Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911990 | XP_013451912.1 | 63.399 | 153 | 17 | 3 | 1 | 135 | 11 | 142 | 2.22e-53 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0911990 | 0.844285 | 8.310567e-59 | -8.615850e-47 |
| Msa0005050 | Msa0911990 | 0.826172 | 3.138272e-54 | -8.615850e-47 |
| Msa0016120 | Msa0911990 | 0.820674 | 6.054665e-53 | -8.615850e-47 |
| Msa0036430 | Msa0911990 | 0.823102 | 1.659710e-53 | -8.615850e-47 |
| Msa0053110 | Msa0911990 | 0.838515 | 2.747101e-57 | -8.615850e-47 |
| Msa0062440 | Msa0911990 | 0.817243 | 3.647798e-52 | -8.615850e-47 |
| Msa0072810 | Msa0911990 | 0.818516 | 1.881635e-52 | -8.615850e-47 |
| Msa0084500 | Msa0911990 | 0.813955 | 1.969419e-51 | -8.615850e-47 |
| Msa0098440 | Msa0911990 | 0.831560 | 1.557644e-55 | -8.615850e-47 |
| Msa0103000 | Msa0911990 | 0.832076 | 1.161791e-55 | -8.615850e-47 |
| Msa0106790 | Msa0911990 | 0.812912 | 3.339531e-51 | -8.615850e-47 |
| Msa0110970 | Msa0911990 | 0.822445 | 2.360193e-53 | -8.615850e-47 |
| Msa0118400 | Msa0911990 | 0.806842 | 6.760119e-50 | -8.615850e-47 |
| Msa0620240 | Msa0911990 | 0.818914 | 1.528329e-52 | -8.615850e-47 |
| Msa0641250 | Msa0911990 | 0.807871 | 4.090424e-50 | -8.615850e-47 |
| Msa0685330 | Msa0911990 | 0.812312 | 4.515754e-51 | -8.615850e-47 |
| Msa0707220 | Msa0911990 | 0.849147 | 3.897413e-60 | -8.615850e-47 |
| Msa0741900 | Msa0911990 | 0.808142 | 3.581766e-50 | -8.615850e-47 |
| Msa0747780 | Msa0911990 | 0.836188 | 1.083144e-56 | -8.615850e-47 |
| Msa0764820 | Msa0911990 | 0.807677 | 4.497092e-50 | -8.615850e-47 |
| Msa0802840 | Msa0911990 | 0.800732 | 1.255544e-48 | -8.615850e-47 |
| Msa0822990 | Msa0911990 | 0.814019 | 1.906264e-51 | -8.615850e-47 |
| Msa0833040 | Msa0911990 | 0.802424 | 5.647484e-49 | -8.615850e-47 |
| Msa0130570 | Msa0911990 | 0.820296 | 7.393406e-53 | -8.615850e-47 |
| Msa0141600 | Msa0911990 | 0.822236 | 2.638358e-53 | -8.615850e-47 |
| Msa0147560 | Msa0911990 | 0.819837 | 9.417656e-53 | -8.615850e-47 |
| Msa0153420 | Msa0911990 | 0.819374 | 1.200852e-52 | -8.615850e-47 |
| Msa0161680 | Msa0911990 | 0.802340 | 5.876949e-49 | -8.615850e-47 |
| Msa0176470 | Msa0911990 | 0.803423 | 3.510932e-49 | -8.615850e-47 |
| Msa0203030 | Msa0911990 | 0.846299 | 2.370554e-59 | -8.615850e-47 |
| Msa0203160 | Msa0911990 | 0.808981 | 2.370751e-50 | -8.615850e-47 |
| Msa0219190 | Msa0911990 | 0.840198 | 1.004529e-57 | -8.615850e-47 |
| Msa0370600 | Msa0911990 | 0.803727 | 3.036726e-49 | -8.615850e-47 |
| Msa0378500 | Msa0911990 | 0.803272 | 3.772531e-49 | -8.615850e-47 |
| Msa0392420 | Msa0911990 | 0.804886 | 1.741953e-49 | -8.615850e-47 |
| Msa0413930 | Msa0911990 | 0.825059 | 5.761925e-54 | -8.615850e-47 |
| Msa0418200 | Msa0911990 | 0.810327 | 1.217795e-50 | -8.615850e-47 |
| Msa0436460 | Msa0911990 | 0.801542 | 8.571250e-49 | -8.615850e-47 |
| Msa0436500 | Msa0911990 | 0.863719 | 2.036149e-64 | -8.615850e-47 |
| Msa0444010 | Msa0911990 | 0.807407 | 5.131328e-50 | -8.615850e-47 |
| Msa0464540 | Msa0911990 | 0.800707 | 1.270057e-48 | -8.615850e-47 |
| Msa0298240 | Msa0911990 | 0.827838 | 1.254305e-54 | -8.615850e-47 |
| Msa0337850 | Msa0911990 | 0.821421 | 4.073510e-53 | -8.615850e-47 |
| Msa0351770 | Msa0911990 | 0.806025 | 1.004843e-49 | -8.615850e-47 |
| Msa0487570 | Msa0911990 | 0.808540 | 2.945052e-50 | -8.615850e-47 |
| Msa0537920 | Msa0911990 | 0.807939 | 3.955321e-50 | -8.615850e-47 |
| Msa0538220 | Msa0911990 | 0.813296 | 2.749737e-51 | -8.615850e-47 |
| Msa0844560 | Msa0911990 | 0.802877 | 4.553307e-49 | -8.615850e-47 |
| Msa0862100 | Msa0911990 | 0.827514 | 1.500428e-54 | -8.615850e-47 |
| Msa0867350 | Msa0911990 | 0.852861 | 3.496214e-61 | -8.615850e-47 |
| Msa0872310 | Msa0911990 | 0.829657 | 4.552416e-55 | -8.615850e-47 |
| Msa0873190 | Msa0911990 | 0.805275 | 1.443920e-49 | -8.615850e-47 |
| Msa0880440 | Msa0911990 | 0.808711 | 2.707763e-50 | -8.615850e-47 |
| Msa0885060 | Msa0911990 | 0.858849 | 6.212288e-63 | -8.615850e-47 |
| Msa0898730 | Msa0911990 | 0.844751 | 6.225371e-59 | -8.615850e-47 |
| Msa0905550 | Msa0911990 | 0.836606 | 8.478832e-57 | -8.615850e-47 |
| Msa0906370 | Msa0911990 | 0.805952 | 1.041018e-49 | -8.615850e-47 |
| Msa0911990 | Msa0937550 | 0.817111 | 3.906960e-52 | -8.615850e-47 |
| Msa0911990 | Msa0938430 | 0.800031 | 1.743740e-48 | -8.615850e-47 |
| Msa0911990 | Msa0974750 | 0.802947 | 4.404629e-49 | -8.615850e-47 |
| Msa0911990 | Msa0975580 | 0.809465 | 1.866756e-50 | -8.615850e-47 |
| Msa0911990 | Msa1014270 | 0.804693 | 1.911601e-49 | -8.615850e-47 |
| Msa0911990 | Msa1018790 | 0.805120 | 1.556178e-49 | -8.615850e-47 |
| Msa0911990 | Msa1033560 | 0.806008 | 1.013339e-49 | -8.615850e-47 |
| Msa0911990 | Msa1041530 | 0.823347 | 1.454907e-53 | -8.615850e-47 |
| Msa0911990 | Msa1055260 | 0.805805 | 1.117987e-49 | -8.615850e-47 |
| Msa0911990 | Msa1055280 | 0.808452 | 3.076343e-50 | -8.615850e-47 |
| Msa0911990 | Msa1055500 | 0.802416 | 5.670155e-49 | -8.615850e-47 |
| Msa0911990 | Msa1081570 | 0.824542 | 7.627837e-54 | -8.615850e-47 |
| Msa0911990 | Msa1097640 | 0.809454 | 1.877004e-50 | -8.615850e-47 |
| Msa0911990 | Msa1123880 | 0.815141 | 1.076193e-51 | -8.615850e-47 |
| Msa0911990 | Msa1127140 | 0.833401 | 5.447262e-56 | -8.615850e-47 |
| Msa0911990 | Msa1133000 | 0.818450 | 1.947840e-52 | -8.615850e-47 |
| Msa0911990 | Msa1139810 | 0.829107 | 6.192892e-55 | -8.615850e-47 |
| Msa0911990 | Msa1145020 | 0.829413 | 5.220488e-55 | -8.615850e-47 |
| Msa0911990 | Msa1166400 | 0.828508 | 8.648873e-55 | -8.615850e-47 |
| Msa0911990 | Msa1196080 | 0.814193 | 1.745083e-51 | -8.615850e-47 |
| Msa0911990 | Msa1221560 | 0.802892 | 4.521934e-49 | -8.615850e-47 |
| Msa0911990 | Msa1228980 | 0.805114 | 1.560830e-49 | -8.615850e-47 |
| Msa0911990 | Msa1355400 | 0.807585 | 4.705337e-50 | -8.615850e-47 |
| Msa0911990 | Msa1374550 | 0.808734 | 2.677318e-50 | -8.615850e-47 |
| Msa0911990 | Msa1379990 | 0.815982 | 6.994585e-52 | -8.615850e-47 |
| Msa0911990 | Msa1414930 | 0.800141 | 1.656309e-48 | -8.615850e-47 |
| Msa0911990 | Msa1420060 | 0.852838 | 3.549706e-61 | -8.615850e-47 |
| Msa0911990 | Msa1421550 | 0.810997 | 8.724738e-51 | -8.615850e-47 |
| Msa0911990 | Msa1455590 | 0.861445 | 1.020546e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0911990 | MtrunA17_Chr6g0464801 | 44.828 | 87 | 23 | 2 | 53 | 135 | 7 | 72 | 2.82e-13 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACATTTGCTTCTTCATT+TGG | 0.284164 | 6_2:+19529695 | None:intergenic |
| TTATCAGCACTTTGATAGTT+AGG | 0.296935 | 6_2:-19528727 | Msa0911990:CDS |
| GTACTAAGATCTGATCTTCT+TGG | 0.327969 | 6_2:+19528659 | None:intergenic |
| GTACTAAGATCTGATCTTCT+TGG | 0.327969 | 6_2:+19528695 | None:intergenic |
| GAAACTTTCTTCAAATGTCT+AGG | 0.440784 | 6_2:-19529611 | Msa0911990:CDS |
| CTTAGTATTGGAAGAGGTCC+AGG | 0.443199 | 6_2:-19528581 | Msa0911990:CDS |
| AAACTTTCTTCAAATGTCTA+GGG | 0.469767 | 6_2:-19529610 | Msa0911990:CDS |
| GGAAGATCAGATCTTAGTAC+TGG | 0.477627 | 6_2:-19528629 | Msa0911990:CDS |
| GATGCAGAAGAGAATCTTGA+TGG | 0.479422 | 6_2:-19529578 | Msa0911990:CDS |
| AGAAGATCAGATCTTAGTAT+TGG | 0.495981 | 6_2:-19528593 | Msa0911990:CDS |
| ACAAATGCTGAATTAATCCC+TGG | 0.505603 | 6_2:+19528563 | None:intergenic |
| TCAGATCTTAGTACTGGAAG+AGG | 0.510467 | 6_2:-19528650 | Msa0911990:CDS |
| AGAAGATCAGATCTTAGTAC+TGG | 0.511957 | 6_2:-19528656 | Msa0911990:CDS |
| AGAAGATCAGATCTTAGTAC+TGG | 0.511957 | 6_2:-19528692 | Msa0911990:CDS |
| AAAGAATGGTCAACGAGTAA+TGG | 0.539417 | 6_2:-19529530 | Msa0911990:CDS |
| TTTGGAGTAAAGAACATGGA+TGG | 0.540921 | 6_2:+19529642 | None:intergenic |
| TCAGATCTTAGTACTGGAAG+AGG | 0.548826 | 6_2:-19528623 | Msa0911990:CDS |
| TCAGATCTTAGTACTGGAAG+AGG | 0.548826 | 6_2:-19528686 | Msa0911990:CDS |
| ACTTTGATAGTTAGGAGAGA+TGG | 0.558375 | 6_2:-19528719 | Msa0911990:CDS |
| TCAGATCTTAGTATTGGAAG+AGG | 0.585484 | 6_2:-19528587 | Msa0911990:CDS |
| AAGCAAATGTTACAAATGAG+AGG | 0.594342 | 6_2:-19529685 | Msa0911990:CDS |
| GATCTTAGTACTGGAAGAGG+TGG | 0.595804 | 6_2:-19528683 | Msa0911990:CDS |
| GATCTTAGTACTGGAAGAGG+TGG | 0.621063 | 6_2:-19528620 | Msa0911990:CDS |
| TTAGTATTGGAAGAGGTCCA+GGG | 0.652914 | 6_2:-19528580 | Msa0911990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTATTTATTTTTTT+GGG | + | chr6_2:19529198-19529217 | None:intergenic | 0.0% |
| !!! | TAATTATTTATTTATTTTTT+TGG | + | chr6_2:19529199-19529218 | None:intergenic | 0.0% |
| !!! | AATTATTTATTTATTTTTTT+GGG | + | chr6_2:19529198-19529217 | None:intergenic | 0.0% |
| !!! | TAATTATTTATTTATTTTTT+TGG | + | chr6_2:19529199-19529218 | None:intergenic | 0.0% |
| !! | AGTAAAAAAAATGATTAATT+TGG | - | chr6_2:19528909-19528928 | Msa0911990:intron | 10.0% |
| !! | TATAAATGTGTTAAAAATAT+GGG | + | chr6_2:19529159-19529178 | None:intergenic | 10.0% |
| !! | TTATAAATGTGTTAAAAATA+TGG | + | chr6_2:19529160-19529179 | None:intergenic | 10.0% |
| !! | AGTAAAAAAAATGATTAATT+TGG | - | chr6_2:19528909-19528928 | Msa0911990:intron | 10.0% |
| !! | TATAAATGTGTTAAAAATAT+GGG | + | chr6_2:19529159-19529178 | None:intergenic | 10.0% |
| !! | TTATAAATGTGTTAAAAATA+TGG | + | chr6_2:19529160-19529179 | None:intergenic | 10.0% |
| !!! | AATTAAGAGTTGATATTTTT+AGG | - | chr6_2:19528954-19528973 | Msa0911990:intron | 15.0% |
| !!! | ATTAAGAGTTGATATTTTTA+GGG | - | chr6_2:19528955-19528974 | Msa0911990:intron | 15.0% |
| !!! | AATTAAGAGTTGATATTTTT+AGG | - | chr6_2:19528954-19528973 | Msa0911990:intron | 15.0% |
| !!! | ATTAAGAGTTGATATTTTTA+GGG | - | chr6_2:19528955-19528974 | Msa0911990:intron | 15.0% |
| !!! | AGAAAGTTTCAAGAAATTTT+TGG | + | chr6_2:19528648-19528667 | None:intergenic | 20.0% |
| !! | AAGAAAAAGAGAATACAAAT+CGG | + | chr6_2:19529514-19529533 | None:intergenic | 20.0% |
| !!! | AGAAAGTTTCAAGAAATTTT+TGG | + | chr6_2:19528648-19528667 | None:intergenic | 20.0% |
| !! | AAGAAAAAGAGAATACAAAT+CGG | + | chr6_2:19529514-19529533 | None:intergenic | 20.0% |
| !!! | AATTTTTGGAGTAAAGAACA+TGG | + | chr6_2:19528634-19528653 | None:intergenic | 25.0% |
| ! | AAACTTTCTTCAAATGTCTA+GGG | - | chr6_2:19528659-19528678 | Msa0911990:CDS | 25.0% |
| !!! | AATGTTAACTTGTGTCATTT+TGG | - | chr6_2:19528979-19528998 | Msa0911990:intron | 25.0% |
| ! | ACAACTAAATGTTAGTATGT+TGG | - | chr6_2:19529234-19529253 | Msa0911990:intron | 25.0% |
| !! | TTCAGATTAAGTTGTTAATG+AGG | - | chr6_2:19529292-19529311 | Msa0911990:intron | 25.0% |
| !!! | AGTTGTTAATGAGGTTTTTT+TGG | - | chr6_2:19529301-19529320 | Msa0911990:intron | 25.0% |
| ! | AGGTTAAACACAAATCATTT+AGG | - | chr6_2:19529428-19529447 | Msa0911990:intron | 25.0% |
| !! | CATTTAGGAAAATCGAATTT+TGG | - | chr6_2:19529443-19529462 | Msa0911990:intron | 25.0% |
| !! | ATATTCTAGAGAAAGATTGT+TGG | + | chr6_2:19529471-19529490 | None:intergenic | 25.0% |
| !!! | AATTTTTGGAGTAAAGAACA+TGG | + | chr6_2:19528634-19528653 | None:intergenic | 25.0% |
| ! | AAACTTTCTTCAAATGTCTA+GGG | - | chr6_2:19528659-19528678 | Msa0911990:CDS | 25.0% |
| !!! | AATGTTAACTTGTGTCATTT+TGG | - | chr6_2:19528979-19528998 | Msa0911990:intron | 25.0% |
| ! | ACAACTAAATGTTAGTATGT+TGG | - | chr6_2:19529234-19529253 | Msa0911990:intron | 25.0% |
| !! | TTCAGATTAAGTTGTTAATG+AGG | - | chr6_2:19529292-19529311 | Msa0911990:intron | 25.0% |
| !!! | AGTTGTTAATGAGGTTTTTT+TGG | - | chr6_2:19529301-19529320 | Msa0911990:intron | 25.0% |
| ! | AGGTTAAACACAAATCATTT+AGG | - | chr6_2:19529428-19529447 | Msa0911990:intron | 25.0% |
| !! | CATTTAGGAAAATCGAATTT+TGG | - | chr6_2:19529443-19529462 | Msa0911990:intron | 25.0% |
| !! | ATATTCTAGAGAAAGATTGT+TGG | + | chr6_2:19529471-19529490 | None:intergenic | 25.0% |
| GTAACATTTGCTTCTTCATT+TGG | + | chr6_2:19528577-19528596 | None:intergenic | 30.0% | |
| AAGCAAATGTTACAAATGAG+AGG | - | chr6_2:19528584-19528603 | Msa0911990:CDS | 30.0% | |
| TGGATGGTAAAGATAAAAAG+TGG | + | chr6_2:19528614-19528633 | None:intergenic | 30.0% | |
| GAAACTTTCTTCAAATGTCT+AGG | - | chr6_2:19528658-19528677 | Msa0911990:CDS | 30.0% | |
| TTTCTTAACTTATGCCCTAA+GGG | - | chr6_2:19529118-19529137 | Msa0911990:intron | 30.0% | |
| ! | TTAGTATGTTGGTGAATATG+TGG | - | chr6_2:19529245-19529264 | Msa0911990:intron | 30.0% |
| ACAACTTAATCTGAATGACT+TGG | + | chr6_2:19529287-19529306 | None:intergenic | 30.0% | |
| ! | CTGTATCGTTCCAATTTTAT+CGG | - | chr6_2:19529378-19529397 | Msa0911990:intron | 30.0% |
| ! | TTATCAGCACTTTGATAGTT+AGG | - | chr6_2:19529542-19529561 | Msa0911990:CDS | 30.0% |
| AGAAGATCAGATCTTAGTAT+TGG | - | chr6_2:19529676-19529695 | Msa0911990:CDS | 30.0% | |
| GTAACATTTGCTTCTTCATT+TGG | + | chr6_2:19528577-19528596 | None:intergenic | 30.0% | |
| AAGCAAATGTTACAAATGAG+AGG | - | chr6_2:19528584-19528603 | Msa0911990:CDS | 30.0% | |
| TGGATGGTAAAGATAAAAAG+TGG | + | chr6_2:19528614-19528633 | None:intergenic | 30.0% | |
| GAAACTTTCTTCAAATGTCT+AGG | - | chr6_2:19528658-19528677 | Msa0911990:CDS | 30.0% | |
| TTTCTTAACTTATGCCCTAA+GGG | - | chr6_2:19529118-19529137 | Msa0911990:intron | 30.0% | |
| ! | TTAGTATGTTGGTGAATATG+TGG | - | chr6_2:19529245-19529264 | Msa0911990:intron | 30.0% |
| ACAACTTAATCTGAATGACT+TGG | + | chr6_2:19529287-19529306 | None:intergenic | 30.0% | |
| ! | CTGTATCGTTCCAATTTTAT+CGG | - | chr6_2:19529378-19529397 | Msa0911990:intron | 30.0% |
| ! | TTATCAGCACTTTGATAGTT+AGG | - | chr6_2:19529542-19529561 | Msa0911990:CDS | 30.0% |
| AGAAGATCAGATCTTAGTAT+TGG | - | chr6_2:19529676-19529695 | Msa0911990:CDS | 30.0% | |
| ! | TTTGGAGTAAAGAACATGGA+TGG | + | chr6_2:19528630-19528649 | None:intergenic | 35.0% |
| CATGTGCAGAACAAAAAGAA+TGG | - | chr6_2:19528725-19528744 | Msa0911990:CDS | 35.0% | |
| AAAGAATGGTCAACGAGTAA+TGG | - | chr6_2:19528739-19528758 | Msa0911990:intron | 35.0% | |
| !!! | AACTTGTGTCATTTTGGTAC+AGG | - | chr6_2:19528985-19529004 | Msa0911990:intron | 35.0% |
| GTTTCTTAACTTATGCCCTA+AGG | - | chr6_2:19529117-19529136 | Msa0911990:intron | 35.0% | |
| !! | TATGTTAACTTGTGCCCTTA+GGG | + | chr6_2:19529135-19529154 | None:intergenic | 35.0% |
| !! | TTATGTTAACTTGTGCCCTT+AGG | + | chr6_2:19529136-19529155 | None:intergenic | 35.0% |
| !! | CTGAATGACTTGGTTCTATA+AGG | + | chr6_2:19529277-19529296 | None:intergenic | 35.0% |
| TCATTAACAACTGTCTCTTC+GGG | + | chr6_2:19529409-19529428 | None:intergenic | 35.0% | |
| CTCATTAACAACTGTCTCTT+CGG | + | chr6_2:19529410-19529429 | None:intergenic | 35.0% | |
| ! | ACTTTGATAGTTAGGAGAGA+TGG | - | chr6_2:19529550-19529569 | Msa0911990:CDS | 35.0% |
| GTACTAAGATCTGATCTTCT+TGG | + | chr6_2:19529577-19529596 | None:intergenic | 35.0% | |
| AGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529577-19529596 | Msa0911990:CDS | 35.0% | |
| GTACTAAGATCTGATCTTCT+TGG | + | chr6_2:19529577-19529596 | None:intergenic | 35.0% | |
| AGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529577-19529596 | Msa0911990:CDS | 35.0% | |
| ! | TCAGATCTTAGTATTGGAAG+AGG | - | chr6_2:19529682-19529701 | Msa0911990:CDS | 35.0% |
| ACAAATGCTGAATTAATCCC+TGG | + | chr6_2:19529709-19529728 | None:intergenic | 35.0% | |
| ! | TTTGGAGTAAAGAACATGGA+TGG | + | chr6_2:19528630-19528649 | None:intergenic | 35.0% |
| CATGTGCAGAACAAAAAGAA+TGG | - | chr6_2:19528725-19528744 | Msa0911990:CDS | 35.0% | |
| AAAGAATGGTCAACGAGTAA+TGG | - | chr6_2:19528739-19528758 | Msa0911990:intron | 35.0% | |
| !!! | AACTTGTGTCATTTTGGTAC+AGG | - | chr6_2:19528985-19529004 | Msa0911990:intron | 35.0% |
| GTTTCTTAACTTATGCCCTA+AGG | - | chr6_2:19529117-19529136 | Msa0911990:intron | 35.0% | |
| !! | TATGTTAACTTGTGCCCTTA+GGG | + | chr6_2:19529135-19529154 | None:intergenic | 35.0% |
| !! | TTATGTTAACTTGTGCCCTT+AGG | + | chr6_2:19529136-19529155 | None:intergenic | 35.0% |
| !! | CTGAATGACTTGGTTCTATA+AGG | + | chr6_2:19529277-19529296 | None:intergenic | 35.0% |
| TCATTAACAACTGTCTCTTC+GGG | + | chr6_2:19529409-19529428 | None:intergenic | 35.0% | |
| CTCATTAACAACTGTCTCTT+CGG | + | chr6_2:19529410-19529429 | None:intergenic | 35.0% | |
| ! | ACTTTGATAGTTAGGAGAGA+TGG | - | chr6_2:19529550-19529569 | Msa0911990:CDS | 35.0% |
| GTACTAAGATCTGATCTTCT+TGG | + | chr6_2:19529577-19529596 | None:intergenic | 35.0% | |
| AGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529577-19529596 | Msa0911990:CDS | 35.0% | |
| GTACTAAGATCTGATCTTCT+TGG | + | chr6_2:19529577-19529596 | None:intergenic | 35.0% | |
| AGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529577-19529596 | Msa0911990:CDS | 35.0% | |
| ! | TCAGATCTTAGTATTGGAAG+AGG | - | chr6_2:19529682-19529701 | Msa0911990:CDS | 35.0% |
| ACAAATGCTGAATTAATCCC+TGG | + | chr6_2:19529709-19529728 | None:intergenic | 35.0% | |
| GATGCAGAAGAGAATCTTGA+TGG | - | chr6_2:19528691-19528710 | Msa0911990:CDS | 40.0% | |
| CATTAACAACTGTCTCTTCG+GGG | + | chr6_2:19529408-19529427 | None:intergenic | 40.0% | |
| CGAAGAGACAGTTGTTAATG+AGG | - | chr6_2:19529408-19529427 | Msa0911990:intron | 40.0% | |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| GGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529640-19529659 | Msa0911990:CDS | 40.0% | |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| ! | TTAGTATTGGAAGAGGTCCA+GGG | - | chr6_2:19529689-19529708 | Msa0911990:CDS | 40.0% |
| GATGCAGAAGAGAATCTTGA+TGG | - | chr6_2:19528691-19528710 | Msa0911990:CDS | 40.0% | |
| CATTAACAACTGTCTCTTCG+GGG | + | chr6_2:19529408-19529427 | None:intergenic | 40.0% | |
| CGAAGAGACAGTTGTTAATG+AGG | - | chr6_2:19529408-19529427 | Msa0911990:intron | 40.0% | |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| GGAAGATCAGATCTTAGTAC+TGG | - | chr6_2:19529640-19529659 | Msa0911990:CDS | 40.0% | |
| ! | TCAGATCTTAGTACTGGAAG+AGG | - | chr6_2:19529583-19529602 | Msa0911990:CDS | 40.0% |
| ! | TTAGTATTGGAAGAGGTCCA+GGG | - | chr6_2:19529689-19529708 | Msa0911990:CDS | 40.0% |
| TCGGGGACATCCGATAAAAT+TGG | + | chr6_2:19529391-19529410 | None:intergenic | 45.0% | |
| ! | GATCTTAGTACTGGAAGAGG+TGG | - | chr6_2:19529586-19529605 | Msa0911990:CDS | 45.0% |
| ! | GATCTTAGTACTGGAAGAGG+TGG | - | chr6_2:19529586-19529605 | Msa0911990:CDS | 45.0% |
| ! | CTTAGTATTGGAAGAGGTCC+AGG | - | chr6_2:19529688-19529707 | Msa0911990:CDS | 45.0% |
| TCGGGGACATCCGATAAAAT+TGG | + | chr6_2:19529391-19529410 | None:intergenic | 45.0% | |
| ! | GATCTTAGTACTGGAAGAGG+TGG | - | chr6_2:19529586-19529605 | Msa0911990:CDS | 45.0% |
| ! | GATCTTAGTACTGGAAGAGG+TGG | - | chr6_2:19529586-19529605 | Msa0911990:CDS | 45.0% |
| ! | CTTAGTATTGGAAGAGGTCC+AGG | - | chr6_2:19529688-19529707 | Msa0911990:CDS | 45.0% |
| !!! | TTTTTGTTTTTTTTTTATTT+TGG | - | chr6_2:19528843-19528862 | Msa0911990:intron | 5.0% |
| !!! | TTTTGTTTTTTTTTTATTTT+GGG | - | chr6_2:19528844-19528863 | Msa0911990:intron | 5.0% |
| !!! | TTTTTGTTTTTTTTTTATTT+TGG | - | chr6_2:19528843-19528862 | Msa0911990:intron | 5.0% |
| !!! | TTTTGTTTTTTTTTTATTTT+GGG | - | chr6_2:19528844-19528863 | Msa0911990:intron | 5.0% |
| TGTGCATATCATCCTTGCGC+AGG | - | chr6_2:19529338-19529357 | Msa0911990:intron | 50.0% | |
| GTGCATATCATCCTTGCGCA+GGG | - | chr6_2:19529339-19529358 | Msa0911990:intron | 50.0% | |
| TGCATATCATCCTTGCGCAG+GGG | - | chr6_2:19529340-19529359 | Msa0911990:intron | 50.0% | |
| TGTGCATATCATCCTTGCGC+AGG | - | chr6_2:19529338-19529357 | Msa0911990:intron | 50.0% | |
| GTGCATATCATCCTTGCGCA+GGG | - | chr6_2:19529339-19529358 | Msa0911990:intron | 50.0% | |
| TGCATATCATCCTTGCGCAG+GGG | - | chr6_2:19529340-19529359 | Msa0911990:intron | 50.0% | |
| ATTAGCATGACCCCTGCGCA+AGG | + | chr6_2:19529353-19529372 | None:intergenic | 55.0% | |
| ATTAGCATGACCCCTGCGCA+AGG | + | chr6_2:19529353-19529372 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 19528559 | 19529732 | 19528559 | ID=Msa0911990;Name=Msa0911990 |
| chr6_2 | mRNA | 19528559 | 19529732 | 19528559 | ID=Msa0911990-mRNA-1;Parent=Msa0911990;Name=Msa0911990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0|1|1|1|2|0|135 |
| chr6_2 | exon | 19529520 | 19529732 | 19529520 | ID=Msa0911990-mRNA-1:exon:4030;Parent=Msa0911990-mRNA-1 |
| chr6_2 | exon | 19528559 | 19528753 | 19528559 | ID=Msa0911990-mRNA-1:exon:4029;Parent=Msa0911990-mRNA-1 |
| chr6_2 | CDS | 19529520 | 19529732 | 19529520 | ID=Msa0911990-mRNA-1:cds;Parent=Msa0911990-mRNA-1 |
| chr6_2 | CDS | 19528559 | 19528753 | 19528559 | ID=Msa0911990-mRNA-1:cds;Parent=Msa0911990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
