Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098730 | sp|Q9LI74|CHUP1_ARATH | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.44e-106 | 352 |
| Msa0098730 | sp|Q9LI74|CHUP1_ARATH | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.45e-25 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098730 | G7IB73 | 98.942 | 756 | 6 | 1 | 1 | 756 | 1 | 754 | 0.0 | 1536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0098730 | 0.800244 | 1.578215e-48 | -8.615850e-47 |
| Msa0048510 | Msa0098730 | 0.807407 | 5.130565e-50 | -8.615850e-47 |
| Msa0053230 | Msa0098730 | 0.945374 | 3.440713e-104 | -8.615850e-47 |
| Msa0094780 | Msa0098730 | 0.821394 | 4.133953e-53 | -8.615850e-47 |
| Msa0098520 | Msa0098730 | 0.902075 | 1.403556e-78 | -8.615850e-47 |
| Msa0098730 | Msa0190110 | 0.837090 | 6.380635e-57 | -8.615850e-47 |
| Msa0098730 | Msa0190570 | 0.802258 | 6.110067e-49 | -8.615850e-47 |
| Msa0098730 | Msa0213030 | 0.820112 | 8.146603e-53 | -8.615850e-47 |
| Msa0098730 | Msa0225860 | 0.827902 | 1.210288e-54 | -8.615850e-47 |
| Msa0098730 | Msa0260510 | 0.823660 | 1.229162e-53 | -8.615850e-47 |
| Msa0098730 | Msa0271880 | 0.842769 | 2.111804e-58 | -8.615850e-47 |
| Msa0098730 | Msa0298470 | 0.822577 | 2.198898e-53 | -8.615850e-47 |
| Msa0098730 | Msa0310850 | 0.832606 | 8.587845e-56 | -8.615850e-47 |
| Msa0098730 | Msa0340500 | 0.803606 | 3.217826e-49 | -8.615850e-47 |
| Msa0098730 | Msa0361910 | 0.805449 | 1.327985e-49 | -8.615850e-47 |
| Msa0098730 | Msa0481890 | 0.814692 | 1.353241e-51 | -8.615850e-47 |
| Msa0098730 | Msa0580370 | 0.813097 | 3.040864e-51 | -8.615850e-47 |
| Msa0098730 | Msa0666700 | 0.816467 | 5.447643e-52 | -8.615850e-47 |
| Msa0098730 | Msa0709440 | 0.816975 | 4.191245e-52 | -8.615850e-47 |
| Msa0098730 | Msa0795870 | 0.810228 | 1.279238e-50 | -8.615850e-47 |
| Msa0098730 | Msa0824450 | 0.815658 | 8.260264e-52 | -8.615850e-47 |
| Msa0098730 | Msa0833650 | 0.812045 | 5.164271e-51 | -8.615850e-47 |
| Msa0098730 | Msa1084530 | 0.813526 | 2.448533e-51 | -8.615850e-47 |
| Msa0098730 | Msa1125820 | 0.813926 | 1.998241e-51 | -8.615850e-47 |
| Msa0098730 | Msa1125990 | 0.818548 | 1.850950e-52 | -8.615850e-47 |
| Msa0098730 | Msa1132840 | 0.817298 | 3.545652e-52 | -8.615850e-47 |
| Msa0098730 | Msa1171290 | 0.815852 | 7.475881e-52 | -8.615850e-47 |
| Msa0098730 | Msa1192570 | 0.832556 | 8.836281e-56 | -8.615850e-47 |
| Msa0098730 | Msa1208950 | 0.818268 | 2.141809e-52 | -8.615850e-47 |
| Msa0098730 | Msa1343180 | 0.804027 | 2.630158e-49 | -8.615850e-47 |
| Msa0098730 | Msa1389690 | 0.870654 | 1.239486e-66 | -8.615850e-47 |
| Msa0098730 | Msa1397400 | 0.821818 | 3.298239e-53 | -8.615850e-47 |
| Msa0098730 | Msa1420950 | 0.819712 | 1.005443e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098730 | MtrunA17_Chr1g0151531 | 98.942 | 756 | 6 | 1 | 1 | 756 | 1 | 754 | 0.0 | 1536 |
| Msa0098730 | MtrunA17_Chr5g0422391 | 62.595 | 262 | 98 | 0 | 487 | 748 | 716 | 977 | 3.25e-111 | 361 |
| Msa0098730 | MtrunA17_Chr5g0422391 | 37.288 | 236 | 85 | 6 | 128 | 300 | 126 | 361 | 9.86e-29 | 123 |
| Msa0098730 | MtrunA17_Chr4g0045981 | 62.313 | 268 | 95 | 3 | 485 | 750 | 345 | 608 | 1.49e-109 | 347 |
| Msa0098730 | MtrunA17_Chr1g0198861 | 62.214 | 262 | 98 | 1 | 487 | 748 | 705 | 965 | 4.41e-109 | 355 |
| Msa0098730 | MtrunA17_Chr1g0198861 | 33.468 | 248 | 90 | 5 | 128 | 300 | 127 | 374 | 1.44e-25 | 113 |
| Msa0098730 | MtrunA17_Chr4g0069431 | 50.545 | 275 | 136 | 0 | 473 | 747 | 280 | 554 | 1.76e-88 | 290 |
| Msa0098730 | MtrunA17_Chr5g0430701 | 49.057 | 265 | 130 | 4 | 487 | 750 | 160 | 420 | 3.56e-82 | 269 |
| Msa0098730 | MtrunA17_Chr2g0307341 | 41.053 | 95 | 51 | 1 | 206 | 300 | 193 | 282 | 4.95e-12 | 69.3 |
| Msa0098730 | MtrunA17_Chr2g0330791 | 32.558 | 172 | 85 | 6 | 146 | 300 | 204 | 361 | 1.92e-11 | 67.4 |
| Msa0098730 | MtrunA17_Chr8g0340991 | 38.144 | 97 | 57 | 1 | 204 | 300 | 278 | 371 | 2.72e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098730 | AT3G25690.3 | 62.264 | 265 | 99 | 1 | 487 | 750 | 577 | 841 | 6.33e-109 | 352 |
| Msa0098730 | AT3G25690.3 | 54.000 | 100 | 46 | 0 | 201 | 300 | 124 | 223 | 2.63e-25 | 112 |
| Msa0098730 | AT3G25690.1 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.46e-107 | 352 |
| Msa0098730 | AT3G25690.1 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.54e-26 | 115 |
| Msa0098730 | AT3G25690.2 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.46e-107 | 352 |
| Msa0098730 | AT3G25690.2 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.54e-26 | 115 |
| Msa0098730 | AT3G25690.6 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.46e-107 | 352 |
| Msa0098730 | AT3G25690.6 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.54e-26 | 115 |
| Msa0098730 | AT3G25690.4 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.46e-107 | 352 |
| Msa0098730 | AT3G25690.4 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.54e-26 | 115 |
| Msa0098730 | AT3G25690.5 | 62.264 | 265 | 99 | 1 | 487 | 750 | 720 | 984 | 1.53e-107 | 352 |
| Msa0098730 | AT3G25690.5 | 34.894 | 235 | 90 | 5 | 129 | 300 | 132 | 366 | 5.46e-26 | 115 |
| Msa0098730 | AT4G18570.1 | 60.806 | 273 | 98 | 4 | 484 | 750 | 350 | 619 | 2.73e-103 | 331 |
| Msa0098730 | AT1G48280.1 | 52.256 | 266 | 127 | 0 | 482 | 747 | 274 | 539 | 1.11e-89 | 293 |
| Msa0098730 | AT4G18570.2 | 59.709 | 206 | 76 | 3 | 484 | 683 | 350 | 554 | 7.09e-73 | 249 |
| Msa0098730 | AT1G07120.1 | 46.097 | 269 | 132 | 4 | 487 | 751 | 128 | 387 | 1.10e-71 | 239 |
| Msa0098730 | AT1G07120.2 | 45.771 | 201 | 100 | 3 | 487 | 683 | 128 | 323 | 2.62e-48 | 174 |
Find 164 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | 1_3:+4747497 | None:intergenic |
| TGTTGTATATTAGATATAAC+TGG | 0.255930 | 1_3:-4743714 | Msa0098730:three_prime_UTR |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | 1_3:+4746847 | None:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | 1_3:-4748788 | Msa0098730:CDS |
| AGCCAAATTGTTAATCAAAA+TGG | 0.263184 | 1_3:+4743561 | None:intergenic |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | 1_3:-4745951 | Msa0098730:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | 1_3:-4745745 | Msa0098730:CDS |
| CAGAACAACAATGTTGGATT+TGG | 0.279832 | 1_3:+4749552 | None:intergenic |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | 1_3:-4745372 | Msa0098730:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | 1_3:+4746850 | None:intergenic |
| AAATGATCACTACTAGTTAT+TGG | 0.298597 | 1_3:+4747207 | None:intergenic |
| ATCATTCAAAACCAAGGTTA+TGG | 0.304659 | 1_3:-4749347 | Msa0098730:CDS |
| TCTATGATTGCACTACATTT+TGG | 0.309549 | 1_3:-4743759 | Msa0098730:three_prime_UTR |
| TGGGGTGCACACATTGTAAA+AGG | 0.310063 | 1_3:-4749327 | Msa0098730:CDS |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | 1_3:-4745291 | Msa0098730:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | 1_3:-4748836 | Msa0098730:CDS |
| AGAACAACAATGTTGGATTT+GGG | 0.330888 | 1_3:+4749553 | None:intergenic |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | 1_3:+4746844 | None:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | 1_3:-4749064 | Msa0098730:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | 1_3:+4747392 | None:intergenic |
| GAAGGTCTTGGAGGTGGATT+AGG | 0.341697 | 1_3:+4746931 | None:intergenic |
| TTTGTTGTTTGAAGCTTTAG+TGG | 0.341705 | 1_3:+4749393 | None:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | 1_3:+4746853 | None:intergenic |
| TTTGAATGATTATTGTTGTT+GGG | 0.345804 | 1_3:+4749360 | None:intergenic |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | 1_3:-4747145 | Msa0098730:CDS |
| TGTAATGCAATCATAGTCTA+TGG | 0.350020 | 1_3:+4743825 | None:intergenic |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | 1_3:+4746058 | None:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | 1_3:-4743957 | Msa0098730:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | 1_3:+4745964 | None:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | 1_3:-4747111 | Msa0098730:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | 1_3:-4746040 | Msa0098730:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | 1_3:-4745754 | Msa0098730:CDS |
| AACTGATTTGTTCACGGAGT+TGG | 0.390136 | 1_3:-4749097 | Msa0098730:CDS |
| TCATTCAAAACCAAGGTTAT+GGG | 0.394475 | 1_3:-4749346 | Msa0098730:CDS |
| GGGTGATTTATCATGTTCTC+AGG | 0.396815 | 1_3:-4749160 | Msa0098730:CDS |
| CTTGAATGAGGTGGAACAAA+AGG | 0.398864 | 1_3:+4749201 | None:intergenic |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | 1_3:+4746077 | None:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | 1_3:+4746841 | None:intergenic |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | 1_3:-4746974 | Msa0098730:CDS |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | 1_3:+4747451 | None:intergenic |
| GAAATAGAACATGAAGGTCT+TGG | 0.415313 | 1_3:+4746919 | None:intergenic |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | 1_3:-4743922 | Msa0098730:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | 1_3:-4748941 | Msa0098730:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | 1_3:-4746747 | Msa0098730:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | 1_3:-4747250 | Msa0098730:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | 1_3:-4746966 | Msa0098730:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | 1_3:+4746694 | None:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | 1_3:+4746823 | None:intergenic |
| GATGTTCGTAGCAGCATGAT+TGG | 0.434922 | 1_3:-4746682 | Msa0098730:CDS |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | 1_3:+4745325 | None:intergenic |
| ATCTTCAACTGATTTGTTCA+CGG | 0.437733 | 1_3:-4749103 | Msa0098730:CDS |
| AAGAGTGAAAAGATCGTTGA+TGG | 0.445561 | 1_3:-4749181 | Msa0098730:CDS |
| TTCATAGGTGCAATCTGGAT+TGG | 0.447662 | 1_3:-4743799 | Msa0098730:three_prime_UTR |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | 1_3:-4747488 | Msa0098730:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | 1_3:+4746838 | None:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | 1_3:-4745768 | Msa0098730:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | 1_3:-4748801 | Msa0098730:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | 1_3:-4745252 | Msa0098730:intron |
| CCACAAGTGTTTCAGTATGA+AGG | 0.460036 | 1_3:-4749481 | Msa0098730:exon |
| GTTATTGATGATGATGTAAG+AGG | 0.460827 | 1_3:+4749582 | None:intergenic |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | 1_3:-4748816 | Msa0098730:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | 1_3:+4745979 | None:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | 1_3:-4748893 | Msa0098730:CDS |
| TTGAATGATTATTGTTGTTG+GGG | 0.477803 | 1_3:+4749361 | None:intergenic |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | 1_3:+4748791 | None:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | 1_3:+4745264 | None:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | 1_3:+4747309 | None:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | 1_3:+4745287 | None:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | 1_3:-4747088 | Msa0098730:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | 1_3:-4746957 | Msa0098730:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | 1_3:-4747010 | Msa0098730:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | 1_3:+4746755 | None:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | 1_3:-4746104 | Msa0098730:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | 1_3:-4746381 | Msa0098730:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | 1_3:-4747453 | Msa0098730:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | 1_3:+4746979 | None:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | 1_3:+4745757 | None:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | 1_3:-4746105 | Msa0098730:intron |
| GTTGTATATTAGATATAACT+GGG | 0.523844 | 1_3:-4743713 | Msa0098730:three_prime_UTR |
| TAGTCTATGGCTTACTGAGA+TGG | 0.527730 | 1_3:+4743838 | None:intergenic |
| GAACATGAAGGTCTTGGAGG+TGG | 0.528351 | 1_3:+4746925 | None:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | 1_3:-4747352 | Msa0098730:CDS |
| TTAGAACAGAACAACAATGT+TGG | 0.530895 | 1_3:+4749546 | None:intergenic |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | 1_3:+4746985 | None:intergenic |
| CCTTCATACTGAAACACTTG+TGG | 0.535452 | 1_3:+4749481 | None:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | 1_3:-4747401 | Msa0098730:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | 1_3:+4747310 | None:intergenic |
| GGCTTACTGAGATGGTAAGC+TGG | 0.541384 | 1_3:+4743846 | None:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | 1_3:-4745993 | Msa0098730:CDS |
| AAATTGTTAATCAAAATGGT+AGG | 0.543400 | 1_3:+4743565 | None:intergenic |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | 1_3:-4748846 | Msa0098730:CDS |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | 1_3:-4747306 | Msa0098730:CDS |
| AGCTAAGTTGAATGCTGAGT+TGG | 0.547558 | 1_3:-4749034 | Msa0098730:CDS |
| AACAACAATGTTGGATTTGG+GGG | 0.549616 | 1_3:+4749555 | None:intergenic |
| TTGCTAGAAATAGAACATGA+AGG | 0.550243 | 1_3:+4746913 | None:intergenic |
| TTGAATGAGGTGGAACAAAA+GGG | 0.552966 | 1_3:+4749202 | None:intergenic |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | 1_3:-4746311 | Msa0098730:CDS |
| ATAGAACATGAAGGTCTTGG+AGG | 0.559160 | 1_3:+4746922 | None:intergenic |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | 1_3:+4746832 | None:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | 1_3:-4747427 | Msa0098730:CDS |
| CATTCAAAACCAAGGTTATG+GGG | 0.561756 | 1_3:-4749345 | Msa0098730:CDS |
| TCCCTGTAGAATGGAACGTA+CGG | 0.561761 | 1_3:-4745839 | Msa0098730:intron |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | 1_3:-4743954 | Msa0098730:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | 1_3:-4743953 | Msa0098730:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | 1_3:-4746733 | Msa0098730:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | 1_3:+4745965 | None:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | 1_3:-4747016 | Msa0098730:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | 1_3:-4746965 | Msa0098730:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | 1_3:-4745816 | Msa0098730:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | 1_3:-4747142 | Msa0098730:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | 1_3:-4748914 | Msa0098730:CDS |
| AATTGTTAATCAAAATGGTA+GGG | 0.577822 | 1_3:+4743566 | None:intergenic |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | 1_3:-4749007 | Msa0098730:CDS |
| TACAACAACAATAACAACCT+CGG | 0.581296 | 1_3:-4749253 | Msa0098730:CDS |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | 1_3:-4747421 | Msa0098730:CDS |
| GAACAACAATGTTGGATTTG+GGG | 0.586269 | 1_3:+4749554 | None:intergenic |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | 1_3:+4747359 | None:intergenic |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | 1_3:-4746746 | Msa0098730:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | 1_3:+4748930 | None:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | 1_3:+4746835 | None:intergenic |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | 1_3:+4747485 | None:intergenic |
| CTGGTTAGTAACAACATCCG+AGG | 0.598131 | 1_3:+4749236 | None:intergenic |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | 1_3:-4746785 | Msa0098730:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | 1_3:-4745791 | Msa0098730:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | 1_3:-4746730 | Msa0098730:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | 1_3:+4746829 | None:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | 1_3:-4748752 | Msa0098730:intron |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | 1_3:-4746809 | Msa0098730:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | 1_3:-4747424 | Msa0098730:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | 1_3:-4747400 | Msa0098730:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | 1_3:-4745982 | Msa0098730:CDS |
| TATATTAGATATAACTGGGG+GGG | 0.607492 | 1_3:-4743709 | Msa0098730:three_prime_UTR |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | 1_3:-4747502 | Msa0098730:CDS |
| ATGTGTGCACCCCATAACCT+TGG | 0.609951 | 1_3:+4749336 | None:intergenic |
| ATGCTGAGTTGGTTGAGTGT+AGG | 0.613954 | 1_3:-4749023 | Msa0098730:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | 1_3:+4745982 | None:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | 1_3:-4747141 | Msa0098730:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | 1_3:-4746328 | Msa0098730:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | 1_3:-4746342 | Msa0098730:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | 1_3:-4745740 | Msa0098730:intron |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | 1_3:-4748902 | Msa0098730:CDS |
| TTGTATATTAGATATAACTG+GGG | 0.619257 | 1_3:-4743712 | Msa0098730:three_prime_UTR |
| TGTATATTAGATATAACTGG+GGG | 0.627219 | 1_3:-4743711 | Msa0098730:three_prime_UTR |
| GAAGATTGTCTCCTATGTGT+TGG | 0.627862 | 1_3:+4749120 | None:intergenic |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | 1_3:-4745281 | Msa0098730:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | 1_3:+4745956 | None:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | 1_3:-4748889 | Msa0098730:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | 1_3:+4746826 | None:intergenic |
| CTATGTGTTGGAAAAGCATG+TGG | 0.644463 | 1_3:+4749132 | None:intergenic |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | 1_3:+4746775 | None:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | 1_3:-4748919 | Msa0098730:CDS |
| ACAATAATCATTCAAAACCA+AGG | 0.650093 | 1_3:-4749353 | Msa0098730:CDS |
| AGAGTGAAAAGATCGTTGAT+GGG | 0.651953 | 1_3:-4749180 | Msa0098730:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | 1_3:-4748927 | Msa0098730:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | 1_3:-4746788 | Msa0098730:CDS |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | 1_3:-4745300 | Msa0098730:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | 1_3:+4745803 | None:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | 1_3:-4746369 | Msa0098730:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | 1_3:-4746410 | Msa0098730:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | 1_3:-4747273 | Msa0098730:CDS |
| CAGCAAGTAAATGTGACGAA+CGG | 0.689590 | 1_3:+4746647 | None:intergenic |
| GTATATTAGATATAACTGGG+GGG | 0.704956 | 1_3:-4743710 | Msa0098730:three_prime_UTR |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | 1_3:-4745815 | Msa0098730:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | 1_3:-4747094 | Msa0098730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAAATTATTTTTGTATA+TGG | - | chr1_3:4744657-4744676 | Msa0098730:intron | 10.0% |
| !! | TTCAAAAAAAATATGAAAAA+AGG | - | chr1_3:4745400-4745419 | Msa0098730:intron | 10.0% |
| !! | TCAAAAAAAATATGAAAAAA+GGG | - | chr1_3:4745401-4745420 | Msa0098730:intron | 10.0% |
| !! | AAAATATATAAATAAAGATG+GGG | + | chr1_3:4748365-4748384 | None:intergenic | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | - | chr1_3:4748891-4748910 | Msa0098730:CDS | 10.0% |
| !! | ATTCACCAATATAAATATAA+TGG | + | chr1_3:4746667-4746686 | None:intergenic | 15.0% |
| !! | ATTATATTTATATTGGTGAA+TGG | - | chr1_3:4746666-4746685 | Msa0098730:CDS | 15.0% |
| !! | AGAAATAGATATTAATATTC+AGG | + | chr1_3:4746734-4746753 | None:intergenic | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | - | chr1_3:4747061-4747080 | Msa0098730:CDS | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | - | chr1_3:4747160-4747179 | Msa0098730:CDS | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | + | chr1_3:4747581-4747600 | None:intergenic | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | - | chr1_3:4747582-4747601 | Msa0098730:intron | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | - | chr1_3:4747649-4747668 | Msa0098730:intron | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | - | chr1_3:4747791-4747810 | Msa0098730:intron | 15.0% |
| !! | AAATCCAAATTATTATACAA+GGG | - | chr1_3:4748222-4748241 | Msa0098730:intron | 15.0% |
| !! | CAAGAAAATAAAAAGAATTA+AGG | + | chr1_3:4748594-4748613 | None:intergenic | 15.0% |
| !! | ATGAAGAAAAATATATTATG+TGG | - | chr1_3:4749576-4749595 | Msa0098730:five_prime_UTR | 15.0% |
| !!! | ATCAGAAAATTTTGAAACTT+TGG | + | chr1_3:4743755-4743774 | None:intergenic | 20.0% |
| !!! | TTTGAATGATTATTGTTGTT+GGG | + | chr1_3:4743820-4743839 | None:intergenic | 20.0% |
| !!! | TTTTGAATGATTATTGTTGT+TGG | + | chr1_3:4743821-4743840 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGTTTTTTTGT+CGG | + | chr1_3:4743907-4743926 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | - | chr1_3:4744486-4744505 | Msa0098730:intron | 20.0% |
| !! | GCTTATTTAAATTTACCTAT+TGG | + | chr1_3:4744976-4744995 | None:intergenic | 20.0% |
| !!! | TTGTAGGAGTATTTTTTTTA+AGG | + | chr1_3:4745357-4745376 | None:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | - | chr1_3:4746016-4746035 | Msa0098730:CDS | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | - | chr1_3:4746161-4746180 | Msa0098730:intron | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | + | chr1_3:4746570-4746589 | None:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | + | chr1_3:4746580-4746599 | None:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | + | chr1_3:4746595-4746614 | None:intergenic | 20.0% |
| !! | TGAAGCCATTATATTTATAT+TGG | - | chr1_3:4746659-4746678 | Msa0098730:CDS | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | + | chr1_3:4746695-4746714 | None:intergenic | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | - | chr1_3:4746748-4746767 | Msa0098730:CDS | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | - | chr1_3:4747064-4747083 | Msa0098730:CDS | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | + | chr1_3:4747565-4747584 | None:intergenic | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | - | chr1_3:4747761-4747780 | Msa0098730:intron | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | - | chr1_3:4748221-4748240 | Msa0098730:intron | 20.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | + | chr1_3:4748229-4748248 | None:intergenic | 20.0% |
| !!! | TTTTTTTATATACTGGAAAG+TGG | - | chr1_3:4748381-4748400 | Msa0098730:intron | 20.0% |
| !! | ATAATCTAAATATAGTCACA+AGG | + | chr1_3:4748503-4748522 | None:intergenic | 20.0% |
| !!! | AATTTTGAATGATCGATTTT+TGG | - | chr1_3:4748831-4748850 | Msa0098730:CDS | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | - | chr1_3:4748894-4748913 | Msa0098730:CDS | 20.0% |
| !! | TGTTGTATATTAGATATAAC+TGG | - | chr1_3:4749463-4749482 | Msa0098730:CDS | 20.0% |
| !! | GTTGTATATTAGATATAACT+GGG | - | chr1_3:4749464-4749483 | Msa0098730:CDS | 20.0% |
| !! | TTGTATATTAGATATAACTG+GGG | - | chr1_3:4749465-4749484 | Msa0098730:CDS | 20.0% |
| !! | AATTGTTAATCAAAATGGTA+GGG | + | chr1_3:4749614-4749633 | None:intergenic | 20.0% |
| !! | AAATTGTTAATCAAAATGGT+AGG | + | chr1_3:4749615-4749634 | None:intergenic | 20.0% |
| !!! | TACCATTTTGATTAACAATT+TGG | - | chr1_3:4749614-4749633 | Msa0098730:five_prime_UTR | 20.0% |
| !! | TTGAATGATTATTGTTGTTG+GGG | + | chr1_3:4743819-4743838 | None:intergenic | 25.0% |
| ! | ACAATAATCATTCAAAACCA+AGG | - | chr1_3:4743824-4743843 | Msa0098730:three_prime_UTR | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | - | chr1_3:4744219-4744238 | Msa0098730:intron | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | - | chr1_3:4744462-4744481 | Msa0098730:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | - | chr1_3:4744463-4744482 | Msa0098730:intron | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | - | chr1_3:4744485-4744504 | Msa0098730:intron | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | - | chr1_3:4744517-4744536 | Msa0098730:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | - | chr1_3:4744518-4744537 | Msa0098730:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+AGG | - | chr1_3:4744542-4744561 | Msa0098730:intron | 25.0% |
| ! | TTGTTTGGATAAACAACTTA+GGG | - | chr1_3:4744543-4744562 | Msa0098730:intron | 25.0% |
| ! | TATAAGCTATAAGCTATATC+AGG | - | chr1_3:4744693-4744712 | Msa0098730:intron | 25.0% |
| ! | ATAAGCTATAAGCTATATCA+GGG | - | chr1_3:4744694-4744713 | Msa0098730:intron | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | + | chr1_3:4744911-4744930 | None:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | - | chr1_3:4745078-4745097 | Msa0098730:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | - | chr1_3:4745108-4745127 | Msa0098730:intron | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | - | chr1_3:4745109-4745128 | Msa0098730:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | - | chr1_3:4745438-4745457 | Msa0098730:intron | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | + | chr1_3:4745531-4745550 | None:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | + | chr1_3:4745639-4745658 | None:intergenic | 25.0% |
| ! | AAATGATCACTACTAGTTAT+TGG | + | chr1_3:4745973-4745992 | None:intergenic | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | - | chr1_3:4746032-4746051 | Msa0098730:CDS | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | - | chr1_3:4746167-4746186 | Msa0098730:intron | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | - | chr1_3:4746796-4746815 | Msa0098730:CDS | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | + | chr1_3:4746972-4746991 | None:intergenic | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | + | chr1_3:4746978-4746997 | None:intergenic | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | - | chr1_3:4747226-4747245 | Msa0098730:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | - | chr1_3:4747432-4747451 | Msa0098730:CDS | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | + | chr1_3:4747624-4747643 | None:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | - | chr1_3:4747735-4747754 | Msa0098730:intron | 25.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | - | chr1_3:4747805-4747824 | Msa0098730:intron | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | - | chr1_3:4747825-4747844 | Msa0098730:intron | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | - | chr1_3:4747826-4747845 | Msa0098730:intron | 25.0% |
| ! | GATACTGAAGTATATTATGT+GGG | + | chr1_3:4747956-4747975 | None:intergenic | 25.0% |
| ! | AGATACTGAAGTATATTATG+TGG | + | chr1_3:4747957-4747976 | None:intergenic | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | + | chr1_3:4748129-4748148 | None:intergenic | 25.0% |
| ! | ATATATAAATAAAGATGGGG+TGG | + | chr1_3:4748362-4748381 | None:intergenic | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | + | chr1_3:4748966-4748985 | None:intergenic | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | + | chr1_3:4748983-4749002 | None:intergenic | 25.0% |
| !! | GATTGCATTACATTTTTCAT+AGG | - | chr1_3:4749363-4749382 | Msa0098730:CDS | 25.0% |
| !!! | GATTGGATTAGTTTTGTATT+TGG | - | chr1_3:4749395-4749414 | Msa0098730:CDS | 25.0% |
| ! | TGTATATTAGATATAACTGG+GGG | - | chr1_3:4749466-4749485 | Msa0098730:CDS | 25.0% |
| ! | AGCCAAATTGTTAATCAAAA+TGG | + | chr1_3:4749619-4749638 | None:intergenic | 25.0% |
| !! | GTTATTGATGATGATGTAAG+AGG | + | chr1_3:4743598-4743617 | None:intergenic | 30.0% |
| AGAACAACAATGTTGGATTT+GGG | + | chr1_3:4743627-4743646 | None:intergenic | 30.0% | |
| TTAGAACAGAACAACAATGT+TGG | + | chr1_3:4743634-4743653 | None:intergenic | 30.0% | |
| !! | CAGTGTTTTTGAGAAGTTTA+AGG | + | chr1_3:4743674-4743693 | None:intergenic | 30.0% |
| !!! | CTTTGGTCTTATTTTCTGAT+GGG | + | chr1_3:4743738-4743757 | None:intergenic | 30.0% |
| !!! | ACTTTGGTCTTATTTTCTGA+TGG | + | chr1_3:4743739-4743758 | None:intergenic | 30.0% |
| !! | TTTGTTGTTTGAAGCTTTAG+TGG | + | chr1_3:4743787-4743806 | None:intergenic | 30.0% |
| ATCATTCAAAACCAAGGTTA+TGG | - | chr1_3:4743830-4743849 | Msa0098730:three_prime_UTR | 30.0% | |
| TCATTCAAAACCAAGGTTAT+GGG | - | chr1_3:4743831-4743850 | Msa0098730:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTGTCGGAAGTTGTT+TGG | + | chr1_3:4743896-4743915 | None:intergenic | 30.0% |
| TACAACAACAATAACAACCT+CGG | - | chr1_3:4743924-4743943 | Msa0098730:CDS | 30.0% | |
| !! | ATCTTCAACTGATTTGTTCA+CGG | - | chr1_3:4744074-4744093 | Msa0098730:intron | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | - | chr1_3:4744442-4744461 | Msa0098730:intron | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | - | chr1_3:4744493-4744512 | Msa0098730:intron | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1_3:4744569-4744588 | None:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | + | chr1_3:4744946-4744965 | None:intergenic | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | + | chr1_3:4745075-4745094 | None:intergenic | 30.0% |
| TATGCAAATTAGAATAGAGG+AGG | - | chr1_3:4745081-4745100 | Msa0098730:intron | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | + | chr1_3:4745373-4745392 | None:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | - | chr1_3:4745372-4745391 | Msa0098730:CDS | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | + | chr1_3:4745821-4745840 | None:intergenic | 30.0% | |
| AAAGAATACATGCTCAACAT+TGG | - | chr1_3:4745825-4745844 | Msa0098730:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | - | chr1_3:4745927-4745946 | Msa0098730:intron | 30.0% | |
| AGAAGAAGACATTCAATTAG+TGG | - | chr1_3:4746066-4746085 | Msa0098730:CDS | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | + | chr1_3:4746201-4746220 | None:intergenic | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | - | chr1_3:4746203-4746222 | Msa0098730:intron | 30.0% | |
| TTGCTAGAAATAGAACATGA+AGG | + | chr1_3:4746267-4746286 | None:intergenic | 30.0% | |
| ACCAAAATATTGCATTCACA+TGG | - | chr1_3:4746628-4746647 | Msa0098730:intron | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | + | chr1_3:4746718-4746737 | None:intergenic | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | + | chr1_3:4746895-4746914 | None:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | + | chr1_3:4746940-4746959 | None:intergenic | 30.0% | |
| ! | TTATTTCTTAGGTGGATGAA+AGG | - | chr1_3:4747072-4747091 | Msa0098730:CDS | 30.0% |
| TATTTCTTAGGTGGATGAAA+GGG | - | chr1_3:4747073-4747092 | Msa0098730:CDS | 30.0% | |
| !! | TTCTTTAGAGCAATATCACA+AGG | + | chr1_3:4747224-4747243 | None:intergenic | 30.0% |
| AGTTTCAAATTCCTGTAGAA+TGG | - | chr1_3:4747409-4747428 | Msa0098730:CDS | 30.0% | |
| !! | TGATAATGGAATTATTGGCA+AGG | - | chr1_3:4747437-4747456 | Msa0098730:CDS | 30.0% |
| ATTGGCAAGGTATACTATAA+TGG | - | chr1_3:4747450-4747469 | Msa0098730:CDS | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | - | chr1_3:4747659-4747678 | Msa0098730:intron | 30.0% | |
| !!! | TTTTTGAAGTTCCTAGAAGA+CGG | + | chr1_3:4747703-4747722 | None:intergenic | 30.0% |
| ! | TGACTTTGTTTGAACTTCAA+TGG | + | chr1_3:4747855-4747874 | None:intergenic | 30.0% |
| ! | GAAGAAACATCGATTAACAA+TGG | + | chr1_3:4748006-4748025 | None:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | + | chr1_3:4748121-4748140 | None:intergenic | 30.0% |
| !!! | ATTGAGTTGATTCTTTTCAC+TGG | - | chr1_3:4748304-4748323 | Msa0098730:intron | 30.0% |
| ATAGAAAATAGCATCAGCTA+GGG | + | chr1_3:4748421-4748440 | None:intergenic | 30.0% | |
| AATAGAAAATAGCATCAGCT+AGG | + | chr1_3:4748422-4748441 | None:intergenic | 30.0% | |
| GGAGGAAATACAAAGAATTA+AGG | + | chr1_3:4748533-4748552 | None:intergenic | 30.0% | |
| ! | TCTTGCAAATTCTTTCTAGT+AGG | - | chr1_3:4748706-4748725 | Msa0098730:intron | 30.0% |
| ! | CTTGCAAATTCTTTCTAGTA+GGG | - | chr1_3:4748707-4748726 | Msa0098730:intron | 30.0% |
| AGCTTATGATGAGTCAAAAA+AGG | - | chr1_3:4748788-4748807 | Msa0098730:CDS | 30.0% | |
| TTTGGTTAGAAAAGAATCAG+TGG | + | chr1_3:4748948-4748967 | None:intergenic | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | + | chr1_3:4749027-4749046 | None:intergenic | 30.0% | |
| !!! | AGTCGCAGTTTAGTTTTTTT+TGG | - | chr1_3:4749078-4749097 | Msa0098730:CDS | 30.0% |
| !!! | CAGTTTAGTTTTTTTTGGTG+CGG | - | chr1_3:4749083-4749102 | Msa0098730:CDS | 30.0% |
| ! | GATTCAGGAATTTTATGTTG+TGG | + | chr1_3:4749156-4749175 | None:intergenic | 30.0% |
| TTAGTAACAAAGACAGATTC+AGG | + | chr1_3:4749171-4749190 | None:intergenic | 30.0% | |
| ACATCTTACTGCATATTTAG+TGG | + | chr1_3:4749194-4749213 | None:intergenic | 30.0% | |
| ! | TATTTGTTAATGCAGTTTGC+AGG | - | chr1_3:4749220-4749239 | Msa0098730:CDS | 30.0% |
| TGTAATGCAATCATAGTCTA+TGG | + | chr1_3:4749355-4749374 | None:intergenic | 30.0% | |
| ! | TCTATGATTGCACTACATTT+TGG | - | chr1_3:4749418-4749437 | Msa0098730:CDS | 30.0% |
| GTATATTAGATATAACTGGG+GGG | - | chr1_3:4749467-4749486 | Msa0098730:CDS | 30.0% | |
| TATATTAGATATAACTGGGG+GGG | - | chr1_3:4749468-4749487 | Msa0098730:CDS | 30.0% | |
| !!! | GTAAGAGGTTTTTTCTGTGT+GGG | + | chr1_3:4743583-4743602 | None:intergenic | 35.0% |
| !!! | TGTAAGAGGTTTTTTCTGTG+TGG | + | chr1_3:4743584-4743603 | None:intergenic | 35.0% |
| AACAACAATGTTGGATTTGG+GGG | + | chr1_3:4743625-4743644 | None:intergenic | 35.0% | |
| GAACAACAATGTTGGATTTG+GGG | + | chr1_3:4743626-4743645 | None:intergenic | 35.0% | |
| CAGAACAACAATGTTGGATT+TGG | + | chr1_3:4743628-4743647 | None:intergenic | 35.0% | |
| CATTCAAAACCAAGGTTATG+GGG | - | chr1_3:4743832-4743851 | Msa0098730:three_prime_UTR | 35.0% | |
| ! | CAAAAGGGTTAACGTTTTTC+TGG | + | chr1_3:4743963-4743982 | None:intergenic | 35.0% |
| TTGAATGAGGTGGAACAAAA+GGG | + | chr1_3:4743978-4743997 | None:intergenic | 35.0% | |
| ! | GATCTTTTCACTCTTGAATG+AGG | + | chr1_3:4743991-4744010 | None:intergenic | 35.0% |
| AAGAGTGAAAAGATCGTTGA+TGG | - | chr1_3:4743996-4744015 | Msa0098730:intron | 35.0% | |
| AGAGTGAAAAGATCGTTGAT+GGG | - | chr1_3:4743997-4744016 | Msa0098730:intron | 35.0% | |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | - | chr1_3:4744113-4744132 | Msa0098730:intron | 35.0% |
| AGAAAAGGAACCTTACTTGT+AGG | - | chr1_3:4744376-4744395 | Msa0098730:intron | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | + | chr1_3:4744389-4744408 | None:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | - | chr1_3:4744389-4744408 | Msa0098730:intron | 35.0% | |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | - | chr1_3:4744425-4744444 | Msa0098730:intron | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | - | chr1_3:4744528-4744547 | Msa0098730:intron | 35.0% |
| TATTTGCAGCTTATAGCACA+AGG | - | chr1_3:4744585-4744604 | Msa0098730:intron | 35.0% | |
| ATTTGCAGCTTATAGCACAA+GGG | - | chr1_3:4744586-4744605 | Msa0098730:intron | 35.0% | |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | + | chr1_3:4744935-4744954 | None:intergenic | 35.0% |
| TCCGAAACTAATAATCTCAC+AGG | - | chr1_3:4744942-4744961 | Msa0098730:intron | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | - | chr1_3:4745054-4745073 | Msa0098730:intron | 35.0% | |
| ! | GCTAGAAGTTGATCAAAACT+GGG | + | chr1_3:4745295-4745314 | None:intergenic | 35.0% |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | + | chr1_3:4745296-4745315 | None:intergenic | 35.0% |
| ACAAACGAGCAGATTAAATG+AGG | - | chr1_3:4745750-4745769 | Msa0098730:CDS | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | - | chr1_3:4745904-4745923 | Msa0098730:intron | 35.0% | |
| !!! | CTAGTTATTGGCCACTTTTT+CGG | + | chr1_3:4745961-4745980 | None:intergenic | 35.0% |
| TGTTGAACAAATAACGGCAT+TGG | + | chr1_3:4746195-4746214 | None:intergenic | 35.0% | |
| GAAATAGAACATGAAGGTCT+TGG | + | chr1_3:4746261-4746280 | None:intergenic | 35.0% | |
| ! | TTTTGCATCTAGAGGTAACA+CGG | - | chr1_3:4746362-4746381 | Msa0098730:CDS | 35.0% |
| AATCTCTCTTCATGAGTGAA+TGG | + | chr1_3:4746425-4746444 | None:intergenic | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | - | chr1_3:4746430-4746449 | Msa0098730:intron | 35.0% | |
| ! | CATGAAGAGAGATTCTAGAA+GGG | - | chr1_3:4746431-4746450 | Msa0098730:intron | 35.0% |
| ! | GCCATGTGAATGCAATATTT+TGG | + | chr1_3:4746632-4746651 | None:intergenic | 35.0% |
| AAGGCAGATATTGAAACACA+AGG | - | chr1_3:4746767-4746786 | Msa0098730:CDS | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | - | chr1_3:4746835-4746854 | Msa0098730:CDS | 35.0% | |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | - | chr1_3:4747096-4747115 | Msa0098730:CDS | 35.0% |
| ACATTAAGAGAAGCAGCATT+TGG | - | chr1_3:4747137-4747156 | Msa0098730:CDS | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | - | chr1_3:4747386-4747405 | Msa0098730:CDS | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | + | chr1_3:4747423-4747442 | None:intergenic | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | - | chr1_3:4747423-4747442 | Msa0098730:CDS | 35.0% | |
| !! | TGGCATTGATGAATATGTGA+AGG | - | chr1_3:4747470-4747489 | Msa0098730:CDS | 35.0% |
| ATTTGACAAAGATCCTGCAA+TGG | - | chr1_3:4747877-4747896 | Msa0098730:intron | 35.0% | |
| !! | AGATCCTGCAATGGATTATA+TGG | - | chr1_3:4747886-4747905 | Msa0098730:intron | 35.0% |
| AGAACCATATAATCCATTGC+AGG | + | chr1_3:4747893-4747912 | None:intergenic | 35.0% | |
| ! | ATGGATTATATGGTTCTCCA+AGG | - | chr1_3:4747896-4747915 | Msa0098730:intron | 35.0% |
| ATTTGCTTTCAGAATCCATC+AGG | - | chr1_3:4747925-4747944 | Msa0098730:intron | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | + | chr1_3:4747943-4747962 | None:intergenic | 35.0% | |
| !! | CTTTGTCCATGCTTTTAAGT+TGG | - | chr1_3:4747975-4747994 | Msa0098730:intron | 35.0% |
| ! | GAAACATCGATTAACAATGG+AGG | + | chr1_3:4748003-4748022 | None:intergenic | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | - | chr1_3:4748143-4748162 | Msa0098730:intron | 35.0% |
| TAATAATGTAGATCTGCCCT+TGG | + | chr1_3:4748162-4748181 | None:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | - | chr1_3:4748163-4748182 | Msa0098730:intron | 35.0% | |
| ACCTACGATTGTTCATGAAT+CGG | - | chr1_3:4748196-4748215 | Msa0098730:intron | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | - | chr1_3:4748264-4748283 | Msa0098730:intron | 35.0% | |
| TATAAATAAAGATGGGGTGG+CGG | + | chr1_3:4748359-4748378 | None:intergenic | 35.0% | |
| ATAAACCAATATAGCGCAGA+GGG | + | chr1_3:4748455-4748474 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTTTTTGGTGCGGT+TGG | - | chr1_3:4749087-4749106 | Msa0098730:CDS | 35.0% |
| ! | AGGAATTTTATGTTGTGGCT+AGG | + | chr1_3:4749151-4749170 | None:intergenic | 35.0% |
| AGAAACAATGCATGCATTTG+AGG | - | chr1_3:4749255-4749274 | Msa0098730:CDS | 35.0% | |
| ! | CATTTTTCATAGGTGCAATC+TGG | - | chr1_3:4749373-4749392 | Msa0098730:CDS | 35.0% |
| CCTTCATACTGAAACACTTG+TGG | + | chr1_3:4743699-4743718 | None:intergenic | 40.0% | |
| CCACAAGTGTTTCAGTATGA+AGG | - | chr1_3:4743696-4743715 | Msa0098730:three_prime_UTR | 40.0% | |
| CTTGAATGAGGTGGAACAAA+AGG | + | chr1_3:4743979-4743998 | None:intergenic | 40.0% | |
| ! | CTTTTCACTCTTGAATGAGG+TGG | + | chr1_3:4743988-4744007 | None:intergenic | 40.0% |
| GGGTGATTTATCATGTTCTC+AGG | - | chr1_3:4744017-4744036 | Msa0098730:intron | 40.0% | |
| ! | CTATGTGTTGGAAAAGCATG+TGG | + | chr1_3:4744048-4744067 | None:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACACAT+AGG | - | chr1_3:4744046-4744065 | Msa0098730:intron | 40.0% |
| GAAGATTGTCTCCTATGTGT+TGG | + | chr1_3:4744060-4744079 | None:intergenic | 40.0% | |
| !! | AACTGATTTGTTCACGGAGT+TGG | - | chr1_3:4744080-4744099 | Msa0098730:intron | 40.0% |
| ! | AGCTAAGTTGAATGCTGAGT+TGG | - | chr1_3:4744143-4744162 | Msa0098730:intron | 40.0% |
| AAATGGCTTATCCGAGCAAT+TGG | - | chr1_3:4744236-4744255 | Msa0098730:intron | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | + | chr1_3:4744250-4744269 | None:intergenic | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | - | chr1_3:4744250-4744269 | Msa0098730:intron | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | - | chr1_3:4744284-4744303 | Msa0098730:intron | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | - | chr1_3:4744288-4744307 | Msa0098730:intron | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | - | chr1_3:4744331-4744350 | Msa0098730:intron | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | - | chr1_3:4744341-4744360 | Msa0098730:intron | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | - | chr1_3:4744361-4744380 | Msa0098730:intron | 40.0% | |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | - | chr1_3:4744498-4744517 | Msa0098730:intron | 40.0% |
| TAAACAACTTAGGGCCTGTT+TGG | - | chr1_3:4744552-4744571 | Msa0098730:intron | 40.0% | |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | + | chr1_3:4744751-4744770 | None:intergenic | 40.0% |
| ATAAGCGTGCACTTGATCAA+GGG | + | chr1_3:4744766-4744785 | None:intergenic | 40.0% | |
| TATAAGCGTGCACTTGATCA+AGG | + | chr1_3:4744767-4744786 | None:intergenic | 40.0% | |
| TTTCGGAGAGCTTATGGAAA+AGG | + | chr1_3:4744929-4744948 | None:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | - | chr1_3:4744958-4744977 | Msa0098730:intron | 40.0% | |
| AGCTAATCCAAACAATTCCG+AGG | - | chr1_3:4744993-4745012 | Msa0098730:intron | 40.0% | |
| ! | TCCACACTGCCATTTAACTT+AGG | - | chr1_3:4745519-4745538 | Msa0098730:intron | 40.0% |
| ACCTAAGTTAAATGGCAGTG+TGG | + | chr1_3:4745523-4745542 | None:intergenic | 40.0% | |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | - | chr1_3:4745675-4745694 | Msa0098730:intron | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | + | chr1_3:4745683-4745702 | None:intergenic | 40.0% |
| AACCTTCTACTTGTTTGCTC+AGG | + | chr1_3:4745729-4745748 | None:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | - | chr1_3:4745753-4745772 | Msa0098730:CDS | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | + | chr1_3:4745788-4745807 | None:intergenic | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | + | chr1_3:4745870-4745889 | None:intergenic | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | - | chr1_3:4745947-4745966 | Msa0098730:CDS | 40.0% | |
| ! | TTGGATTGAATCGATTTCGG+AGG | - | chr1_3:4746035-4746054 | Msa0098730:CDS | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | - | chr1_3:4746036-4746055 | Msa0098730:CDS | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | - | chr1_3:4746083-4746102 | Msa0098730:CDS | 40.0% |
| TTCTAATAGCTCAGAGGAAG+AGG | - | chr1_3:4746089-4746108 | Msa0098730:CDS | 40.0% | |
| !! | AACAATGTGCTTTGGAGAAG+AGG | - | chr1_3:4746211-4746230 | Msa0098730:intron | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | - | chr1_3:4746212-4746231 | Msa0098730:intron | 40.0% |
| ATAGAACATGAAGGTCTTGG+AGG | + | chr1_3:4746258-4746277 | None:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | + | chr1_3:4746354-4746373 | None:intergenic | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | + | chr1_3:4746357-4746376 | None:intergenic | 40.0% | |
| ! | CCTATGAGTTTTGCATCTAG+AGG | - | chr1_3:4746354-4746373 | Msa0098730:CDS | 40.0% |
| TCTAGAAGGGATTCTTCAAG+TGG | - | chr1_3:4746444-4746463 | Msa0098730:intron | 40.0% | |
| CAGCAAGTAAATGTGACGAA+CGG | + | chr1_3:4746533-4746552 | None:intergenic | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | - | chr1_3:4746849-4746868 | Msa0098730:CDS | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | + | chr1_3:4747103-4747122 | None:intergenic | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | + | chr1_3:4747122-4747141 | None:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | - | chr1_3:4747184-4747203 | Msa0098730:CDS | 40.0% | |
| GTTTGTGTTTCCCTGTAGAA+TGG | - | chr1_3:4747329-4747348 | Msa0098730:CDS | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | - | chr1_3:4747514-4747533 | Msa0098730:intron | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | + | chr1_3:4747916-4747935 | None:intergenic | 40.0% | |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | + | chr1_3:4748106-4748125 | None:intergenic | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | - | chr1_3:4748142-4748161 | Msa0098730:intron | 40.0% |
| TTCATGAACAATCGTAGGTG+AGG | + | chr1_3:4748195-4748214 | None:intergenic | 40.0% | |
| ! | ACCGATTCATGAACAATCGT+AGG | + | chr1_3:4748200-4748219 | None:intergenic | 40.0% |
| ACTGAACCATGAACAATCCT+AGG | + | chr1_3:4748258-4748277 | None:intergenic | 40.0% | |
| !! | GAGTTGATTCTTTTCACTGG+CGG | - | chr1_3:4748307-4748326 | Msa0098730:intron | 40.0% |
| TGGAAAGTGGATGCTGAAAA+AGG | - | chr1_3:4748394-4748413 | Msa0098730:intron | 40.0% | |
| GATAAACCAATATAGCGCAG+AGG | + | chr1_3:4748456-4748475 | None:intergenic | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | + | chr1_3:4748923-4748942 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | + | chr1_3:4748924-4748943 | None:intergenic | 40.0% | |
| GGTTAGAAAAGAATCAGTGG+CGG | + | chr1_3:4748945-4748964 | None:intergenic | 40.0% | |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | - | chr1_3:4749095-4749114 | Msa0098730:CDS | 40.0% |
| TTGTTAATGCAGTTTGCAGG+AGG | - | chr1_3:4749223-4749242 | Msa0098730:CDS | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | - | chr1_3:4749224-4749243 | Msa0098730:CDS | 40.0% | |
| TAGTCTATGGCTTACTGAGA+TGG | + | chr1_3:4749342-4749361 | None:intergenic | 40.0% | |
| TTCATAGGTGCAATCTGGAT+TGG | - | chr1_3:4749378-4749397 | Msa0098730:CDS | 40.0% | |
| !! | ACATTTTGGTCGCAAGAGAT+TGG | - | chr1_3:4749432-4749451 | Msa0098730:CDS | 40.0% |
| TGGGGTGCACACATTGTAAA+AGG | - | chr1_3:4743850-4743869 | Msa0098730:three_prime_UTR | 45.0% | |
| CTGGTTAGTAACAACATCCG+AGG | + | chr1_3:4743944-4743963 | None:intergenic | 45.0% | |
| !! | ATGCTGAGTTGGTTGAGTGT+AGG | - | chr1_3:4744154-4744173 | Msa0098730:intron | 45.0% |
| GTGTAGGAAGAATCAGAGTG+AGG | - | chr1_3:4744170-4744189 | Msa0098730:intron | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | - | chr1_3:4744263-4744282 | Msa0098730:intron | 45.0% | |
| !! | CTGTGGATTGGAAAGACAAG+AGG | - | chr1_3:4744275-4744294 | Msa0098730:intron | 45.0% |
| ! | GGGCATGTTTGGAATTGGAT+TGG | + | chr1_3:4744746-4744765 | None:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | + | chr1_3:4744757-4744776 | None:intergenic | 45.0% |
| ! | AAGCTTTATCCCACTGAGTG+GGG | + | chr1_3:4745028-4745047 | None:intergenic | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | + | chr1_3:4745029-4745048 | None:intergenic | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | - | chr1_3:4745301-4745320 | Msa0098730:CDS | 45.0% |
| GACCTGAGCAAACAAGTAGA+AGG | - | chr1_3:4745724-4745743 | Msa0098730:intron | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | - | chr1_3:4745756-4745775 | Msa0098730:CDS | 45.0% | |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | - | chr1_3:4745776-4745795 | Msa0098730:CDS | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | - | chr1_3:4745777-4745796 | Msa0098730:CDS | 45.0% |
| CTGCTACTCACAACAGATTG+AGG | + | chr1_3:4745871-4745890 | None:intergenic | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | - | chr1_3:4745871-4745890 | Msa0098730:intron | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | + | chr1_3:4746351-4746370 | None:intergenic | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | - | chr1_3:4746447-4746466 | Msa0098730:intron | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | + | chr1_3:4746486-4746505 | None:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | - | chr1_3:4746495-4746514 | Msa0098730:intron | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | - | chr1_3:4746808-4746827 | Msa0098730:CDS | 45.0% | |
| AAGTGGCTCGATGATGAACT+TGG | - | chr1_3:4746866-4746885 | Msa0098730:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | + | chr1_3:4747215-4747234 | None:intergenic | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | + | chr1_3:4747216-4747235 | None:intergenic | 45.0% | |
| TCCCTGTAGAATGGAACGTA+CGG | - | chr1_3:4747338-4747357 | Msa0098730:CDS | 45.0% | |
| ACCGTACGTTCCATTCTACA+GGG | + | chr1_3:4747342-4747361 | None:intergenic | 45.0% | |
| AACCGTACGTTCCATTCTAC+AGG | + | chr1_3:4747343-4747362 | None:intergenic | 45.0% | |
| GTATCCTATGACCGTCTTCT+AGG | - | chr1_3:4747689-4747708 | Msa0098730:intron | 45.0% | |
| AGTTCCTAGAAGACGGTCAT+AGG | + | chr1_3:4747696-4747715 | None:intergenic | 45.0% | |
| ! | GAGGCACCAACTTAAAAGCA+TGG | + | chr1_3:4747984-4748003 | None:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | + | chr1_3:4748101-4748120 | None:intergenic | 45.0% |
| GCCCTTGGTCAATACTCAAT+AGG | + | chr1_3:4748147-4748166 | None:intergenic | 45.0% | |
| ! | ATTCTTTTCACTGGCGGAAC+TGG | - | chr1_3:4748313-4748332 | Msa0098730:intron | 45.0% |
| ! | TTCTTTTCACTGGCGGAACT+GGG | - | chr1_3:4748314-4748333 | Msa0098730:intron | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | + | chr1_3:4748920-4748939 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | - | chr1_3:4748917-4748936 | Msa0098730:CDS | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | + | chr1_3:4748925-4748944 | None:intergenic | 45.0% | |
| !!! | ATATAACTGGGGGGGCATTT+TGG | - | chr1_3:4749476-4749495 | Msa0098730:exon | 45.0% |
| !!! | TATAACTGGGGGGGCATTTT+GGG | - | chr1_3:4749477-4749496 | Msa0098730:exon | 45.0% |
| !! | AAAAATATATAAATAAAGAT+GGG | + | chr1_3:4748366-4748385 | None:intergenic | 5.0% |
| !! | AAAAAATATATAAATAAAGA+TGG | + | chr1_3:4748367-4748386 | None:intergenic | 5.0% |
| !!! | TTATATATTTTTTTATATAC+TGG | - | chr1_3:4748374-4748393 | Msa0098730:intron | 5.0% |
| !!! | TTAACAATTTTTTTTTTAAA+TGG | + | chr1_3:4749003-4749022 | None:intergenic | 5.0% |
| ATGTGTGCACCCCATAACCT+TGG | + | chr1_3:4743844-4743863 | None:intergenic | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | - | chr1_3:4744258-4744277 | Msa0098730:intron | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | + | chr1_3:4745003-4745022 | None:intergenic | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | + | chr1_3:4745024-4745043 | None:intergenic | 50.0% | |
| ! | CCAAGCTTTATCCCACTGAG+TGG | + | chr1_3:4745030-4745049 | None:intergenic | 50.0% |
| CCACTCAGTGGGATAAAGCT+TGG | - | chr1_3:4745027-4745046 | Msa0098730:intron | 50.0% | |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | - | chr1_3:4746220-4746239 | Msa0098730:intron | 50.0% |
| ! | GAAGGTCTTGGAGGTGGATT+AGG | + | chr1_3:4746249-4746268 | None:intergenic | 50.0% |
| GAACATGAAGGTCTTGGAGG+TGG | + | chr1_3:4746255-4746274 | None:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | + | chr1_3:4746345-4746364 | None:intergenic | 50.0% |
| GCAAAACTCATAGGAGGTGG+TGG | + | chr1_3:4746348-4746367 | None:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | - | chr1_3:4746368-4746387 | Msa0098730:CDS | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | - | chr1_3:4746389-4746408 | Msa0098730:CDS | 50.0% | |
| AAAACGAGCACCACAAGTGG+TGG | - | chr1_3:4746392-4746411 | Msa0098730:CDS | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | + | chr1_3:4746405-4746424 | None:intergenic | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | + | chr1_3:4747201-4747220 | None:intergenic | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | - | chr1_3:4747361-4747380 | Msa0098730:CDS | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | - | chr1_3:4747362-4747381 | Msa0098730:CDS | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | + | chr1_3:4747377-4747396 | None:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | - | chr1_3:4748079-4748098 | Msa0098730:intron | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | + | chr1_3:4748088-4748107 | None:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | + | chr1_3:4748253-4748272 | None:intergenic | 50.0% | |
| ! | TCTTTTCACTGGCGGAACTG+GGG | - | chr1_3:4748315-4748334 | Msa0098730:intron | 50.0% |
| ! | AAATAAAGATGGGGTGGCGG+TGG | + | chr1_3:4748356-4748375 | None:intergenic | 50.0% |
| TGCTTCCCTCTGCGCTATAT+TGG | - | chr1_3:4748447-4748466 | Msa0098730:intron | 50.0% | |
| GGCTTACTGAGATGGTAAGC+TGG | + | chr1_3:4749334-4749353 | None:intergenic | 50.0% | |
| AAGCCTGAGCAGTGATGCCT+CGG | + | chr1_3:4745695-4745714 | None:intergenic | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | + | chr1_3:4747198-4747217 | None:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | - | chr1_3:4747195-4747214 | Msa0098730:CDS | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | - | chr1_3:4748238-4748257 | Msa0098730:intron | 55.0% |
| GCCTCGCCTAGGATTGTTCA+TGG | - | chr1_3:4748249-4748268 | Msa0098730:intron | 55.0% | |
| ! | CTTTTCACTGGCGGAACTGG+GGG | - | chr1_3:4748316-4748335 | Msa0098730:intron | 55.0% |
| ! | TTTTCACTGGCGGAACTGGG+GGG | - | chr1_3:4748317-4748336 | Msa0098730:intron | 55.0% |
| TGTAGCCGACCCCACTCAGT+GGG | - | chr1_3:4745016-4745035 | Msa0098730:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | - | chr1_3:4745689-4745708 | Msa0098730:intron | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | + | chr1_3:4745013-4745032 | None:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | - | chr1_3:4745015-4745034 | Msa0098730:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | + | chr1_3:4746339-4746358 | None:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | + | chr1_3:4746342-4746361 | None:intergenic | 65.0% |
| TCACTGGCGGAACTGGGGGG+TGG | - | chr1_3:4748320-4748339 | Msa0098730:intron | 70.0% | |
| GCGGAACTGGGGGGTGGCAA+GGG | - | chr1_3:4748326-4748345 | Msa0098730:intron | 70.0% | |
| CGGAACTGGGGGGTGGCAAG+GGG | - | chr1_3:4748327-4748346 | Msa0098730:intron | 70.0% | |
| GGAACTGGGGGGTGGCAAGG+GGG | - | chr1_3:4748328-4748347 | Msa0098730:intron | 70.0% | |
| GGCGGAGGTGGAGGTGGAGG+AGG | + | chr1_3:4746327-4746346 | None:intergenic | 75.0% | |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | + | chr1_3:4746330-4746349 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | + | chr1_3:4746333-4746352 | None:intergenic | 75.0% |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | + | chr1_3:4746336-4746355 | None:intergenic | 75.0% |
| GGCGGAACTGGGGGGTGGCA+AGG | - | chr1_3:4748325-4748344 | Msa0098730:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4743559 | 4749640 | 4743559 | ID=Msa0098730;Name=Msa0098730 |
| chr1_3 | mRNA | 4743559 | 4749640 | 4743559 | ID=Msa0098730-mRNA-1;Parent=Msa0098730;Name=Msa0098730-mRNA-1;_AED=0.04;_eAED=0.04;_QI=153|1|1|1|1|1|7|325|756 |
| chr1_3 | exon | 4743559 | 4743964 | 4743559 | ID=Msa0098730-mRNA-1:exon:1654;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4745253 | 4745396 | 4745253 | ID=Msa0098730-mRNA-1:exon:1653;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4745741 | 4745852 | 4745741 | ID=Msa0098730-mRNA-1:exon:1652;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4745935 | 4746116 | 4745935 | ID=Msa0098730-mRNA-1:exon:1651;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4746304 | 4746435 | 4746304 | ID=Msa0098730-mRNA-1:exon:1650;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4746648 | 4747532 | 4746648 | ID=Msa0098730-mRNA-1:exon:1649;Parent=Msa0098730-mRNA-1 |
| chr1_3 | exon | 4748753 | 4749640 | 4748753 | ID=Msa0098730-mRNA-1:exon:1648;Parent=Msa0098730-mRNA-1 |
| chr1_3 | five_prime_UTR | 4749488 | 4749640 | 4749488 | ID=Msa0098730-mRNA-1:five_prime_utr;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4748753 | 4749487 | 4748753 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4746648 | 4747532 | 4746648 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4746304 | 4746435 | 4746304 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4745935 | 4746116 | 4745935 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4745741 | 4745852 | 4745741 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4745253 | 4745396 | 4745253 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | CDS | 4743884 | 4743964 | 4743884 | ID=Msa0098730-mRNA-1:cds;Parent=Msa0098730-mRNA-1 |
| chr1_3 | three_prime_UTR | 4743559 | 4743883 | 4743559 | ID=Msa0098730-mRNA-1:three_prime_utr;Parent=Msa0098730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
