Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389690 | XP_003589006.1 | 98.681 | 758 | 5 | 2 | 1 | 757 | 1 | 754 | 0.0 | 1533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389690 | sp|Q9LI74|CHUP1_ARATH | 62.264 | 265 | 99 | 1 | 488 | 751 | 718 | 982 | 1.53e-106 | 352 |
| Msa1389690 | sp|Q9LI74|CHUP1_ARATH | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.52e-25 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389690 | G7IB73 | 98.681 | 758 | 5 | 2 | 1 | 757 | 1 | 754 | 0.0 | 1533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048510 | Msa1389690 | 0.808629 | 2.819039e-50 | -8.615850e-47 |
| Msa0053230 | Msa1389690 | 0.896197 | 4.646406e-76 | -8.615850e-47 |
| Msa0077560 | Msa1389690 | 0.803961 | 2.714774e-49 | -8.615850e-47 |
| Msa0094780 | Msa1389690 | 0.801437 | 9.010016e-49 | -8.615850e-47 |
| Msa0098520 | Msa1389690 | 0.952956 | 7.877439e-111 | -8.615850e-47 |
| Msa0098730 | Msa1389690 | 0.870654 | 1.239486e-66 | -8.615850e-47 |
| Msa1387440 | Msa1389690 | 0.801244 | 9.864430e-49 | -8.615850e-47 |
| Msa1389690 | Msa1429070 | 0.802143 | 6.451144e-49 | -8.615850e-47 |
| Msa0666700 | Msa1389690 | 0.802933 | 4.434335e-49 | -8.615850e-47 |
| Msa0709440 | Msa1389690 | 0.824397 | 8.253901e-54 | -8.615850e-47 |
| Msa0709630 | Msa1389690 | 0.801192 | 1.011199e-48 | -8.615850e-47 |
| Msa0824450 | Msa1389690 | 0.805998 | 1.018121e-49 | -8.615850e-47 |
| Msa0190110 | Msa1389690 | 0.813800 | 2.130753e-51 | -8.615850e-47 |
| Msa0213030 | Msa1389690 | 0.824147 | 9.450146e-54 | -8.615850e-47 |
| Msa0225860 | Msa1389690 | 0.801152 | 1.030458e-48 | -8.615850e-47 |
| Msa1307630 | Msa1389690 | 0.802749 | 4.840024e-49 | -8.615850e-47 |
| Msa0481890 | Msa1389690 | 0.822281 | 2.576368e-53 | -8.615850e-47 |
| Msa1084530 | Msa1389690 | 0.822714 | 2.043603e-53 | -8.615850e-47 |
| Msa0271880 | Msa1389690 | 0.836415 | 9.484600e-57 | -8.615850e-47 |
| Msa0310850 | Msa1389690 | 0.818811 | 1.612793e-52 | -8.615850e-47 |
| Msa1125820 | Msa1389690 | 0.820963 | 5.196220e-53 | -8.615850e-47 |
| Msa1125990 | Msa1389690 | 0.825964 | 3.516346e-54 | -8.615850e-47 |
| Msa1171290 | Msa1389690 | 0.824055 | 9.932603e-54 | -8.615850e-47 |
| Msa1192570 | Msa1389690 | 0.830059 | 3.633725e-55 | -8.615850e-47 |
| Msa1215870 | Msa1389690 | 0.812629 | 3.849920e-51 | -8.615850e-47 |
| Msa0966320 | Msa1389690 | 0.807610 | 4.646751e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389690 | MtrunA17_Chr1g0151531 | 98.681 | 758 | 5 | 2 | 1 | 757 | 1 | 754 | 0.0 | 1533 |
| Msa1389690 | MtrunA17_Chr5g0422391 | 62.595 | 262 | 98 | 0 | 488 | 749 | 716 | 977 | 2.44e-111 | 361 |
| Msa1389690 | MtrunA17_Chr5g0422391 | 37.288 | 236 | 85 | 6 | 127 | 299 | 126 | 361 | 7.37e-29 | 124 |
| Msa1389690 | MtrunA17_Chr4g0045981 | 62.313 | 268 | 95 | 3 | 486 | 751 | 345 | 608 | 1.73e-109 | 347 |
| Msa1389690 | MtrunA17_Chr1g0198861 | 62.214 | 262 | 98 | 1 | 488 | 749 | 705 | 965 | 5.40e-109 | 355 |
| Msa1389690 | MtrunA17_Chr1g0198861 | 33.468 | 248 | 90 | 5 | 127 | 299 | 127 | 374 | 1.53e-25 | 113 |
| Msa1389690 | MtrunA17_Chr4g0069431 | 50.545 | 275 | 136 | 0 | 474 | 748 | 280 | 554 | 1.68e-88 | 290 |
| Msa1389690 | MtrunA17_Chr5g0430701 | 49.057 | 265 | 130 | 4 | 488 | 751 | 160 | 420 | 3.71e-82 | 269 |
| Msa1389690 | MtrunA17_Chr2g0307341 | 41.053 | 95 | 51 | 1 | 205 | 299 | 193 | 282 | 5.00e-12 | 69.3 |
| Msa1389690 | MtrunA17_Chr2g0330791 | 32.558 | 172 | 85 | 6 | 145 | 299 | 204 | 361 | 1.76e-11 | 67.4 |
| Msa1389690 | MtrunA17_Chr8g0340991 | 38.144 | 97 | 57 | 1 | 203 | 299 | 278 | 371 | 2.68e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1389690 | AT3G25690.3 | 62.264 | 265 | 99 | 1 | 488 | 751 | 577 | 841 | 7.44e-109 | 352 |
| Msa1389690 | AT3G25690.3 | 54.000 | 100 | 46 | 0 | 200 | 299 | 124 | 223 | 2.73e-25 | 112 |
| Msa1389690 | AT3G25690.1 | 62.264 | 265 | 99 | 1 | 488 | 751 | 718 | 982 | 1.56e-107 | 352 |
| Msa1389690 | AT3G25690.1 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.61e-26 | 115 |
| Msa1389690 | AT3G25690.2 | 62.264 | 265 | 99 | 1 | 488 | 751 | 718 | 982 | 1.56e-107 | 352 |
| Msa1389690 | AT3G25690.2 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.61e-26 | 115 |
| Msa1389690 | AT3G25690.6 | 62.264 | 265 | 99 | 1 | 488 | 751 | 718 | 982 | 1.56e-107 | 352 |
| Msa1389690 | AT3G25690.6 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.61e-26 | 115 |
| Msa1389690 | AT3G25690.4 | 62.264 | 265 | 99 | 1 | 488 | 751 | 718 | 982 | 1.56e-107 | 352 |
| Msa1389690 | AT3G25690.4 | 34.894 | 235 | 90 | 5 | 128 | 299 | 130 | 364 | 5.61e-26 | 115 |
| Msa1389690 | AT3G25690.5 | 62.264 | 265 | 99 | 1 | 488 | 751 | 720 | 984 | 1.60e-107 | 352 |
| Msa1389690 | AT3G25690.5 | 34.894 | 235 | 90 | 5 | 128 | 299 | 132 | 366 | 5.58e-26 | 115 |
| Msa1389690 | AT4G18570.1 | 60.806 | 273 | 98 | 4 | 485 | 751 | 350 | 619 | 2.95e-103 | 331 |
| Msa1389690 | AT1G48280.1 | 52.256 | 266 | 127 | 0 | 483 | 748 | 274 | 539 | 1.10e-89 | 293 |
| Msa1389690 | AT4G18570.2 | 59.709 | 206 | 76 | 3 | 485 | 684 | 350 | 554 | 7.76e-73 | 248 |
| Msa1389690 | AT1G07120.1 | 46.097 | 269 | 132 | 4 | 488 | 752 | 128 | 387 | 1.20e-71 | 239 |
| Msa1389690 | AT1G07120.2 | 45.771 | 201 | 100 | 3 | 488 | 684 | 128 | 323 | 2.81e-48 | 174 |
Find 164 sgRNAs with CRISPR-Local
Find 333 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGCCTCGGCTTTAAATT+TGG | 0.233447 | tig0021290:-84693 | Msa1389690:intergenic |
| TGTTGTATATTAGATATAAC+TGG | 0.255930 | tig0021290:+87907 | Msa1389690:three_prime_UTR |
| GGTGGTGGCGGAGGTGGAGG+TGG | 0.259596 | tig0021290:-85349 | Msa1389690:intergenic |
| TACTTGTAGGCTTTCTTCTA+TGG | 0.262191 | tig0021290:+83367 | Msa1389690:CDS |
| AGCCAAATTGTTAATCAAAA+TGG | 0.263184 | tig0021290:-88060 | Msa1389690:intergenic |
| TGATATTGCTCTAAAGAAAA+TGG | 0.268432 | tig0021290:+86309 | Msa1389690:CDS |
| ATGCTTGATAATGGAATTAT+TGG | 0.278942 | tig0021290:+86515 | Msa1389690:CDS |
| CAGAACAACAATGTTGGATT+TGG | 0.279832 | tig0021290:-82606 | Msa1389690:intergenic |
| AAAACTAGGATCAGTTAAAT+TGG | 0.291605 | tig0021290:+86888 | Msa1389690:CDS |
| GGTGGCGGAGGTGGAGGTGG+AGG | 0.292796 | tig0021290:-85346 | Msa1389690:intergenic |
| AAATGATCACTACTAGTTAT+TGG | 0.298597 | tig0021290:-84983 | Msa1389690:intergenic |
| ATCATTCAAAACCAAGGTTA+TGG | 0.304659 | tig0021290:+82811 | Msa1389690:CDS |
| TCTATGATTGCACTACATTT+TGG | 0.309549 | tig0021290:+87862 | Msa1389690:three_prime_UTR |
| TGGGGTGCACACATTGTAAA+AGG | 0.310063 | tig0021290:+82831 | Msa1389690:CDS |
| AGATCCTGCAATGGATTATA+TGG | 0.310246 | tig0021290:+86969 | Msa1389690:CDS |
| TGAGCTGAGAAGGTTGAATA+AGG | 0.327504 | tig0021290:+83319 | Msa1389690:CDS |
| AGAACAACAATGTTGGATTT+GGG | 0.330888 | tig0021290:-82605 | Msa1389690:intergenic |
| GGAGGTGGTGGCGGAGGTGG+AGG | 0.334995 | tig0021290:-85352 | Msa1389690:intergenic |
| AAGCTTGTTACAAGAGTCTA+AGG | 0.336420 | tig0021290:+83091 | Msa1389690:CDS |
| CGAATTCACCCATCTCAAAT+AGG | 0.339553 | tig0021290:-84798 | Msa1389690:intergenic |
| GAAGGTCTTGGAGGTGGATT+AGG | 0.341697 | tig0021290:-85259 | Msa1389690:intergenic |
| GGCGGAGGTGGAGGTGGAGG+AGG | 0.342439 | tig0021290:-85343 | Msa1389690:intergenic |
| AAATTGGATTGAATCGATTT+CGG | 0.346302 | tig0021290:+85045 | Msa1389690:CDS |
| TGTAATGCAATCATAGTCTA+TGG | 0.350020 | tig0021290:-87796 | Msa1389690:intergenic |
| AATGTGTCAGCTTTCTTCTC+TGG | 0.352626 | tig0021290:-86202 | Msa1389690:intergenic |
| TATTTGTTAATGCAGTTTGC+AGG | 0.371953 | tig0021290:+87664 | Msa1389690:intron |
| AGCAATATCACAAGGTAGCC+TGG | 0.385664 | tig0021290:-86296 | Msa1389690:intergenic |
| AGAAGAAGACATTCAATTAG+TGG | 0.386625 | tig0021290:+85079 | Msa1389690:CDS |
| ACATTAAGAGAAGCAGCATT+TGG | 0.387362 | tig0021290:+86220 | Msa1389690:CDS |
| GTAGAATGGATGCTTGATAA+TGG | 0.387727 | tig0021290:+86506 | Msa1389690:CDS |
| AACTGATTTGTTCACGGAGT+TGG | 0.390136 | tig0021290:+83058 | Msa1389690:CDS |
| TTTGAATGATTATTGTTGTT+GGG | 0.391699 | tig0021290:-82798 | Msa1389690:intergenic |
| TCATTCAAAACCAAGGTTAT+GGG | 0.394475 | tig0021290:+82812 | Msa1389690:CDS |
| CTTGAATGAGGTGGAACAAA+AGG | 0.398864 | tig0021290:-82954 | Msa1389690:intergenic |
| CTGGCCAATCAAAATGCTTA+AGG | 0.400178 | tig0021290:-86183 | Msa1389690:intergenic |
| ATAGGAGGTGGTGGCGGAGG+TGG | 0.400819 | tig0021290:-85355 | Msa1389690:intergenic |
| ATTTGTTCAACAATGTGCTT+TGG | 0.404142 | tig0021290:+85216 | Msa1389690:CDS |
| AACCTTCTACTTGTTTGCTC+AGG | 0.411065 | tig0021290:-84739 | Msa1389690:intergenic |
| GAAATAGAACATGAAGGTCT+TGG | 0.415313 | tig0021290:-85271 | Msa1389690:intergenic |
| GGGTGATTTGTCATGTTCTC+AGG | 0.415794 | tig0021290:+82995 | Msa1389690:CDS |
| AGAAACAATGCATGCATTTG+AGG | 0.415984 | tig0021290:+87699 | Msa1389690:CDS |
| AAATGGCTTATCCGAGCAAT+TGG | 0.418046 | tig0021290:+83214 | Msa1389690:CDS |
| TCATGAAGAGAGATTCTAGA+AGG | 0.427451 | tig0021290:+85449 | Msa1389690:CDS |
| TAGTGCAAATAGCTTCAATT+TGG | 0.431295 | tig0021290:+84940 | Msa1389690:CDS |
| AACAATGTGCTTTGGAGAAG+AGG | 0.433159 | tig0021290:+85224 | Msa1389690:CDS |
| CTACGAACATCTGCAACATC+TGG | 0.434869 | tig0021290:-85502 | Msa1389690:intergenic |
| CCTCTAGATGCAAAACTCAT+AGG | 0.434889 | tig0021290:-85373 | Msa1389690:intergenic |
| GATGTTCGTAGCAGCATGAT+TGG | 0.434922 | tig0021290:+85514 | Msa1389690:CDS |
| TGACTTTGTTTGAACTTCAA+TGG | 0.436133 | tig0021290:-86935 | Msa1389690:intergenic |
| ATCTTCAACTGATTTGTTCA+CGG | 0.437733 | tig0021290:+83052 | Msa1389690:CDS |
| AAGAGTGAAAAGATCGTTGA+TGG | 0.445561 | tig0021290:+82974 | Msa1389690:CDS |
| TTCATAGGTGCAATCTGGAT+TGG | 0.447662 | tig0021290:+87822 | Msa1389690:three_prime_UTR |
| AAGCCGAGGCATCACTGCTC+AGG | 0.449351 | tig0021290:+84702 | Msa1389690:CDS |
| CTCATAGGAGGTGGTGGCGG+AGG | 0.453395 | tig0021290:-85358 | Msa1389690:intergenic |
| AGTTTCAAATTCCTGTAGAA+TGG | 0.456163 | tig0021290:+86492 | Msa1389690:CDS |
| AGAAAAGGAACCTTACTTGT+AGG | 0.459753 | tig0021290:+83354 | Msa1389690:CDS |
| ATTTGCTTTCAGAATCCATC+AGG | 0.459997 | tig0021290:+87008 | Msa1389690:CDS |
| CCACAAGTGTTTCAGTATGA+AGG | 0.460036 | tig0021290:+82677 | Msa1389690:exon |
| ATTGATGATGATGATGTAAG+AGG | 0.460827 | tig0021290:-82573 | Msa1389690:intergenic |
| AGGAGTTGCATATGCAGAAA+AGG | 0.464909 | tig0021290:+83339 | Msa1389690:CDS |
| TAGCCTGGGATCATCCTTGT+AGG | 0.469351 | tig0021290:-86281 | Msa1389690:intergenic |
| GGAAAGACAAGAGGAAGATA+AGG | 0.473310 | tig0021290:+83262 | Msa1389690:CDS |
| TAGAAGAAAGCCTACAAGTA+AGG | 0.477948 | tig0021290:-83364 | Msa1389690:intergenic |
| TGAAAGCAAATCTCACTCCT+TGG | 0.483345 | tig0021290:-86996 | Msa1389690:intergenic |
| TTTGTTGTTTGAAGCTTTGG+TGG | 0.483857 | tig0021290:-82765 | Msa1389690:intergenic |
| CTGCTACTCACAACAGATTG+AGG | 0.487231 | tig0021290:-84881 | Msa1389690:intergenic |
| AGAACCATATAATCCATTGC+AGG | 0.490578 | tig0021290:-86973 | Msa1389690:intergenic |
| TTCTAATAGCTCAGAGGAAG+AGG | 0.492413 | tig0021290:+85102 | Msa1389690:CDS |
| CTTTGGAGAAGAGGGCGTTA+AGG | 0.492627 | tig0021290:+85233 | Msa1389690:CDS |
| AAAAGAAATCGAAAAGGAAT+CGG | 0.496014 | tig0021290:+85180 | Msa1389690:CDS |
| AATCTCTCTTCATGAGTGAA+TGG | 0.496096 | tig0021290:-85441 | Msa1389690:intergenic |
| TATTTCTTAGGTGGATGAAA+GGG | 0.500018 | tig0021290:+86156 | Msa1389690:intron |
| TGTAAATTCATTGATTAGAG+AGG | 0.500507 | tig0021290:+85815 | Msa1389690:CDS |
| GACCTGAGCAAACAAGTAGA+AGG | 0.501020 | tig0021290:+84737 | Msa1389690:CDS |
| GCACATTGTTGAACAAATAA+CGG | 0.506477 | tig0021290:-85211 | Msa1389690:intergenic |
| TTATCAAGCATCCATTCTAC+AGG | 0.515341 | tig0021290:-86503 | Msa1389690:intergenic |
| TTATTTCTTAGGTGGATGAA+AGG | 0.515856 | tig0021290:+86155 | Msa1389690:intron |
| GTTGTATATTAGATATAACT+GGG | 0.523844 | tig0021290:+87908 | Msa1389690:three_prime_UTR |
| TAGTCTATGGCTTACTGAGA+TGG | 0.527730 | tig0021290:-87783 | Msa1389690:intergenic |
| GAACATGAAGGTCTTGGAGG+TGG | 0.528351 | tig0021290:-85265 | Msa1389690:intergenic |
| AAAGAATACATGCTCAACAT+TGG | 0.529178 | tig0021290:+84838 | Msa1389690:CDS |
| TTAGAACAGAACAACAATGT+TGG | 0.530895 | tig0021290:-82612 | Msa1389690:intergenic |
| TGTTGAACAAATAACGGCAT+TGG | 0.533882 | tig0021290:-85205 | Msa1389690:intergenic |
| CCTTCATACTGAAACACTTG+TGG | 0.535452 | tig0021290:-82677 | Msa1389690:intergenic |
| GAAGATTGTCTCCTATGAGT+TGG | 0.536595 | tig0021290:-83035 | Msa1389690:intergenic |
| AGGAGCTAGCCTATTTGAGA+TGG | 0.537341 | tig0021290:+84789 | Msa1389690:CDS |
| TGCTACTCACAACAGATTGA+GGG | 0.539890 | tig0021290:-84880 | Msa1389690:intergenic |
| GGCTTACTGAGATGGTAAGC+TGG | 0.541384 | tig0021290:-87775 | Msa1389690:intergenic |
| ATCAGAAGTTTCCTCCTACA+AGG | 0.542789 | tig0021290:+86267 | Msa1389690:CDS |
| AAATTGTTAATCAAAATGGT+AGG | 0.543400 | tig0021290:-88056 | Msa1389690:intergenic |
| TTGAAGTTGTTGAGCTGAGA+AGG | 0.543563 | tig0021290:+83309 | Msa1389690:CDS |
| CAATCTGTTGTGAGTAGCAG+TGG | 0.547314 | tig0021290:+84884 | Msa1389690:CDS |
| AACAACAATGTTGGATTTGG+GGG | 0.549616 | tig0021290:-82603 | Msa1389690:intergenic |
| TTGCTAGAAATAGAACATGA+AGG | 0.550243 | tig0021290:-85277 | Msa1389690:intergenic |
| TTGAATGAGGTGGAACAAAA+GGG | 0.552966 | tig0021290:-82953 | Msa1389690:intergenic |
| GGCTAAGTTGAATGCTGAGT+TGG | 0.555894 | tig0021290:+83121 | Msa1389690:CDS |
| AAGTGGCTCGATGATGAACT+TGG | 0.556144 | tig0021290:+85885 | Msa1389690:CDS |
| ATAGAACATGAAGGTCTTGG+AGG | 0.559160 | tig0021290:-85268 | Msa1389690:intergenic |
| GCAAAACTCATAGGAGGTGG+TGG | 0.559650 | tig0021290:-85364 | Msa1389690:intergenic |
| ACAAACGAGCAGATTAAATG+AGG | 0.560071 | tig0021290:+84763 | Msa1389690:CDS |
| CATTCAAAACCAAGGTTATG+GGG | 0.561756 | tig0021290:+82813 | Msa1389690:CDS |
| TCCCTGTAGAATGGAACGTA+CGG | 0.561761 | tig0021290:+86421 | Msa1389690:intron |
| TTGTTAATGCAGTTTGCAGG+AGG | 0.565222 | tig0021290:+87667 | Msa1389690:intron |
| TGTTAATGCAGTTTGCAGGA+GGG | 0.566443 | tig0021290:+87668 | Msa1389690:intron |
| TCTAGAAGGGATTCTTCAAG+TGG | 0.568375 | tig0021290:+85463 | Msa1389690:CDS |
| GCAATATCACAAGGTAGCCT+GGG | 0.568968 | tig0021290:-86295 | Msa1389690:intergenic |
| ATGTTTAAAAGAAATCGAAA+AGG | 0.569919 | tig0021290:+85174 | Msa1389690:CDS |
| ACAATGTGCTTTGGAGAAGA+GGG | 0.575048 | tig0021290:+85225 | Msa1389690:CDS |
| TTTATACGCTTCTCCGCACG+AGG | 0.576497 | tig0021290:+86444 | Msa1389690:CDS |
| TTGGATTGAATCGATTTCGG+AGG | 0.576920 | tig0021290:+85048 | Msa1389690:CDS |
| ATTGAGTAGGAGCTGTGGAT+TGG | 0.577398 | tig0021290:+83241 | Msa1389690:CDS |
| AATTGTTAATCAAAATGGTA+GGG | 0.577822 | tig0021290:-88055 | Msa1389690:intergenic |
| GTGTAGGAAGAATCAGAGTG+AGG | 0.578394 | tig0021290:+83148 | Msa1389690:CDS |
| TACAACAACAATAACAACCT+CGG | 0.581296 | tig0021290:+82902 | Msa1389690:CDS |
| GAGCAGATTAAATGAGGTGG+AGG | 0.582062 | tig0021290:+84769 | Msa1389690:CDS |
| GAACAACAATGTTGGATTTG+GGG | 0.586269 | tig0021290:-82604 | Msa1389690:intergenic |
| TGAGCATGTATTCTTTAACT+CGG | 0.587390 | tig0021290:-84831 | Msa1389690:intergenic |
| CATGAAGAGAGATTCTAGAA+GGG | 0.589895 | tig0021290:+85450 | Msa1389690:CDS |
| ACTCAATGCAACCAATTGCT+CGG | 0.590814 | tig0021290:-83225 | Msa1389690:intergenic |
| AAACTCATAGGAGGTGGTGG+CGG | 0.590815 | tig0021290:-85361 | Msa1389690:intergenic |
| ACAAGAGTCTAAGGAGAGAG+AGG | 0.592942 | tig0021290:+83100 | Msa1389690:CDS |
| AAGCCTGAGCAGTGATGCCT+CGG | 0.597575 | tig0021290:-84705 | Msa1389690:intergenic |
| CTGGTTAGTAACAACATCCG+AGG | 0.598131 | tig0021290:-82919 | Msa1389690:intergenic |
| AAAACGAGCACCACAAGTGG+TGG | 0.598795 | tig0021290:+85411 | Msa1389690:CDS |
| TTCACTGATGAGAAATTGCA+AGG | 0.600289 | tig0021290:+86469 | Msa1389690:CDS |
| AGAAGGGATTCTTCAAGTGG+AGG | 0.600617 | tig0021290:+85466 | Msa1389690:CDS |
| GATGCAAAACTCATAGGAGG+TGG | 0.600680 | tig0021290:-85367 | Msa1389690:intergenic |
| TTGTTCTGAAAACTCTTCTG+AGG | 0.601816 | tig0021290:+83403 | Msa1389690:CDS |
| ATCTAGAGGTAACACGGCGA+TGG | 0.603006 | tig0021290:+85387 | Msa1389690:CDS |
| AACGAGCAGATTAAATGAGG+TGG | 0.603393 | tig0021290:+84766 | Msa1389690:CDS |
| GGAGCTAGCCTATTTGAGAT+GGG | 0.605177 | tig0021290:+84790 | Msa1389690:CDS |
| CCTCCTACAAGGATGATCCC+AGG | 0.607350 | tig0021290:+86278 | Msa1389690:CDS |
| TATATTAGATATAACTGGGG+GGG | 0.607492 | tig0021290:+87912 | Msa1389690:three_prime_UTR |
| TGTTGCCAAATTTAAAGCCG+AGG | 0.609728 | tig0021290:+84688 | Msa1389690:CDS |
| ATGTGTGCACCCCATAACCT+TGG | 0.609951 | tig0021290:-82822 | Msa1389690:intergenic |
| ATGCTGAGTTGGTTGAGTGT+AGG | 0.613954 | tig0021290:+83132 | Msa1389690:CDS |
| CCTGGGATCATCCTTGTAGG+AGG | 0.614989 | tig0021290:-86278 | Msa1389690:intergenic |
| TGGATTGAATCGATTTCGGA+GGG | 0.615092 | tig0021290:+85049 | Msa1389690:CDS |
| ATGTAGTGGCATTTGTGAAG+TGG | 0.615146 | tig0021290:+85868 | Msa1389690:CDS |
| TGAGAACATAGATGATGTAG+TGG | 0.615178 | tig0021290:+85854 | Msa1389690:CDS |
| TGATAATGGAATTATTGGCA+AGG | 0.615864 | tig0021290:+86520 | Msa1389690:CDS |
| CTGTGGATTGGAAAGACAAG+AGG | 0.617229 | tig0021290:+83253 | Msa1389690:CDS |
| TTGTATATTAGATATAACTG+GGG | 0.619257 | tig0021290:+87909 | Msa1389690:three_prime_UTR |
| TGTATATTAGATATAACTGG+GGG | 0.627219 | tig0021290:+87910 | Msa1389690:three_prime_UTR |
| ATGGATTATATGGTTCTCCA+AGG | 0.628322 | tig0021290:+86979 | Msa1389690:CDS |
| TTCTTTAGAGCAATATCACA+AGG | 0.634972 | tig0021290:-86304 | Msa1389690:intergenic |
| AGACAAGAGGAAGATAAGGA+TGG | 0.637436 | tig0021290:+83266 | Msa1389690:CDS |
| CTAGATGCAAAACTCATAGG+AGG | 0.640933 | tig0021290:-85370 | Msa1389690:intergenic |
| TGGTACAGTTCCACCACTTG+TGG | 0.647569 | tig0021290:-85421 | Msa1389690:intergenic |
| CTATGAGTTGGAAAAGCATG+TGG | 0.648114 | tig0021290:-83023 | Msa1389690:intergenic |
| GTTGCATTGAGTAGGAGCTG+TGG | 0.648976 | tig0021290:+83236 | Msa1389690:CDS |
| ACAATAATCATTCAAAACCA+AGG | 0.650093 | tig0021290:+82805 | Msa1389690:CDS |
| AGAGTGAAAAGATCGTTGAT+GGG | 0.651953 | tig0021290:+82975 | Msa1389690:CDS |
| AGCAATTGGTTGCATTGAGT+AGG | 0.652247 | tig0021290:+83228 | Msa1389690:CDS |
| GGTAAAACGAGCACCACAAG+TGG | 0.656149 | tig0021290:+85408 | Msa1389690:CDS |
| CAGCAAGTAAATGTGATGAA+CGG | 0.659839 | tig0021290:-85549 | Msa1389690:intergenic |
| ATTTGACAAAGATCCTGCAA+TGG | 0.660224 | tig0021290:+86960 | Msa1389690:CDS |
| TCATCAGTGAATCCCTCGTG+CGG | 0.664925 | tig0021290:-86457 | Msa1389690:intergenic |
| GATTAGAGAGGTGAACGATG+CGG | 0.673417 | tig0021290:+85827 | Msa1389690:CDS |
| AAGGCAGATATTGAAACACA+AGG | 0.674344 | tig0021290:+85786 | Msa1389690:CDS |
| AGTTCTTTCTCTGATCAATG+TGG | 0.677630 | tig0021290:+84917 | Msa1389690:CDS |
| GTATATTAGATATAACTGGG+GGG | 0.704956 | tig0021290:+87911 | Msa1389690:three_prime_UTR |
| TTATACGCTTCTCCGCACGA+GGG | 0.706325 | tig0021290:+86445 | Msa1389690:CDS |
| TAGTGGTTCTAATAGCTCAG+AGG | 0.707483 | tig0021290:+85096 | Msa1389690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAAATTATTTTTGTATA+TGG | + | tig0021290:83585-83604 | Msa1389690:intron | 10.0% |
| !! | TTATGAAAATAAGCTTAAAA+AGG | + | tig0021290:83648-83667 | Msa1389690:intron | 15.0% |
| !! | ATTCACCAATATAAATATAA+TGG | - | tig0021290:85686-85705 | Msa1389690:intergenic | 15.0% |
| !! | ATTATATTTATATTGGTGAA+TGG | + | tig0021290:85685-85704 | Msa1389690:intron | 15.0% |
| !! | AGAAATAGATATTAATATTC+AGG | - | tig0021290:85753-85772 | Msa1389690:intergenic | 15.0% |
| !!! | TTGTGTATATATTATTTCTT+AGG | + | tig0021290:86144-86163 | Msa1389690:intron | 15.0% |
| !! | ATATCAAGATTTGAAAAAAT+TGG | + | tig0021290:86243-86262 | Msa1389690:CDS | 15.0% |
| !!! | AAGAAACATATTTTTGTTAT+TGG | - | tig0021290:86664-86683 | Msa1389690:intergenic | 15.0% |
| !!! | TAACAAAAATATGTTTCTTT+TGG | + | tig0021290:86665-86684 | Msa1389690:intron | 15.0% |
| !!! | TGTTATTTATTGATCTATTA+AGG | + | tig0021290:86732-86751 | Msa1389690:intron | 15.0% |
| !!! | AATTTTTTGTAGATAAAACT+AGG | + | tig0021290:86874-86893 | Msa1389690:intron | 15.0% |
| !! | AAATCCAAATTATTATACAA+GGG | + | tig0021290:87305-87324 | Msa1389690:intron | 15.0% |
| !! | ATGAAGAAAAATATATTATG+TGG | + | tig0021290:88020-88039 | Msa1389690:three_prime_UTR | 15.0% |
| !!! | ATCAGAAAATTTTGAAACTT+TGG | - | tig0021290:82736-82755 | Msa1389690:intergenic | 20.0% |
| !!! | TTTGAATGATTATTGTTGTT+GGG | - | tig0021290:82801-82820 | Msa1389690:intergenic | 20.0% |
| !!! | TTTTGAATGATTATTGTTGT+TGG | - | tig0021290:82802-82821 | Msa1389690:intergenic | 20.0% |
| !!! | GTATTTTGTTGTTTTTTTGT+CGG | - | tig0021290:82885-82904 | Msa1389690:intergenic | 20.0% |
| !!! | ACACAATTTTTTTTTCTCAT+GGG | + | tig0021290:83464-83483 | Msa1389690:intron | 20.0% |
| !! | GCTTATTTAAATTTACCTAT+TGG | - | tig0021290:83987-84006 | Msa1389690:intergenic | 20.0% |
| !!! | TGTAGGAGTATTTTTTTTTA+AGG | - | tig0021290:84368-84387 | Msa1389690:intergenic | 20.0% |
| !! | ATAGTATCATTGACAAAAAT+TGG | + | tig0021290:85029-85048 | Msa1389690:CDS | 20.0% |
| !! | ATGTTTAAAAGAAATCGAAA+AGG | + | tig0021290:85174-85193 | Msa1389690:CDS | 20.0% |
| !!! | TTTAATAAGTTGGATACATA+AGG | - | tig0021290:85589-85608 | Msa1389690:intergenic | 20.0% |
| !! | AAATATGGCATTTAATAAGT+TGG | - | tig0021290:85599-85618 | Msa1389690:intergenic | 20.0% |
| !! | AAATTCGACATGAAAAAATA+TGG | - | tig0021290:85614-85633 | Msa1389690:intergenic | 20.0% |
| !! | TGAAGCCATTATATTTATAT+TGG | + | tig0021290:85678-85697 | Msa1389690:intron | 20.0% |
| !! | TATTAGTATTCAAGATATCA+TGG | - | tig0021290:85714-85733 | Msa1389690:intergenic | 20.0% |
| !! | ATTTCTTAACATACAGATAA+AGG | + | tig0021290:85767-85786 | Msa1389690:intron | 20.0% |
| !!! | TGTATATATTATTTCTTAGG+TGG | + | tig0021290:86147-86166 | Msa1389690:intron | 20.0% |
| !! | TTATTGGATGAAAAAACAAT+TGG | - | tig0021290:86648-86667 | Msa1389690:intergenic | 20.0% |
| !!! | TATACAACTTGTTTTAACAT+TGG | + | tig0021290:86844-86863 | Msa1389690:intron | 20.0% |
| !! | CAAATCCAAATTATTATACA+AGG | + | tig0021290:87304-87323 | Msa1389690:intron | 20.0% |
| !! | AAAACCCTTGTATAATAATT+TGG | - | tig0021290:87312-87331 | Msa1389690:intergenic | 20.0% |
| !! | TGTTGTATATTAGATATAAC+TGG | + | tig0021290:87907-87926 | Msa1389690:three_prime_UTR | 20.0% |
| !! | GTTGTATATTAGATATAACT+GGG | + | tig0021290:87908-87927 | Msa1389690:three_prime_UTR | 20.0% |
| !! | TTGTATATTAGATATAACTG+GGG | + | tig0021290:87909-87928 | Msa1389690:three_prime_UTR | 20.0% |
| !! | AATTGTTAATCAAAATGGTA+GGG | - | tig0021290:88058-88077 | Msa1389690:intergenic | 20.0% |
| !! | AAATTGTTAATCAAAATGGT+AGG | - | tig0021290:88059-88078 | Msa1389690:intergenic | 20.0% |
| !!! | TACCATTTTGATTAACAATT+TGG | + | tig0021290:88058-88077 | Msa1389690:three_prime_UTR | 20.0% |
| ! | ACAATAATCATTCAAAACCA+AGG | + | tig0021290:82805-82824 | Msa1389690:CDS | 25.0% |
| ! | TTGTTAGAAGAAGAGAAAAA+TGG | + | tig0021290:83197-83216 | Msa1389690:CDS | 25.0% |
| !!! | TGGTTGATTCAATTTTTGTA+TGG | + | tig0021290:83440-83459 | Msa1389690:intron | 25.0% |
| !!! | GGTTGATTCAATTTTTGTAT+GGG | + | tig0021290:83441-83460 | Msa1389690:intron | 25.0% |
| !!! | GACACAATTTTTTTTTCTCA+TGG | + | tig0021290:83463-83482 | Msa1389690:intron | 25.0% |
| ! | TTGGAATAGAAGATATGAAT+AGG | + | tig0021290:83495-83514 | Msa1389690:intron | 25.0% |
| ! | TGGAATAGAAGATATGAATA+GGG | + | tig0021290:83496-83515 | Msa1389690:intron | 25.0% |
| ! | TTTGTTTGGATAAACAACTT+GGG | + | tig0021290:83520-83539 | Msa1389690:intron | 25.0% |
| ! | TATAAGCTATAAGCTATATC+AGG | + | tig0021290:83621-83640 | Msa1389690:intron | 25.0% |
| ! | ATAAGCTATAAGCTATATCA+GGG | + | tig0021290:83622-83641 | Msa1389690:intron | 25.0% |
| ! | AAAGGCTTATAAAATGTACA+TGG | - | tig0021290:83922-83941 | Msa1389690:intergenic | 25.0% |
| ! | GTATATGCAAATTAGAATAG+AGG | + | tig0021290:84089-84108 | Msa1389690:intron | 25.0% |
| ! | TACACTTGTAATACTTGATT+TGG | + | tig0021290:84119-84138 | Msa1389690:intron | 25.0% |
| ! | ACACTTGTAATACTTGATTT+GGG | + | tig0021290:84120-84139 | Msa1389690:intron | 25.0% |
| ! | ACTTATTTCAACTTACTGTT+TGG | + | tig0021290:84450-84469 | Msa1389690:intron | 25.0% |
| ! | ATACACTAACCTAAGTTAAA+TGG | - | tig0021290:84544-84563 | Msa1389690:intergenic | 25.0% |
| !! | ATCATAAAAGCACAATATGA+AGG | - | tig0021290:84652-84671 | Msa1389690:intergenic | 25.0% |
| ! | AAATGATCACTACTAGTTAT+TGG | - | tig0021290:84986-85005 | Msa1389690:intergenic | 25.0% |
| !! | AAATTGGATTGAATCGATTT+CGG | + | tig0021290:85045-85064 | Msa1389690:CDS | 25.0% |
| ! | AAAAGAAATCGAAAAGGAAT+CGG | + | tig0021290:85180-85199 | Msa1389690:CDS | 25.0% |
| !! | TGTAAATTCATTGATTAGAG+AGG | + | tig0021290:85815-85834 | Msa1389690:CDS | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | - | tig0021290:85991-86010 | Msa1389690:intergenic | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | - | tig0021290:85997-86016 | Msa1389690:intergenic | 25.0% |
| !!! | TTATAATTCTGTGATGGATA+AGG | - | tig0021290:85991-86010 | Msa1389690:intergenic | 25.0% |
| ! | CACATATTATAATTCTGTGA+TGG | - | tig0021290:85997-86016 | Msa1389690:intergenic | 25.0% |
| !!! | TGATATTGCTCTAAAGAAAA+TGG | + | tig0021290:86309-86328 | Msa1389690:CDS | 25.0% |
| !!! | ATGCTTGATAATGGAATTAT+TGG | + | tig0021290:86515-86534 | Msa1389690:CDS | 25.0% |
| !! | GTTTTTCTTATCAACTCTTT+AGG | - | tig0021290:86707-86726 | Msa1389690:intergenic | 25.0% |
| ! | ATCTGATATTGCTTCTTTAT+AGG | + | tig0021290:86818-86837 | Msa1389690:intron | 25.0% |
| ! | AAAACTAGGATCAGTTAAAT+TGG | + | tig0021290:86888-86907 | Msa1389690:CDS | 25.0% |
| !! | TGGCTAAAAAGTATATGAAA+AGG | + | tig0021290:86908-86927 | Msa1389690:CDS | 25.0% |
| !! | GGCTAAAAAGTATATGAAAA+GGG | + | tig0021290:86909-86928 | Msa1389690:CDS | 25.0% |
| ! | GATACTGAAGTATATTATGT+GGG | - | tig0021290:87039-87058 | Msa1389690:intergenic | 25.0% |
| ! | AGATACTGAAGTATATTATG+TGG | - | tig0021290:87040-87059 | Msa1389690:intergenic | 25.0% |
| !! | ATAGGACATGTTTATTTCTT+AGG | - | tig0021290:87212-87231 | Msa1389690:intergenic | 25.0% |
| !!! | ATTAGGTTCAGTTTTAGTTT+TGG | - | tig0021290:87411-87430 | Msa1389690:intergenic | 25.0% |
| ! | TGGTCATAATATTCACAATT+AGG | - | tig0021290:87428-87447 | Msa1389690:intergenic | 25.0% |
| ! | TTAATAACAAAGACAGATTC+AGG | - | tig0021290:87615-87634 | Msa1389690:intergenic | 25.0% |
| !! | GATTGCATTACATTTTTCAT+AGG | + | tig0021290:87807-87826 | Msa1389690:three_prime_UTR | 25.0% |
| !!! | GATTGGATTAGTTTTGTATT+TGG | + | tig0021290:87839-87858 | Msa1389690:three_prime_UTR | 25.0% |
| ! | TGTATATTAGATATAACTGG+GGG | + | tig0021290:87910-87929 | Msa1389690:three_prime_UTR | 25.0% |
| ! | AGCCAAATTGTTAATCAAAA+TGG | - | tig0021290:88063-88082 | Msa1389690:intergenic | 25.0% |
| !!! | TAAGAGGTTTTTTTCTGTGA+GGG | - | tig0021290:82560-82579 | Msa0792880:intergenic | 30.0% |
| !! | ATTGATGATGATGATGTAAG+AGG | - | tig0021290:82576-82595 | Msa0792880:intergenic | 30.0% |
| AGAACAACAATGTTGGATTT+GGG | - | tig0021290:82608-82627 | Msa0792880:intergenic | 30.0% | |
| TTAGAACAGAACAACAATGT+TGG | - | tig0021290:82615-82634 | Msa0792880:intergenic | 30.0% | |
| !! | CAGTGTTTTTGAGAAGTTTA+AGG | - | tig0021290:82655-82674 | Msa0792880:intergenic | 30.0% |
| !!! | CTTTGGTCTTATTTTCTGAT+GGG | - | tig0021290:82719-82738 | Msa1389690:intergenic | 30.0% |
| !!! | ACTTTGGTCTTATTTTCTGA+TGG | - | tig0021290:82720-82739 | Msa1389690:intergenic | 30.0% |
| !!! | GTTTTTGTTGTTTGAAGCTT+TGG | - | tig0021290:82771-82790 | Msa1389690:intergenic | 30.0% |
| ATCATTCAAAACCAAGGTTA+TGG | + | tig0021290:82811-82830 | Msa1389690:CDS | 30.0% | |
| TCATTCAAAACCAAGGTTAT+GGG | + | tig0021290:82812-82831 | Msa1389690:CDS | 30.0% | |
| !!! | TTGTTTTTTTGTCGGAAGTT+TGG | - | tig0021290:82877-82896 | Msa1389690:intergenic | 30.0% |
| TACAACAACAATAACAACCT+CGG | + | tig0021290:82902-82921 | Msa1389690:CDS | 30.0% | |
| !! | ATCTTCAACTGATTTGTTCA+CGG | + | tig0021290:83052-83071 | Msa1389690:CDS | 30.0% |
| ! | CTGAGGTAATTTTTGCAATT+TGG | + | tig0021290:83420-83439 | Msa1389690:intron | 30.0% |
| !!! | TTTTTTTTCTCATGGGTTGT+TGG | + | tig0021290:83471-83490 | Msa1389690:intron | 30.0% |
| ! | CTTTGTTTGGATAAACAACT+TGG | + | tig0021290:83519-83538 | Msa1389690:intron | 30.0% |
| TTGTTTGGATAAACAACTTG+GGG | + | tig0021290:83521-83540 | Msa1389690:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | tig0021290:83547-83566 | Msa1389690:intergenic | 30.0% | |
| TGTTAGAGAGCTTATGAAAA+CGG | - | tig0021290:83695-83714 | Msa1389690:intergenic | 30.0% | |
| ! | ACCTGTGAGATTATTAGTTT+CGG | - | tig0021290:83957-83976 | Msa1389690:intergenic | 30.0% |
| ! | TTCTAATTTGCATATACACC+TGG | - | tig0021290:84086-84105 | Msa1389690:intergenic | 30.0% |
| TATGCAAATTAGAATAGAGG+AGG | + | tig0021290:84092-84111 | Msa1389690:intron | 30.0% | |
| ATGAATAACTGTAAGCTTGT+AGG | - | tig0021290:84385-84404 | Msa1389690:intergenic | 30.0% | |
| TACAAGCTTACAGTTATTCA+TGG | + | tig0021290:84384-84403 | Msa1389690:intron | 30.0% | |
| TGAGCATGTATTCTTTAACT+CGG | - | tig0021290:84834-84853 | Msa1389690:intergenic | 30.0% | |
| AAAGAATACATGCTCAACAT+TGG | + | tig0021290:84838-84857 | Msa1389690:CDS | 30.0% | |
| TAGTGCAAATAGCTTCAATT+TGG | + | tig0021290:84940-84959 | Msa1389690:CDS | 30.0% | |
| AGAAGAAGACATTCAATTAG+TGG | + | tig0021290:85079-85098 | Msa1389690:CDS | 30.0% | |
| GCACATTGTTGAACAAATAA+CGG | - | tig0021290:85214-85233 | Msa1389690:intergenic | 30.0% | |
| ATTTGTTCAACAATGTGCTT+TGG | + | tig0021290:85216-85235 | Msa1389690:CDS | 30.0% | |
| TTGCTAGAAATAGAACATGA+AGG | - | tig0021290:85280-85299 | Msa1389690:intergenic | 30.0% | |
| ACCAAAATATTGCATTCACA+TGG | + | tig0021290:85647-85666 | Msa1389690:intron | 30.0% | |
| ATTCAGGATGTTCATGAAAT+AGG | - | tig0021290:85737-85756 | Msa1389690:intergenic | 30.0% | |
| TATGCACAAAGATACTTACA+AGG | - | tig0021290:85914-85933 | Msa1389690:intergenic | 30.0% | |
| TGATACAGTAAGTCTTTACA+TGG | - | tig0021290:85959-85978 | Msa1389690:intergenic | 30.0% | |
| ! | TTATTTCTTAGGTGGATGAA+AGG | + | tig0021290:86155-86174 | Msa1389690:intron | 30.0% |
| TATTTCTTAGGTGGATGAAA+GGG | + | tig0021290:86156-86175 | Msa1389690:intron | 30.0% | |
| !! | TTCTTTAGAGCAATATCACA+AGG | - | tig0021290:86307-86326 | Msa1389690:intergenic | 30.0% |
| AGTTTCAAATTCCTGTAGAA+TGG | + | tig0021290:86492-86511 | Msa1389690:CDS | 30.0% | |
| !! | TGATAATGGAATTATTGGCA+AGG | + | tig0021290:86520-86539 | Msa1389690:CDS | 30.0% |
| ATTGGCAAGGTATACTATAA+TGG | + | tig0021290:86533-86552 | Msa1389690:intron | 30.0% | |
| TGATCTATTAAGGATTATGC+TGG | + | tig0021290:86742-86761 | Msa1389690:intron | 30.0% | |
| !!! | TTTTTGAAGTTCCTAGAAGA+CGG | - | tig0021290:86786-86805 | Msa1389690:intergenic | 30.0% |
| ! | TGACTTTGTTTGAACTTCAA+TGG | - | tig0021290:86938-86957 | Msa1389690:intergenic | 30.0% |
| ! | GAAGAAACATCGATTAACAA+TGG | - | tig0021290:87089-87108 | Msa1389690:intergenic | 30.0% |
| ! | TGTTTATTTCTTAGGCTGTT+CGG | - | tig0021290:87204-87223 | Msa1389690:intergenic | 30.0% |
| TGATTCTTCTTGATGCAATT+TGG | - | tig0021290:87471-87490 | Msa1389690:intergenic | 30.0% | |
| ! | GATTCAGGAATTTTATGTTG+TGG | - | tig0021290:87600-87619 | Msa1389690:intergenic | 30.0% |
| ! | TATTTGTTAATGCAGTTTGC+AGG | + | tig0021290:87664-87683 | Msa1389690:intron | 30.0% |
| TGTAATGCAATCATAGTCTA+TGG | - | tig0021290:87799-87818 | Msa1389690:intergenic | 30.0% | |
| ! | TCTATGATTGCACTACATTT+TGG | + | tig0021290:87862-87881 | Msa1389690:three_prime_UTR | 30.0% |
| GTATATTAGATATAACTGGG+GGG | + | tig0021290:87911-87930 | Msa1389690:three_prime_UTR | 30.0% | |
| TATATTAGATATAACTGGGG+GGG | + | tig0021290:87912-87931 | Msa1389690:three_prime_UTR | 30.0% | |
| !!! | GTAAGAGGTTTTTTTCTGTG+AGG | - | tig0021290:82561-82580 | Msa0792880:intergenic | 35.0% |
| AACAACAATGTTGGATTTGG+GGG | - | tig0021290:82606-82625 | Msa0792880:intergenic | 35.0% | |
| GAACAACAATGTTGGATTTG+GGG | - | tig0021290:82607-82626 | Msa0792880:intergenic | 35.0% | |
| CAGAACAACAATGTTGGATT+TGG | - | tig0021290:82609-82628 | Msa0792880:intergenic | 35.0% | |
| !! | TTTGTTGTTTGAAGCTTTGG+TGG | - | tig0021290:82768-82787 | Msa1389690:intergenic | 35.0% |
| CATTCAAAACCAAGGTTATG+GGG | + | tig0021290:82813-82832 | Msa1389690:CDS | 35.0% | |
| ! | CAAAAGGGTTAACGTTTTTC+TGG | - | tig0021290:82941-82960 | Msa1389690:intergenic | 35.0% |
| TTGAATGAGGTGGAACAAAA+GGG | - | tig0021290:82956-82975 | Msa1389690:intergenic | 35.0% | |
| ! | GATCTTTTCACTCTTGAATG+AGG | - | tig0021290:82969-82988 | Msa1389690:intergenic | 35.0% |
| AAGAGTGAAAAGATCGTTGA+TGG | + | tig0021290:82974-82993 | Msa1389690:CDS | 35.0% | |
| AGAGTGAAAAGATCGTTGAT+GGG | + | tig0021290:82975-82994 | Msa1389690:CDS | 35.0% | |
| !! | AAGCTTGTTACAAGAGTCTA+AGG | + | tig0021290:83091-83110 | Msa1389690:CDS | 35.0% |
| AGAAAAGGAACCTTACTTGT+AGG | + | tig0021290:83354-83373 | Msa1389690:CDS | 35.0% | |
| TAGAAGAAAGCCTACAAGTA+AGG | - | tig0021290:83367-83386 | Msa1389690:intergenic | 35.0% | |
| TACTTGTAGGCTTTCTTCTA+TGG | + | tig0021290:83367-83386 | Msa1389690:CDS | 35.0% | |
| !! | TTGTTCTGAAAACTCTTCTG+AGG | + | tig0021290:83403-83422 | Msa1389690:CDS | 35.0% |
| !! | GATATGAATAGGGCTTTGTT+TGG | + | tig0021290:83506-83525 | Msa1389690:intron | 35.0% |
| GGCTTATTTGAGCTTATCTA+CGG | - | tig0021290:83736-83755 | Msa1389690:intergenic | 35.0% | |
| ! | TATTAGTTTCGGAGAGCTTA+TGG | - | tig0021290:83946-83965 | Msa1389690:intergenic | 35.0% |
| TCCGAAACTAATAATCTCAC+AGG | + | tig0021290:83953-83972 | Msa1389690:intron | 35.0% | |
| TGTTGTTGCAAACAATTTCC+AGG | + | tig0021290:84065-84084 | Msa1389690:intron | 35.0% | |
| ! | GCTAGAAGTTGATCAAAACT+GGG | - | tig0021290:84306-84325 | Msa1389690:intergenic | 35.0% |
| ! | AGCTAGAAGTTGATCAAAAC+TGG | - | tig0021290:84307-84326 | Msa1389690:intergenic | 35.0% |
| ACAAACGAGCAGATTAAATG+AGG | + | tig0021290:84763-84782 | Msa1389690:CDS | 35.0% | |
| AGTTCTTTCTCTGATCAATG+TGG | + | tig0021290:84917-84936 | Msa1389690:CDS | 35.0% | |
| !!! | CTAGTTATTGGCCACTTTTT+CGG | - | tig0021290:84974-84993 | Msa1389690:intergenic | 35.0% |
| TGTTGAACAAATAACGGCAT+TGG | - | tig0021290:85208-85227 | Msa1389690:intergenic | 35.0% | |
| GAAATAGAACATGAAGGTCT+TGG | - | tig0021290:85274-85293 | Msa1389690:intergenic | 35.0% | |
| ! | TTTTGCATCTAGAGGTAACA+CGG | + | tig0021290:85381-85400 | Msa1389690:CDS | 35.0% |
| AATCTCTCTTCATGAGTGAA+TGG | - | tig0021290:85444-85463 | Msa1389690:intergenic | 35.0% | |
| TCATGAAGAGAGATTCTAGA+AGG | + | tig0021290:85449-85468 | Msa1389690:CDS | 35.0% | |
| ! | CATGAAGAGAGATTCTAGAA+GGG | + | tig0021290:85450-85469 | Msa1389690:CDS | 35.0% |
| CAGCAAGTAAATGTGATGAA+CGG | - | tig0021290:85552-85571 | Msa1389690:intergenic | 35.0% | |
| ! | GCCATGTGAATGCAATATTT+TGG | - | tig0021290:85651-85670 | Msa1389690:intergenic | 35.0% |
| AAGGCAGATATTGAAACACA+AGG | + | tig0021290:85786-85805 | Msa1389690:CDS | 35.0% | |
| TGAGAACATAGATGATGTAG+TGG | + | tig0021290:85854-85873 | Msa1389690:CDS | 35.0% | |
| !! | CTGTCCTTAAGCATTTTGAT+TGG | + | tig0021290:86179-86198 | Msa1389690:CDS | 35.0% |
| ACATTAAGAGAAGCAGCATT+TGG | + | tig0021290:86220-86239 | Msa1389690:CDS | 35.0% | |
| TTCACTGATGAGAAATTGCA+AGG | + | tig0021290:86469-86488 | Msa1389690:CDS | 35.0% | |
| TTATCAAGCATCCATTCTAC+AGG | - | tig0021290:86506-86525 | Msa1389690:intergenic | 35.0% | |
| GTAGAATGGATGCTTGATAA+TGG | + | tig0021290:86506-86525 | Msa1389690:CDS | 35.0% | |
| !! | TGGCATTGATGAATATGTGA+AGG | + | tig0021290:86553-86572 | Msa1389690:intron | 35.0% |
| ATTTGACAAAGATCCTGCAA+TGG | + | tig0021290:86960-86979 | Msa1389690:CDS | 35.0% | |
| !! | AGATCCTGCAATGGATTATA+TGG | + | tig0021290:86969-86988 | Msa1389690:CDS | 35.0% |
| AGAACCATATAATCCATTGC+AGG | - | tig0021290:86976-86995 | Msa1389690:intergenic | 35.0% | |
| ! | ATGGATTATATGGTTCTCCA+AGG | + | tig0021290:86979-86998 | Msa1389690:CDS | 35.0% |
| ATTTGCTTTCAGAATCCATC+AGG | + | tig0021290:87008-87027 | Msa1389690:CDS | 35.0% | |
| ATTATGTGGGAAATACCTGA+TGG | - | tig0021290:87026-87045 | Msa1389690:intergenic | 35.0% | |
| !! | CTTTGTCCATGCTTTTAAGT+TGG | + | tig0021290:87058-87077 | Msa1389690:intron | 35.0% |
| ! | GAAACATCGATTAACAATGG+AGG | - | tig0021290:87086-87105 | Msa1389690:intergenic | 35.0% |
| !! | TCCTATTGAGTATTGACCAA+GGG | + | tig0021290:87226-87245 | Msa1389690:intron | 35.0% |
| TAATAATGTAGATCTGCCCT+TGG | - | tig0021290:87245-87264 | Msa1389690:intergenic | 35.0% | |
| GGGCAGATCTACATTATTAT+AGG | + | tig0021290:87246-87265 | Msa1389690:intron | 35.0% | |
| GTTCATGGTTCAGTTAAAGT+AGG | + | tig0021290:87347-87366 | Msa1389690:intron | 35.0% | |
| ! | AGGAATTTTATGTTGTGGCT+AGG | - | tig0021290:87595-87614 | Msa1389690:intergenic | 35.0% |
| AGAAACAATGCATGCATTTG+AGG | + | tig0021290:87699-87718 | Msa1389690:CDS | 35.0% | |
| ! | CATTTTTCATAGGTGCAATC+TGG | + | tig0021290:87817-87836 | Msa1389690:three_prime_UTR | 35.0% |
| CCTTCATACTGAAACACTTG+TGG | - | tig0021290:82680-82699 | Msa0792880:intergenic | 40.0% | |
| CCACAAGTGTTTCAGTATGA+AGG | + | tig0021290:82677-82696 | Msa1389690:exon | 40.0% | |
| CTTGAATGAGGTGGAACAAA+AGG | - | tig0021290:82957-82976 | Msa1389690:intergenic | 40.0% | |
| ! | CTTTTCACTCTTGAATGAGG+TGG | - | tig0021290:82966-82985 | Msa1389690:intergenic | 40.0% |
| ! | CTATGAGTTGGAAAAGCATG+TGG | - | tig0021290:83026-83045 | Msa1389690:intergenic | 40.0% |
| ! | CACATGCTTTTCCAACTCAT+AGG | + | tig0021290:83024-83043 | Msa1389690:CDS | 40.0% |
| GAAGATTGTCTCCTATGAGT+TGG | - | tig0021290:83038-83057 | Msa1389690:intergenic | 40.0% | |
| !! | AACTGATTTGTTCACGGAGT+TGG | + | tig0021290:83058-83077 | Msa1389690:CDS | 40.0% |
| AAATGGCTTATCCGAGCAAT+TGG | + | tig0021290:83214-83233 | Msa1389690:CDS | 40.0% | |
| ACTCAATGCAACCAATTGCT+CGG | - | tig0021290:83228-83247 | Msa1389690:intergenic | 40.0% | |
| AGCAATTGGTTGCATTGAGT+AGG | + | tig0021290:83228-83247 | Msa1389690:CDS | 40.0% | |
| GGAAAGACAAGAGGAAGATA+AGG | + | tig0021290:83262-83281 | Msa1389690:CDS | 40.0% | |
| AGACAAGAGGAAGATAAGGA+TGG | + | tig0021290:83266-83285 | Msa1389690:CDS | 40.0% | |
| TTGAAGTTGTTGAGCTGAGA+AGG | + | tig0021290:83309-83328 | Msa1389690:CDS | 40.0% | |
| TGAGCTGAGAAGGTTGAATA+AGG | + | tig0021290:83319-83338 | Msa1389690:CDS | 40.0% | |
| AGGAGTTGCATATGCAGAAA+AGG | + | tig0021290:83339-83358 | Msa1389690:CDS | 40.0% | |
| ! | TTTCTCATGGGTTGTTGGAT+TGG | + | tig0021290:83476-83495 | Msa1389690:intron | 40.0% |
| ! | ATCAAGGGCATGTTTGGAAT+TGG | - | tig0021290:83762-83781 | Msa1389690:intergenic | 40.0% |
| ATAAGCGTGCACTTGATCAA+GGG | - | tig0021290:83777-83796 | Msa1389690:intergenic | 40.0% | |
| TATAAGCGTGCACTTGATCA+AGG | - | tig0021290:83778-83797 | Msa1389690:intergenic | 40.0% | |
| TTTCGGAGAGCTTATGGAAA+AGG | - | tig0021290:83940-83959 | Msa1389690:intergenic | 40.0% | |
| TCACAGGTACTTATGCCAAT+AGG | + | tig0021290:83969-83988 | Msa1389690:intron | 40.0% | |
| AGCTAATCCAAACAATTCCG+AGG | + | tig0021290:84004-84023 | Msa1389690:intron | 40.0% | |
| ! | TCCACACTGCCATTTAACTT+AGG | + | tig0021290:84532-84551 | Msa1389690:intron | 40.0% |
| ACCTAAGTTAAATGGCAGTG+TGG | - | tig0021290:84536-84555 | Msa1389690:intergenic | 40.0% | |
| ! | TGTTGCCAAATTTAAAGCCG+AGG | + | tig0021290:84688-84707 | Msa1389690:CDS | 40.0% |
| !! | TGATGCCTCGGCTTTAAATT+TGG | - | tig0021290:84696-84715 | Msa1389690:intergenic | 40.0% |
| AACCTTCTACTTGTTTGCTC+AGG | - | tig0021290:84742-84761 | Msa1389690:intergenic | 40.0% | |
| AACGAGCAGATTAAATGAGG+TGG | + | tig0021290:84766-84785 | Msa1389690:CDS | 40.0% | |
| CGAATTCACCCATCTCAAAT+AGG | - | tig0021290:84801-84820 | Msa1389690:intergenic | 40.0% | |
| TGCTACTCACAACAGATTGA+GGG | - | tig0021290:84883-84902 | Msa1389690:intergenic | 40.0% | |
| TGGTTAAGAAGCCGAAAAAG+TGG | + | tig0021290:84960-84979 | Msa1389690:CDS | 40.0% | |
| ! | TTGGATTGAATCGATTTCGG+AGG | + | tig0021290:85048-85067 | Msa1389690:CDS | 40.0% |
| ! | TGGATTGAATCGATTTCGGA+GGG | + | tig0021290:85049-85068 | Msa1389690:CDS | 40.0% |
| !! | TAGTGGTTCTAATAGCTCAG+AGG | + | tig0021290:85096-85115 | Msa1389690:CDS | 40.0% |
| TTCTAATAGCTCAGAGGAAG+AGG | + | tig0021290:85102-85121 | Msa1389690:CDS | 40.0% | |
| !! | AACAATGTGCTTTGGAGAAG+AGG | + | tig0021290:85224-85243 | Msa1389690:CDS | 40.0% |
| !! | ACAATGTGCTTTGGAGAAGA+GGG | + | tig0021290:85225-85244 | Msa1389690:CDS | 40.0% |
| ATAGAACATGAAGGTCTTGG+AGG | - | tig0021290:85271-85290 | Msa1389690:intergenic | 40.0% | |
| CTAGATGCAAAACTCATAGG+AGG | - | tig0021290:85373-85392 | Msa1389690:intergenic | 40.0% | |
| CCTCTAGATGCAAAACTCAT+AGG | - | tig0021290:85376-85395 | Msa1389690:intergenic | 40.0% | |
| ! | CCTATGAGTTTTGCATCTAG+AGG | + | tig0021290:85373-85392 | Msa1389690:CDS | 40.0% |
| TCTAGAAGGGATTCTTCAAG+TGG | + | tig0021290:85463-85482 | Msa1389690:CDS | 40.0% | |
| ATGTAGTGGCATTTGTGAAG+TGG | + | tig0021290:85868-85887 | Msa1389690:CDS | 40.0% | |
| CTGGCCAATCAAAATGCTTA+AGG | - | tig0021290:86186-86205 | Msa1389690:intergenic | 40.0% | |
| AATGTGTCAGCTTTCTTCTC+TGG | - | tig0021290:86205-86224 | Msa1389690:intergenic | 40.0% | |
| ATCAGAAGTTTCCTCCTACA+AGG | + | tig0021290:86267-86286 | Msa1389690:CDS | 40.0% | |
| GTTTGTGTTTCCCTGTAGAA+TGG | + | tig0021290:86412-86431 | Msa1389690:intron | 40.0% | |
| TGTTGCATTACTATGAGAGC+AGG | + | tig0021290:86597-86616 | Msa1389690:intron | 40.0% | |
| TGAAAGCAAATCTCACTCCT+TGG | - | tig0021290:86999-87018 | Msa1389690:intergenic | 40.0% | |
| ! | CTGTTCGGTGATTCTAGAAA+AGG | - | tig0021290:87189-87208 | Msa1389690:intergenic | 40.0% |
| !! | GTCCTATTGAGTATTGACCA+AGG | + | tig0021290:87225-87244 | Msa1389690:intron | 40.0% |
| ACCTACGATTGTTCACGAAT+CGG | + | tig0021290:87279-87298 | Msa1389690:intron | 40.0% | |
| ACTGAACCATGAACAATCCT+AGG | - | tig0021290:87341-87360 | Msa1389690:intergenic | 40.0% | |
| !!! | TTTTGGTGCGGTTGGTTTAA+CGG | + | tig0021290:87539-87558 | Msa1389690:intron | 40.0% |
| TTGTTAATGCAGTTTGCAGG+AGG | + | tig0021290:87667-87686 | Msa1389690:intron | 40.0% | |
| TGTTAATGCAGTTTGCAGGA+GGG | + | tig0021290:87668-87687 | Msa1389690:intron | 40.0% | |
| TAGTCTATGGCTTACTGAGA+TGG | - | tig0021290:87786-87805 | Msa1389690:intergenic | 40.0% | |
| TTCATAGGTGCAATCTGGAT+TGG | + | tig0021290:87822-87841 | Msa1389690:three_prime_UTR | 40.0% | |
| !! | ACATTTTGGTCGCAAGAGAT+TGG | + | tig0021290:87876-87895 | Msa1389690:three_prime_UTR | 40.0% |
| TGGGGTGCACACATTGTAAA+AGG | + | tig0021290:82831-82850 | Msa1389690:CDS | 45.0% | |
| CTGGTTAGTAACAACATCCG+AGG | - | tig0021290:82922-82941 | Msa1389690:intergenic | 45.0% | |
| ! | GGGTGATTTGTCATGTTCTC+AGG | + | tig0021290:82995-83014 | Msa1389690:CDS | 45.0% |
| ACAAGAGTCTAAGGAGAGAG+AGG | + | tig0021290:83100-83119 | Msa1389690:CDS | 45.0% | |
| ! | GGCTAAGTTGAATGCTGAGT+TGG | + | tig0021290:83121-83140 | Msa1389690:CDS | 45.0% |
| !! | ATGCTGAGTTGGTTGAGTGT+AGG | + | tig0021290:83132-83151 | Msa1389690:CDS | 45.0% |
| GTGTAGGAAGAATCAGAGTG+AGG | + | tig0021290:83148-83167 | Msa1389690:CDS | 45.0% | |
| ATTGAGTAGGAGCTGTGGAT+TGG | + | tig0021290:83241-83260 | Msa1389690:CDS | 45.0% | |
| !! | CTGTGGATTGGAAAGACAAG+AGG | + | tig0021290:83253-83272 | Msa1389690:CDS | 45.0% |
| TAAACAACTTGGGGCCTGTT+TGG | + | tig0021290:83530-83549 | Msa1389690:intron | 45.0% | |
| ! | GGGCATGTTTGGAATTGGAT+TGG | - | tig0021290:83757-83776 | Msa1389690:intergenic | 45.0% |
| ! | CACTTGATCAAGGGCATGTT+TGG | - | tig0021290:83768-83787 | Msa1389690:intergenic | 45.0% |
| ! | AAGCTTTATCCCACTGAGTG+GGG | - | tig0021290:84039-84058 | Msa1389690:intergenic | 45.0% |
| ! | CAAGCTTTATCCCACTGAGT+GGG | - | tig0021290:84040-84059 | Msa1389690:intergenic | 45.0% |
| !! | GATCAACTTCTAGCTCGTGA+AGG | + | tig0021290:84312-84331 | Msa1389690:intron | 45.0% |
| GACCTGAGCAAACAAGTAGA+AGG | + | tig0021290:84737-84756 | Msa1389690:CDS | 45.0% | |
| GAGCAGATTAAATGAGGTGG+AGG | + | tig0021290:84769-84788 | Msa1389690:CDS | 45.0% | |
| ! | AGGAGCTAGCCTATTTGAGA+TGG | + | tig0021290:84789-84808 | Msa1389690:CDS | 45.0% |
| ! | GGAGCTAGCCTATTTGAGAT+GGG | + | tig0021290:84790-84809 | Msa1389690:CDS | 45.0% |
| CTGCTACTCACAACAGATTG+AGG | - | tig0021290:84884-84903 | Msa1389690:intergenic | 45.0% | |
| CAATCTGTTGTGAGTAGCAG+TGG | + | tig0021290:84884-84903 | Msa1389690:CDS | 45.0% | |
| GATGCAAAACTCATAGGAGG+TGG | - | tig0021290:85370-85389 | Msa1389690:intergenic | 45.0% | |
| AGAAGGGATTCTTCAAGTGG+AGG | + | tig0021290:85466-85485 | Msa1389690:CDS | 45.0% | |
| CTACGAACATCTGCAACATC+TGG | - | tig0021290:85505-85524 | Msa1389690:intergenic | 45.0% | |
| GATGTTCGTAGCAGCATGAT+TGG | + | tig0021290:85514-85533 | Msa1389690:CDS | 45.0% | |
| GATTAGAGAGGTGAACGATG+CGG | + | tig0021290:85827-85846 | Msa1389690:CDS | 45.0% | |
| AAGTGGCTCGATGATGAACT+TGG | + | tig0021290:85885-85904 | Msa1389690:CDS | 45.0% | |
| GCAATATCACAAGGTAGCCT+GGG | - | tig0021290:86298-86317 | Msa1389690:intergenic | 45.0% | |
| AGCAATATCACAAGGTAGCC+TGG | - | tig0021290:86299-86318 | Msa1389690:intergenic | 45.0% | |
| TCCCTGTAGAATGGAACGTA+CGG | + | tig0021290:86421-86440 | Msa1389690:intron | 45.0% | |
| ACCGTACGTTCCATTCTACA+GGG | - | tig0021290:86425-86444 | Msa1389690:intergenic | 45.0% | |
| AACCGTACGTTCCATTCTAC+AGG | - | tig0021290:86426-86445 | Msa1389690:intergenic | 45.0% | |
| GTATCCTATGACCGTCTTCT+AGG | + | tig0021290:86772-86791 | Msa1389690:intron | 45.0% | |
| AGTTCCTAGAAGACGGTCAT+AGG | - | tig0021290:86779-86798 | Msa1389690:intergenic | 45.0% | |
| ! | GAGGCACCAACTTAAAAGCA+TGG | - | tig0021290:87067-87086 | Msa1389690:intergenic | 45.0% |
| ! | CGGTGATTCTAGAAAAGGTC+CGG | - | tig0021290:87184-87203 | Msa1389690:intergenic | 45.0% |
| GCCCTTGGTCAATACTCAAT+AGG | - | tig0021290:87230-87249 | Msa1389690:intergenic | 45.0% | |
| TTCGTGAACAATCGTAGGTG+AGG | - | tig0021290:87278-87297 | Msa1389690:intergenic | 45.0% | |
| !! | ACCGATTCGTGAACAATCGT+AGG | - | tig0021290:87283-87302 | Msa1389690:intergenic | 45.0% |
| !!! | ATATAACTGGGGGGGCATTT+TGG | + | tig0021290:87920-87939 | Msa1389690:three_prime_UTR | 45.0% |
| !!! | TATAACTGGGGGGGCATTTT+GGG | + | tig0021290:87921-87940 | Msa1389690:three_prime_UTR | 45.0% |
| !! | TTAAAAAAAAATATGAAAAA+AGG | + | tig0021290:84412-84431 | Msa1389690:intron | 5.0% |
| !! | TAAAAAAAAATATGAAAAAA+GGG | + | tig0021290:84413-84432 | Msa1389690:intron | 5.0% |
| !!! | TTTAACAATTTTTTTTTAAA+TGG | - | tig0021290:87448-87467 | Msa1389690:intergenic | 5.0% |
| ATGTGTGCACCCCATAACCT+TGG | - | tig0021290:82825-82844 | Msa1389690:intergenic | 50.0% | |
| GTTGCATTGAGTAGGAGCTG+TGG | + | tig0021290:83236-83255 | Msa1389690:CDS | 50.0% | |
| GGCTACACCTCGGAATTGTT+TGG | - | tig0021290:84014-84033 | Msa1389690:intergenic | 50.0% | |
| TTTATCCCACTGAGTGGGGT+CGG | - | tig0021290:84035-84054 | Msa1389690:intergenic | 50.0% | |
| ! | CCAAGCTTTATCCCACTGAG+TGG | - | tig0021290:84041-84060 | Msa1389690:intergenic | 50.0% |
| CCACTCAGTGGGATAAAGCT+TGG | + | tig0021290:84038-84057 | Msa1389690:intron | 50.0% | |
| !! | CTTTGGAGAAGAGGGCGTTA+AGG | + | tig0021290:85233-85252 | Msa1389690:CDS | 50.0% |
| ! | GAAGGTCTTGGAGGTGGATT+AGG | - | tig0021290:85262-85281 | Msa1389690:intergenic | 50.0% |
| GAACATGAAGGTCTTGGAGG+TGG | - | tig0021290:85268-85287 | Msa1389690:intergenic | 50.0% | |
| ! | AAACTCATAGGAGGTGGTGG+CGG | - | tig0021290:85364-85383 | Msa1389690:intergenic | 50.0% |
| GCAAAACTCATAGGAGGTGG+TGG | - | tig0021290:85367-85386 | Msa1389690:intergenic | 50.0% | |
| ATCTAGAGGTAACACGGCGA+TGG | + | tig0021290:85387-85406 | Msa1389690:CDS | 50.0% | |
| GGTAAAACGAGCACCACAAG+TGG | + | tig0021290:85408-85427 | Msa1389690:CDS | 50.0% | |
| AAAACGAGCACCACAAGTGG+TGG | + | tig0021290:85411-85430 | Msa1389690:CDS | 50.0% | |
| TGGTACAGTTCCACCACTTG+TGG | - | tig0021290:85424-85443 | Msa1389690:intergenic | 50.0% | |
| TAGCCTGGGATCATCCTTGT+AGG | - | tig0021290:86284-86303 | Msa1389690:intergenic | 50.0% | |
| TTTATACGCTTCTCCGCACG+AGG | + | tig0021290:86444-86463 | Msa1389690:CDS | 50.0% | |
| TTATACGCTTCTCCGCACGA+GGG | + | tig0021290:86445-86464 | Msa1389690:CDS | 50.0% | |
| TCATCAGTGAATCCCTCGTG+CGG | - | tig0021290:86460-86479 | Msa1389690:intergenic | 50.0% | |
| TCACAACCGTGTCATGCTAC+CGG | + | tig0021290:87162-87181 | Msa1389690:intron | 50.0% | |
| AAAGGTCCGGTAGCATGACA+CGG | - | tig0021290:87171-87190 | Msa1389690:intergenic | 50.0% | |
| ACCATGAACAATCCTAGGCG+AGG | - | tig0021290:87336-87355 | Msa1389690:intergenic | 50.0% | |
| GGCTTACTGAGATGGTAAGC+TGG | - | tig0021290:87778-87797 | Msa1389690:intergenic | 50.0% | |
| AAGCCTGAGCAGTGATGCCT+CGG | - | tig0021290:84708-84727 | Msa1389690:intergenic | 55.0% | |
| CCTGGGATCATCCTTGTAGG+AGG | - | tig0021290:86281-86300 | Msa1389690:intergenic | 55.0% | |
| CCTCCTACAAGGATGATCCC+AGG | + | tig0021290:86278-86297 | Msa1389690:CDS | 55.0% | |
| ! | ACAAGGGTTTTGCCTCGCCT+AGG | + | tig0021290:87321-87340 | Msa1389690:intron | 55.0% |
| GCCTCGCCTAGGATTGTTCA+TGG | + | tig0021290:87332-87351 | Msa1389690:intron | 55.0% | |
| TGTAGCCGACCCCACTCAGT+GGG | + | tig0021290:84027-84046 | Msa1389690:intron | 60.0% | |
| ! | AAGCCGAGGCATCACTGCTC+AGG | + | tig0021290:84702-84721 | Msa1389690:CDS | 60.0% |
| GAGTGGGGTCGGCTACACCT+CGG | - | tig0021290:84024-84043 | Msa1389690:intergenic | 65.0% | |
| GTGTAGCCGACCCCACTCAG+TGG | + | tig0021290:84026-84045 | Msa1389690:intron | 65.0% | |
| !! | ATAGGAGGTGGTGGCGGAGG+TGG | - | tig0021290:85358-85377 | Msa1389690:intergenic | 65.0% |
| !! | CTCATAGGAGGTGGTGGCGG+AGG | - | tig0021290:85361-85380 | Msa1389690:intergenic | 65.0% |
| GGCGGAGGTGGAGGTGGAGG+AGG | - | tig0021290:85346-85365 | Msa1389690:intergenic | 75.0% | |
| !! | GGTGGCGGAGGTGGAGGTGG+AGG | - | tig0021290:85349-85368 | Msa1389690:intergenic | 75.0% |
| !! | GGTGGTGGCGGAGGTGGAGG+TGG | - | tig0021290:85352-85371 | Msa1389690:intergenic | 75.0% |
| !! | GGAGGTGGTGGCGGAGGTGG+AGG | - | tig0021290:85355-85374 | Msa1389690:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021290 | gene | 82536 | 88084 | 82536 | ID=Msa1389690;Name=Msa1389690 |
| tig0021290 | mRNA | 82536 | 88084 | 82536 | ID=Msa1389690-mRNA-1;Parent=Msa1389690;Name=Msa1389690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=157|1|1|1|1|1|7|325|757 |
| tig0021290 | exon | 82536 | 83424 | 82536 | ID=Msa1389690-mRNA-1:exon:11724;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 84680 | 85570 | 84680 | ID=Msa1389690-mRNA-1:exon:11725;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 85783 | 85914 | 85783 | ID=Msa1389690-mRNA-1:exon:11726;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 86166 | 86347 | 86166 | ID=Msa1389690-mRNA-1:exon:11727;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 86430 | 86541 | 86430 | ID=Msa1389690-mRNA-1:exon:11728;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 86886 | 87029 | 86886 | ID=Msa1389690-mRNA-1:exon:11729;Parent=Msa1389690-mRNA-1 |
| tig0021290 | exon | 87679 | 88084 | 87679 | ID=Msa1389690-mRNA-1:exon:11730;Parent=Msa1389690-mRNA-1 |
| tig0021290 | five_prime_UTR | 82536 | 82692 | 82536 | ID=Msa1389690-mRNA-1:five_prime_utr;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 82693 | 83424 | 82693 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 84680 | 85570 | 84680 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 85783 | 85914 | 85783 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 86166 | 86347 | 86166 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 86430 | 86541 | 86430 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 86886 | 87029 | 86886 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | CDS | 87679 | 87759 | 87679 | ID=Msa1389690-mRNA-1:cds;Parent=Msa1389690-mRNA-1 |
| tig0021290 | three_prime_UTR | 87760 | 88084 | 87760 | ID=Msa1389690-mRNA-1:three_prime_utr;Parent=Msa1389690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
