic 55.0%
CAAAGCTATGGGGTCCCATG+GGG + chr1_2:54270715-54270734 None:intergenic 55.0%
GACAAAGCTATGGGGTCCCA+TGG + chr1_2:54270717-54270736 None:intergenic 55.0%
GTGGGAGTTGGGAGATAAGC+TGG + chr1_2:54270739-54270758 None:intergenic 55.0%
AAGGACATGGTGCTCCTGTG+GGG - chr1_2:54272867-54272886 Msa0077390:intron 55.0%
!! TCCTGTGGGGCTAGTGGGTT+GGG - chr1_2:54272880-54272899 Msa0077390:intron 60.0%
TGGTGCTCCTGTGGGGCTAG+TGG - chr1_2:54272874-54272893 Msa0077390:intron 65.0%
! GGTGCTCCTGTGGGGCTAGT+GGG - chr1_2:54272875-54272894 Msa0077390:intron 65.0%
! CTCCTGTGGGGCTAGTGGGT+TGG - chr1_2:54272879-54272898 Msa0077390:intron 65.0%
TCCCAACCCACTAGCCCCAC+AGG + chr1_2:54272884-54272903 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54268641 54275563 54268641 ID=Msa0077390;Name=Msa0077390
chr1_2 mRNA 54268641 54275563 54268641 ID=Msa0077390-mRNA-1;Parent=Msa0077390;Name=Msa0077390-mRNA-1;_AED=0.25;_eAED=0.25;_QI=185|0.5|0.8|1|1|1|5|290|623
chr1_2 exon 54268641 54269804 54268641 ID=Msa0077390-mRNA-1:exon:16773;Parent=Msa0077390-mRNA-1
chr1_2 exon 54270372 54270943 54270372 ID=Msa0077390-mRNA-1:exon:16772;Parent=Msa0077390-mRNA-1
chr1_2 exon 54271036 54271125 54271036 ID=Msa0077390-mRNA-1:exon:16771;Parent=Msa0077390-mRNA-1
chr1_2 exon 54273773 54273990 54273773 ID=Msa0077390-mRNA-1:exon:16770;Parent=Msa0077390-mRNA-1
chr1_2 exon 54275261 54275563 54275261 ID=Msa0077390-mRNA-1:exon:16769;Parent=Msa0077390-mRNA-1
chr1_2 five_prime_UTR 54275379 54275563 54275379 ID=Msa0077390-mRNA-1:five_prime_utr;Parent=Msa0077390-mRNA-1
chr1_2 CDS 54275261 54275378 54275261 ID=Msa0077390-mRNA-1:cds;Parent=Msa0077390-mRNA-1
chr1_2 CDS 54273773 54273990 54273773 ID=Msa0077390-mRNA-1:cds;Parent=Msa0077390-mRNA-1
chr1_2 CDS 54271036 54271125 54271036 ID=Msa0077390-mRNA-1:cds;Parent=Msa0077390-mRNA-1
chr1_2 CDS 54270372 54270943 54270372 ID=Msa0077390-mRNA-1:cds;Parent=Msa0077390-mRNA-1
chr1_2 CDS 54268931 54269804 54268931 ID=Msa0077390-mRNA-1:cds;Parent=Msa0077390-mRNA-1
chr1_2 three_prime_UTR 54268641 54268930 54268641 ID=Msa0077390-mRNA-1:three_prime_utr;Parent=Msa0077390-mRNA-1
Gene Sequence

>Msa0077390

ATGGAAGAGGGCAGAGTAGTGAAGGAGGAGTACACAGAAGATGGAACTGTGAATCTCAAAGGAAAACCTGTTCTTAGATCCAAAACTGGTGGTTGGAAAGCTTGTTCCTTTGTTGTTGTGTATGAAGTATTTGAAAGAATGGCATATTATGGAATATCATCGAATTTGATCCTCTTCCTCACAAAGAAGCTTCACCAAGGAACAGTGACTGCAAGTAACAATGTCACCAATTGGGTTGGGACCATTTGGATGACACCTATATTAGGTGCTTATGTTGCTGATGCTCACCTTGGTCGTTTTTGGACTTTTCTCATTGCATCCTCCATTTATCTCTCGGTCAAAGTCAATCCTGCTATAACTGGTTTAACTATTATGTCATCAATTTTTAATGATCTCACAGACACTTCTCGGATTAGGCGTGTTCTGGGTATGTCTCTGCTTACACTAGCAGTGTCACTTCCTACCTTGAAGCCACCACAATGCCATGAATTAGATGTAACAAAATGCAAAAAAGCCTCTACATTACAATTAGCTGTGTTTTATGGTGCACTTTACACTCTAGCAATAGGAACAGGTGGAACAAAACCCAACATATCAACCATTGGTGCTGACCAATTTGATGATTTTCACCCTAAAGAAAAATCACATAAACTTTCATTTTTCAATTGGTGGATGTTTAGCATCTTCTTTGGGACCCTTTTTGCTAATACTGTTCTAGTTTATATCCAAGATAATGTAGGGTGGACTCTTGGATATGCTTTACCAACTCTAGGATTAGCAATATCAATTATGATATTCTTGGCAGGAACACCCTTTTATAGACACAAATTGCCTGCAGGGAGTACTTTCACTAGAATGGCTAGGGTTATAGTTGCCTCTTTGAGAAAATGGAAAGTACATGTTCCTGATGATACTAAAGAACTATATGAACTTGATATGGAAGAGTATGCTAAGAAAGGGAGTAACACTTACAGAATTGATTCTACTCCAACATTGAGGTTCCTAGACAAGGCAAGTGTCAAAACAGGCTCAACTAGTCCATGGATGTTATGCACAGTTACACATGTAGAAGAGACAAAACAAATGTTAAGGATGATTCCAATCTTGGTTGCTACATTTGTTCCAAGTACAATGATGGCTCAAGTAAACACCCTCTTTGTAAAACAAGGAACAACACTTGACAGACACATTGGAAGCTTCAAAATTCCACCAGCAAGTTTAGCTGCATTTGTCACATTGTCCTTGCTTGTTTGTGTAGTGCTCTATGACCGTTTCTTTGTAAGGATTATGCAGAGGTTAACCAAGAATCCAAGAGGGATTACCCTTCTTCAAAGAATGGGAATTGGTCTTGTTCTTCACACAATTATTATGGTAGTTGCATCTGTGACAGAAAATTATAGGCTTAGAGTGGCAAAAGAACATGGTTTAGTTGAAAGTGGAGGACAAGTTCCTTTGAGTATTTTCATTTTGCTTCCTCAGTTTATACTTATGGGAACAGCTGATGCATTTTTAGAGGTTGCGAAAATCGAGTTTTTCTATGATCAAGCTCCAGAAAGCATGAAGAGTATTGGAACTTCATATTCTTCAACTACATTAGGCATTGGAAATTTCATCAGTTCATTCCTTTTGTCGACTGTATCGCGTATAACTAAGGAACATGGTCATAAAGGGTGGATTTTGAACAATCTGAATGATTCTCATCTTGATTACTACTACGCGTTTTTCGCGGTGTTGAACTTCTTGAACTTAATCTTCTTCGCGATTGTTACAAGGCTTTATGTATATAGGGCTGAAGTTTCGGATTCTATAGACATGCTTGCCAATGAACTGAAGGAAAAGAAAGCGGTTAACCATGCGAACCTTATAGAATAA
Protein sequence

>Msa0077390

MEEGRVVKEEYTEDGTVNLKGKPVLRSKTGGWKACSFVVVYEVFERMAYYGISSNLILFLTKKLHQGTVTASNNVTNWVGTIWMTPILGAYVADAHLGRFWTFLIASSIYLSVKVNPAITGLTIMSSIFNDLTDTSRIRRVLGMSLLTLAVSLPTLKPPQCHELDVTKCKKASTLQLAVFYGALYTLAIGTGGTKPNISTIGADQFDDFHPKEKSHKLSFFNWWMFSIFFGTLFANTVLVYIQDNVGWTLGYALPTLGLAISIMIFLAGTPFYRHKLPAGSTFTRMARVIVASLRKWKVHVPDDTKELYELDMEEYAKKGSNTYRIDSTPTLRFLDKASVKTGSTSPWMLCTVTHVEETKQMLRMIPILVATFVPSTMMAQVNTLFVKQGTTLDRHIGSFKIPPASLAAFVTLSLLVCVVLYDRFFVRIMQRLTKNPRGITLLQRMGIGLVLHTIIMVVASVTENYRLRVAKEHGLVESGGQVPLSIFILLPQFILMGTADAFLEVAKIEFFYDQAPESMKSIGTSYSSTTLGIGNFISSFLLSTVSRITKEHGHKGWILNNLNDSHLDYYYAFFAVLNFLNLIFFAIVTRLYVYRAEVSDSIDMLANELKEKKAVNHANLIE*