Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053230 | XP_003589006.1 | 98.810 | 756 | 7 | 1 | 1 | 756 | 1 | 754 | 0.0 | 1534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053230 | sp|Q9LI74|CHUP1_ARATH | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.41e-106 | 352 |
| Msa0053230 | sp|Q9LI74|CHUP1_ARATH | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.55e-25 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053230 | G7IB73 | 98.810 | 756 | 7 | 1 | 1 | 756 | 1 | 754 | 0.0 | 1534 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048510 | Msa0053230 | 0.812734 | 3.653163e-51 | -8.615850e-47 |
| Msa0053230 | Msa0094780 | 0.821593 | 3.717832e-53 | -8.615850e-47 |
| Msa0053230 | Msa0098520 | 0.940619 | 1.710778e-100 | -8.615850e-47 |
| Msa0053230 | Msa0098730 | 0.945374 | 3.440713e-104 | -8.615850e-47 |
| Msa0053230 | Msa0190110 | 0.828513 | 8.623580e-55 | -8.615850e-47 |
| Msa0053230 | Msa0200050 | 0.811217 | 7.817022e-51 | -8.615850e-47 |
| Msa0053230 | Msa0213030 | 0.816392 | 5.662488e-52 | -8.615850e-47 |
| Msa0053230 | Msa0225860 | 0.830710 | 2.519725e-55 | -8.615850e-47 |
| Msa0053230 | Msa0260510 | 0.816160 | 6.380600e-52 | -8.615850e-47 |
| Msa0053230 | Msa0271880 | 0.827816 | 1.269327e-54 | -8.615850e-47 |
| Msa0053230 | Msa0298470 | 0.804564 | 2.033243e-49 | -8.615850e-47 |
| Msa0053230 | Msa0310850 | 0.813919 | 2.005801e-51 | -8.615850e-47 |
| Msa0053230 | Msa0340500 | 0.810742 | 9.906050e-51 | -8.615850e-47 |
| Msa0053230 | Msa0481890 | 0.816657 | 4.939939e-52 | -8.615850e-47 |
| Msa0053230 | Msa0531960 | 0.805620 | 1.222409e-49 | -8.615850e-47 |
| Msa0053230 | Msa0580370 | 0.800425 | 1.450161e-48 | -8.615850e-47 |
| Msa0053230 | Msa0588920 | 0.814088 | 1.841107e-51 | -8.615850e-47 |
| Msa0053230 | Msa0666700 | 0.826268 | 2.978560e-54 | -8.615850e-47 |
| Msa0053230 | Msa0709440 | 0.819402 | 1.183456e-52 | -8.615850e-47 |
| Msa0053230 | Msa0795870 | 0.800540 | 1.373756e-48 | -8.615850e-47 |
| Msa0053230 | Msa0824450 | 0.817424 | 3.321976e-52 | -8.615850e-47 |
| Msa0053230 | Msa0833650 | 0.801805 | 7.571893e-49 | -8.615850e-47 |
| Msa0053230 | Msa0842070 | 0.812755 | 3.614515e-51 | -8.615850e-47 |
| Msa0053230 | Msa0863620 | 0.808547 | 2.935557e-50 | -8.615850e-47 |
| Msa0053230 | Msa0997920 | 0.809675 | 1.682486e-50 | -8.615850e-47 |
| Msa0053230 | Msa1084530 | 0.817349 | 3.453315e-52 | -8.615850e-47 |
| Msa0053230 | Msa1125820 | 0.820349 | 7.190309e-53 | -8.615850e-47 |
| Msa0053230 | Msa1125990 | 0.822443 | 2.362188e-53 | -8.615850e-47 |
| Msa0053230 | Msa1132840 | 0.807336 | 5.311753e-50 | -8.615850e-47 |
| Msa0053230 | Msa1171290 | 0.819531 | 1.106243e-52 | -8.615850e-47 |
| Msa0053230 | Msa1192570 | 0.840983 | 6.259151e-58 | -8.615850e-47 |
| Msa0053230 | Msa1208950 | 0.822961 | 1.789416e-53 | -8.615850e-47 |
| Msa0053230 | Msa1215870 | 0.812171 | 4.848373e-51 | -8.615850e-47 |
| Msa0053230 | Msa1343180 | 0.804772 | 1.840305e-49 | -8.615850e-47 |
| Msa0053230 | Msa1380120 | 0.811481 | 6.853618e-51 | -8.615850e-47 |
| Msa0053230 | Msa1389690 | 0.896197 | 4.646406e-76 | -8.615850e-47 |
| Msa0053230 | Msa1397400 | 0.810159 | 1.324192e-50 | -8.615850e-47 |
| Msa0053230 | Msa1420950 | 0.805535 | 1.274004e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053230 | MtrunA17_Chr1g0151531 | 98.810 | 756 | 7 | 1 | 1 | 756 | 1 | 754 | 0.0 | 1534 |
| Msa0053230 | MtrunA17_Chr5g0422391 | 62.595 | 262 | 98 | 0 | 487 | 748 | 716 | 977 | 2.69e-111 | 361 |
| Msa0053230 | MtrunA17_Chr5g0422391 | 37.288 | 236 | 85 | 6 | 128 | 300 | 126 | 361 | 9.20e-29 | 123 |
| Msa0053230 | MtrunA17_Chr4g0045981 | 62.313 | 268 | 95 | 3 | 485 | 750 | 345 | 608 | 1.50e-109 | 347 |
| Msa0053230 | MtrunA17_Chr1g0198861 | 62.214 | 262 | 98 | 1 | 487 | 748 | 705 | 965 | 4.60e-109 | 355 |
| Msa0053230 | MtrunA17_Chr1g0198861 | 33.468 | 248 | 90 | 5 | 128 | 300 | 127 | 374 | 1.48e-25 | 113 |
| Msa0053230 | MtrunA17_Chr4g0069431 | 50.545 | 275 | 136 | 0 | 473 | 747 | 280 | 554 | 1.68e-88 | 290 |
| Msa0053230 | MtrunA17_Chr5g0430701 | 49.057 | 265 | 130 | 4 | 487 | 750 | 160 | 420 | 3.20e-82 | 269 |
| Msa0053230 | MtrunA17_Chr2g0307341 | 41.053 | 95 | 51 | 1 | 206 | 300 | 193 | 282 | 4.95e-12 | 69.3 |
| Msa0053230 | MtrunA17_Chr2g0330791 | 32.558 | 172 | 85 | 6 | 146 | 300 | 204 | 361 | 1.95e-11 | 67.4 |
| Msa0053230 | MtrunA17_Chr8g0340991 | 38.144 | 97 | 57 | 1 | 204 | 300 | 278 | 371 | 2.67e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0053230 | AT3G25690.3 | 62.264 | 265 | 99 | 1 | 487 | 750 | 577 | 841 | 5.95e-109 | 352 |
| Msa0053230 | AT3G25690.3 | 54.000 | 100 | 46 | 0 | 201 | 300 | 124 | 223 | 2.65e-25 | 112 |
| Msa0053230 | AT3G25690.1 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.43e-107 | 352 |
| Msa0053230 | AT3G25690.1 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.64e-26 | 115 |
| Msa0053230 | AT3G25690.2 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.43e-107 | 352 |
| Msa0053230 | AT3G25690.2 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.64e-26 | 115 |
| Msa0053230 | AT3G25690.6 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.43e-107 | 352 |
| Msa0053230 | AT3G25690.6 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.64e-26 | 115 |
| Msa0053230 | AT3G25690.4 | 62.264 | 265 | 99 | 1 | 487 | 750 | 718 | 982 | 1.43e-107 | 352 |
| Msa0053230 | AT3G25690.4 | 34.894 | 235 | 90 | 5 | 129 | 300 | 130 | 364 | 5.64e-26 | 115 |
| Msa0053230 | AT3G25690.5 | 62.264 | 265 | 99 | 1 | 487 | 750 | 720 | 984 | 1.66e-107 | 352 |
| Msa0053230 | AT3G25690.5 | 34.894 | 235 | 90 | 5 | 129 | 300 | 132 | 366 | 5.60e-26 | 115 |
| Msa0053230 | AT4G18570.1 | 60.806 | 273 | 98 | 4 | 484 | 750 | 350 | 619 | 2.54e-103 | 331 |
| Msa0053230 | AT1G48280.1 | 52.256 | 266 | 127 | 0 | 482 | 747 | 274 | 539 | 1.11e-89 | 293 |
| Msa0053230 | AT4G18570.2 | 59.709 | 206 | 76 | 3 | 484 | 683 | 350 | 554 | 7.16e-73 | 249 |
| Msa0053230 | AT1G07120.1 | 46.097 | 269 | 132 | 4 | 487 | 751 | 128 | 387 | 1.10e-71 | 239 |
| Msa0053230 | AT1G07120.2 | 45.771 | 201 | 100 | 3 | 487 | 683 | 128 | 323 | 2.84e-48 | 174 |
Find 163 sgRNAs with CRISPR-Local
Find 397 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | 1_2:-7659504 | None:intergenic |
| TGTTGTATATTAGATATAAC+TGG | 0.255930 | 1_2:+7663696 | Msa0053230:three_prime_UTR |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | 1_2:-7660154 | None:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | 1_2:+7658130 | Msa0053230:CDS |
| AGCCAAATTGTTAATCAAAA+TGG | 0.263184 | 1_2:-7663849 | None:intergenic |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | 1_2:+7661050 | Msa0053230:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | 1_2:+7661256 | Msa0053230:CDS |
| CAGAACAACAATGTTGGATT+TGG | 0.279832 | 1_2:-7657366 | None:intergenic |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | 1_2:+7661629 | Msa0053230:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | 1_2:-7660151 | None:intergenic |
| ATCATTCAAAACCAAGGTTA+TGG | 0.304659 | 1_2:+7657571 | Msa0053230:CDS |
| TCTATGATTGCACTACATTT+TGG | 0.309549 | 1_2:+7663651 | Msa0053230:three_prime_UTR |
| TGGGGTGCACACATTGTAAA+AGG | 0.310063 | 1_2:+7657591 | Msa0053230:CDS |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | 1_2:+7661710 | Msa0053230:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | 1_2:+7658082 | Msa0053230:CDS |
| AGAACAACAATGTTGGATTT+GGG | 0.330888 | 1_2:-7657365 | None:intergenic |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | 1_2:-7660157 | None:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | 1_2:+7657854 | Msa0053230:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | 1_2:-7659609 | None:intergenic |
| GAAGGTCTTGGAGGTGGATT+AGG | 0.341697 | 1_2:-7660070 | None:intergenic |
| TTTGTTGTTTGAAGCTTTAG+TGG | 0.341705 | 1_2:-7657525 | None:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | 1_2:-7660148 | None:intergenic |
| TTTGAATGATTATTGTTGTT+GGG | 0.345804 | 1_2:-7657558 | None:intergenic |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | 1_2:+7659856 | Msa0053230:CDS |
| TGTAATGCAATCATAGTCTA+TGG | 0.350020 | 1_2:-7663585 | None:intergenic |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | 1_2:-7660943 | None:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | 1_2:+7663453 | Msa0053230:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | 1_2:-7661037 | None:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | 1_2:+7659890 | Msa0053230:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | 1_2:+7660961 | Msa0053230:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | 1_2:+7661247 | Msa0053230:CDS |
| AACTGATTTGTTCACGGAGT+TGG | 0.390136 | 1_2:+7657821 | Msa0053230:CDS |
| TCATTCAAAACCAAGGTTAT+GGG | 0.394475 | 1_2:+7657572 | Msa0053230:CDS |
| GGGTGATTTATCATGTTCTC+AGG | 0.396815 | 1_2:+7657758 | Msa0053230:CDS |
| CTTGAATGAGGTGGAACAAA+AGG | 0.398864 | 1_2:-7657717 | None:intergenic |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | 1_2:-7660924 | None:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | 1_2:-7660160 | None:intergenic |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | 1_2:+7660027 | Msa0053230:CDS |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | 1_2:-7659550 | None:intergenic |
| GAAATAGAACATGAAGGTCT+TGG | 0.415313 | 1_2:-7660082 | None:intergenic |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | 1_2:+7663488 | Msa0053230:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | 1_2:+7657977 | Msa0053230:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | 1_2:+7660254 | Msa0053230:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | 1_2:+7659751 | Msa0053230:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | 1_2:+7660035 | Msa0053230:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | 1_2:-7660307 | None:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | 1_2:-7660178 | None:intergenic |
| GATGTTCGTAGCAGCATGAT+TGG | 0.434922 | 1_2:+7660319 | Msa0053230:CDS |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | 1_2:-7661676 | None:intergenic |
| ATCTTCAACTGATTTGTTCA+CGG | 0.437733 | 1_2:+7657815 | Msa0053230:CDS |
| AAGAGTGAAAAGATCGTTGA+TGG | 0.445561 | 1_2:+7657737 | Msa0053230:CDS |
| TTCATAGGTGCAATCTGGAT+TGG | 0.447662 | 1_2:+7663611 | Msa0053230:three_prime_UTR |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | 1_2:+7659513 | Msa0053230:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | 1_2:-7660163 | None:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | 1_2:+7661233 | Msa0053230:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | 1_2:+7658117 | Msa0053230:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | 1_2:+7661749 | Msa0053230:CDS |
| CCACAAGTGTTTCAGTATGA+AGG | 0.460036 | 1_2:+7657437 | Msa0053230:exon |
| GTTATTGATGGTGATGTAAG+AGG | 0.460947 | 1_2:-7657336 | Msa0053220:intron |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | 1_2:+7658102 | Msa0053230:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | 1_2:-7661022 | None:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | 1_2:+7658025 | Msa0053230:CDS |
| TTGAATGATTATTGTTGTTG+GGG | 0.477803 | 1_2:-7657557 | None:intergenic |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | 1_2:-7658127 | None:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | 1_2:-7661737 | None:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | 1_2:-7659692 | None:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | 1_2:-7661714 | None:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | 1_2:+7659913 | Msa0053230:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | 1_2:+7660044 | Msa0053230:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | 1_2:+7659991 | Msa0053230:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | 1_2:-7660246 | None:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | 1_2:+7660897 | Msa0053230:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | 1_2:+7660620 | Msa0053230:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | 1_2:+7659548 | Msa0053230:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | 1_2:-7660022 | None:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | 1_2:-7661244 | None:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | 1_2:+7660896 | Msa0053230:intron |
| GTTGTATATTAGATATAACT+GGG | 0.523844 | 1_2:+7663697 | Msa0053230:three_prime_UTR |
| TAGTCTATGGCTTACTGAGA+TGG | 0.527730 | 1_2:-7663572 | None:intergenic |
| GAACATGAAGGTCTTGGAGG+TGG | 0.528351 | 1_2:-7660076 | None:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | 1_2:+7659649 | Msa0053230:CDS |
| TTAGAACAGAACAACAATGT+TGG | 0.530895 | 1_2:-7657372 | None:intergenic |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | 1_2:-7660016 | None:intergenic |
| CCTTCATACTGAAACACTTG+TGG | 0.535452 | 1_2:-7657437 | None:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | 1_2:+7659600 | Msa0053230:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | 1_2:-7659691 | None:intergenic |
| GGCTTACTGAGATGGTAAGC+TGG | 0.541384 | 1_2:-7663564 | None:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | 1_2:+7661008 | Msa0053230:CDS |
| AAATTGTTAATCAAAATGGT+AGG | 0.543400 | 1_2:-7663845 | None:intergenic |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | 1_2:+7658072 | Msa0053230:CDS |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | 1_2:+7659695 | Msa0053230:CDS |
| AGCTAAGTTGAATGCTGAGT+TGG | 0.547558 | 1_2:+7657884 | Msa0053230:CDS |
| AACAACAATGTTGGATTTGG+GGG | 0.549616 | 1_2:-7657363 | None:intergenic |
| TTGCTAGAAATAGAACATGA+AGG | 0.550243 | 1_2:-7660088 | None:intergenic |
| TTGAATGAGGTGGAACAAAA+GGG | 0.552966 | 1_2:-7657716 | None:intergenic |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | 1_2:+7660690 | Msa0053230:CDS |
| ATAGAACATGAAGGTCTTGG+AGG | 0.559160 | 1_2:-7660079 | None:intergenic |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | 1_2:-7660169 | None:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | 1_2:+7659574 | Msa0053230:CDS |
| CATTCAAAACCAAGGTTATG+GGG | 0.561756 | 1_2:+7657573 | Msa0053230:CDS |
| TCCCTGTAGAATGGAACGTA+CGG | 0.561761 | 1_2:+7661162 | Msa0053230:intron |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | 1_2:+7663456 | Msa0053230:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | 1_2:+7663457 | Msa0053230:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | 1_2:+7660268 | Msa0053230:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | 1_2:-7661036 | None:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | 1_2:+7659985 | Msa0053230:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | 1_2:+7660036 | Msa0053230:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | 1_2:+7661185 | Msa0053230:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | 1_2:+7659859 | Msa0053230:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | 1_2:+7658004 | Msa0053230:CDS |
| AATTGTTAATCAAAATGGTA+GGG | 0.577822 | 1_2:-7663844 | None:intergenic |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | 1_2:+7657911 | Msa0053230:CDS |
| TACAACAACAATAACAACCT+CGG | 0.581296 | 1_2:+7657665 | Msa0053230:CDS |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | 1_2:+7659580 | Msa0053230:CDS |
| GAACAACAATGTTGGATTTG+GGG | 0.586269 | 1_2:-7657364 | None:intergenic |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | 1_2:-7659642 | None:intergenic |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | 1_2:+7660255 | Msa0053230:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | 1_2:-7657988 | None:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | 1_2:-7660166 | None:intergenic |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | 1_2:-7659516 | None:intergenic |
| CTGGTTAGTAACAACATCCG+AGG | 0.598131 | 1_2:-7657682 | None:intergenic |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | 1_2:+7660216 | Msa0053230:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | 1_2:+7661210 | Msa0053230:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | 1_2:+7660271 | Msa0053230:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | 1_2:-7660172 | None:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | 1_2:+7658166 | Msa0053230:CDS |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | 1_2:+7660192 | Msa0053230:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | 1_2:+7659577 | Msa0053230:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | 1_2:+7659601 | Msa0053230:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | 1_2:+7661019 | Msa0053230:CDS |
| TATATTAGATATAACTGGGG+GGG | 0.607492 | 1_2:+7663701 | Msa0053230:three_prime_UTR |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | 1_2:+7659499 | Msa0053230:CDS |
| ATGTGTGCACCCCATAACCT+TGG | 0.609951 | 1_2:-7657582 | None:intergenic |
| ATGCTGAGTTGGTTGAGTGT+AGG | 0.613954 | 1_2:+7657895 | Msa0053230:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | 1_2:-7661019 | None:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | 1_2:+7659860 | Msa0053230:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | 1_2:+7660673 | Msa0053230:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | 1_2:+7660659 | Msa0053230:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | 1_2:+7661261 | Msa0053230:CDS |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | 1_2:+7658016 | Msa0053230:CDS |
| TTGTATATTAGATATAACTG+GGG | 0.619257 | 1_2:+7663698 | Msa0053230:three_prime_UTR |
| TGTATATTAGATATAACTGG+GGG | 0.627219 | 1_2:+7663699 | Msa0053230:three_prime_UTR |
| GAAGATTGTCTCCTATGTGT+TGG | 0.627862 | 1_2:-7657798 | None:intergenic |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | 1_2:+7661720 | Msa0053230:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | 1_2:-7661045 | None:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | 1_2:+7658029 | Msa0053230:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | 1_2:-7660175 | None:intergenic |
| CTATGTGTTGGAAAAGCATG+TGG | 0.644463 | 1_2:-7657786 | None:intergenic |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | 1_2:-7660226 | None:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | 1_2:+7657999 | Msa0053230:CDS |
| ACAATAATCATTCAAAACCA+AGG | 0.650093 | 1_2:+7657565 | Msa0053230:CDS |
| AGAGTGAAAAGATCGTTGAT+GGG | 0.651953 | 1_2:+7657738 | Msa0053230:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | 1_2:+7657991 | Msa0053230:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | 1_2:+7660213 | Msa0053230:CDS |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | 1_2:+7661701 | Msa0053230:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | 1_2:-7661198 | None:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | 1_2:+7660632 | Msa0053230:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | 1_2:+7660591 | Msa0053230:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | 1_2:+7659728 | Msa0053230:CDS |
| CAGCAAGTAAATGTGACGAA+CGG | 0.689590 | 1_2:-7660354 | None:intergenic |
| GTATATTAGATATAACTGGG+GGG | 0.704956 | 1_2:+7663700 | Msa0053230:three_prime_UTR |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | 1_2:+7661186 | Msa0053230:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | 1_2:+7659907 | Msa0053230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAAATTATTTTTGTATA+TGG | + | chr1_2:7658398-7658417 | Msa0053230:intron | 10.0% |
| !! | TTCAAAAAAAATATGAAAAA+AGG | + | chr1_2:7659224-7659243 | Msa0053230:intron | 10.0% |
| !! | TCAAAAAAAATATGAAAAAA+GGG | + | chr1_2:7659225-7659244 | Msa0053230:intron | 10.0% |
| !! | AAAATATATAAATAAAGATG+GGG | - | chr1_2:7662189-7662208 | None:intergenic | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | + | chr1_2:7662715-7662734 | Msa0053230:intron | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | + | chr1_2:7662715-7662734 | Msa0053230:intron | 10.0% |
| !! | TTATGAAAATAAGCTTAAAA+AGG | + | chr1_2:7658461-7658480 | Msa0053230:intron | 15.0% |
| !! | AGAAATAGATATTAATATTC+AGG | - | chr1_2:7660558-7660577 | None:intergenic | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | + | chr1_2:7660885-7660904 | Msa0053230:intron | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | + | chr1_2:7660984-7661003 | Msa0053230:CDS | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | - | chr1_2:7661405-7661424 | None:intergenic | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | + | chr1_2:7661406-7661425 | Msa0053230:intron | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | + | chr1_2:7661473-7661492 | Msa0053230:intron | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | + | chr1_2:7661615-7661634 | Msa0053230:intron | 15.0% |
| !! | AAATCCAAATTATTATACAA+GGG | + | chr1_2:7662046-7662065 | Msa0053230:intron | 15.0% |
| !! | CAAGAAAATAAAAAGAATTA+AGG | - | chr1_2:7662418-7662437 | None:intergenic | 15.0% |
| !! | ATGAAGAAAAATATATTATG+TGG | + | chr1_2:7663809-7663828 | Msa0053230:three_prime_UTR | 15.0% |
| !!! | ATCAGAAAATTTTGAAACTT+TGG | - | chr1_2:7657496-7657515 | None:intergenic | 20.0% |
| !!! | TTTGAATGATTATTGTTGTT+GGG | - | chr1_2:7657561-7657580 | None:intergenic | 20.0% |
| !!! | TTTTGAATGATTATTGTTGT+TGG | - | chr1_2:7657562-7657581 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGTTTTTTTGT+CGG | - | chr1_2:7657648-7657667 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | + | chr1_2:7658227-7658246 | Msa0053230:intron | 20.0% |
| !! | GCTTATTTAAATTTACCTAT+TGG | - | chr1_2:7658800-7658819 | None:intergenic | 20.0% |
| !!! | TTGTAGGAGTATTTTTTTTA+AGG | - | chr1_2:7659181-7659200 | None:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | + | chr1_2:7659840-7659859 | Msa0053230:CDS | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | + | chr1_2:7659985-7660004 | Msa0053230:CDS | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | - | chr1_2:7660394-7660413 | None:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | - | chr1_2:7660404-7660423 | None:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | - | chr1_2:7660419-7660438 | None:intergenic | 20.0% |
| !! | ATTCACCAATATAAATAGAA+TGG | - | chr1_2:7660491-7660510 | None:intergenic | 20.0% |
| !! | ATTCTATTTATATTGGTGAA+TGG | + | chr1_2:7660490-7660509 | Msa0053230:intron | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | - | chr1_2:7660519-7660538 | None:intergenic | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | + | chr1_2:7660572-7660591 | Msa0053230:intron | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | + | chr1_2:7660888-7660907 | Msa0053230:intron | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | - | chr1_2:7661389-7661408 | None:intergenic | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | + | chr1_2:7661585-7661604 | Msa0053230:intron | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | + | chr1_2:7662045-7662064 | Msa0053230:intron | 20.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | - | chr1_2:7662053-7662072 | None:intergenic | 20.0% |
| !!! | TTTTTTTATATACTGGAAAG+TGG | + | chr1_2:7662205-7662224 | Msa0053230:intron | 20.0% |
| !! | ATAATCTAAATATAGTCACA+AGG | - | chr1_2:7662327-7662346 | None:intergenic | 20.0% |
| !!! | AATTTTGAATGATCGATTTT+TGG | + | chr1_2:7662655-7662674 | Msa0053230:intron | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | + | chr1_2:7662718-7662737 | Msa0053230:intron | 20.0% |
| !!! | AATTTTGAATGATCGATTTT+TGG | + | chr1_2:7662655-7662674 | Msa0053230:intron | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | + | chr1_2:7662718-7662737 | Msa0053230:intron | 20.0% |
| !! | TGTTGTATATTAGATATAAC+TGG | + | chr1_2:7663696-7663715 | Msa0053230:three_prime_UTR | 20.0% |
| !! | GTTGTATATTAGATATAACT+GGG | + | chr1_2:7663697-7663716 | Msa0053230:three_prime_UTR | 20.0% |
| !! | TTGTATATTAGATATAACTG+GGG | + | chr1_2:7663698-7663717 | Msa0053230:three_prime_UTR | 20.0% |
| !! | AATTGTTAATCAAAATGGTA+GGG | - | chr1_2:7663847-7663866 | None:intergenic | 20.0% |
| !! | AAATTGTTAATCAAAATGGT+AGG | - | chr1_2:7663848-7663867 | None:intergenic | 20.0% |
| !!! | TACCATTTTGATTAACAATT+TGG | + | chr1_2:7663847-7663866 | Msa0053230:three_prime_UTR | 20.0% |
| !! | TTGAATGATTATTGTTGTTG+GGG | - | chr1_2:7657560-7657579 | None:intergenic | 25.0% |
| ! | ACAATAATCATTCAAAACCA+AGG | + | chr1_2:7657565-7657584 | Msa0053230:CDS | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | + | chr1_2:7657960-7657979 | Msa0053230:CDS | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | + | chr1_2:7658203-7658222 | Msa0053230:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | + | chr1_2:7658204-7658223 | Msa0053230:intron | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | + | chr1_2:7658226-7658245 | Msa0053230:intron | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | + | chr1_2:7658258-7658277 | Msa0053230:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | + | chr1_2:7658259-7658278 | Msa0053230:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+AGG | + | chr1_2:7658283-7658302 | Msa0053230:intron | 25.0% |
| ! | TTGTTTGGATAAACAACTTA+GGG | + | chr1_2:7658284-7658303 | Msa0053230:intron | 25.0% |
| ! | TATAAGCTATAAGCTATATC+AGG | + | chr1_2:7658434-7658453 | Msa0053230:intron | 25.0% |
| ! | ATAAGCTATAAGCTATATCA+GGG | + | chr1_2:7658435-7658454 | Msa0053230:intron | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | - | chr1_2:7658735-7658754 | None:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | + | chr1_2:7658902-7658921 | Msa0053230:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | + | chr1_2:7658932-7658951 | Msa0053230:intron | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | + | chr1_2:7658933-7658952 | Msa0053230:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | + | chr1_2:7659262-7659281 | Msa0053230:intron | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | - | chr1_2:7659355-7659374 | None:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | - | chr1_2:7659463-7659482 | None:intergenic | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | + | chr1_2:7659856-7659875 | Msa0053230:CDS | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | + | chr1_2:7659991-7660010 | Msa0053230:CDS | 25.0% |
| ! | TGAAGCCATTCTATTTATAT+TGG | + | chr1_2:7660483-7660502 | Msa0053230:intron | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | + | chr1_2:7660620-7660639 | Msa0053230:CDS | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | - | chr1_2:7660796-7660815 | None:intergenic | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | - | chr1_2:7660802-7660821 | None:intergenic | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | + | chr1_2:7661050-7661069 | Msa0053230:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | + | chr1_2:7661256-7661275 | Msa0053230:CDS | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | - | chr1_2:7661448-7661467 | None:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | + | chr1_2:7661559-7661578 | Msa0053230:intron | 25.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | + | chr1_2:7661629-7661648 | Msa0053230:CDS | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | + | chr1_2:7661649-7661668 | Msa0053230:CDS | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | + | chr1_2:7661650-7661669 | Msa0053230:CDS | 25.0% |
| ! | GATACTGAAGTATATTATGT+GGG | - | chr1_2:7661780-7661799 | None:intergenic | 25.0% |
| ! | AGATACTGAAGTATATTATG+TGG | - | chr1_2:7661781-7661800 | None:intergenic | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | - | chr1_2:7661953-7661972 | None:intergenic | 25.0% |
| ! | ATATATAAATAAAGATGGGG+TGG | - | chr1_2:7662186-7662205 | None:intergenic | 25.0% |
| !!! | CCTTCTATATTTTAGTTTCA+GGG | - | chr1_2:7662378-7662397 | None:intergenic | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | - | chr1_2:7662790-7662809 | None:intergenic | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | - | chr1_2:7662807-7662826 | None:intergenic | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | - | chr1_2:7662790-7662809 | None:intergenic | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | - | chr1_2:7662807-7662826 | None:intergenic | 25.0% |
| !! | GATTGCATTACATTTTTCAT+AGG | + | chr1_2:7663596-7663615 | Msa0053230:three_prime_UTR | 25.0% |
| !!! | GATTGGATTAGTTTTGTATT+TGG | + | chr1_2:7663628-7663647 | Msa0053230:three_prime_UTR | 25.0% |
| ! | TGTATATTAGATATAACTGG+GGG | + | chr1_2:7663699-7663718 | Msa0053230:three_prime_UTR | 25.0% |
| ! | AGCCAAATTGTTAATCAAAA+TGG | - | chr1_2:7663852-7663871 | None:intergenic | 25.0% |
| AGAACAACAATGTTGGATTT+GGG | - | chr1_2:7657368-7657387 | None:intergenic | 30.0% | |
| TTAGAACAGAACAACAATGT+TGG | - | chr1_2:7657375-7657394 | None:intergenic | 30.0% | |
| !! | CAGTGTTTTTGAGAAGTTTA+AGG | - | chr1_2:7657415-7657434 | None:intergenic | 30.0% |
| !!! | CTTTGGTCTTATTTTCTGAT+GGG | - | chr1_2:7657479-7657498 | None:intergenic | 30.0% |
| !!! | ACTTTGGTCTTATTTTCTGA+TGG | - | chr1_2:7657480-7657499 | None:intergenic | 30.0% |
| !! | TTTGTTGTTTGAAGCTTTAG+TGG | - | chr1_2:7657528-7657547 | None:intergenic | 30.0% |
| ATCATTCAAAACCAAGGTTA+TGG | + | chr1_2:7657571-7657590 | Msa0053230:CDS | 30.0% | |
| TCATTCAAAACCAAGGTTAT+GGG | + | chr1_2:7657572-7657591 | Msa0053230:CDS | 30.0% | |
| !!! | TTTTTTTGTCGGAAGTTGTT+TGG | - | chr1_2:7657637-7657656 | None:intergenic | 30.0% |
| TACAACAACAATAACAACCT+CGG | + | chr1_2:7657665-7657684 | Msa0053230:CDS | 30.0% | |
| !! | ATCTTCAACTGATTTGTTCA+CGG | + | chr1_2:7657815-7657834 | Msa0053230:CDS | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | + | chr1_2:7658183-7658202 | Msa0053230:intron | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | + | chr1_2:7658234-7658253 | Msa0053230:intron | 30.0% |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1_2:7658310-7658329 | None:intergenic | 30.0% | |
| TGTTAGAGAGCTTATGAAAA+CGG | - | chr1_2:7658508-7658527 | None:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | - | chr1_2:7658770-7658789 | None:intergenic | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | - | chr1_2:7658899-7658918 | None:intergenic | 30.0% |
| TATGCAAATTAGAATAGAGG+AGG | + | chr1_2:7658905-7658924 | Msa0053230:intron | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | - | chr1_2:7659197-7659216 | None:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | + | chr1_2:7659196-7659215 | Msa0053230:intron | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | - | chr1_2:7659645-7659664 | None:intergenic | 30.0% | |
| AAAGAATACATGCTCAACAT+TGG | + | chr1_2:7659649-7659668 | Msa0053230:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | + | chr1_2:7659751-7659770 | Msa0053230:CDS | 30.0% | |
| !!! | CTAGTTATTGACCACTTTTT+CGG | - | chr1_2:7659785-7659804 | None:intergenic | 30.0% |
| AGAAGAAGACATTCAATTAG+TGG | + | chr1_2:7659890-7659909 | Msa0053230:CDS | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | - | chr1_2:7660025-7660044 | None:intergenic | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | + | chr1_2:7660027-7660046 | Msa0053230:CDS | 30.0% | |
| TTGCTAGAAATAGAACATGA+AGG | - | chr1_2:7660091-7660110 | None:intergenic | 30.0% | |
| ACCAAAATATTGCATTCACA+TGG | + | chr1_2:7660452-7660471 | Msa0053230:intron | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | - | chr1_2:7660542-7660561 | None:intergenic | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | - | chr1_2:7660719-7660738 | None:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | - | chr1_2:7660764-7660783 | None:intergenic | 30.0% | |
| ! | TTATTTCTTAGGTGGATGAA+AGG | + | chr1_2:7660896-7660915 | Msa0053230:intron | 30.0% |
| TATTTCTTAGGTGGATGAAA+GGG | + | chr1_2:7660897-7660916 | Msa0053230:intron | 30.0% | |
| !! | TTCTTTAGAGCAATATCACA+AGG | - | chr1_2:7661048-7661067 | None:intergenic | 30.0% |
| AGTTTCAAATTCCTGTAGAA+TGG | + | chr1_2:7661233-7661252 | Msa0053230:CDS | 30.0% | |
| !! | TGATAATGGAATTATTGGCA+AGG | + | chr1_2:7661261-7661280 | Msa0053230:CDS | 30.0% |
| ATTGGCAAGGTATACTATAA+TGG | + | chr1_2:7661274-7661293 | Msa0053230:intron | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | + | chr1_2:7661483-7661502 | Msa0053230:intron | 30.0% | |
| ! | TGACTTTGTTTGAACTTCAA+TGG | - | chr1_2:7661679-7661698 | None:intergenic | 30.0% |
| ! | GAAGAAACATCGATTAACAA+TGG | - | chr1_2:7661830-7661849 | None:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | - | chr1_2:7661945-7661964 | None:intergenic | 30.0% |
| !!! | ATTGAGTTGATTCTTTTCAC+TGG | + | chr1_2:7662128-7662147 | Msa0053230:intron | 30.0% |
| ATAGAAAATAGCATCAGCTA+GGG | - | chr1_2:7662245-7662264 | None:intergenic | 30.0% | |
| AATAGAAAATAGCATCAGCT+AGG | - | chr1_2:7662246-7662265 | None:intergenic | 30.0% | |
| GGAGGAAATACAAAGAATTA+AGG | - | chr1_2:7662357-7662376 | None:intergenic | 30.0% | |
| !!! | TCTATATTTTAGTTTCAGGG+AGG | - | chr1_2:7662375-7662394 | None:intergenic | 30.0% |
| CCCTGAAACTAAAATATAGA+AGG | + | chr1_2:7662375-7662394 | Msa0053230:intron | 30.0% | |
| !!! | GCCTTCTATATTTTAGTTTC+AGG | - | chr1_2:7662379-7662398 | None:intergenic | 30.0% |
| ! | TCTTGCAAATTCTTTCTAGT+AGG | + | chr1_2:7662530-7662549 | Msa0053230:intron | 30.0% |
| ! | CTTGCAAATTCTTTCTAGTA+GGG | + | chr1_2:7662531-7662550 | Msa0053230:intron | 30.0% |
| AGCTTATGATGAGTCAAAAA+AGG | + | chr1_2:7662612-7662631 | Msa0053230:intron | 30.0% | |
| TTTGGTTAGAAAAGAATCAG+TGG | - | chr1_2:7662772-7662791 | None:intergenic | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | - | chr1_2:7662850-7662869 | None:intergenic | 30.0% | |
| !!! | AGTCGCAGTTTAGTTTTTTT+TGG | + | chr1_2:7662901-7662920 | Msa0053230:intron | 30.0% |
| !!! | CAGTTTAGTTTTTTTTGGTG+CGG | + | chr1_2:7662906-7662925 | Msa0053230:intron | 30.0% |
| AGCTTATGATGAGTCAAAAA+AGG | + | chr1_2:7662612-7662631 | Msa0053230:intron | 30.0% | |
| TTTGGTTAGAAAAGAATCAG+TGG | - | chr1_2:7662772-7662791 | None:intergenic | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | - | chr1_2:7662850-7662869 | None:intergenic | 30.0% | |
| !!! | AGTCGCAGTTTAGTTTTTTT+TGG | + | chr1_2:7662901-7662920 | Msa0053230:intron | 30.0% |
| !!! | CAGTTTAGTTTTTTTTGGTG+CGG | + | chr1_2:7662906-7662925 | Msa0053230:intron | 30.0% |
| ! | GATTCAGGAATTTTATGTTG+TGG | - | chr1_2:7663389-7663408 | None:intergenic | 30.0% |
| TTAGTAACAAAGACAGATTC+AGG | - | chr1_2:7663404-7663423 | None:intergenic | 30.0% | |
| ! | TATTTGTTAATGCAGTTTGC+AGG | + | chr1_2:7663453-7663472 | Msa0053230:intron | 30.0% |
| TGTAATGCAATCATAGTCTA+TGG | - | chr1_2:7663588-7663607 | None:intergenic | 30.0% | |
| ! | TCTATGATTGCACTACATTT+TGG | + | chr1_2:7663651-7663670 | Msa0053230:three_prime_UTR | 30.0% |
| GTATATTAGATATAACTGGG+GGG | + | chr1_2:7663700-7663719 | Msa0053230:three_prime_UTR | 30.0% | |
| TATATTAGATATAACTGGGG+GGG | + | chr1_2:7663701-7663720 | Msa0053230:three_prime_UTR | 30.0% | |
| !!! | GTAAGAGGTTTTTTCTGTGT+GGG | - | chr1_2:7657324-7657343 | Msa0053220:intron | 35.0% |
| !!! | TGTAAGAGGTTTTTTCTGTG+TGG | - | chr1_2:7657325-7657344 | Msa0053220:intron | 35.0% |
| !! | GTTATTGATGGTGATGTAAG+AGG | - | chr1_2:7657339-7657358 | Msa0053220:intron | 35.0% |
| !!! | TTTGGGGGTTTTGTTATTGA+TGG | - | chr1_2:7657351-7657370 | Msa0053220:CDS | 35.0% |
| AACAACAATGTTGGATTTGG+GGG | - | chr1_2:7657366-7657385 | None:intergenic | 35.0% | |
| GAACAACAATGTTGGATTTG+GGG | - | chr1_2:7657367-7657386 | None:intergenic | 35.0% | |
| CAGAACAACAATGTTGGATT+TGG | - | chr1_2:7657369-7657388 | None:intergenic | 35.0% | |
| CATTCAAAACCAAGGTTATG+GGG | + | chr1_2:7657573-7657592 | Msa0053230:CDS | 35.0% | |
| ! | CAAAAGGGTTAACGTTTTTC+TGG | - | chr1_2:7657704-7657723 | None:intergenic | 35.0% |
| TTGAATGAGGTGGAACAAAA+GGG | - | chr1_2:7657719-7657738 | None:intergenic | 35.0% | |
| ! | GATCTTTTCACTCTTGAATG+AGG | - | chr1_2:7657732-7657751 | None:intergenic | 35.0% |
| AAGAGTGAAAAGATCGTTGA+TGG | + | chr1_2:7657737-7657756 | Msa0053230:CDS | 35.0% | |
| AGAGTGAAAAGATCGTTGAT+GGG | + | chr1_2:7657738-7657757 | Msa0053230:CDS | 35.0% | |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | + | chr1_2:7657854-7657873 | Msa0053230:CDS | 35.0% |
| AGAAAAGGAACCTTACTTGT+AGG | + | chr1_2:7658117-7658136 | Msa0053230:CDS | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | - | chr1_2:7658130-7658149 | None:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | + | chr1_2:7658130-7658149 | Msa0053230:CDS | 35.0% | |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | + | chr1_2:7658166-7658185 | Msa0053230:CDS | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | + | chr1_2:7658269-7658288 | Msa0053230:intron | 35.0% |
| TATTTGCAGCTTATAGCACA+AGG | + | chr1_2:7658326-7658345 | Msa0053230:intron | 35.0% | |
| ATTTGCAGCTTATAGCACAA+GGG | + | chr1_2:7658327-7658346 | Msa0053230:intron | 35.0% | |
| GGCTTATTTGAGCTTATCTA+CGG | - | chr1_2:7658549-7658568 | None:intergenic | 35.0% | |
| ATAAGTGTGCACTTGATCAA+GGG | - | chr1_2:7658590-7658609 | None:intergenic | 35.0% | |
| TATAAGTGTGCACTTGATCA+AGG | - | chr1_2:7658591-7658610 | None:intergenic | 35.0% | |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | - | chr1_2:7658759-7658778 | None:intergenic | 35.0% |
| TCCGAAACTAATAATCTCAC+AGG | + | chr1_2:7658766-7658785 | Msa0053230:intron | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | + | chr1_2:7658878-7658897 | Msa0053230:intron | 35.0% | |
| ! | GCTAGAAGTTGATCAAAACT+GGG | - | chr1_2:7659119-7659138 | None:intergenic | 35.0% |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | - | chr1_2:7659120-7659139 | None:intergenic | 35.0% |
| ACAAACGAGCAGATTAAATG+AGG | + | chr1_2:7659574-7659593 | Msa0053230:CDS | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | + | chr1_2:7659728-7659747 | Msa0053230:CDS | 35.0% | |
| TGTTGAACAAATAACGGCAT+TGG | - | chr1_2:7660019-7660038 | None:intergenic | 35.0% | |
| GAAATAGAACATGAAGGTCT+TGG | - | chr1_2:7660085-7660104 | None:intergenic | 35.0% | |
| ! | TTTTGCATCTAGAGGTAACA+CGG | + | chr1_2:7660186-7660205 | Msa0053230:CDS | 35.0% |
| AATCTCTCTTCATGAGTGAA+TGG | - | chr1_2:7660249-7660268 | None:intergenic | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | + | chr1_2:7660254-7660273 | Msa0053230:CDS | 35.0% | |
| ! | CATGAAGAGAGATTCTAGAA+GGG | + | chr1_2:7660255-7660274 | Msa0053230:CDS | 35.0% |
| ! | GCCATGTGAATGCAATATTT+TGG | - | chr1_2:7660456-7660475 | None:intergenic | 35.0% |
| AAGGCAGATATTGAAACACA+AGG | + | chr1_2:7660591-7660610 | Msa0053230:CDS | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | + | chr1_2:7660659-7660678 | Msa0053230:CDS | 35.0% | |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | + | chr1_2:7660920-7660939 | Msa0053230:CDS | 35.0% |
| ACATTAAGAGAAGCAGCATT+TGG | + | chr1_2:7660961-7660980 | Msa0053230:CDS | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | + | chr1_2:7661210-7661229 | Msa0053230:CDS | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | - | chr1_2:7661247-7661266 | None:intergenic | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | + | chr1_2:7661247-7661266 | Msa0053230:CDS | 35.0% | |
| ATTTGACAAAGATCCTGCAA+TGG | + | chr1_2:7661701-7661720 | Msa0053230:CDS | 35.0% | |
| !! | AGATCCTGCAATGGATTATA+TGG | + | chr1_2:7661710-7661729 | Msa0053230:CDS | 35.0% |
| AGAACCATATAATCCATTGC+AGG | - | chr1_2:7661717-7661736 | None:intergenic | 35.0% | |
| ! | ATGGATTATATGGTTCTCCA+AGG | + | chr1_2:7661720-7661739 | Msa0053230:CDS | 35.0% |
| ATTTGCTTTCAGAATCCATC+AGG | + | chr1_2:7661749-7661768 | Msa0053230:CDS | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | - | chr1_2:7661767-7661786 | None:intergenic | 35.0% | |
| !! | CTTTGTCCATGCTTTTAAGT+TGG | + | chr1_2:7661799-7661818 | Msa0053230:intron | 35.0% |
| ! | GAAACATCGATTAACAATGG+AGG | - | chr1_2:7661827-7661846 | None:intergenic | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | + | chr1_2:7661967-7661986 | Msa0053230:intron | 35.0% |
| TAATAATGTAGATCTGCCCT+TGG | - | chr1_2:7661986-7662005 | None:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | + | chr1_2:7661987-7662006 | Msa0053230:intron | 35.0% | |
| ACCTACGATTGTTCATGAAT+CGG | + | chr1_2:7662020-7662039 | Msa0053230:intron | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | + | chr1_2:7662088-7662107 | Msa0053230:intron | 35.0% | |
| TATAAATAAAGATGGGGTGG+CGG | - | chr1_2:7662183-7662202 | None:intergenic | 35.0% | |
| ATAAACCAATATAGCGCAGA+GGG | - | chr1_2:7662279-7662298 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTTTTTGGTGCGGT+TGG | + | chr1_2:7662910-7662929 | Msa0053230:intron | 35.0% |
| !!! | TTAGTTTTTTTTGGTGCGGT+TGG | + | chr1_2:7662910-7662929 | Msa0053230:intron | 35.0% |
| ! | AGGAATTTTATGTTGTGGCT+AGG | - | chr1_2:7663384-7663403 | None:intergenic | 35.0% |
| AGAAACAATGCATGCATTTG+AGG | + | chr1_2:7663488-7663507 | Msa0053230:CDS | 35.0% | |
| ! | CATTTTTCATAGGTGCAATC+TGG | + | chr1_2:7663606-7663625 | Msa0053230:three_prime_UTR | 35.0% |
| CCTTCATACTGAAACACTTG+TGG | - | chr1_2:7657440-7657459 | None:intergenic | 40.0% | |
| CCACAAGTGTTTCAGTATGA+AGG | + | chr1_2:7657437-7657456 | Msa0053230:exon | 40.0% | |
| CTTGAATGAGGTGGAACAAA+AGG | - | chr1_2:7657720-7657739 | None:intergenic | 40.0% | |
| ! | CTTTTCACTCTTGAATGAGG+TGG | - | chr1_2:7657729-7657748 | None:intergenic | 40.0% |
| GGGTGATTTATCATGTTCTC+AGG | + | chr1_2:7657758-7657777 | Msa0053230:CDS | 40.0% | |
| ! | CTATGTGTTGGAAAAGCATG+TGG | - | chr1_2:7657789-7657808 | None:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACACAT+AGG | + | chr1_2:7657787-7657806 | Msa0053230:CDS | 40.0% |
| GAAGATTGTCTCCTATGTGT+TGG | - | chr1_2:7657801-7657820 | None:intergenic | 40.0% | |
| !! | AACTGATTTGTTCACGGAGT+TGG | + | chr1_2:7657821-7657840 | Msa0053230:CDS | 40.0% |
| ! | AGCTAAGTTGAATGCTGAGT+TGG | + | chr1_2:7657884-7657903 | Msa0053230:CDS | 40.0% |
| AAATGGCTTATCCGAGCAAT+TGG | + | chr1_2:7657977-7657996 | Msa0053230:CDS | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | - | chr1_2:7657991-7658010 | None:intergenic | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | + | chr1_2:7657991-7658010 | Msa0053230:CDS | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | + | chr1_2:7658025-7658044 | Msa0053230:CDS | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | + | chr1_2:7658029-7658048 | Msa0053230:CDS | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | + | chr1_2:7658072-7658091 | Msa0053230:CDS | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | + | chr1_2:7658082-7658101 | Msa0053230:CDS | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | + | chr1_2:7658102-7658121 | Msa0053230:CDS | 40.0% | |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | + | chr1_2:7658239-7658258 | Msa0053230:intron | 40.0% |
| TAAACAACTTAGGGCCTGTT+TGG | + | chr1_2:7658293-7658312 | Msa0053230:intron | 40.0% | |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | - | chr1_2:7658575-7658594 | None:intergenic | 40.0% |
| TTTCGGAGAGCTTATGGAAA+AGG | - | chr1_2:7658753-7658772 | None:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | + | chr1_2:7658782-7658801 | Msa0053230:intron | 40.0% | |
| AGCTAATCCAAACAATTCCG+AGG | + | chr1_2:7658817-7658836 | Msa0053230:intron | 40.0% | |
| ! | TCCACACTGCCATTTAACTT+AGG | + | chr1_2:7659343-7659362 | Msa0053230:intron | 40.0% |
| ACCTAAGTTAAATGGCAGTG+TGG | - | chr1_2:7659347-7659366 | None:intergenic | 40.0% | |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | + | chr1_2:7659499-7659518 | Msa0053230:CDS | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | - | chr1_2:7659507-7659526 | None:intergenic | 40.0% |
| AACCTTCTACTTGTTTGCTC+AGG | - | chr1_2:7659553-7659572 | None:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | + | chr1_2:7659577-7659596 | Msa0053230:CDS | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | - | chr1_2:7659612-7659631 | None:intergenic | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | - | chr1_2:7659694-7659713 | None:intergenic | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | + | chr1_2:7659771-7659790 | Msa0053230:CDS | 40.0% | |
| ! | TTGGATTGAATCGATTTCGG+AGG | + | chr1_2:7659859-7659878 | Msa0053230:CDS | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | + | chr1_2:7659860-7659879 | Msa0053230:CDS | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | + | chr1_2:7659907-7659926 | Msa0053230:CDS | 40.0% |
| TTCTAATAGCTCAGAGGAAG+AGG | + | chr1_2:7659913-7659932 | Msa0053230:CDS | 40.0% | |
| !! | AACAATGTGCTTTGGAGAAG+AGG | + | chr1_2:7660035-7660054 | Msa0053230:CDS | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | + | chr1_2:7660036-7660055 | Msa0053230:CDS | 40.0% |
| ATAGAACATGAAGGTCTTGG+AGG | - | chr1_2:7660082-7660101 | None:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | - | chr1_2:7660178-7660197 | None:intergenic | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | - | chr1_2:7660181-7660200 | None:intergenic | 40.0% | |
| ! | CCTATGAGTTTTGCATCTAG+AGG | + | chr1_2:7660178-7660197 | Msa0053230:CDS | 40.0% |
| TCTAGAAGGGATTCTTCAAG+TGG | + | chr1_2:7660268-7660287 | Msa0053230:CDS | 40.0% | |
| CAGCAAGTAAATGTGACGAA+CGG | - | chr1_2:7660357-7660376 | None:intergenic | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | + | chr1_2:7660673-7660692 | Msa0053230:CDS | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | - | chr1_2:7660927-7660946 | None:intergenic | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | - | chr1_2:7660946-7660965 | None:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | + | chr1_2:7661008-7661027 | Msa0053230:CDS | 40.0% | |
| GTTTGTGTTTCCCTGTAGAA+TGG | + | chr1_2:7661153-7661172 | Msa0053230:intron | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | + | chr1_2:7661338-7661357 | Msa0053230:intron | 40.0% | |
| GTATCCTATGATCGTCTTCT+AGG | + | chr1_2:7661513-7661532 | Msa0053230:intron | 40.0% | |
| AGTTCCTAGAAGACGATCAT+AGG | - | chr1_2:7661520-7661539 | None:intergenic | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | - | chr1_2:7661740-7661759 | None:intergenic | 40.0% | |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | - | chr1_2:7661930-7661949 | None:intergenic | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | + | chr1_2:7661966-7661985 | Msa0053230:intron | 40.0% |
| TTCATGAACAATCGTAGGTG+AGG | - | chr1_2:7662019-7662038 | None:intergenic | 40.0% | |
| ! | ACCGATTCATGAACAATCGT+AGG | - | chr1_2:7662024-7662043 | None:intergenic | 40.0% |
| ACTGAACCATGAACAATCCT+AGG | - | chr1_2:7662082-7662101 | None:intergenic | 40.0% | |
| !! | GAGTTGATTCTTTTCACTGG+CGG | + | chr1_2:7662131-7662150 | Msa0053230:intron | 40.0% |
| TGGAAAGTGGATGCTGAAAA+AGG | + | chr1_2:7662218-7662237 | Msa0053230:intron | 40.0% | |
| GATAAACCAATATAGCGCAG+AGG | - | chr1_2:7662280-7662299 | None:intergenic | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr1_2:7662747-7662766 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr1_2:7662748-7662767 | None:intergenic | 40.0% | |
| GGTTAGAAAAGAATCAGTGG+CGG | - | chr1_2:7662769-7662788 | None:intergenic | 40.0% | |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | + | chr1_2:7662918-7662937 | Msa0053230:intron | 40.0% |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr1_2:7662747-7662766 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr1_2:7662748-7662767 | None:intergenic | 40.0% | |
| GGTTAGAAAAGAATCAGTGG+CGG | - | chr1_2:7662769-7662788 | None:intergenic | 40.0% | |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | + | chr1_2:7662918-7662937 | Msa0053230:intron | 40.0% |
| TTGTTAATGCAGTTTGCAGG+AGG | + | chr1_2:7663456-7663475 | Msa0053230:intron | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | + | chr1_2:7663457-7663476 | Msa0053230:intron | 40.0% | |
| TAGTCTATGGCTTACTGAGA+TGG | - | chr1_2:7663575-7663594 | None:intergenic | 40.0% | |
| TTCATAGGTGCAATCTGGAT+TGG | + | chr1_2:7663611-7663630 | Msa0053230:three_prime_UTR | 40.0% | |
| !! | ACATTTTGGTCGCAAGAGAT+TGG | + | chr1_2:7663665-7663684 | Msa0053230:three_prime_UTR | 40.0% |
| TGGGGTGCACACATTGTAAA+AGG | + | chr1_2:7657591-7657610 | Msa0053230:CDS | 45.0% | |
| CTGGTTAGTAACAACATCCG+AGG | - | chr1_2:7657685-7657704 | None:intergenic | 45.0% | |
| !! | ATGCTGAGTTGGTTGAGTGT+AGG | + | chr1_2:7657895-7657914 | Msa0053230:CDS | 45.0% |
| GTGTAGGAAGAATCAGAGTG+AGG | + | chr1_2:7657911-7657930 | Msa0053230:CDS | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | + | chr1_2:7658004-7658023 | Msa0053230:CDS | 45.0% | |
| !! | CTGTGGATTGGAAAGACAAG+AGG | + | chr1_2:7658016-7658035 | Msa0053230:CDS | 45.0% |
| ! | GGGCATGTTTGGAATTGGAT+TGG | - | chr1_2:7658570-7658589 | None:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | - | chr1_2:7658581-7658600 | None:intergenic | 45.0% |
| ! | AAGCTTTATCCCACTGAGTG+GGG | - | chr1_2:7658852-7658871 | None:intergenic | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | - | chr1_2:7658853-7658872 | None:intergenic | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | + | chr1_2:7659125-7659144 | Msa0053230:intron | 45.0% |
| GACCTGAGCAAACAAGTAGA+AGG | + | chr1_2:7659548-7659567 | Msa0053230:CDS | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | + | chr1_2:7659580-7659599 | Msa0053230:CDS | 45.0% | |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | + | chr1_2:7659600-7659619 | Msa0053230:CDS | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | + | chr1_2:7659601-7659620 | Msa0053230:CDS | 45.0% |
| CTGCTACTCACAACAGATTG+AGG | - | chr1_2:7659695-7659714 | None:intergenic | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | + | chr1_2:7659695-7659714 | Msa0053230:CDS | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | - | chr1_2:7660175-7660194 | None:intergenic | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | + | chr1_2:7660271-7660290 | Msa0053230:CDS | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | - | chr1_2:7660310-7660329 | None:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | + | chr1_2:7660319-7660338 | Msa0053230:CDS | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | + | chr1_2:7660632-7660651 | Msa0053230:CDS | 45.0% | |
| AAGTGGCTCGATGATGAACT+TGG | + | chr1_2:7660690-7660709 | Msa0053230:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | - | chr1_2:7661039-7661058 | None:intergenic | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | - | chr1_2:7661040-7661059 | None:intergenic | 45.0% | |
| TCCCTGTAGAATGGAACGTA+CGG | + | chr1_2:7661162-7661181 | Msa0053230:intron | 45.0% | |
| ACCGTACGTTCCATTCTACA+GGG | - | chr1_2:7661166-7661185 | None:intergenic | 45.0% | |
| AACCGTACGTTCCATTCTAC+AGG | - | chr1_2:7661167-7661186 | None:intergenic | 45.0% | |
| ! | GAGGCACCAACTTAAAAGCA+TGG | - | chr1_2:7661808-7661827 | None:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | - | chr1_2:7661925-7661944 | None:intergenic | 45.0% |
| GCCCTTGGTCAATACTCAAT+AGG | - | chr1_2:7661971-7661990 | None:intergenic | 45.0% | |
| ! | ATTCTTTTCACTGGCGGAAC+TGG | + | chr1_2:7662137-7662156 | Msa0053230:intron | 45.0% |
| ! | TTCTTTTCACTGGCGGAACT+GGG | + | chr1_2:7662138-7662157 | Msa0053230:intron | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr1_2:7662744-7662763 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr1_2:7662741-7662760 | Msa0053230:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr1_2:7662749-7662768 | None:intergenic | 45.0% | |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr1_2:7662744-7662763 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr1_2:7662741-7662760 | Msa0053230:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr1_2:7662749-7662768 | None:intergenic | 45.0% | |
| !!! | ATATAACTGGGGGGGCATTT+TGG | + | chr1_2:7663709-7663728 | Msa0053230:three_prime_UTR | 45.0% |
| !!! | TATAACTGGGGGGGCATTTT+GGG | + | chr1_2:7663710-7663729 | Msa0053230:three_prime_UTR | 45.0% |
| !! | AAAAATATATAAATAAAGAT+GGG | - | chr1_2:7662190-7662209 | None:intergenic | 5.0% |
| !! | AAAAAATATATAAATAAAGA+TGG | - | chr1_2:7662191-7662210 | None:intergenic | 5.0% |
| !!! | TTATATATTTTTTTATATAC+TGG | + | chr1_2:7662198-7662217 | Msa0053230:intron | 5.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | - | chr1_2:7662827-7662846 | None:intergenic | 5.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | - | chr1_2:7662827-7662846 | None:intergenic | 5.0% |
| ATGTGTGCACCCCATAACCT+TGG | - | chr1_2:7657585-7657604 | None:intergenic | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | + | chr1_2:7657999-7658018 | Msa0053230:CDS | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | - | chr1_2:7658827-7658846 | None:intergenic | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | - | chr1_2:7658848-7658867 | None:intergenic | 50.0% | |
| ! | CCAAGCTTTATCCCACTGAG+TGG | - | chr1_2:7658854-7658873 | None:intergenic | 50.0% |
| CCACTCAGTGGGATAAAGCT+TGG | + | chr1_2:7658851-7658870 | Msa0053230:intron | 50.0% | |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | + | chr1_2:7660044-7660063 | Msa0053230:CDS | 50.0% |
| ! | GAAGGTCTTGGAGGTGGATT+AGG | - | chr1_2:7660073-7660092 | None:intergenic | 50.0% |
| GAACATGAAGGTCTTGGAGG+TGG | - | chr1_2:7660079-7660098 | None:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | - | chr1_2:7660169-7660188 | None:intergenic | 50.0% |
| GCAAAACTCATAGGAGGTGG+TGG | - | chr1_2:7660172-7660191 | None:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | + | chr1_2:7660192-7660211 | Msa0053230:CDS | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | + | chr1_2:7660213-7660232 | Msa0053230:CDS | 50.0% | |
| AAAACGAGCACCACAAGTGG+TGG | + | chr1_2:7660216-7660235 | Msa0053230:CDS | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | - | chr1_2:7660229-7660248 | None:intergenic | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | - | chr1_2:7661025-7661044 | None:intergenic | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | + | chr1_2:7661185-7661204 | Msa0053230:CDS | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | + | chr1_2:7661186-7661205 | Msa0053230:CDS | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | - | chr1_2:7661201-7661220 | None:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | + | chr1_2:7661903-7661922 | Msa0053230:intron | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | - | chr1_2:7661912-7661931 | None:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | - | chr1_2:7662077-7662096 | None:intergenic | 50.0% | |
| ! | TCTTTTCACTGGCGGAACTG+GGG | + | chr1_2:7662139-7662158 | Msa0053230:intron | 50.0% |
| ! | AAATAAAGATGGGGTGGCGG+TGG | - | chr1_2:7662180-7662199 | None:intergenic | 50.0% |
| TGCTTCCCTCTGCGCTATAT+TGG | + | chr1_2:7662271-7662290 | Msa0053230:intron | 50.0% | |
| GGCTTACTGAGATGGTAAGC+TGG | - | chr1_2:7663567-7663586 | None:intergenic | 50.0% | |
| AAGCCTGAGCAGTGATGCCT+CGG | - | chr1_2:7659519-7659538 | None:intergenic | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | - | chr1_2:7661022-7661041 | None:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | + | chr1_2:7661019-7661038 | Msa0053230:CDS | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | + | chr1_2:7662062-7662081 | Msa0053230:intron | 55.0% |
| GCCTCGCCTAGGATTGTTCA+TGG | + | chr1_2:7662073-7662092 | Msa0053230:intron | 55.0% | |
| ! | CTTTTCACTGGCGGAACTGG+GGG | + | chr1_2:7662140-7662159 | Msa0053230:intron | 55.0% |
| ! | TTTTCACTGGCGGAACTGGG+GGG | + | chr1_2:7662141-7662160 | Msa0053230:intron | 55.0% |
| TGTAGCCGACCCCACTCAGT+GGG | + | chr1_2:7658840-7658859 | Msa0053230:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | + | chr1_2:7659513-7659532 | Msa0053230:CDS | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | - | chr1_2:7658837-7658856 | None:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | + | chr1_2:7658839-7658858 | Msa0053230:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | - | chr1_2:7660163-7660182 | None:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | - | chr1_2:7660166-7660185 | None:intergenic | 65.0% |
| TCACTGGCGGAACTGGGGGG+TGG | + | chr1_2:7662144-7662163 | Msa0053230:intron | 70.0% | |
| GCGGAACTGGGGGGTGGCAA+GGG | + | chr1_2:7662150-7662169 | Msa0053230:intron | 70.0% | |
| CGGAACTGGGGGGTGGCAAG+GGG | + | chr1_2:7662151-7662170 | Msa0053230:intron | 70.0% | |
| GGAACTGGGGGGTGGCAAGG+GGG | + | chr1_2:7662152-7662171 | Msa0053230:intron | 70.0% | |
| GGCGGAGGTGGAGGTGGAGG+AGG | - | chr1_2:7660151-7660170 | None:intergenic | 75.0% | |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | - | chr1_2:7660154-7660173 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | - | chr1_2:7660157-7660176 | None:intergenic | 75.0% |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | - | chr1_2:7660160-7660179 | None:intergenic | 75.0% |
| GGCGGAACTGGGGGGTGGCA+AGG | + | chr1_2:7662149-7662168 | Msa0053230:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 7657300 | 7663873 | 7657300 | ID=Msa0053230;Name=Msa0053230 |
| chr1_2 | mRNA | 7657300 | 7663873 | 7657300 | ID=Msa0053230-mRNA-1;Parent=Msa0053230;Name=Msa0053230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=153|1|1|1|1|1|7|325|756 |
| chr1_2 | exon | 7657300 | 7658187 | 7657300 | ID=Msa0053230-mRNA-1:exon:2624;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7659491 | 7660375 | 7659491 | ID=Msa0053230-mRNA-1:exon:2625;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7660588 | 7660719 | 7660588 | ID=Msa0053230-mRNA-1:exon:2626;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7660907 | 7661088 | 7660907 | ID=Msa0053230-mRNA-1:exon:2627;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7661171 | 7661282 | 7661171 | ID=Msa0053230-mRNA-1:exon:2628;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7661627 | 7661770 | 7661627 | ID=Msa0053230-mRNA-1:exon:2629;Parent=Msa0053230-mRNA-1 |
| chr1_2 | exon | 7663468 | 7663873 | 7663468 | ID=Msa0053230-mRNA-1:exon:2630;Parent=Msa0053230-mRNA-1 |
| chr1_2 | five_prime_UTR | 7657300 | 7657452 | 7657300 | ID=Msa0053230-mRNA-1:five_prime_utr;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7657453 | 7658187 | 7657453 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7659491 | 7660375 | 7659491 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7660588 | 7660719 | 7660588 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7660907 | 7661088 | 7660907 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7661171 | 7661282 | 7661171 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7661627 | 7661770 | 7661627 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | CDS | 7663468 | 7663548 | 7663468 | ID=Msa0053230-mRNA-1:cds;Parent=Msa0053230-mRNA-1 |
| chr1_2 | three_prime_UTR | 7663549 | 7663873 | 7663549 | ID=Msa0053230-mRNA-1:three_prime_utr;Parent=Msa0053230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
