Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098520 | XP_003589006.1 | 98.942 | 756 | 5 | 2 | 1 | 755 | 1 | 754 | 0.0 | 1533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098520 | sp|Q9LI74|CHUP1_ARATH | 62.264 | 265 | 99 | 1 | 486 | 749 | 718 | 982 | 1.54e-106 | 352 |
| Msa0098520 | sp|Q9LI74|CHUP1_ARATH | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.11e-25 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098520 | G7IB73 | 98.942 | 756 | 5 | 2 | 1 | 755 | 1 | 754 | 0.0 | 1533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0098520 | 0.802118 | 6.528409e-49 | -8.615850e-47 |
| Msa0048510 | Msa0098520 | 0.816593 | 5.105482e-52 | -8.615850e-47 |
| Msa0053230 | Msa0098520 | 0.940619 | 1.710778e-100 | -8.615850e-47 |
| Msa0065020 | Msa0098520 | 0.817827 | 2.694396e-52 | -8.615850e-47 |
| Msa0077560 | Msa0098520 | 0.809373 | 1.954122e-50 | -8.615850e-47 |
| Msa0094780 | Msa0098520 | 0.820636 | 6.177026e-53 | -8.615850e-47 |
| Msa0098520 | Msa0098730 | 0.902075 | 1.403556e-78 | -8.615850e-47 |
| Msa0098520 | Msa0190110 | 0.820402 | 6.990833e-53 | -8.615850e-47 |
| Msa0098520 | Msa0200050 | 0.810304 | 1.232315e-50 | -8.615850e-47 |
| Msa0098520 | Msa0213030 | 0.822415 | 2.397823e-53 | -8.615850e-47 |
| Msa0098520 | Msa0225860 | 0.813806 | 2.123675e-51 | -8.615850e-47 |
| Msa0098520 | Msa0260510 | 0.800433 | 1.444254e-48 | -8.615850e-47 |
| Msa0098520 | Msa0269210 | 0.808226 | 3.437538e-50 | -8.615850e-47 |
| Msa0098520 | Msa0271880 | 0.835997 | 1.210935e-56 | -8.615850e-47 |
| Msa0098520 | Msa0310850 | 0.821212 | 4.553051e-53 | -8.615850e-47 |
| Msa0098520 | Msa0481890 | 0.834823 | 2.398732e-56 | -8.615850e-47 |
| Msa0098520 | Msa0531960 | 0.802383 | 5.758343e-49 | -8.615850e-47 |
| Msa0098520 | Msa0580370 | 0.811860 | 5.667595e-51 | -8.615850e-47 |
| Msa0098520 | Msa0588920 | 0.805088 | 1.580037e-49 | -8.615850e-47 |
| Msa0098520 | Msa0621710 | 0.801862 | 7.368874e-49 | -8.615850e-47 |
| Msa0098520 | Msa0666700 | 0.818829 | 1.598236e-52 | -8.615850e-47 |
| Msa0098520 | Msa0702810 | 0.808106 | 3.645362e-50 | -8.615850e-47 |
| Msa0098520 | Msa0709440 | 0.836362 | 9.785206e-57 | -8.615850e-47 |
| Msa0098520 | Msa0709630 | 0.817554 | 3.104389e-52 | -8.615850e-47 |
| Msa0098520 | Msa0714790 | 0.806715 | 7.190700e-50 | -8.615850e-47 |
| Msa0098520 | Msa0735780 | 0.807588 | 4.697762e-50 | -8.615850e-47 |
| Msa0098520 | Msa0773630 | 0.805233 | 1.473711e-49 | -8.615850e-47 |
| Msa0098520 | Msa0777750 | 0.807334 | 5.318832e-50 | -8.615850e-47 |
| Msa0098520 | Msa0795870 | 0.812422 | 4.273362e-51 | -8.615850e-47 |
| Msa0098520 | Msa0824450 | 0.817811 | 2.716538e-52 | -8.615850e-47 |
| Msa0098520 | Msa0828970 | 0.811616 | 6.405504e-51 | -8.615850e-47 |
| Msa0098520 | Msa0833650 | 0.810596 | 1.065770e-50 | -8.615850e-47 |
| Msa0098520 | Msa0842070 | 0.802285 | 6.030906e-49 | -8.615850e-47 |
| Msa0098520 | Msa0855230 | 0.801096 | 1.057841e-48 | -8.615850e-47 |
| Msa0098520 | Msa0863620 | 0.812719 | 3.679514e-51 | -8.615850e-47 |
| Msa0098520 | Msa0931590 | 0.803947 | 2.732773e-49 | -8.615850e-47 |
| Msa0098520 | Msa0966320 | 0.812663 | 3.784725e-51 | -8.615850e-47 |
| Msa0098520 | Msa1084530 | 0.835210 | 1.916107e-56 | -8.615850e-47 |
| Msa0098520 | Msa1125820 | 0.835140 | 1.995118e-56 | -8.615850e-47 |
| Msa0098520 | Msa1125990 | 0.839442 | 1.581136e-57 | -8.615850e-47 |
| Msa0098520 | Msa1132840 | 0.816239 | 6.127350e-52 | -8.615850e-47 |
| Msa0098520 | Msa1171290 | 0.836894 | 7.160546e-57 | -8.615850e-47 |
| Msa0098520 | Msa1192570 | 0.845910 | 3.023581e-59 | -8.615850e-47 |
| Msa0098520 | Msa1208950 | 0.818879 | 1.556609e-52 | -8.615850e-47 |
| Msa0098520 | Msa1215870 | 0.827171 | 1.812710e-54 | -8.615850e-47 |
| Msa0098520 | Msa1307630 | 0.808347 | 3.239269e-50 | -8.615850e-47 |
| Msa0098520 | Msa1343180 | 0.808149 | 3.568918e-50 | -8.615850e-47 |
| Msa0098520 | Msa1387440 | 0.804005 | 2.658233e-49 | -8.615850e-47 |
| Msa0098520 | Msa1389690 | 0.952956 | 7.877439e-111 | -8.615850e-47 |
| Msa0098520 | Msa1429070 | 0.802136 | 6.474696e-49 | -8.615850e-47 |
| Msa0098520 | Msa1450190 | 0.800660 | 1.298621e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098520 | MtrunA17_Chr1g0151531 | 98.942 | 756 | 5 | 2 | 1 | 755 | 1 | 754 | 0.0 | 1533 |
| Msa0098520 | MtrunA17_Chr5g0422391 | 62.595 | 262 | 98 | 0 | 486 | 747 | 716 | 977 | 2.62e-111 | 361 |
| Msa0098520 | MtrunA17_Chr5g0422391 | 37.288 | 236 | 85 | 6 | 127 | 299 | 126 | 361 | 7.69e-29 | 124 |
| Msa0098520 | MtrunA17_Chr4g0045981 | 62.313 | 268 | 95 | 3 | 484 | 749 | 345 | 608 | 1.81e-109 | 346 |
| Msa0098520 | MtrunA17_Chr1g0198861 | 62.214 | 262 | 98 | 1 | 486 | 747 | 705 | 965 | 4.97e-109 | 355 |
| Msa0098520 | MtrunA17_Chr1g0198861 | 33.468 | 248 | 90 | 5 | 127 | 299 | 127 | 374 | 1.40e-25 | 113 |
| Msa0098520 | MtrunA17_Chr4g0069431 | 50.545 | 275 | 136 | 0 | 472 | 746 | 280 | 554 | 1.55e-88 | 290 |
| Msa0098520 | MtrunA17_Chr5g0430701 | 49.057 | 265 | 130 | 4 | 486 | 749 | 160 | 420 | 3.27e-82 | 269 |
| Msa0098520 | MtrunA17_Chr2g0307341 | 41.053 | 95 | 51 | 1 | 205 | 299 | 193 | 282 | 4.90e-12 | 69.3 |
| Msa0098520 | MtrunA17_Chr2g0330791 | 32.558 | 172 | 85 | 6 | 145 | 299 | 204 | 361 | 1.68e-11 | 67.4 |
| Msa0098520 | MtrunA17_Chr8g0340991 | 38.144 | 97 | 57 | 1 | 203 | 299 | 278 | 371 | 2.64e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098520 | AT3G25690.3 | 62.264 | 265 | 99 | 1 | 486 | 749 | 577 | 841 | 7.60e-109 | 352 |
| Msa0098520 | AT3G25690.3 | 53.333 | 105 | 49 | 0 | 195 | 299 | 119 | 223 | 2.49e-25 | 112 |
| Msa0098520 | AT3G25690.1 | 62.264 | 265 | 99 | 1 | 486 | 749 | 718 | 982 | 1.56e-107 | 352 |
| Msa0098520 | AT3G25690.1 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.20e-26 | 115 |
| Msa0098520 | AT3G25690.2 | 62.264 | 265 | 99 | 1 | 486 | 749 | 718 | 982 | 1.56e-107 | 352 |
| Msa0098520 | AT3G25690.2 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.20e-26 | 115 |
| Msa0098520 | AT3G25690.6 | 62.264 | 265 | 99 | 1 | 486 | 749 | 718 | 982 | 1.56e-107 | 352 |
| Msa0098520 | AT3G25690.6 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.20e-26 | 115 |
| Msa0098520 | AT3G25690.4 | 62.264 | 265 | 99 | 1 | 486 | 749 | 718 | 982 | 1.56e-107 | 352 |
| Msa0098520 | AT3G25690.4 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.20e-26 | 115 |
| Msa0098520 | AT3G25690.5 | 62.264 | 265 | 99 | 1 | 486 | 749 | 720 | 984 | 1.76e-107 | 351 |
| Msa0098520 | AT3G25690.5 | 34.894 | 235 | 90 | 5 | 128 | 299 | 132 | 366 | 5.53e-26 | 115 |
| Msa0098520 | AT4G18570.1 | 60.806 | 273 | 98 | 4 | 483 | 749 | 350 | 619 | 2.30e-103 | 331 |
| Msa0098520 | AT1G48280.1 | 52.256 | 266 | 127 | 0 | 481 | 746 | 274 | 539 | 1.09e-89 | 293 |
| Msa0098520 | AT4G18570.2 | 59.709 | 206 | 76 | 3 | 483 | 682 | 350 | 554 | 8.12e-73 | 248 |
| Msa0098520 | AT1G07120.1 | 46.097 | 269 | 132 | 4 | 486 | 750 | 128 | 387 | 1.24e-71 | 239 |
| Msa0098520 | AT1G07120.2 | 45.771 | 201 | 100 | 3 | 486 | 682 | 128 | 323 | 3.14e-48 | 173 |
Find 164 sgRNAs with CRISPR-Local
Find 381 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | 1_3:-4543331 | None:intergenic |
| TGTTGTATATTAGATATAAC+TGG | 0.255930 | 1_3:+4547113 | Msa0098520:three_prime_UTR |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | 1_3:-4543981 | None:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | 1_3:+4542005 | Msa0098520:CDS |
| AGCCAAATTGTTAATCAAAA+TGG | 0.263184 | 1_3:-4547266 | None:intergenic |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | 1_3:+4544877 | Msa0098520:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | 1_3:+4545083 | Msa0098520:CDS |
| CAGAACAACAATGTTGGATT+TGG | 0.279832 | 1_3:-4541244 | None:intergenic |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | 1_3:+4545456 | Msa0098520:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | 1_3:-4543978 | None:intergenic |
| AAATGATCACTACTAGTTAT+TGG | 0.298597 | 1_3:-4543621 | None:intergenic |
| ATCATTCAAAACCAAGGTTA+TGG | 0.304659 | 1_3:+4541449 | Msa0098520:CDS |
| TCTATGATTGCACTACATTT+TGG | 0.309549 | 1_3:+4547068 | Msa0098520:three_prime_UTR |
| TGGGGTGCACACATTGTAAA+AGG | 0.310063 | 1_3:+4541469 | Msa0098520:CDS |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | 1_3:+4545537 | Msa0098520:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | 1_3:+4541957 | Msa0098520:CDS |
| AGAACAACAATGTTGGATTT+GGG | 0.330888 | 1_3:-4541243 | None:intergenic |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | 1_3:-4543984 | None:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | 1_3:+4541729 | Msa0098520:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | 1_3:-4543436 | None:intergenic |
| GAAGGTCTTGGAGGTGGATT+AGG | 0.341697 | 1_3:-4543897 | None:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | 1_3:-4543975 | None:intergenic |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | 1_3:+4543683 | Msa0098520:CDS |
| TGTAATGCAATCATAGTCTA+TGG | 0.350020 | 1_3:-4547002 | None:intergenic |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | 1_3:-4544770 | None:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | 1_3:+4546870 | Msa0098520:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | 1_3:-4544864 | None:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | 1_3:+4543717 | Msa0098520:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | 1_3:+4544788 | Msa0098520:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | 1_3:+4545074 | Msa0098520:CDS |
| AACTGATTTGTTCACGGAGT+TGG | 0.390136 | 1_3:+4541696 | Msa0098520:CDS |
| TTTGAATGATTATTGTTGTT+GGG | 0.391699 | 1_3:-4541436 | None:intergenic |
| TCATTCAAAACCAAGGTTAT+GGG | 0.394475 | 1_3:+4541450 | Msa0098520:CDS |
| CTTGAATGAGGTGGAACAAA+AGG | 0.398864 | 1_3:-4541592 | None:intergenic |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | 1_3:-4544751 | None:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | 1_3:-4543987 | None:intergenic |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | 1_3:+4543854 | Msa0098520:CDS |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | 1_3:-4543377 | None:intergenic |
| GAAATAGAACATGAAGGTCT+TGG | 0.415313 | 1_3:-4543909 | None:intergenic |
| GGGTGATTTGTCATGTTCTC+AGG | 0.415794 | 1_3:+4541633 | Msa0098520:CDS |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | 1_3:+4546905 | Msa0098520:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | 1_3:+4541852 | Msa0098520:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | 1_3:+4544081 | Msa0098520:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | 1_3:+4543578 | Msa0098520:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | 1_3:+4543862 | Msa0098520:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | 1_3:-4544134 | None:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | 1_3:-4544005 | None:intergenic |
| GATGTTCGTAGCAGCATGAT+TGG | 0.434922 | 1_3:+4544146 | Msa0098520:CDS |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | 1_3:-4545503 | None:intergenic |
| ATCTTCAACTGATTTGTTCA+CGG | 0.437733 | 1_3:+4541690 | Msa0098520:CDS |
| AAGAGTGAAAAGATCGTTGA+TGG | 0.445561 | 1_3:+4541612 | Msa0098520:CDS |
| TTCATAGGTGCAATCTGGAT+TGG | 0.447662 | 1_3:+4547028 | Msa0098520:three_prime_UTR |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | 1_3:+4543340 | Msa0098520:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | 1_3:-4543990 | None:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | 1_3:+4545060 | Msa0098520:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | 1_3:+4541992 | Msa0098520:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | 1_3:+4545576 | Msa0098520:CDS |
| CCACAAGTGTTTCAGTATGA+AGG | 0.460036 | 1_3:+4541315 | Msa0098520:exon |
| ATTGATGATGATGATGTAAG+AGG | 0.460827 | 1_3:-4541211 | None:intergenic |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | 1_3:+4541977 | Msa0098520:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | 1_3:-4544849 | None:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | 1_3:+4541900 | Msa0098520:CDS |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | 1_3:-4542002 | None:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | 1_3:-4545564 | None:intergenic |
| TTTGTTGTTTGAAGCTTTGG+TGG | 0.483857 | 1_3:-4541403 | None:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | 1_3:-4543519 | None:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | 1_3:-4545541 | None:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | 1_3:+4543740 | Msa0098520:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | 1_3:+4543871 | Msa0098520:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | 1_3:+4543818 | Msa0098520:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | 1_3:-4544073 | None:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | 1_3:+4544724 | Msa0098520:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | 1_3:+4544447 | Msa0098520:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | 1_3:+4543375 | Msa0098520:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | 1_3:-4543849 | None:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | 1_3:-4545071 | None:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | 1_3:+4544723 | Msa0098520:intron |
| GTTGTATATTAGATATAACT+GGG | 0.523844 | 1_3:+4547114 | Msa0098520:three_prime_UTR |
| TAGTCTATGGCTTACTGAGA+TGG | 0.527730 | 1_3:-4546989 | None:intergenic |
| GAACATGAAGGTCTTGGAGG+TGG | 0.528351 | 1_3:-4543903 | None:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | 1_3:+4543476 | Msa0098520:CDS |
| TTAGAACAGAACAACAATGT+TGG | 0.530895 | 1_3:-4541250 | None:intergenic |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | 1_3:-4543843 | None:intergenic |
| CCTTCATACTGAAACACTTG+TGG | 0.535452 | 1_3:-4541315 | None:intergenic |
| GAAGATTGTCTCCTATGAGT+TGG | 0.536595 | 1_3:-4541673 | None:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | 1_3:+4543427 | Msa0098520:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | 1_3:-4543518 | None:intergenic |
| GGCTTACTGAGATGGTAAGC+TGG | 0.541384 | 1_3:-4546981 | None:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | 1_3:+4544835 | Msa0098520:CDS |
| AAATTGTTAATCAAAATGGT+AGG | 0.543400 | 1_3:-4547262 | None:intergenic |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | 1_3:+4541947 | Msa0098520:CDS |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | 1_3:+4543522 | Msa0098520:CDS |
| AACAACAATGTTGGATTTGG+GGG | 0.549616 | 1_3:-4541241 | None:intergenic |
| TTGCTAGAAATAGAACATGA+AGG | 0.550243 | 1_3:-4543915 | None:intergenic |
| TTGAATGAGGTGGAACAAAA+GGG | 0.552966 | 1_3:-4541591 | None:intergenic |
| GGCTAAGTTGAATGCTGAGT+TGG | 0.555894 | 1_3:+4541759 | Msa0098520:CDS |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | 1_3:+4544517 | Msa0098520:CDS |
| ATAGAACATGAAGGTCTTGG+AGG | 0.559160 | 1_3:-4543906 | None:intergenic |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | 1_3:-4543996 | None:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | 1_3:+4543401 | Msa0098520:CDS |
| CATTCAAAACCAAGGTTATG+GGG | 0.561756 | 1_3:+4541451 | Msa0098520:CDS |
| TCCCTGTAGAATGGAACGTA+CGG | 0.561761 | 1_3:+4544989 | Msa0098520:intron |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | 1_3:+4546873 | Msa0098520:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | 1_3:+4546874 | Msa0098520:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | 1_3:+4544095 | Msa0098520:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | 1_3:-4544863 | None:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | 1_3:+4543812 | Msa0098520:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | 1_3:+4543863 | Msa0098520:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | 1_3:+4545012 | Msa0098520:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | 1_3:+4543686 | Msa0098520:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | 1_3:+4541879 | Msa0098520:CDS |
| AATTGTTAATCAAAATGGTA+GGG | 0.577822 | 1_3:-4547261 | None:intergenic |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | 1_3:+4541786 | Msa0098520:CDS |
| TACAACAACAATAACAACCT+CGG | 0.581296 | 1_3:+4541540 | Msa0098520:CDS |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | 1_3:+4543407 | Msa0098520:CDS |
| GAACAACAATGTTGGATTTG+GGG | 0.586269 | 1_3:-4541242 | None:intergenic |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | 1_3:-4543469 | None:intergenic |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | 1_3:+4544082 | Msa0098520:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | 1_3:-4541863 | None:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | 1_3:-4543993 | None:intergenic |
| ACAAGAGTCTAAGGAGAGAG+AGG | 0.592942 | 1_3:+4541738 | Msa0098520:CDS |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | 1_3:-4543343 | None:intergenic |
| CTGGTTAGTAACAACATCCG+AGG | 0.598131 | 1_3:-4541557 | None:intergenic |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | 1_3:+4544043 | Msa0098520:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | 1_3:+4545037 | Msa0098520:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | 1_3:+4544098 | Msa0098520:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | 1_3:-4543999 | None:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | 1_3:+4542041 | Msa0098520:CDS |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | 1_3:+4544019 | Msa0098520:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | 1_3:+4543404 | Msa0098520:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | 1_3:+4543428 | Msa0098520:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | 1_3:+4544846 | Msa0098520:CDS |
| TATATTAGATATAACTGGGG+GGG | 0.607492 | 1_3:+4547118 | Msa0098520:three_prime_UTR |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | 1_3:+4543326 | Msa0098520:CDS |
| ATGTGTGCACCCCATAACCT+TGG | 0.609951 | 1_3:-4541460 | None:intergenic |
| ATGCTGAGTTGGTTGAGTGT+AGG | 0.613954 | 1_3:+4541770 | Msa0098520:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | 1_3:-4544846 | None:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | 1_3:+4543687 | Msa0098520:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | 1_3:+4544500 | Msa0098520:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | 1_3:+4544486 | Msa0098520:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | 1_3:+4545088 | Msa0098520:CDS |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | 1_3:+4541891 | Msa0098520:CDS |
| TTGTATATTAGATATAACTG+GGG | 0.619257 | 1_3:+4547115 | Msa0098520:three_prime_UTR |
| TGTATATTAGATATAACTGG+GGG | 0.627219 | 1_3:+4547116 | Msa0098520:three_prime_UTR |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | 1_3:+4545547 | Msa0098520:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | 1_3:-4544872 | None:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | 1_3:+4541904 | Msa0098520:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | 1_3:-4544002 | None:intergenic |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | 1_3:-4544053 | None:intergenic |
| CTATGAGTTGGAAAAGCATG+TGG | 0.648114 | 1_3:-4541661 | None:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | 1_3:+4541874 | Msa0098520:CDS |
| ACAATAATCATTCAAAACCA+AGG | 0.650093 | 1_3:+4541443 | Msa0098520:CDS |
| AGAGTGAAAAGATCGTTGAT+GGG | 0.651953 | 1_3:+4541613 | Msa0098520:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | 1_3:+4541866 | Msa0098520:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | 1_3:+4544040 | Msa0098520:CDS |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | 1_3:+4545528 | Msa0098520:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | 1_3:-4545025 | None:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | 1_3:+4544459 | Msa0098520:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | 1_3:+4544418 | Msa0098520:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | 1_3:+4543555 | Msa0098520:CDS |
| CAGCAAGTAAATGTGACGAA+CGG | 0.689590 | 1_3:-4544181 | None:intergenic |
| GTATATTAGATATAACTGGG+GGG | 0.704956 | 1_3:+4547117 | Msa0098520:three_prime_UTR |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | 1_3:+4545013 | Msa0098520:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | 1_3:+4543734 | Msa0098520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAAATTATTTTTGTATA+TGG | + | chr1_3:4542223-4542242 | Msa0098520:intron | 10.0% |
| !! | AAAATATATAAATAAAGATG+GGG | - | chr1_3:4546016-4546035 | None:intergenic | 10.0% |
| !!! | TATATTTTAGTTTATTTTGA+TGG | + | chr1_3:4546542-4546561 | Msa0098520:intron | 10.0% |
| !! | TTATGAAAATAAGCTTAAAA+AGG | + | chr1_3:4542286-4542305 | Msa0098520:intron | 15.0% |
| !! | ATTCACCAATATAAATATAA+TGG | - | chr1_3:4544318-4544337 | None:intergenic | 15.0% |
| !! | ATTATATTTATATTGGTGAA+TGG | + | chr1_3:4544317-4544336 | Msa0098520:intron | 15.0% |
| !! | AGAAATAGATATTAATATTC+AGG | - | chr1_3:4544385-4544404 | None:intergenic | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | + | chr1_3:4544712-4544731 | Msa0098520:intron | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | + | chr1_3:4544811-4544830 | Msa0098520:CDS | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | - | chr1_3:4545232-4545251 | None:intergenic | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | + | chr1_3:4545233-4545252 | Msa0098520:intron | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | + | chr1_3:4545300-4545319 | Msa0098520:intron | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | + | chr1_3:4545442-4545461 | Msa0098520:intron | 15.0% |
| !! | AAATCCAAATTATTATACAA+GGG | + | chr1_3:4545873-4545892 | Msa0098520:intron | 15.0% |
| !! | CAAGAAAATAAAAAGAATTA+AGG | - | chr1_3:4546245-4546264 | None:intergenic | 15.0% |
| !!! | ACATAATATATTTTTCTTCA+TGG | - | chr1_3:4547227-4547246 | None:intergenic | 15.0% |
| !! | ATGAAGAAAAATATATTATG+TGG | + | chr1_3:4547226-4547245 | Msa0098520:three_prime_UTR | 15.0% |
| !!! | ATCAGAAAATTTTGAAACTT+TGG | - | chr1_3:4541374-4541393 | None:intergenic | 20.0% |
| !!! | TTTGAATGATTATTGTTGTT+GGG | - | chr1_3:4541439-4541458 | None:intergenic | 20.0% |
| !!! | TTTTGAATGATTATTGTTGT+TGG | - | chr1_3:4541440-4541459 | None:intergenic | 20.0% |
| !!! | GTATTTTGTTGTTTTTTTGT+CGG | - | chr1_3:4541523-4541542 | None:intergenic | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | + | chr1_3:4542102-4542121 | Msa0098520:intron | 20.0% |
| !! | GCTTATTTAAATTTACCTAT+TGG | - | chr1_3:4542625-4542644 | None:intergenic | 20.0% |
| !!! | TGTAGGAGTATTTTTTTTTA+AGG | - | chr1_3:4543006-4543025 | None:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | + | chr1_3:4543667-4543686 | Msa0098520:CDS | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | + | chr1_3:4543812-4543831 | Msa0098520:CDS | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | - | chr1_3:4544221-4544240 | None:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | - | chr1_3:4544231-4544250 | None:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | - | chr1_3:4544246-4544265 | None:intergenic | 20.0% |
| !! | TGAAGCCATTATATTTATAT+TGG | + | chr1_3:4544310-4544329 | Msa0098520:intron | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | - | chr1_3:4544346-4544365 | None:intergenic | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | + | chr1_3:4544399-4544418 | Msa0098520:intron | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | + | chr1_3:4544715-4544734 | Msa0098520:intron | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | - | chr1_3:4545216-4545235 | None:intergenic | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | + | chr1_3:4545412-4545431 | Msa0098520:intron | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | + | chr1_3:4545872-4545891 | Msa0098520:intron | 20.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | - | chr1_3:4545880-4545899 | None:intergenic | 20.0% |
| !!! | TTTTTTTATATACTGGAAAG+TGG | + | chr1_3:4546032-4546051 | Msa0098520:intron | 20.0% |
| !! | ATAATCTAAATATAGTCACA+AGG | - | chr1_3:4546154-4546173 | None:intergenic | 20.0% |
| !!! | AATTTTGAATGATCGATTTT+TGG | + | chr1_3:4546482-4546501 | Msa0098520:intron | 20.0% |
| !!! | ATTTTAGTTTATTTTGATGG+CGG | + | chr1_3:4546545-4546564 | Msa0098520:intron | 20.0% |
| !! | TGTTGTATATTAGATATAAC+TGG | + | chr1_3:4547113-4547132 | Msa0098520:three_prime_UTR | 20.0% |
| !! | GTTGTATATTAGATATAACT+GGG | + | chr1_3:4547114-4547133 | Msa0098520:three_prime_UTR | 20.0% |
| !! | TTGTATATTAGATATAACTG+GGG | + | chr1_3:4547115-4547134 | Msa0098520:three_prime_UTR | 20.0% |
| !! | AATTGTTAATCAAAATGGTA+GGG | - | chr1_3:4547264-4547283 | None:intergenic | 20.0% |
| !! | AAATTGTTAATCAAAATGGT+AGG | - | chr1_3:4547265-4547284 | None:intergenic | 20.0% |
| !!! | TACCATTTTGATTAACAATT+TGG | + | chr1_3:4547264-4547283 | Msa0098520:three_prime_UTR | 20.0% |
| ! | ACAATAATCATTCAAAACCA+AGG | + | chr1_3:4541443-4541462 | Msa0098520:CDS | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | + | chr1_3:4541835-4541854 | Msa0098520:CDS | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | + | chr1_3:4542078-4542097 | Msa0098520:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | + | chr1_3:4542079-4542098 | Msa0098520:intron | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | + | chr1_3:4542101-4542120 | Msa0098520:intron | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | + | chr1_3:4542133-4542152 | Msa0098520:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | + | chr1_3:4542134-4542153 | Msa0098520:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+GGG | + | chr1_3:4542158-4542177 | Msa0098520:intron | 25.0% |
| ! | TATAAGCTATAAGCTATATC+AGG | + | chr1_3:4542259-4542278 | Msa0098520:intron | 25.0% |
| ! | ATAAGCTATAAGCTATATCA+GGG | + | chr1_3:4542260-4542279 | Msa0098520:intron | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | - | chr1_3:4542560-4542579 | None:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | + | chr1_3:4542727-4542746 | Msa0098520:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | + | chr1_3:4542757-4542776 | Msa0098520:intron | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | + | chr1_3:4542758-4542777 | Msa0098520:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | + | chr1_3:4543088-4543107 | Msa0098520:intron | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | - | chr1_3:4543182-4543201 | None:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | - | chr1_3:4543290-4543309 | None:intergenic | 25.0% |
| ! | AAATGATCACTACTAGTTAT+TGG | - | chr1_3:4543624-4543643 | None:intergenic | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | + | chr1_3:4543683-4543702 | Msa0098520:CDS | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | + | chr1_3:4543818-4543837 | Msa0098520:CDS | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | + | chr1_3:4544447-4544466 | Msa0098520:CDS | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | - | chr1_3:4544623-4544642 | None:intergenic | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | - | chr1_3:4544629-4544648 | None:intergenic | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | + | chr1_3:4544877-4544896 | Msa0098520:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | + | chr1_3:4545083-4545102 | Msa0098520:CDS | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | - | chr1_3:4545275-4545294 | None:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | + | chr1_3:4545386-4545405 | Msa0098520:intron | 25.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | + | chr1_3:4545456-4545475 | Msa0098520:CDS | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | + | chr1_3:4545476-4545495 | Msa0098520:CDS | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | + | chr1_3:4545477-4545496 | Msa0098520:CDS | 25.0% |
| ! | GATACTGAAGTATATTATGT+GGG | - | chr1_3:4545607-4545626 | None:intergenic | 25.0% |
| ! | AGATACTGAAGTATATTATG+TGG | - | chr1_3:4545608-4545627 | None:intergenic | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | - | chr1_3:4545780-4545799 | None:intergenic | 25.0% |
| ! | ATATATAAATAAAGATGGGG+TGG | - | chr1_3:4546013-4546032 | None:intergenic | 25.0% |
| !!! | CCTTCTATATTTTAGTTTCA+GGG | - | chr1_3:4546205-4546224 | None:intergenic | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | - | chr1_3:4546617-4546636 | None:intergenic | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | - | chr1_3:4546634-4546653 | None:intergenic | 25.0% |
| !! | GATTGCATTACATTTTTCAT+AGG | + | chr1_3:4547013-4547032 | Msa0098520:three_prime_UTR | 25.0% |
| !!! | GATTGGATTAGTTTTGTATT+TGG | + | chr1_3:4547045-4547064 | Msa0098520:three_prime_UTR | 25.0% |
| ! | TGTATATTAGATATAACTGG+GGG | + | chr1_3:4547116-4547135 | Msa0098520:three_prime_UTR | 25.0% |
| ! | AGCCAAATTGTTAATCAAAA+TGG | - | chr1_3:4547269-4547288 | None:intergenic | 25.0% |
| !! | ATTGATGATGATGATGTAAG+AGG | - | chr1_3:4541214-4541233 | None:intergenic | 30.0% |
| AGAACAACAATGTTGGATTT+GGG | - | chr1_3:4541246-4541265 | None:intergenic | 30.0% | |
| TTAGAACAGAACAACAATGT+TGG | - | chr1_3:4541253-4541272 | None:intergenic | 30.0% | |
| !! | CAGTGTTTTTGAGAAGTTTA+AGG | - | chr1_3:4541293-4541312 | None:intergenic | 30.0% |
| !!! | CTTTGGTCTTATTTTCTGAT+GGG | - | chr1_3:4541357-4541376 | None:intergenic | 30.0% |
| !!! | ACTTTGGTCTTATTTTCTGA+TGG | - | chr1_3:4541358-4541377 | None:intergenic | 30.0% |
| !!! | GTTTTTGTTGTTTGAAGCTT+TGG | - | chr1_3:4541409-4541428 | None:intergenic | 30.0% |
| ATCATTCAAAACCAAGGTTA+TGG | + | chr1_3:4541449-4541468 | Msa0098520:CDS | 30.0% | |
| TCATTCAAAACCAAGGTTAT+GGG | + | chr1_3:4541450-4541469 | Msa0098520:CDS | 30.0% | |
| !!! | TTGTTTTTTTGTCGGAAGTT+TGG | - | chr1_3:4541515-4541534 | None:intergenic | 30.0% |
| TACAACAACAATAACAACCT+CGG | + | chr1_3:4541540-4541559 | Msa0098520:CDS | 30.0% | |
| !! | ATCTTCAACTGATTTGTTCA+CGG | + | chr1_3:4541690-4541709 | Msa0098520:CDS | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | + | chr1_3:4542058-4542077 | Msa0098520:intron | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | + | chr1_3:4542109-4542128 | Msa0098520:intron | 30.0% |
| ! | CTTTGTTTGGATAAACAACT+TGG | + | chr1_3:4542157-4542176 | Msa0098520:intron | 30.0% |
| TTGTTTGGATAAACAACTTG+GGG | + | chr1_3:4542159-4542178 | Msa0098520:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr1_3:4542185-4542204 | None:intergenic | 30.0% | |
| TGTTAGAGAGCTTATGAAAA+CGG | - | chr1_3:4542333-4542352 | None:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | - | chr1_3:4542595-4542614 | None:intergenic | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | - | chr1_3:4542724-4542743 | None:intergenic | 30.0% |
| TATGCAAATTAGAATAGAGG+AGG | + | chr1_3:4542730-4542749 | Msa0098520:intron | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | - | chr1_3:4543023-4543042 | None:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | + | chr1_3:4543022-4543041 | Msa0098520:intron | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | - | chr1_3:4543472-4543491 | None:intergenic | 30.0% | |
| AAAGAATACATGCTCAACAT+TGG | + | chr1_3:4543476-4543495 | Msa0098520:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | + | chr1_3:4543578-4543597 | Msa0098520:CDS | 30.0% | |
| AGAAGAAGACATTCAATTAG+TGG | + | chr1_3:4543717-4543736 | Msa0098520:CDS | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | - | chr1_3:4543852-4543871 | None:intergenic | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | + | chr1_3:4543854-4543873 | Msa0098520:CDS | 30.0% | |
| TTGCTAGAAATAGAACATGA+AGG | - | chr1_3:4543918-4543937 | None:intergenic | 30.0% | |
| ACCAAAATATTGCATTCACA+TGG | + | chr1_3:4544279-4544298 | Msa0098520:intron | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | - | chr1_3:4544369-4544388 | None:intergenic | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | - | chr1_3:4544546-4544565 | None:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | - | chr1_3:4544591-4544610 | None:intergenic | 30.0% | |
| ! | TTATTTCTTAGGTGGATGAA+AGG | + | chr1_3:4544723-4544742 | Msa0098520:intron | 30.0% |
| TATTTCTTAGGTGGATGAAA+GGG | + | chr1_3:4544724-4544743 | Msa0098520:intron | 30.0% | |
| !! | TTCTTTAGAGCAATATCACA+AGG | - | chr1_3:4544875-4544894 | None:intergenic | 30.0% |
| AGTTTCAAATTCCTGTAGAA+TGG | + | chr1_3:4545060-4545079 | Msa0098520:CDS | 30.0% | |
| !! | TGATAATGGAATTATTGGCA+AGG | + | chr1_3:4545088-4545107 | Msa0098520:CDS | 30.0% |
| ATTGGCAAGGTATACTATAA+TGG | + | chr1_3:4545101-4545120 | Msa0098520:intron | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | + | chr1_3:4545310-4545329 | Msa0098520:intron | 30.0% | |
| !!! | TTTTTGAAGTTCCTAGAAGA+CGG | - | chr1_3:4545354-4545373 | None:intergenic | 30.0% |
| ! | TGACTTTGTTTGAACTTCAA+TGG | - | chr1_3:4545506-4545525 | None:intergenic | 30.0% |
| ! | GAAGAAACATCGATTAACAA+TGG | - | chr1_3:4545657-4545676 | None:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | - | chr1_3:4545772-4545791 | None:intergenic | 30.0% |
| !!! | ATTGAGTTGATTCTTTTCAC+TGG | + | chr1_3:4545955-4545974 | Msa0098520:intron | 30.0% |
| ATAGAAAATAGCATCAGCTA+GGG | - | chr1_3:4546072-4546091 | None:intergenic | 30.0% | |
| AATAGAAAATAGCATCAGCT+AGG | - | chr1_3:4546073-4546092 | None:intergenic | 30.0% | |
| GGAGGAAATACAAAGAATTA+AGG | - | chr1_3:4546184-4546203 | None:intergenic | 30.0% | |
| !!! | TCTATATTTTAGTTTCAGGG+AGG | - | chr1_3:4546202-4546221 | None:intergenic | 30.0% |
| CCCTGAAACTAAAATATAGA+AGG | + | chr1_3:4546202-4546221 | Msa0098520:intron | 30.0% | |
| !!! | GCCTTCTATATTTTAGTTTC+AGG | - | chr1_3:4546206-4546225 | None:intergenic | 30.0% |
| ! | TCTTGCAAATTCTTTCTAGT+AGG | + | chr1_3:4546357-4546376 | Msa0098520:intron | 30.0% |
| ! | CTTGCAAATTCTTTCTAGTA+GGG | + | chr1_3:4546358-4546377 | Msa0098520:intron | 30.0% |
| AGCTTATGATGAGTCAAAAA+AGG | + | chr1_3:4546439-4546458 | Msa0098520:intron | 30.0% | |
| TTTGGTTAGAAAAGAATCAG+TGG | - | chr1_3:4546599-4546618 | None:intergenic | 30.0% | |
| TGATTCTTCTTGATGCAATT+TGG | - | chr1_3:4546677-4546696 | None:intergenic | 30.0% | |
| !!! | AGTCGCAGTTTAGTTTTTTT+TGG | + | chr1_3:4546728-4546747 | Msa0098520:intron | 30.0% |
| !!! | CAGTTTAGTTTTTTTTGGTG+CGG | + | chr1_3:4546733-4546752 | Msa0098520:intron | 30.0% |
| ! | GATTCAGGAATTTTATGTTG+TGG | - | chr1_3:4546806-4546825 | None:intergenic | 30.0% |
| TTAGTAACAAAGACAGATTC+AGG | - | chr1_3:4546821-4546840 | None:intergenic | 30.0% | |
| ! | TATTTGTTAATGCAGTTTGC+AGG | + | chr1_3:4546870-4546889 | Msa0098520:intron | 30.0% |
| TGTAATGCAATCATAGTCTA+TGG | - | chr1_3:4547005-4547024 | None:intergenic | 30.0% | |
| ! | TCTATGATTGCACTACATTT+TGG | + | chr1_3:4547068-4547087 | Msa0098520:three_prime_UTR | 30.0% |
| GTATATTAGATATAACTGGG+GGG | + | chr1_3:4547117-4547136 | Msa0098520:three_prime_UTR | 30.0% | |
| TATATTAGATATAACTGGGG+GGG | + | chr1_3:4547118-4547137 | Msa0098520:three_prime_UTR | 30.0% | |
| !!! | GTAAGAGGTTTTTTCTGTGT+GGG | - | chr1_3:4541199-4541218 | None:intergenic | 35.0% |
| !!! | TGTAAGAGGTTTTTTCTGTG+TGG | - | chr1_3:4541200-4541219 | None:intergenic | 35.0% |
| AACAACAATGTTGGATTTGG+GGG | - | chr1_3:4541244-4541263 | None:intergenic | 35.0% | |
| GAACAACAATGTTGGATTTG+GGG | - | chr1_3:4541245-4541264 | None:intergenic | 35.0% | |
| CAGAACAACAATGTTGGATT+TGG | - | chr1_3:4541247-4541266 | None:intergenic | 35.0% | |
| !! | TTTGTTGTTTGAAGCTTTGG+TGG | - | chr1_3:4541406-4541425 | None:intergenic | 35.0% |
| CATTCAAAACCAAGGTTATG+GGG | + | chr1_3:4541451-4541470 | Msa0098520:CDS | 35.0% | |
| ! | CAAAAGGGTTAACGTTTTTC+TGG | - | chr1_3:4541579-4541598 | None:intergenic | 35.0% |
| TTGAATGAGGTGGAACAAAA+GGG | - | chr1_3:4541594-4541613 | None:intergenic | 35.0% | |
| ! | GATCTTTTCACTCTTGAATG+AGG | - | chr1_3:4541607-4541626 | None:intergenic | 35.0% |
| AAGAGTGAAAAGATCGTTGA+TGG | + | chr1_3:4541612-4541631 | Msa0098520:CDS | 35.0% | |
| AGAGTGAAAAGATCGTTGAT+GGG | + | chr1_3:4541613-4541632 | Msa0098520:CDS | 35.0% | |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | + | chr1_3:4541729-4541748 | Msa0098520:CDS | 35.0% |
| AGAAAAGGAACCTTACTTGT+AGG | + | chr1_3:4541992-4542011 | Msa0098520:CDS | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | - | chr1_3:4542005-4542024 | None:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | + | chr1_3:4542005-4542024 | Msa0098520:CDS | 35.0% | |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | + | chr1_3:4542041-4542060 | Msa0098520:CDS | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | + | chr1_3:4542144-4542163 | Msa0098520:intron | 35.0% |
| GGCTTATTTGAGCTTATCTA+CGG | - | chr1_3:4542374-4542393 | None:intergenic | 35.0% | |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | - | chr1_3:4542584-4542603 | None:intergenic | 35.0% |
| TCCGAAACTAATAATCTCAC+AGG | + | chr1_3:4542591-4542610 | Msa0098520:intron | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | + | chr1_3:4542703-4542722 | Msa0098520:intron | 35.0% | |
| ! | GCTAGAAGTTGATCAAAACT+GGG | - | chr1_3:4542944-4542963 | None:intergenic | 35.0% |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | - | chr1_3:4542945-4542964 | None:intergenic | 35.0% |
| ACAAACGAGCAGATTAAATG+AGG | + | chr1_3:4543401-4543420 | Msa0098520:CDS | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | + | chr1_3:4543555-4543574 | Msa0098520:CDS | 35.0% | |
| !!! | CTAGTTATTGGCCACTTTTT+CGG | - | chr1_3:4543612-4543631 | None:intergenic | 35.0% |
| TGTTGAACAAATAACGGCAT+TGG | - | chr1_3:4543846-4543865 | None:intergenic | 35.0% | |
| GAAATAGAACATGAAGGTCT+TGG | - | chr1_3:4543912-4543931 | None:intergenic | 35.0% | |
| ! | TTTTGCATCTAGAGGTAACA+CGG | + | chr1_3:4544013-4544032 | Msa0098520:CDS | 35.0% |
| AATCTCTCTTCATGAGTGAA+TGG | - | chr1_3:4544076-4544095 | None:intergenic | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | + | chr1_3:4544081-4544100 | Msa0098520:CDS | 35.0% | |
| ! | CATGAAGAGAGATTCTAGAA+GGG | + | chr1_3:4544082-4544101 | Msa0098520:CDS | 35.0% |
| ! | GCCATGTGAATGCAATATTT+TGG | - | chr1_3:4544283-4544302 | None:intergenic | 35.0% |
| AAGGCAGATATTGAAACACA+AGG | + | chr1_3:4544418-4544437 | Msa0098520:CDS | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | + | chr1_3:4544486-4544505 | Msa0098520:CDS | 35.0% | |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | + | chr1_3:4544747-4544766 | Msa0098520:CDS | 35.0% |
| ACATTAAGAGAAGCAGCATT+TGG | + | chr1_3:4544788-4544807 | Msa0098520:CDS | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | + | chr1_3:4545037-4545056 | Msa0098520:CDS | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | - | chr1_3:4545074-4545093 | None:intergenic | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | + | chr1_3:4545074-4545093 | Msa0098520:CDS | 35.0% | |
| !! | TGGCATTGATGAATATGTGA+AGG | + | chr1_3:4545121-4545140 | Msa0098520:intron | 35.0% |
| ATTTGACAAAGATCCTGCAA+TGG | + | chr1_3:4545528-4545547 | Msa0098520:CDS | 35.0% | |
| !! | AGATCCTGCAATGGATTATA+TGG | + | chr1_3:4545537-4545556 | Msa0098520:CDS | 35.0% |
| AGAACCATATAATCCATTGC+AGG | - | chr1_3:4545544-4545563 | None:intergenic | 35.0% | |
| ! | ATGGATTATATGGTTCTCCA+AGG | + | chr1_3:4545547-4545566 | Msa0098520:CDS | 35.0% |
| ATTTGCTTTCAGAATCCATC+AGG | + | chr1_3:4545576-4545595 | Msa0098520:CDS | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | - | chr1_3:4545594-4545613 | None:intergenic | 35.0% | |
| !! | CTTTGTCCATGCTTTTAAGT+TGG | + | chr1_3:4545626-4545645 | Msa0098520:intron | 35.0% |
| ! | GAAACATCGATTAACAATGG+AGG | - | chr1_3:4545654-4545673 | None:intergenic | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | + | chr1_3:4545794-4545813 | Msa0098520:intron | 35.0% |
| TAATAATGTAGATCTGCCCT+TGG | - | chr1_3:4545813-4545832 | None:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | + | chr1_3:4545814-4545833 | Msa0098520:intron | 35.0% | |
| ACCTACGATTGTTCATGAAT+CGG | + | chr1_3:4545847-4545866 | Msa0098520:intron | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | + | chr1_3:4545915-4545934 | Msa0098520:intron | 35.0% | |
| TATAAATAAAGATGGGGTGG+CGG | - | chr1_3:4546010-4546029 | None:intergenic | 35.0% | |
| ATAAACCAATATAGCGCAGA+GGG | - | chr1_3:4546106-4546125 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTTTTTGGTGCGGT+TGG | + | chr1_3:4546737-4546756 | Msa0098520:intron | 35.0% |
| ! | AGGAATTTTATGTTGTGGCT+AGG | - | chr1_3:4546801-4546820 | None:intergenic | 35.0% |
| AGAAACAATGCATGCATTTG+AGG | + | chr1_3:4546905-4546924 | Msa0098520:CDS | 35.0% | |
| ! | CATTTTTCATAGGTGCAATC+TGG | + | chr1_3:4547023-4547042 | Msa0098520:three_prime_UTR | 35.0% |
| CCTTCATACTGAAACACTTG+TGG | - | chr1_3:4541318-4541337 | None:intergenic | 40.0% | |
| CCACAAGTGTTTCAGTATGA+AGG | + | chr1_3:4541315-4541334 | Msa0098520:exon | 40.0% | |
| CTTGAATGAGGTGGAACAAA+AGG | - | chr1_3:4541595-4541614 | None:intergenic | 40.0% | |
| ! | CTTTTCACTCTTGAATGAGG+TGG | - | chr1_3:4541604-4541623 | None:intergenic | 40.0% |
| ! | CTATGAGTTGGAAAAGCATG+TGG | - | chr1_3:4541664-4541683 | None:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACTCAT+AGG | + | chr1_3:4541662-4541681 | Msa0098520:CDS | 40.0% |
| GAAGATTGTCTCCTATGAGT+TGG | - | chr1_3:4541676-4541695 | None:intergenic | 40.0% | |
| !! | AACTGATTTGTTCACGGAGT+TGG | + | chr1_3:4541696-4541715 | Msa0098520:CDS | 40.0% |
| AAATGGCTTATCCGAGCAAT+TGG | + | chr1_3:4541852-4541871 | Msa0098520:CDS | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | - | chr1_3:4541866-4541885 | None:intergenic | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | + | chr1_3:4541866-4541885 | Msa0098520:CDS | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | + | chr1_3:4541900-4541919 | Msa0098520:CDS | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | + | chr1_3:4541904-4541923 | Msa0098520:CDS | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | + | chr1_3:4541947-4541966 | Msa0098520:CDS | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | + | chr1_3:4541957-4541976 | Msa0098520:CDS | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | + | chr1_3:4541977-4541996 | Msa0098520:CDS | 40.0% | |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | + | chr1_3:4542114-4542133 | Msa0098520:intron | 40.0% |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | - | chr1_3:4542400-4542419 | None:intergenic | 40.0% |
| ATAAGCGTGCACTTGATCAA+GGG | - | chr1_3:4542415-4542434 | None:intergenic | 40.0% | |
| TATAAGCGTGCACTTGATCA+AGG | - | chr1_3:4542416-4542435 | None:intergenic | 40.0% | |
| TTTCGGAGAGCTTATGGAAA+AGG | - | chr1_3:4542578-4542597 | None:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | + | chr1_3:4542607-4542626 | Msa0098520:intron | 40.0% | |
| AGCTAATCCAAACAATTCCG+AGG | + | chr1_3:4542642-4542661 | Msa0098520:intron | 40.0% | |
| ! | TCCACACTGCCATTTAACTT+AGG | + | chr1_3:4543170-4543189 | Msa0098520:intron | 40.0% |
| ACCTAAGTTAAATGGCAGTG+TGG | - | chr1_3:4543174-4543193 | None:intergenic | 40.0% | |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | + | chr1_3:4543326-4543345 | Msa0098520:CDS | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | - | chr1_3:4543334-4543353 | None:intergenic | 40.0% |
| AACCTTCTACTTGTTTGCTC+AGG | - | chr1_3:4543380-4543399 | None:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | + | chr1_3:4543404-4543423 | Msa0098520:CDS | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | - | chr1_3:4543439-4543458 | None:intergenic | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | - | chr1_3:4543521-4543540 | None:intergenic | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | + | chr1_3:4543598-4543617 | Msa0098520:CDS | 40.0% | |
| ! | TTGGATTGAATCGATTTCGG+AGG | + | chr1_3:4543686-4543705 | Msa0098520:CDS | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | + | chr1_3:4543687-4543706 | Msa0098520:CDS | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | + | chr1_3:4543734-4543753 | Msa0098520:CDS | 40.0% |
| TTCTAATAGCTCAGAGGAAG+AGG | + | chr1_3:4543740-4543759 | Msa0098520:CDS | 40.0% | |
| !! | AACAATGTGCTTTGGAGAAG+AGG | + | chr1_3:4543862-4543881 | Msa0098520:CDS | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | + | chr1_3:4543863-4543882 | Msa0098520:CDS | 40.0% |
| ATAGAACATGAAGGTCTTGG+AGG | - | chr1_3:4543909-4543928 | None:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | - | chr1_3:4544005-4544024 | None:intergenic | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | - | chr1_3:4544008-4544027 | None:intergenic | 40.0% | |
| ! | CCTATGAGTTTTGCATCTAG+AGG | + | chr1_3:4544005-4544024 | Msa0098520:CDS | 40.0% |
| TCTAGAAGGGATTCTTCAAG+TGG | + | chr1_3:4544095-4544114 | Msa0098520:CDS | 40.0% | |
| CAGCAAGTAAATGTGACGAA+CGG | - | chr1_3:4544184-4544203 | None:intergenic | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | + | chr1_3:4544500-4544519 | Msa0098520:CDS | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | - | chr1_3:4544754-4544773 | None:intergenic | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | - | chr1_3:4544773-4544792 | None:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | + | chr1_3:4544835-4544854 | Msa0098520:CDS | 40.0% | |
| GTTTGTGTTTCCCTGTAGAA+TGG | + | chr1_3:4544980-4544999 | Msa0098520:intron | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | + | chr1_3:4545165-4545184 | Msa0098520:intron | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | - | chr1_3:4545567-4545586 | None:intergenic | 40.0% | |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | - | chr1_3:4545757-4545776 | None:intergenic | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | + | chr1_3:4545793-4545812 | Msa0098520:intron | 40.0% |
| TTCATGAACAATCGTAGGTG+AGG | - | chr1_3:4545846-4545865 | None:intergenic | 40.0% | |
| ! | ACCGATTCATGAACAATCGT+AGG | - | chr1_3:4545851-4545870 | None:intergenic | 40.0% |
| ACTGAACCATGAACAATCCT+AGG | - | chr1_3:4545909-4545928 | None:intergenic | 40.0% | |
| !! | GAGTTGATTCTTTTCACTGG+CGG | + | chr1_3:4545958-4545977 | Msa0098520:intron | 40.0% |
| TGGAAAGTGGATGCTGAAAA+AGG | + | chr1_3:4546045-4546064 | Msa0098520:intron | 40.0% | |
| GATAAACCAATATAGCGCAG+AGG | - | chr1_3:4546107-4546126 | None:intergenic | 40.0% | |
| GAGCCAGACAAAAAAGTTTG+GGG | - | chr1_3:4546574-4546593 | None:intergenic | 40.0% | |
| GGAGCCAGACAAAAAAGTTT+GGG | - | chr1_3:4546575-4546594 | None:intergenic | 40.0% | |
| GGTTAGAAAAGAATCAGTGG+CGG | - | chr1_3:4546596-4546615 | None:intergenic | 40.0% | |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | + | chr1_3:4546745-4546764 | Msa0098520:intron | 40.0% |
| TTGTTAATGCAGTTTGCAGG+AGG | + | chr1_3:4546873-4546892 | Msa0098520:intron | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | + | chr1_3:4546874-4546893 | Msa0098520:intron | 40.0% | |
| TAGTCTATGGCTTACTGAGA+TGG | - | chr1_3:4546992-4547011 | None:intergenic | 40.0% | |
| TTCATAGGTGCAATCTGGAT+TGG | + | chr1_3:4547028-4547047 | Msa0098520:three_prime_UTR | 40.0% | |
| !! | ACATTTTGGTCGCAAGAGAT+TGG | + | chr1_3:4547082-4547101 | Msa0098520:three_prime_UTR | 40.0% |
| TGGGGTGCACACATTGTAAA+AGG | + | chr1_3:4541469-4541488 | Msa0098520:CDS | 45.0% | |
| CTGGTTAGTAACAACATCCG+AGG | - | chr1_3:4541560-4541579 | None:intergenic | 45.0% | |
| ! | GGGTGATTTGTCATGTTCTC+AGG | + | chr1_3:4541633-4541652 | Msa0098520:CDS | 45.0% |
| ACAAGAGTCTAAGGAGAGAG+AGG | + | chr1_3:4541738-4541757 | Msa0098520:CDS | 45.0% | |
| ! | GGCTAAGTTGAATGCTGAGT+TGG | + | chr1_3:4541759-4541778 | Msa0098520:CDS | 45.0% |
| !! | ATGCTGAGTTGGTTGAGTGT+AGG | + | chr1_3:4541770-4541789 | Msa0098520:CDS | 45.0% |
| GTGTAGGAAGAATCAGAGTG+AGG | + | chr1_3:4541786-4541805 | Msa0098520:CDS | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | + | chr1_3:4541879-4541898 | Msa0098520:CDS | 45.0% | |
| !! | CTGTGGATTGGAAAGACAAG+AGG | + | chr1_3:4541891-4541910 | Msa0098520:CDS | 45.0% |
| TAAACAACTTGGGGCCTGTT+TGG | + | chr1_3:4542168-4542187 | Msa0098520:intron | 45.0% | |
| ! | GGGCATGTTTGGAATTGGAT+TGG | - | chr1_3:4542395-4542414 | None:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | - | chr1_3:4542406-4542425 | None:intergenic | 45.0% |
| ! | AAGCTTTATCCCACTGAGTG+GGG | - | chr1_3:4542677-4542696 | None:intergenic | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | - | chr1_3:4542678-4542697 | None:intergenic | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | + | chr1_3:4542950-4542969 | Msa0098520:intron | 45.0% |
| GACCTGAGCAAACAAGTAGA+AGG | + | chr1_3:4543375-4543394 | Msa0098520:CDS | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | + | chr1_3:4543407-4543426 | Msa0098520:CDS | 45.0% | |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | + | chr1_3:4543427-4543446 | Msa0098520:CDS | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | + | chr1_3:4543428-4543447 | Msa0098520:CDS | 45.0% |
| CTGCTACTCACAACAGATTG+AGG | - | chr1_3:4543522-4543541 | None:intergenic | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | + | chr1_3:4543522-4543541 | Msa0098520:CDS | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | - | chr1_3:4544002-4544021 | None:intergenic | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | + | chr1_3:4544098-4544117 | Msa0098520:CDS | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | - | chr1_3:4544137-4544156 | None:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | + | chr1_3:4544146-4544165 | Msa0098520:CDS | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | + | chr1_3:4544459-4544478 | Msa0098520:CDS | 45.0% | |
| AAGTGGCTCGATGATGAACT+TGG | + | chr1_3:4544517-4544536 | Msa0098520:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | - | chr1_3:4544866-4544885 | None:intergenic | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | - | chr1_3:4544867-4544886 | None:intergenic | 45.0% | |
| TCCCTGTAGAATGGAACGTA+CGG | + | chr1_3:4544989-4545008 | Msa0098520:intron | 45.0% | |
| ACCGTACGTTCCATTCTACA+GGG | - | chr1_3:4544993-4545012 | None:intergenic | 45.0% | |
| AACCGTACGTTCCATTCTAC+AGG | - | chr1_3:4544994-4545013 | None:intergenic | 45.0% | |
| GTATCCTATGACCGTCTTCT+AGG | + | chr1_3:4545340-4545359 | Msa0098520:intron | 45.0% | |
| AGTTCCTAGAAGACGGTCAT+AGG | - | chr1_3:4545347-4545366 | None:intergenic | 45.0% | |
| ! | GAGGCACCAACTTAAAAGCA+TGG | - | chr1_3:4545635-4545654 | None:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | - | chr1_3:4545752-4545771 | None:intergenic | 45.0% |
| GCCCTTGGTCAATACTCAAT+AGG | - | chr1_3:4545798-4545817 | None:intergenic | 45.0% | |
| ! | ATTCTTTTCACTGGCGGAAC+TGG | + | chr1_3:4545964-4545983 | Msa0098520:intron | 45.0% |
| ! | TTCTTTTCACTGGCGGAACT+GGG | + | chr1_3:4545965-4545984 | Msa0098520:intron | 45.0% |
| CCAGACAAAAAAGTTTGGGG+TGG | - | chr1_3:4546571-4546590 | None:intergenic | 45.0% | |
| !!! | CCACCCCAAACTTTTTTGTC+TGG | + | chr1_3:4546568-4546587 | Msa0098520:intron | 45.0% |
| CGGAGCCAGACAAAAAAGTT+TGG | - | chr1_3:4546576-4546595 | None:intergenic | 45.0% | |
| !!! | ATATAACTGGGGGGGCATTT+TGG | + | chr1_3:4547126-4547145 | Msa0098520:three_prime_UTR | 45.0% |
| !!! | TATAACTGGGGGGGCATTTT+GGG | + | chr1_3:4547127-4547146 | Msa0098520:three_prime_UTR | 45.0% |
| !! | TTAAAAAAAAATATGAAAAA+AGG | + | chr1_3:4543050-4543069 | Msa0098520:intron | 5.0% |
| !! | TAAAAAAAAATATGAAAAAA+GGG | + | chr1_3:4543051-4543070 | Msa0098520:intron | 5.0% |
| !! | AAAAATATATAAATAAAGAT+GGG | - | chr1_3:4546017-4546036 | None:intergenic | 5.0% |
| !! | AAAAAATATATAAATAAAGA+TGG | - | chr1_3:4546018-4546037 | None:intergenic | 5.0% |
| !!! | TTATATATTTTTTTATATAC+TGG | + | chr1_3:4546025-4546044 | Msa0098520:intron | 5.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | - | chr1_3:4546654-4546673 | None:intergenic | 5.0% |
| ATGTGTGCACCCCATAACCT+TGG | - | chr1_3:4541463-4541482 | None:intergenic | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | + | chr1_3:4541874-4541893 | Msa0098520:CDS | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | - | chr1_3:4542652-4542671 | None:intergenic | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | - | chr1_3:4542673-4542692 | None:intergenic | 50.0% | |
| ! | CCAAGCTTTATCCCACTGAG+TGG | - | chr1_3:4542679-4542698 | None:intergenic | 50.0% |
| CCACTCAGTGGGATAAAGCT+TGG | + | chr1_3:4542676-4542695 | Msa0098520:intron | 50.0% | |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | + | chr1_3:4543871-4543890 | Msa0098520:CDS | 50.0% |
| ! | GAAGGTCTTGGAGGTGGATT+AGG | - | chr1_3:4543900-4543919 | None:intergenic | 50.0% |
| GAACATGAAGGTCTTGGAGG+TGG | - | chr1_3:4543906-4543925 | None:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | - | chr1_3:4543996-4544015 | None:intergenic | 50.0% |
| GCAAAACTCATAGGAGGTGG+TGG | - | chr1_3:4543999-4544018 | None:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | + | chr1_3:4544019-4544038 | Msa0098520:CDS | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | + | chr1_3:4544040-4544059 | Msa0098520:CDS | 50.0% | |
| AAAACGAGCACCACAAGTGG+TGG | + | chr1_3:4544043-4544062 | Msa0098520:CDS | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | - | chr1_3:4544056-4544075 | None:intergenic | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | - | chr1_3:4544852-4544871 | None:intergenic | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | + | chr1_3:4545012-4545031 | Msa0098520:CDS | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | + | chr1_3:4545013-4545032 | Msa0098520:CDS | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | - | chr1_3:4545028-4545047 | None:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | + | chr1_3:4545730-4545749 | Msa0098520:intron | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | - | chr1_3:4545739-4545758 | None:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | - | chr1_3:4545904-4545923 | None:intergenic | 50.0% | |
| ! | TCTTTTCACTGGCGGAACTG+GGG | + | chr1_3:4545966-4545985 | Msa0098520:intron | 50.0% |
| ! | AAATAAAGATGGGGTGGCGG+TGG | - | chr1_3:4546007-4546026 | None:intergenic | 50.0% |
| TGCTTCCCTCTGCGCTATAT+TGG | + | chr1_3:4546098-4546117 | Msa0098520:intron | 50.0% | |
| GGCTTACTGAGATGGTAAGC+TGG | - | chr1_3:4546984-4547003 | None:intergenic | 50.0% | |
| AAGCCTGAGCAGTGATGCCT+CGG | - | chr1_3:4543346-4543365 | None:intergenic | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | - | chr1_3:4544849-4544868 | None:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | + | chr1_3:4544846-4544865 | Msa0098520:CDS | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | + | chr1_3:4545889-4545908 | Msa0098520:intron | 55.0% |
| GCCTCGCCTAGGATTGTTCA+TGG | + | chr1_3:4545900-4545919 | Msa0098520:intron | 55.0% | |
| ! | CTTTTCACTGGCGGAACTGG+GGG | + | chr1_3:4545967-4545986 | Msa0098520:intron | 55.0% |
| ! | TTTTCACTGGCGGAACTGGG+GGG | + | chr1_3:4545968-4545987 | Msa0098520:intron | 55.0% |
| TGTAGCCGACCCCACTCAGT+GGG | + | chr1_3:4542665-4542684 | Msa0098520:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | + | chr1_3:4543340-4543359 | Msa0098520:CDS | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | - | chr1_3:4542662-4542681 | None:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | + | chr1_3:4542664-4542683 | Msa0098520:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | - | chr1_3:4543990-4544009 | None:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | - | chr1_3:4543993-4544012 | None:intergenic | 65.0% |
| TCACTGGCGGAACTGGGGGG+TGG | + | chr1_3:4545971-4545990 | Msa0098520:intron | 70.0% | |
| GCGGAACTGGGGGGTGGCAA+GGG | + | chr1_3:4545977-4545996 | Msa0098520:intron | 70.0% | |
| CGGAACTGGGGGGTGGCAAG+GGG | + | chr1_3:4545978-4545997 | Msa0098520:intron | 70.0% | |
| GGAACTGGGGGGTGGCAAGG+GGG | + | chr1_3:4545979-4545998 | Msa0098520:intron | 70.0% | |
| GGCGGAGGTGGAGGTGGAGG+AGG | - | chr1_3:4543978-4543997 | None:intergenic | 75.0% | |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | - | chr1_3:4543981-4544000 | None:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | - | chr1_3:4543984-4544003 | None:intergenic | 75.0% |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | - | chr1_3:4543987-4544006 | None:intergenic | 75.0% |
| GGCGGAACTGGGGGGTGGCA+AGG | + | chr1_3:4545976-4545995 | Msa0098520:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4541175 | 4547290 | 4541175 | ID=Msa0098520;Name=Msa0098520 |
| chr1_3 | mRNA | 4541175 | 4547290 | 4541175 | ID=Msa0098520-mRNA-1;Parent=Msa0098520;Name=Msa0098520-mRNA-1;_AED=0.04;_eAED=0.04;_QI=156|1|1|1|1|1|7|325|755 |
| chr1_3 | exon | 4541175 | 4542062 | 4541175 | ID=Msa0098520-mRNA-1:exon:1528;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4543318 | 4544202 | 4543318 | ID=Msa0098520-mRNA-1:exon:1529;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4544415 | 4544546 | 4544415 | ID=Msa0098520-mRNA-1:exon:1530;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4544734 | 4544915 | 4544734 | ID=Msa0098520-mRNA-1:exon:1531;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4544998 | 4545109 | 4544998 | ID=Msa0098520-mRNA-1:exon:1532;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4545454 | 4545597 | 4545454 | ID=Msa0098520-mRNA-1:exon:1533;Parent=Msa0098520-mRNA-1 |
| chr1_3 | exon | 4546885 | 4547290 | 4546885 | ID=Msa0098520-mRNA-1:exon:1534;Parent=Msa0098520-mRNA-1 |
| chr1_3 | five_prime_UTR | 4541175 | 4541330 | 4541175 | ID=Msa0098520-mRNA-1:five_prime_utr;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4541331 | 4542062 | 4541331 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4543318 | 4544202 | 4543318 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4544415 | 4544546 | 4544415 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4544734 | 4544915 | 4544734 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4544998 | 4545109 | 4544998 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4545454 | 4545597 | 4545454 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | CDS | 4546885 | 4546965 | 4546885 | ID=Msa0098520-mRNA-1:cds;Parent=Msa0098520-mRNA-1 |
| chr1_3 | three_prime_UTR | 4546966 | 4547290 | 4546966 | ID=Msa0098520-mRNA-1:three_prime_utr;Parent=Msa0098520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
