Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190110 | XP_024632319.1 | 93.318 | 898 | 57 | 1 | 2 | 899 | 15 | 909 | 0.0 | 1646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190110 | sp|P0CB23|Y4862_ARATH | 44.527 | 402 | 219 | 2 | 4 | 402 | 16 | 416 | 1.82e-81 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190110 | Q2HVA4 | 93.318 | 898 | 57 | 1 | 2 | 899 | 15 | 909 | 0.0 | 1646 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0190110 | 0.801418 | 9.088488e-49 | -8.615850e-47 |
| Msa0016040 | Msa0190110 | 0.827193 | 1.791007e-54 | -8.615850e-47 |
| Msa0017950 | Msa0190110 | 0.810547 | 1.091980e-50 | -8.615850e-47 |
| Msa0030370 | Msa0190110 | 0.814162 | 1.772795e-51 | -8.615850e-47 |
| Msa0035140 | Msa0190110 | 0.809553 | 1.787594e-50 | -8.615850e-47 |
| Msa0048510 | Msa0190110 | 0.851543 | 8.286103e-61 | -8.615850e-47 |
| Msa0052480 | Msa0190110 | 0.810403 | 1.172790e-50 | -8.615850e-47 |
| Msa0053230 | Msa0190110 | 0.828513 | 8.623580e-55 | -8.615850e-47 |
| Msa0065020 | Msa0190110 | 0.810681 | 1.021156e-50 | -8.615850e-47 |
| Msa0077560 | Msa0190110 | 0.830226 | 3.309334e-55 | -8.615850e-47 |
| Msa0081980 | Msa0190110 | 0.827458 | 1.547179e-54 | -8.615850e-47 |
| Msa0082020 | Msa0190110 | 0.812024 | 5.218740e-51 | -8.615850e-47 |
| Msa0094780 | Msa0190110 | 0.852800 | 3.639133e-61 | -8.615850e-47 |
| Msa0098520 | Msa0190110 | 0.820402 | 6.990833e-53 | -8.615850e-47 |
| Msa0098730 | Msa0190110 | 0.837090 | 6.380635e-57 | -8.615850e-47 |
| Msa0121330 | Msa0190110 | 0.800578 | 1.349598e-48 | -8.615850e-47 |
| Msa0128460 | Msa0190110 | 0.808815 | 2.572407e-50 | -8.615850e-47 |
| Msa0133280 | Msa0190110 | 0.809150 | 2.181347e-50 | -8.615850e-47 |
| Msa0140280 | Msa0190110 | 0.817001 | 4.135862e-52 | -8.615850e-47 |
| Msa0143670 | Msa0190110 | 0.805633 | 1.215075e-49 | -8.615850e-47 |
| Msa0173810 | Msa0190110 | 0.805860 | 1.088659e-49 | -8.615850e-47 |
| Msa0174290 | Msa0190110 | 0.816386 | 5.678830e-52 | -8.615850e-47 |
| Msa0190110 | Msa0190570 | 0.824576 | 7.490690e-54 | -8.615850e-47 |
| Msa0190110 | Msa0200050 | 0.811735 | 6.035061e-51 | -8.615850e-47 |
| Msa0190110 | Msa0209980 | 0.812613 | 3.881946e-51 | -8.615850e-47 |
| Msa0190110 | Msa0213030 | 0.848024 | 7.977479e-60 | -8.615850e-47 |
| Msa0190110 | Msa0225860 | 0.840778 | 7.083305e-58 | -8.615850e-47 |
| Msa0190110 | Msa0242590 | 0.807124 | 5.892432e-50 | -8.615850e-47 |
| Msa0190110 | Msa0260510 | 0.836477 | 9.145272e-57 | -8.615850e-47 |
| Msa0190110 | Msa0269210 | 0.817733 | 2.828839e-52 | -8.615850e-47 |
| Msa0190110 | Msa0271880 | 0.940816 | 1.219596e-100 | -8.615850e-47 |
| Msa0190110 | Msa0298470 | 0.860363 | 2.175771e-63 | -8.615850e-47 |
| Msa0190110 | Msa0310850 | 0.937504 | 3.110277e-98 | -8.615850e-47 |
| Msa0190110 | Msa0330380 | 0.837411 | 5.281302e-57 | -8.615850e-47 |
| Msa0190110 | Msa0340500 | 0.805406 | 1.355663e-49 | -8.615850e-47 |
| Msa0190110 | Msa0361910 | 0.829045 | 6.412118e-55 | -8.615850e-47 |
| Msa0190110 | Msa0367150 | 0.830645 | 2.612853e-55 | -8.615850e-47 |
| Msa0190110 | Msa0373500 | 0.805371 | 1.378670e-49 | -8.615850e-47 |
| Msa0190110 | Msa0409830 | 0.809621 | 1.728519e-50 | -8.615850e-47 |
| Msa0190110 | Msa0419540 | 0.813690 | 2.253316e-51 | -8.615850e-47 |
| Msa0190110 | Msa0454560 | 0.800109 | 1.681418e-48 | -8.615850e-47 |
| Msa0190110 | Msa0459740 | 0.821434 | 4.047004e-53 | -8.615850e-47 |
| Msa0190110 | Msa0481890 | 0.849476 | 3.155133e-60 | -8.615850e-47 |
| Msa0190110 | Msa0483100 | 0.811210 | 7.844683e-51 | -8.615850e-47 |
| Msa0190110 | Msa0502510 | 0.810880 | 9.248298e-51 | -8.615850e-47 |
| Msa0190110 | Msa0531960 | 0.811025 | 8.605658e-51 | -8.615850e-47 |
| Msa0190110 | Msa0534720 | 0.841311 | 5.132758e-58 | -8.615850e-47 |
| Msa0190110 | Msa0567170 | 0.822499 | 2.293336e-53 | -8.615850e-47 |
| Msa0190110 | Msa0573850 | 0.803447 | 3.471840e-49 | -8.615850e-47 |
| Msa0190110 | Msa0580370 | 0.848235 | 6.973968e-60 | -8.615850e-47 |
| Msa0190110 | Msa0580810 | 0.802852 | 4.607681e-49 | -8.615850e-47 |
| Msa0190110 | Msa0581470 | 0.806958 | 6.389415e-50 | -8.615850e-47 |
| Msa0190110 | Msa0621710 | 0.836661 | 8.210920e-57 | -8.615850e-47 |
| Msa0190110 | Msa0624900 | 0.855291 | 6.961578e-62 | -8.615850e-47 |
| Msa0190110 | Msa0641990 | 0.804019 | 2.640512e-49 | -8.615850e-47 |
| Msa0190110 | Msa0658640 | 0.833625 | 4.789722e-56 | -8.615850e-47 |
| Msa0190110 | Msa0666700 | 0.843161 | 1.661071e-58 | -8.615850e-47 |
| Msa0190110 | Msa0670100 | 0.802440 | 5.605329e-49 | -8.615850e-47 |
| Msa0190110 | Msa0688910 | 0.805070 | 1.593944e-49 | -8.615850e-47 |
| Msa0190110 | Msa0702810 | 0.813345 | 2.683300e-51 | -8.615850e-47 |
| Msa0190110 | Msa0703600 | 0.816695 | 4.842370e-52 | -8.615850e-47 |
| Msa0190110 | Msa0709200 | 0.818102 | 2.335073e-52 | -8.615850e-47 |
| Msa0190110 | Msa0709440 | 0.849168 | 3.844215e-60 | -8.615850e-47 |
| Msa0190110 | Msa0709630 | 0.813296 | 2.750163e-51 | -8.615850e-47 |
| Msa0190110 | Msa0714790 | 0.812377 | 4.370715e-51 | -8.615850e-47 |
| Msa0190110 | Msa0735780 | 0.811579 | 6.524024e-51 | -8.615850e-47 |
| Msa0190110 | Msa0754430 | 0.801065 | 1.073671e-48 | -8.615850e-47 |
| Msa0190110 | Msa0756590 | 0.800426 | 1.449441e-48 | -8.615850e-47 |
| Msa0190110 | Msa0756820 | 0.807883 | 4.066928e-50 | -8.615850e-47 |
| Msa0190110 | Msa0761670 | 0.800477 | 1.415351e-48 | -8.615850e-47 |
| Msa0190110 | Msa0773630 | 0.834236 | 3.368140e-56 | -8.615850e-47 |
| Msa0190110 | Msa0795870 | 0.859741 | 3.354306e-63 | -8.615850e-47 |
| Msa0190110 | Msa0804000 | 0.802997 | 4.300901e-49 | -8.615850e-47 |
| Msa0190110 | Msa0824450 | 0.835594 | 1.531859e-56 | -8.615850e-47 |
| Msa0190110 | Msa0828970 | 0.816372 | 5.719858e-52 | -8.615850e-47 |
| Msa0190110 | Msa0833650 | 0.858913 | 5.940657e-63 | -8.615850e-47 |
| Msa0190110 | Msa0836150 | 0.800609 | 1.330287e-48 | -8.615850e-47 |
| Msa0190110 | Msa0842070 | 0.812228 | 4.712061e-51 | -8.615850e-47 |
| Msa0190110 | Msa0863620 | 0.823916 | 1.070338e-53 | -8.615850e-47 |
| Msa0190110 | Msa0878280 | 0.832843 | 7.500341e-56 | -8.615850e-47 |
| Msa0190110 | Msa0888790 | 0.808182 | 3.511552e-50 | -8.615850e-47 |
| Msa0190110 | Msa0915520 | 0.803659 | 3.136292e-49 | -8.615850e-47 |
| Msa0190110 | Msa0921000 | 0.810537 | 1.097517e-50 | -8.615850e-47 |
| Msa0190110 | Msa0931590 | 0.822465 | 2.334868e-53 | -8.615850e-47 |
| Msa0190110 | Msa0941170 | 0.800594 | 1.339160e-48 | -8.615850e-47 |
| Msa0190110 | Msa0966320 | 0.808010 | 3.821084e-50 | -8.615850e-47 |
| Msa0190110 | Msa0997920 | 0.815880 | 7.367274e-52 | -8.615850e-47 |
| Msa0190110 | Msa1037540 | 0.818551 | 1.847601e-52 | -8.615850e-47 |
| Msa0190110 | Msa1081390 | 0.811479 | 6.858171e-51 | -8.615850e-47 |
| Msa0190110 | Msa1082200 | 0.802124 | 6.509111e-49 | -8.615850e-47 |
| Msa0190110 | Msa1084530 | 0.845088 | 5.050740e-59 | -8.615850e-47 |
| Msa0190110 | Msa1094010 | 0.824589 | 7.437915e-54 | -8.615850e-47 |
| Msa0190110 | Msa1103990 | 0.806411 | 8.333058e-50 | -8.615850e-47 |
| Msa0190110 | Msa1116220 | 0.801856 | 7.391896e-49 | -8.615850e-47 |
| Msa0190110 | Msa1125820 | 0.847272 | 1.284503e-59 | -8.615850e-47 |
| Msa0190110 | Msa1125990 | 0.848829 | 4.774461e-60 | -8.615850e-47 |
| Msa0190110 | Msa1132840 | 0.852282 | 5.115094e-61 | -8.615850e-47 |
| Msa0190110 | Msa1171290 | 0.847861 | 8.847209e-60 | -8.615850e-47 |
| Msa0190110 | Msa1192570 | 0.856987 | 2.218631e-62 | -8.615850e-47 |
| Msa0190110 | Msa1200890 | 0.814041 | 1.884875e-51 | -8.615850e-47 |
| Msa0190110 | Msa1208950 | 0.837999 | 3.731751e-57 | -8.615850e-47 |
| Msa0190110 | Msa1215870 | 0.829029 | 6.467293e-55 | -8.615850e-47 |
| Msa0190110 | Msa1226520 | 0.831340 | 1.764435e-55 | -8.615850e-47 |
| Msa0190110 | Msa1228870 | 0.803304 | 3.716777e-49 | -8.615850e-47 |
| Msa0190110 | Msa1244240 | 0.814707 | 1.343138e-51 | -8.615850e-47 |
| Msa0190110 | Msa1307630 | 0.828381 | 9.278499e-55 | -8.615850e-47 |
| Msa0190110 | Msa1320670 | 0.811038 | 8.549139e-51 | -8.615850e-47 |
| Msa0190110 | Msa1343170 | 0.815064 | 1.119205e-51 | -8.615850e-47 |
| Msa0190110 | Msa1343180 | 0.804312 | 2.294257e-49 | -8.615850e-47 |
| Msa0190110 | Msa1380120 | 0.803101 | 4.094218e-49 | -8.615850e-47 |
| Msa0190110 | Msa1381180 | 0.813243 | 2.824397e-51 | -8.615850e-47 |
| Msa0190110 | Msa1384150 | 0.820787 | 5.702172e-53 | -8.615850e-47 |
| Msa0190110 | Msa1389690 | 0.813800 | 2.130753e-51 | -8.615850e-47 |
| Msa0190110 | Msa1392580 | 0.804864 | 1.760090e-49 | -8.615850e-47 |
| Msa0190110 | Msa1397400 | 0.833619 | 4.804930e-56 | -8.615850e-47 |
| Msa0190110 | Msa1420950 | 0.825326 | 4.982493e-54 | -8.615850e-47 |
| Msa0190110 | Msa1429070 | 0.830058 | 3.636205e-55 | -8.615850e-47 |
| Msa0190110 | Msa1440880 | 0.823515 | 1.328728e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190110 | MtrunA17_Chr2g0279621 | 93.318 | 898 | 57 | 1 | 2 | 899 | 15 | 909 | 0.0 | 1646 |
| Msa0190110 | MtrunA17_Chr8g0367551 | 34.218 | 678 | 371 | 10 | 2 | 628 | 14 | 667 | 2.22e-88 | 298 |
| Msa0190110 | MtrunA17_Chr5g0412231 | 27.859 | 682 | 379 | 19 | 175 | 841 | 75 | 658 | 8.14e-37 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0190110 | AT4G38062.1 | 44.527 | 402 | 219 | 2 | 4 | 402 | 16 | 416 | 1.85e-82 | 287 |
Find 133 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAATTTCTTGTTCTTTGT+TGG | 0.207774 | 2_1:+5562186 | None:intergenic |
| GCACCTTAAGTCGTTGTTAT+TGG | 0.215312 | 2_1:-5562962 | Msa0190110:CDS |
| ACAATCCCATTGAGATTCTT+TGG | 0.224840 | 2_1:+5562258 | None:intergenic |
| AGAAGTTTCCATCTCTTTAC+AGG | 0.229736 | 2_1:+5561679 | None:intergenic |
| AGTATCCTATCAAGAAATTC+AGG | 0.246636 | 2_1:-5561705 | Msa0190110:CDS |
| TGAAACTATAAAGCACTTTC+AGG | 0.248889 | 2_1:-5561294 | Msa0190110:CDS |
| CAAAGGAAGCCGAGAGATTT+AGG | 0.271291 | 2_1:-5561517 | Msa0190110:CDS |
| TTTGACACAAACTGCTTTAC+CGG | 0.280794 | 2_1:+5562042 | None:intergenic |
| TCAGCTGCAGATAGCTTTAC+TGG | 0.288042 | 2_1:-5561561 | Msa0190110:CDS |
| ATCTTCCTTGCAAATGAGTT+TGG | 0.288186 | 2_1:-5562704 | Msa0190110:CDS |
| TGCTGAGAGGGTGTTCAAAT+TGG | 0.308939 | 2_1:-5563082 | Msa0190110:CDS |
| AGCAGGAGGAAGATCTTCTT+TGG | 0.311555 | 2_1:-5561337 | Msa0190110:CDS |
| TTTCCATGGACTCTTGCTTC+AGG | 0.322376 | 2_1:+5561411 | None:intergenic |
| AGAAAGTAAGAGGAAGCTTT+TGG | 0.328142 | 2_1:-5562611 | Msa0190110:CDS |
| AATCCTTCTCCATCATTGTT+TGG | 0.334457 | 2_1:+5561474 | None:intergenic |
| AGATAGTTCATCATTCTTAC+TGG | 0.342720 | 2_1:+5561778 | None:intergenic |
| CTGTGCAAGATAAAATTAAA+TGG | 0.345099 | 2_1:-5562837 | Msa0190110:CDS |
| AAGTAATAGTGAGTTGGTTT+TGG | 0.354371 | 2_1:-5563055 | Msa0190110:CDS |
| TGAAAGAAAAGTTGCATTTG+AGG | 0.358411 | 2_1:-5561828 | Msa0190110:CDS |
| CCAACAAAGAACAAGAAATT+CGG | 0.361782 | 2_1:-5562186 | Msa0190110:CDS |
| GGTTCCCTGAATTTCTTGAT+AGG | 0.371601 | 2_1:+5561700 | None:intergenic |
| GTACATTGTGCATTTAAATT+CGG | 0.376734 | 2_1:-5563130 | Msa0190110:CDS |
| TACTGCTAGAAACAGTTGTT+TGG | 0.378369 | 2_1:-5563019 | Msa0190110:CDS |
| AGACAATTCTCTAAACAATA+TGG | 0.379124 | 2_1:-5561972 | Msa0190110:CDS |
| AAGCAGAACTCGAGAAGCTT+AGG | 0.382942 | 2_1:-5563335 | Msa0190110:intron |
| AAGATGGAAGCAGATGTTAT+TGG | 0.387513 | 2_1:-5562226 | Msa0190110:CDS |
| CGAGATGTGTAATCATGCTT+TGG | 0.387638 | 2_1:-5562641 | Msa0190110:CDS |
| GAGTACATCTATGACAAAAT+TGG | 0.399018 | 2_1:-5560861 | Msa0190110:CDS |
| TTCAATTCAAGTAGAAAAGT+TGG | 0.404711 | 2_1:-5561219 | Msa0190110:CDS |
| CGAACAAGATAATCAGGAAC+TGG | 0.408736 | 2_1:-5562410 | Msa0190110:CDS |
| AGAGACTCTTGTGAAGGAAA+TGG | 0.412634 | 2_1:-5562452 | Msa0190110:CDS |
| AGAAATGCTAAAAGATGAAA+TGG | 0.417820 | 2_1:-5561801 | Msa0190110:CDS |
| GGAAAAGGAGAGATCTTTGC+TGG | 0.425601 | 2_1:-5562737 | Msa0190110:CDS |
| TTCAATATGATTCTCTTCAA+TGG | 0.428669 | 2_1:+5562129 | None:intergenic |
| TCCCAACGAGTTTCTTAGCT+CGG | 0.428727 | 2_1:+5562480 | None:intergenic |
| TCTCCTCGAACAAGATAATC+AGG | 0.434623 | 2_1:-5562416 | Msa0190110:CDS |
| AGAGGATGTGATAATGCAAT+TGG | 0.440594 | 2_1:-5562875 | Msa0190110:CDS |
| AAATCATTCGGTACAGAAAC+CGG | 0.444880 | 2_1:-5562061 | Msa0190110:CDS |
| GATGCTTACTTCAAATCATT+CGG | 0.445673 | 2_1:-5562073 | Msa0190110:CDS |
| GTTCCTGATTATCTTGTTCG+AGG | 0.446067 | 2_1:+5562413 | None:intergenic |
| GAAGCAGTTTCAGTTATCAT+TGG | 0.450748 | 2_1:-5561030 | Msa0190110:CDS |
| GAACACAAGAATAATTAAAT+CGG | 0.451478 | 2_1:-5561126 | Msa0190110:CDS |
| AAGAATAATTAAATCGGAAT+CGG | 0.453567 | 2_1:-5561120 | Msa0190110:CDS |
| TCGGGAGCTTCAGATAGAAC+TGG | 0.455342 | 2_1:-5562167 | Msa0190110:CDS |
| AGATAGAAGAGTTGACTGTT+CGG | 0.460241 | 2_1:-5562519 | Msa0190110:CDS |
| GCAGAGATCAAGTTTGAGAA+TGG | 0.464186 | 2_1:-5560945 | Msa0190110:CDS |
| CAACAAAGAACAAGAAATTC+GGG | 0.466336 | 2_1:-5562185 | Msa0190110:CDS |
| TCGCAACAAGCTTAGAAAGT+TGG | 0.468239 | 2_1:-5562317 | Msa0190110:CDS |
| TCAAGTCCAAAGAATCTCAA+TGG | 0.470626 | 2_1:-5562264 | Msa0190110:CDS |
| TCAAGCTAGGTTTGCTGAGA+GGG | 0.471672 | 2_1:-5563094 | Msa0190110:CDS |
| TCTCTGCATTGTCAAGGATC+AGG | 0.476260 | 2_1:-5561603 | Msa0190110:CDS |
| GAGAGCTAAGCAAGCGAAGA+CGG | 0.476465 | 2_1:-5562908 | Msa0190110:CDS |
| GGATTCTCAGACAAGAACTT+TGG | 0.486530 | 2_1:-5562683 | Msa0190110:CDS |
| GAGCAAGGAGGAGTGGGAAA+AGG | 0.488727 | 2_1:-5562752 | Msa0190110:CDS |
| GAAGAAGTGTATTGAGGCTG+AGG | 0.493672 | 2_1:-5562932 | Msa0190110:CDS |
| GAAGATCTTCCTCCTGCTGA+AGG | 0.497924 | 2_1:+5561342 | None:intergenic |
| TAGATTGTGAAGCGCAGCAT+TGG | 0.504862 | 2_1:-5561751 | Msa0190110:CDS |
| CAGCCAATAACAACGACTTA+AGG | 0.506636 | 2_1:+5562959 | None:intergenic |
| TCAGTTATCATTGGAAGCCA+TGG | 0.506820 | 2_1:-5561021 | Msa0190110:CDS |
| GACGAATGAAAAGCAGAAGA+TGG | 0.508341 | 2_1:-5560979 | Msa0190110:CDS |
| CAAGTCCAAAGAATCTCAAT+GGG | 0.511165 | 2_1:-5562263 | Msa0190110:CDS |
| TCTGCTCAAGATGGTGCAAA+TGG | 0.511603 | 2_1:-5560744 | Msa0190110:CDS |
| TGTAGTTTCTCGAAGTTGCT+CGG | 0.513376 | 2_1:+5563260 | None:intergenic |
| GGAGGGAAGTAATAGTGAGT+TGG | 0.514949 | 2_1:-5563061 | Msa0190110:CDS |
| AGAACTTGTCCAAACAATGA+TGG | 0.515353 | 2_1:-5561483 | Msa0190110:CDS |
| GGATGTGATAATGCAATTGG+AGG | 0.515665 | 2_1:-5562872 | Msa0190110:CDS |
| AAAGTTGGTTGAGGTTAGCA+TGG | 0.517141 | 2_1:-5561204 | Msa0190110:CDS |
| GCAGTTTGTGTCAAAGAGAA+TGG | 0.518499 | 2_1:-5562034 | Msa0190110:CDS |
| CTCAAATACGTGGCGCGGGA+GGG | 0.518796 | 2_1:-5562360 | Msa0190110:CDS |
| TGAGAGGGTGTTCAAATTGG+AGG | 0.521099 | 2_1:-5563079 | Msa0190110:CDS |
| AGCCGAGCTAAGAAACTCGT+TGG | 0.526234 | 2_1:-5562482 | Msa0190110:CDS |
| ATCATTGGAAGCCATGGAGT+TGG | 0.526584 | 2_1:-5561015 | Msa0190110:CDS |
| TTACAAAGTTATCGACAGAA+AGG | 0.528275 | 2_1:-5560905 | Msa0190110:CDS |
| GACAGAAAGGGAAGATATGT+TGG | 0.530584 | 2_1:-5560892 | Msa0190110:CDS |
| GCTCAAATACGTGGCGCGGG+AGG | 0.532341 | 2_1:-5562361 | Msa0190110:CDS |
| GAATGAGCAAGCCCTTAAGC+TGG | 0.532831 | 2_1:-5561639 | Msa0190110:CDS |
| GGATTGTCAGATAGCAAAGA+TGG | 0.533960 | 2_1:-5562242 | Msa0190110:CDS |
| CAACAAGCTTAGAAAGTTGG+AGG | 0.534255 | 2_1:-5562314 | Msa0190110:CDS |
| TCTCAGACAAGAACTTTGGA+AGG | 0.535844 | 2_1:-5562679 | Msa0190110:CDS |
| TTCAAGCTAGGTTTGCTGAG+AGG | 0.540809 | 2_1:-5563095 | Msa0190110:CDS |
| GATCCTTGACAATGCAGAGA+AGG | 0.541024 | 2_1:+5561606 | None:intergenic |
| GCCGAGCTAAGAAACTCGTT+GGG | 0.541330 | 2_1:-5562481 | Msa0190110:CDS |
| TACAAAGTTATCGACAGAAA+GGG | 0.541451 | 2_1:-5560904 | Msa0190110:CDS |
| CTCAGACAAGAACTTTGGAA+GGG | 0.541545 | 2_1:-5562678 | Msa0190110:CDS |
| CTCAAAACTAGTCTTGAACT+CGG | 0.542319 | 2_1:+5562576 | None:intergenic |
| GTATCCTATCAAGAAATTCA+GGG | 0.543754 | 2_1:-5561704 | Msa0190110:CDS |
| TCAAGTAGAAAAGTTGGTTG+AGG | 0.545469 | 2_1:-5561213 | Msa0190110:CDS |
| AGCAGAACTCGAGAAGCTTA+GGG | 0.546789 | 2_1:-5563334 | Msa0190110:intron |
| GGAAACTTCTCTTCTGTCAC+GGG | 0.547308 | 2_1:-5561666 | Msa0190110:CDS |
| TCAGGGAACCTGTAAAGAGA+TGG | 0.553024 | 2_1:-5561687 | Msa0190110:CDS |
| GTAGTTTGTGATAATCTACA+TGG | 0.554725 | 2_1:-5560768 | Msa0190110:CDS |
| AAGGAGAGATCTTTGCTGGT+TGG | 0.554797 | 2_1:-5562733 | Msa0190110:CDS |
| TGGCTCGCGAAGAAAGTAAG+AGG | 0.555018 | 2_1:-5562621 | Msa0190110:CDS |
| TTGCTTGAGGAATCATCTGC+AGG | 0.557828 | 2_1:-5561902 | Msa0190110:CDS |
| TGGAAACTTCTCTTCTGTCA+CGG | 0.558765 | 2_1:-5561667 | Msa0190110:CDS |
| AGAATAACAAGATTCAAGCT+AGG | 0.559756 | 2_1:-5563107 | Msa0190110:CDS |
| CAAGGATCAGGAGAGAGATA+CGG | 0.561257 | 2_1:-5561591 | Msa0190110:CDS |
| CTACATGGTTCTGCTCAAGA+TGG | 0.561420 | 2_1:-5560753 | Msa0190110:CDS |
| TTCGATCGAGCAAGGAGGAG+TGG | 0.561741 | 2_1:-5562759 | Msa0190110:CDS |
| GAAGCTCAAATACGTGGCGC+GGG | 0.563592 | 2_1:-5562364 | Msa0190110:CDS |
| CTCTTGTGAAGGAAATGGAA+AGG | 0.565165 | 2_1:-5562447 | Msa0190110:CDS |
| TCGATCGAGCAAGGAGGAGT+GGG | 0.570348 | 2_1:-5562758 | Msa0190110:CDS |
| GAAAGAGCAGCTCTTGCAGA+TGG | 0.574508 | 2_1:-5561867 | Msa0190110:CDS |
| AGAATCCAAACTCATTTGCA+AGG | 0.578928 | 2_1:+5562699 | None:intergenic |
| CTGACTTGAGATCGAGCTCA+CGG | 0.580025 | 2_1:+5563217 | None:intergenic |
| TGAACTGAAGAGAATTAATG+AGG | 0.582035 | 2_1:-5563184 | Msa0190110:CDS |
| AGATCAGTTTCGATCGAGCA+AGG | 0.582339 | 2_1:-5562767 | Msa0190110:CDS |
| AAACCTTCTCTGCATTGTCA+AGG | 0.582460 | 2_1:-5561609 | Msa0190110:CDS |
| AAGATCTTCCTCCTGCTGAA+GGG | 0.590521 | 2_1:+5561343 | None:intergenic |
| TGACTTGAGATCGAGCTCAC+GGG | 0.590922 | 2_1:+5563218 | None:intergenic |
| TGTCCAAACAATGATGGAGA+AGG | 0.591175 | 2_1:-5561477 | Msa0190110:CDS |
| GTAAAGCTATCTGCAGCTGA+AGG | 0.592450 | 2_1:+5561564 | None:intergenic |
| AATTGGTGATTTGTCTAGTG+AGG | 0.592985 | 2_1:-5560844 | Msa0190110:CDS |
| TGATGAAAATGAAACAGCAA+TGG | 0.595687 | 2_1:-5560796 | Msa0190110:CDS |
| GAGAGGGTGTTCAAATTGGA+GGG | 0.595884 | 2_1:-5563078 | Msa0190110:CDS |
| AAACTGTTAACCTCTCTCAA+TGG | 0.596687 | 2_1:+5560666 | None:intergenic |
| AAAGAAAGAGACTCTTGTGA+AGG | 0.601023 | 2_1:-5562458 | Msa0190110:CDS |
| GAATGTTTGTGAAAGTAGCG+AGG | 0.601228 | 2_1:-5562992 | Msa0190110:CDS |
| AGAAGCTCAAATACGTGGCG+CGG | 0.605914 | 2_1:-5562365 | Msa0190110:CDS |
| GAGCCTGAAGCAAGAGTCCA+TGG | 0.607550 | 2_1:-5561414 | Msa0190110:CDS |
| CTCTTGCTTCAGGCTCGCAA+CGG | 0.609523 | 2_1:+5561421 | None:intergenic |
| TGGGCGATTGCCATTGAGAG+AGG | 0.610783 | 2_1:-5560676 | Msa0190110:CDS |
| TGAGGTTAGCATGGTTACAG+AGG | 0.611718 | 2_1:-5561195 | Msa0190110:CDS |
| ACAACAGAAGAAATTGCTTG+AGG | 0.618482 | 2_1:-5561915 | Msa0190110:CDS |
| CAAGCTTAGAAAGTTGGAGG+AGG | 0.618855 | 2_1:-5562311 | Msa0190110:CDS |
| TGCTGAGAAGAAGTGTATTG+AGG | 0.629290 | 2_1:-5562938 | Msa0190110:CDS |
| TGAGCTCGATCTCAAGTCAG+AGG | 0.648732 | 2_1:-5563214 | Msa0190110:CDS |
| GAACAAGATAATCAGGAACT+GGG | 0.653060 | 2_1:-5562409 | Msa0190110:CDS |
| TAGAAGAGTTGACTGTTCGG+AGG | 0.671753 | 2_1:-5562516 | Msa0190110:CDS |
| CTGTAATGCAGAGAAAACAA+AGG | 0.674955 | 2_1:-5561534 | Msa0190110:CDS |
| TTTAGAGAAGCTCAAATACG+TGG | 0.703819 | 2_1:-5562370 | Msa0190110:CDS |
| GAAGACGGTGAAATTAAGAG+AGG | 0.704691 | 2_1:-5562893 | Msa0190110:CDS |
| TCAGTTTCGATCGAGCAAGG+AGG | 0.724053 | 2_1:-5562764 | Msa0190110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTAATTTTCAATTTATTA+AGG | - | chr2_1:5561379-5561398 | Msa0190110:CDS | 10.0% |
| !! | TGATAATAATTAAAAAAGGA+CGG | + | chr2_1:5561193-5561212 | None:intergenic | 15.0% |
| !! | ATTATATATTAGCAATGTAA+CGG | + | chr2_1:5561225-5561244 | None:intergenic | 15.0% |
| !!! | TTCTTCAATTTTTTTATTTG+TGG | + | chr2_1:5564332-5564351 | None:intergenic | 15.0% |
| !!! | AAAATTGAAGAAAATTTTGA+TGG | - | chr2_1:5564340-5564359 | Msa0190110:intron | 15.0% |
| !!! | AAATTGAAGAAAATTTTGAT+GGG | - | chr2_1:5564341-5564360 | Msa0190110:intron | 15.0% |
| !! | TTTCAAAATTGTCAAAAATG+TGG | - | chr2_1:5560846-5560865 | Msa0190110:CDS | 20.0% |
| !! | AGATAGGAAGAAAAAAAAAA+AGG | + | chr2_1:5560986-5561005 | None:intergenic | 20.0% |
| !!! | TATTTTTTGTTTGGAAAGAT+AGG | + | chr2_1:5561002-5561021 | None:intergenic | 20.0% |
| !!! | AAATTTGGGTATTTTTTGTT+TGG | + | chr2_1:5561011-5561030 | None:intergenic | 20.0% |
| !! | CATCTTATAATTTCGAATTT+AGG | - | chr2_1:5561257-5561276 | Msa0190110:CDS | 20.0% |
| !! | ATAACTTGAAAAAATAGATC+TGG | + | chr2_1:5561321-5561340 | None:intergenic | 20.0% |
| !! | GTTAATCAATGTATTTCTTA+TGG | - | chr2_1:5561401-5561420 | Msa0190110:CDS | 20.0% |
| !!! | TCAAATCTGTATGTATTTTA+GGG | - | chr2_1:5561629-5561648 | Msa0190110:CDS | 20.0% |
| !!! | AACTTTTCTTTCATGTTTTA+GGG | + | chr2_1:5563201-5563220 | None:intergenic | 20.0% |
| !! | GAACACAAGAATAATTAAAT+CGG | - | chr2_1:5563910-5563929 | Msa0190110:intron | 20.0% |
| !! | AAGAATAATTAAATCGGAAT+CGG | - | chr2_1:5563916-5563935 | Msa0190110:intron | 20.0% |
| !!! | TAAAAGTTTTCTTGAGAATT+TGG | - | chr2_1:5563943-5563962 | Msa0190110:intron | 20.0% |
| !!! | TCAATTTTTTTATTTGTGGA+AGG | + | chr2_1:5564328-5564347 | None:intergenic | 20.0% |
| !! | ATATCACACATTTTAAACCT+AGG | - | chr2_1:5560912-5560931 | Msa0190110:CDS | 25.0% |
| !!! | ACACAATTCTAAAATTTGAG+AGG | - | chr2_1:5560943-5560962 | Msa0190110:CDS | 25.0% |
| !!! | CACAATTCTAAAATTTGAGA+GGG | - | chr2_1:5560944-5560963 | Msa0190110:CDS | 25.0% |
| !! | GGTCTTTTCTTTTCAAATTT+GGG | + | chr2_1:5561025-5561044 | None:intergenic | 25.0% |
| ! | CTATGACTCTTACATTATTA+TGG | - | chr2_1:5561294-5561313 | Msa0190110:CDS | 25.0% |
| ! | TTTATGACTAAAGCTATGTT+TGG | + | chr2_1:5561606-5561625 | None:intergenic | 25.0% |
| !! | CTCAAATCTGTATGTATTTT+AGG | - | chr2_1:5561628-5561647 | Msa0190110:CDS | 25.0% |
| ! | GTACATTGTGCATTTAAATT+CGG | - | chr2_1:5561906-5561925 | Msa0190110:CDS | 25.0% |
| ! | CTGTGCAAGATAAAATTAAA+TGG | - | chr2_1:5562199-5562218 | Msa0190110:CDS | 25.0% |
| ! | TTCAATATGATTCTCTTCAA+TGG | + | chr2_1:5562910-5562929 | None:intergenic | 25.0% |
| ! | AGACAATTCTCTAAACAATA+TGG | - | chr2_1:5563064-5563083 | Msa0190110:CDS | 25.0% |
| !! | CAACTTTTCTTTCATGTTTT+AGG | + | chr2_1:5563202-5563221 | None:intergenic | 25.0% |
| ! | AGAAATGCTAAAAGATGAAA+TGG | - | chr2_1:5563235-5563254 | Msa0190110:CDS | 25.0% |
| !! | ATCTTCTAATTCTTTTTCCA+TGG | + | chr2_1:5563642-5563661 | None:intergenic | 25.0% |
| ! | AATTGAAAAAGAGAAACACA+GGG | + | chr2_1:5563804-5563823 | None:intergenic | 25.0% |
| ! | TTCAATTCAAGTAGAAAAGT+TGG | - | chr2_1:5563817-5563836 | Msa0190110:intron | 25.0% |
| !! | GTGAGGGATTTCTAAAATAA+TGG | + | chr2_1:5560761-5560780 | None:intergenic | 30.0% |
| ! | CGGTCTTTTCTTTTCAAATT+TGG | + | chr2_1:5561026-5561045 | None:intergenic | 30.0% |
| TTTAGGGACAGATTAAAGAA+TGG | - | chr2_1:5561645-5561664 | Msa0190110:CDS | 30.0% | |
| TGAACTGAAGAGAATTAATG+AGG | - | chr2_1:5561852-5561871 | Msa0190110:CDS | 30.0% | |
| AGAATAACAAGATTCAAGCT+AGG | - | chr2_1:5561929-5561948 | Msa0190110:CDS | 30.0% | |
| !!! | AAGTAATAGTGAGTTGGTTT+TGG | - | chr2_1:5561981-5562000 | Msa0190110:CDS | 30.0% |
| !!! | ACTAGTTTTGAGGATGTTTA+TGG | - | chr2_1:5562471-5562490 | Msa0190110:CDS | 30.0% |
| CCAACAAAGAACAAGAAATT+CGG | - | chr2_1:5562850-5562869 | Msa0190110:CDS | 30.0% | |
| CAACAAAGAACAAGAAATTC+GGG | - | chr2_1:5562851-5562870 | Msa0190110:CDS | 30.0% | |
| GATGCTTACTTCAAATCATT+CGG | - | chr2_1:5562963-5562982 | Msa0190110:CDS | 30.0% | |
| ACAAAAACAATTTCTGTTGG+AGG | - | chr2_1:5563088-5563107 | Msa0190110:CDS | 30.0% | |
| TGAAAGAAAAGTTGCATTTG+AGG | - | chr2_1:5563208-5563227 | Msa0190110:CDS | 30.0% | |
| AGATAGTTCATCATTCTTAC+TGG | + | chr2_1:5563261-5563280 | None:intergenic | 30.0% | |
| AGTATCCTATCAAGAAATTC+AGG | - | chr2_1:5563331-5563350 | Msa0190110:CDS | 30.0% | |
| GTATCCTATCAAGAAATTCA+GGG | - | chr2_1:5563332-5563351 | Msa0190110:CDS | 30.0% | |
| ! | TTTTTCTTGCCTAAATCTCT+CGG | + | chr2_1:5563531-5563550 | None:intergenic | 30.0% |
| ! | TGAAACTATAAAGCACTTTC+AGG | - | chr2_1:5563742-5563761 | Msa0190110:intron | 30.0% |
| !!! | AGCATCAGAACAAGATTTTT+TGG | - | chr2_1:5563775-5563794 | Msa0190110:intron | 30.0% |
| !!! | ATCAGAACAAGATTTTTTGG+AGG | - | chr2_1:5563778-5563797 | Msa0190110:intron | 30.0% |
| GAATTGAAAAAGAGAAACAC+AGG | + | chr2_1:5563805-5563824 | None:intergenic | 30.0% | |
| !!! | CTTCAATTTCTAGTTTTGTC+AGG | + | chr2_1:5563886-5563905 | None:intergenic | 30.0% |
| !!! | CTTCGCTTCATGTTTTAAAA+GGG | + | chr2_1:5563990-5564009 | None:intergenic | 30.0% |
| TTACAAAGTTATCGACAGAA+AGG | - | chr2_1:5564131-5564150 | Msa0190110:intron | 30.0% | |
| TACAAAGTTATCGACAGAAA+GGG | - | chr2_1:5564132-5564151 | Msa0190110:intron | 30.0% | |
| GAGTACATCTATGACAAAAT+TGG | - | chr2_1:5564175-5564194 | Msa0190110:intron | 30.0% | |
| TGATGAAAATGAAACAGCAA+TGG | - | chr2_1:5564240-5564259 | Msa0190110:intron | 30.0% | |
| ! | GTAGTTTGTGATAATCTACA+TGG | - | chr2_1:5564268-5564287 | Msa0190110:intron | 30.0% |
| ACTAGATGATGCAAAACACA+AGG | + | chr2_1:5560704-5560723 | None:intergenic | 35.0% | |
| TTGCATCATCTAGTTGATCT+TGG | - | chr2_1:5560710-5560729 | Msa0190110:CDS | 35.0% | |
| TGCATCATCTAGTTGATCTT+GGG | - | chr2_1:5560711-5560730 | Msa0190110:CDS | 35.0% | |
| !! | GAATTGTGTGATTTTGACCT+AGG | + | chr2_1:5560932-5560951 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATGAGTTATCT+TGG | + | chr2_1:5561526-5561545 | None:intergenic | 35.0% |
| !!! | CGATTTGTTGTGTTTTGACT+CGG | + | chr2_1:5561735-5561754 | None:intergenic | 35.0% |
| TACTGCTAGAAACAGTTGTT+TGG | - | chr2_1:5562017-5562036 | Msa0190110:CDS | 35.0% | |
| ! | AGAGGATGTGATAATGCAAT+TGG | - | chr2_1:5562161-5562180 | Msa0190110:CDS | 35.0% |
| ATCTTCCTTGCAAATGAGTT+TGG | - | chr2_1:5562332-5562351 | Msa0190110:CDS | 35.0% | |
| AGAATCCAAACTCATTTGCA+AGG | + | chr2_1:5562340-5562359 | None:intergenic | 35.0% | |
| ! | AGAAAGTAAGAGGAAGCTTT+TGG | - | chr2_1:5562425-5562444 | Msa0190110:CDS | 35.0% |
| !! | CTCAAAACTAGTCTTGAACT+CGG | + | chr2_1:5562463-5562482 | None:intergenic | 35.0% |
| AGATAGAAGAGTTGACTGTT+CGG | - | chr2_1:5562517-5562536 | Msa0190110:CDS | 35.0% | |
| AAAGAAAGAGACTCTTGTGA+AGG | - | chr2_1:5562578-5562597 | Msa0190110:CDS | 35.0% | |
| GAACAAGATAATCAGGAACT+GGG | - | chr2_1:5562627-5562646 | Msa0190110:CDS | 35.0% | |
| TTTAGAGAAGCTCAAATACG+TGG | - | chr2_1:5562666-5562685 | Msa0190110:CDS | 35.0% | |
| TCAAGTCCAAAGAATCTCAA+TGG | - | chr2_1:5562772-5562791 | Msa0190110:CDS | 35.0% | |
| CAAGTCCAAAGAATCTCAAT+GGG | - | chr2_1:5562773-5562792 | Msa0190110:CDS | 35.0% | |
| ACAATCCCATTGAGATTCTT+TGG | + | chr2_1:5562781-5562800 | None:intergenic | 35.0% | |
| AAGATGGAAGCAGATGTTAT+TGG | - | chr2_1:5562810-5562829 | Msa0190110:CDS | 35.0% | |
| CCGAATTTCTTGTTCTTTGT+TGG | + | chr2_1:5562853-5562872 | None:intergenic | 35.0% | |
| AAATCATTCGGTACAGAAAC+CGG | - | chr2_1:5562975-5562994 | Msa0190110:CDS | 35.0% | |
| TTTGACACAAACTGCTTTAC+CGG | + | chr2_1:5562997-5563016 | None:intergenic | 35.0% | |
| GGCACAAAAACAATTTCTGT+TGG | - | chr2_1:5563085-5563104 | Msa0190110:CDS | 35.0% | |
| ACAACAGAAGAAATTGCTTG+AGG | - | chr2_1:5563121-5563140 | Msa0190110:CDS | 35.0% | |
| AGAAGTTTCCATCTCTTTAC+AGG | + | chr2_1:5563360-5563379 | None:intergenic | 35.0% | |
| ! | GTTTTTGTTCTCCAGCTTAA+GGG | + | chr2_1:5563411-5563430 | None:intergenic | 35.0% |
| !!! | CTTTGTTTTCTCTGCATTAC+AGG | + | chr2_1:5563504-5563523 | None:intergenic | 35.0% |
| CTGTAATGCAGAGAAAACAA+AGG | - | chr2_1:5563502-5563521 | Msa0190110:intron | 35.0% | |
| AGAACTTGTCCAAACAATGA+TGG | - | chr2_1:5563553-5563572 | Msa0190110:intron | 35.0% | |
| AATCCTTCTCCATCATTGTT+TGG | + | chr2_1:5563565-5563584 | None:intergenic | 35.0% | |
| ! | TCAAGTAGAAAAGTTGGTTG+AGG | - | chr2_1:5563823-5563842 | Msa0190110:intron | 35.0% |
| ! | TTTTCTTGAGAATTTGGCAC+AGG | - | chr2_1:5563949-5563968 | Msa0190110:intron | 35.0% |
| !! | GCTTCGCTTCATGTTTTAAA+AGG | + | chr2_1:5563991-5564010 | None:intergenic | 35.0% |
| GAAGCAGTTTCAGTTATCAT+TGG | - | chr2_1:5564006-5564025 | Msa0190110:intron | 35.0% | |
| !!! | CTTTTTAGTTTCCAACTCCA+TGG | + | chr2_1:5564035-5564054 | None:intergenic | 35.0% |
| ! | AATTGGTGATTTGTCTAGTG+AGG | - | chr2_1:5564192-5564211 | Msa0190110:intron | 35.0% |
| AAACTGTTAACCTCTCTCAA+TGG | + | chr2_1:5564373-5564392 | None:intergenic | 35.0% | |
| GATTCTGTTGTGTTCCGTTT+CGG | - | chr2_1:5561113-5561132 | Msa0190110:CDS | 40.0% | |
| GGTGAAAATTGAGACCGAAA+CGG | + | chr2_1:5561130-5561149 | None:intergenic | 40.0% | |
| TTCACCAACAACAACCAAAC+AGG | - | chr2_1:5561144-5561163 | Msa0190110:CDS | 40.0% | |
| GTTACCTGTTTGGTTGTTGT+TGG | + | chr2_1:5561151-5561170 | None:intergenic | 40.0% | |
| TAGAAGGAACGTTACCTGTT+TGG | + | chr2_1:5561161-5561180 | None:intergenic | 40.0% | |
| AGGGACAGATTAAAGAATGG+AGG | - | chr2_1:5561648-5561667 | Msa0190110:CDS | 40.0% | |
| TGTAGTTTCTCGAAGTTGCT+CGG | + | chr2_1:5561779-5561798 | None:intergenic | 40.0% | |
| !!! | TAGTGAGTTGGTTTTGGCTT+TGG | - | chr2_1:5561987-5562006 | Msa0190110:CDS | 40.0% |
| GAATGTTTGTGAAAGTAGCG+AGG | - | chr2_1:5562044-5562063 | Msa0190110:CDS | 40.0% | |
| GCACCTTAAGTCGTTGTTAT+TGG | - | chr2_1:5562074-5562093 | Msa0190110:CDS | 40.0% | |
| CAGCCAATAACAACGACTTA+AGG | + | chr2_1:5562080-5562099 | None:intergenic | 40.0% | |
| ! | TGCTGAGAAGAAGTGTATTG+AGG | - | chr2_1:5562098-5562117 | Msa0190110:CDS | 40.0% |
| GAAGACGGTGAAATTAAGAG+AGG | - | chr2_1:5562143-5562162 | Msa0190110:CDS | 40.0% | |
| ! | GGATGTGATAATGCAATTGG+AGG | - | chr2_1:5562164-5562183 | Msa0190110:CDS | 40.0% |
| GGATTCTCAGACAAGAACTT+TGG | - | chr2_1:5562353-5562372 | Msa0190110:CDS | 40.0% | |
| TCTCAGACAAGAACTTTGGA+AGG | - | chr2_1:5562357-5562376 | Msa0190110:CDS | 40.0% | |
| ! | CTCAGACAAGAACTTTGGAA+GGG | - | chr2_1:5562358-5562377 | Msa0190110:CDS | 40.0% |
| CGAGATGTGTAATCATGCTT+TGG | - | chr2_1:5562395-5562414 | Msa0190110:CDS | 40.0% | |
| ! | AAGTAAGAGGAAGCTTTTGG+AGG | - | chr2_1:5562428-5562447 | Msa0190110:CDS | 40.0% |
| !!! | CGAGTTCAAGACTAGTTTTG+AGG | - | chr2_1:5562461-5562480 | Msa0190110:CDS | 40.0% |
| AGAGACTCTTGTGAAGGAAA+TGG | - | chr2_1:5562584-5562603 | Msa0190110:CDS | 40.0% | |
| CTCTTGTGAAGGAAATGGAA+AGG | - | chr2_1:5562589-5562608 | Msa0190110:CDS | 40.0% | |
| TCTCCTCGAACAAGATAATC+AGG | - | chr2_1:5562620-5562639 | Msa0190110:CDS | 40.0% | |
| GTTCCTGATTATCTTGTTCG+AGG | + | chr2_1:5562626-5562645 | None:intergenic | 40.0% | |
| CGAACAAGATAATCAGGAAC+TGG | - | chr2_1:5562626-5562645 | Msa0190110:CDS | 40.0% | |
| TCGCAACAAGCTTAGAAAGT+TGG | - | chr2_1:5562719-5562738 | Msa0190110:CDS | 40.0% | |
| CAACAAGCTTAGAAAGTTGG+AGG | - | chr2_1:5562722-5562741 | Msa0190110:CDS | 40.0% | |
| GGATTGTCAGATAGCAAAGA+TGG | - | chr2_1:5562794-5562813 | Msa0190110:CDS | 40.0% | |
| GCAGTTTGTGTCAAAGAGAA+TGG | - | chr2_1:5563002-5563021 | Msa0190110:CDS | 40.0% | |
| GGTTCCCTGAATTTCTTGAT+AGG | + | chr2_1:5563339-5563358 | None:intergenic | 40.0% | |
| TGGAAACTTCTCTTCTGTCA+CGG | - | chr2_1:5563369-5563388 | Msa0190110:intron | 40.0% | |
| ! | GGTTTTTGTTCTCCAGCTTA+AGG | + | chr2_1:5563412-5563431 | None:intergenic | 40.0% |
| AAACCTTCTCTGCATTGTCA+AGG | - | chr2_1:5563427-5563446 | Msa0190110:intron | 40.0% | |
| ! | TGTCCAAACAATGATGGAGA+AGG | - | chr2_1:5563559-5563578 | Msa0190110:intron | 40.0% |
| ! | AAAGTTGGTTGAGGTTAGCA+TGG | - | chr2_1:5563832-5563851 | Msa0190110:intron | 40.0% |
| TCAGTTATCATTGGAAGCCA+TGG | - | chr2_1:5564015-5564034 | Msa0190110:intron | 40.0% | |
| GACGAATGAAAAGCAGAAGA+TGG | - | chr2_1:5564057-5564076 | Msa0190110:intron | 40.0% | |
| GCAGAGATCAAGTTTGAGAA+TGG | - | chr2_1:5564091-5564110 | Msa0190110:intron | 40.0% | |
| GACAGAAAGGGAAGATATGT+TGG | - | chr2_1:5564144-5564163 | Msa0190110:intron | 40.0% | |
| !!! | GGGTTGCTTTTTCAAGTGCT+CGG | - | chr2_1:5560658-5560677 | Msa0190110:CDS | 45.0% |
| ! | AGAAATCCCTCACGTTTTCC+AGG | - | chr2_1:5560768-5560787 | Msa0190110:CDS | 45.0% |
| ! | GAAATCCCTCACGTTTTCCA+GGG | - | chr2_1:5560769-5560788 | Msa0190110:CDS | 45.0% |
| AGGACGGAGAGAAATGTAGA+AGG | + | chr2_1:5561177-5561196 | None:intergenic | 45.0% | |
| AAGCAGAACTCGAGAAGCTT+AGG | - | chr2_1:5561701-5561720 | Msa0190110:CDS | 45.0% | |
| AGCAGAACTCGAGAAGCTTA+GGG | - | chr2_1:5561702-5561721 | Msa0190110:CDS | 45.0% | |
| !! | TTCAAGCTAGGTTTGCTGAG+AGG | - | chr2_1:5561941-5561960 | Msa0190110:CDS | 45.0% |
| !! | TCAAGCTAGGTTTGCTGAGA+GGG | - | chr2_1:5561942-5561961 | Msa0190110:CDS | 45.0% |
| !! | TGCTGAGAGGGTGTTCAAAT+TGG | - | chr2_1:5561954-5561973 | Msa0190110:CDS | 45.0% |
| !! | TGAGAGGGTGTTCAAATTGG+AGG | - | chr2_1:5561957-5561976 | Msa0190110:CDS | 45.0% |
| !! | GAGAGGGTGTTCAAATTGGA+GGG | - | chr2_1:5561958-5561977 | Msa0190110:CDS | 45.0% |
| GGAGGGAAGTAATAGTGAGT+TGG | - | chr2_1:5561975-5561994 | Msa0190110:CDS | 45.0% | |
| ! | GAAGAAGTGTATTGAGGCTG+AGG | - | chr2_1:5562104-5562123 | Msa0190110:CDS | 45.0% |
| AGATCAGTTTCGATCGAGCA+AGG | - | chr2_1:5562269-5562288 | Msa0190110:CDS | 45.0% | |
| GGAAAAGGAGAGATCTTTGC+TGG | - | chr2_1:5562299-5562318 | Msa0190110:CDS | 45.0% | |
| AAGGAGAGATCTTTGCTGGT+TGG | - | chr2_1:5562303-5562322 | Msa0190110:CDS | 45.0% | |
| TAGAAGAGTTGACTGTTCGG+AGG | - | chr2_1:5562520-5562539 | Msa0190110:CDS | 45.0% | |
| TCCCAACGAGTTTCTTAGCT+CGG | + | chr2_1:5562559-5562578 | None:intergenic | 45.0% | |
| CAAGCTTAGAAAGTTGGAGG+AGG | - | chr2_1:5562725-5562744 | Msa0190110:CDS | 45.0% | |
| TTGCTTGAGGAATCATCTGC+AGG | - | chr2_1:5563134-5563153 | Msa0190110:CDS | 45.0% | |
| TAGATTGTGAAGCGCAGCAT+TGG | - | chr2_1:5563285-5563304 | Msa0190110:CDS | 45.0% | |
| TCAGGGAACCTGTAAAGAGA+TGG | - | chr2_1:5563349-5563368 | Msa0190110:intron | 45.0% | |
| GGAAACTTCTCTTCTGTCAC+GGG | - | chr2_1:5563370-5563389 | Msa0190110:intron | 45.0% | |
| GATCCTTGACAATGCAGAGA+AGG | + | chr2_1:5563433-5563452 | None:intergenic | 45.0% | |
| TCTCTGCATTGTCAAGGATC+AGG | - | chr2_1:5563433-5563452 | Msa0190110:intron | 45.0% | |
| CAAGGATCAGGAGAGAGATA+CGG | - | chr2_1:5563445-5563464 | Msa0190110:intron | 45.0% | |
| GTAAAGCTATCTGCAGCTGA+AGG | + | chr2_1:5563475-5563494 | None:intergenic | 45.0% | |
| ! | TCAGCTGCAGATAGCTTTAC+TGG | - | chr2_1:5563475-5563494 | Msa0190110:intron | 45.0% |
| CAAAGGAAGCCGAGAGATTT+AGG | - | chr2_1:5563519-5563538 | Msa0190110:intron | 45.0% | |
| TTTCCATGGACTCTTGCTTC+AGG | + | chr2_1:5563628-5563647 | None:intergenic | 45.0% | |
| AAGATCTTCCTCCTGCTGAA+GGG | + | chr2_1:5563696-5563715 | None:intergenic | 45.0% | |
| AGCAGGAGGAAGATCTTCTT+TGG | - | chr2_1:5563699-5563718 | Msa0190110:intron | 45.0% | |
| TGAGGTTAGCATGGTTACAG+AGG | - | chr2_1:5563841-5563860 | Msa0190110:intron | 45.0% | |
| ATCATTGGAAGCCATGGAGT+TGG | - | chr2_1:5564021-5564040 | Msa0190110:intron | 45.0% | |
| ! | CTACATGGTTCTGCTCAAGA+TGG | - | chr2_1:5564283-5564302 | Msa0190110:intron | 45.0% |
| TCTGCTCAAGATGGTGCAAA+TGG | - | chr2_1:5564292-5564311 | Msa0190110:intron | 45.0% | |
| !! | ATAATGATAATAATTAAAAA+AGG | + | chr2_1:5561197-5561216 | None:intergenic | 5.0% |
| GTCAACCCTGGAAAACGTGA+GGG | + | chr2_1:5560777-5560796 | None:intergenic | 50.0% | |
| GAAAAGAAAAGACCGCGTCC+TGG | - | chr2_1:5561031-5561050 | Msa0190110:CDS | 50.0% | |
| TGACTTGAGATCGAGCTCAC+GGG | + | chr2_1:5561821-5561840 | None:intergenic | 50.0% | |
| ! | CTGACTTGAGATCGAGCTCA+CGG | + | chr2_1:5561822-5561841 | None:intergenic | 50.0% |
| TGAGCTCGATCTCAAGTCAG+AGG | - | chr2_1:5561822-5561841 | Msa0190110:CDS | 50.0% | |
| GAGAGCTAAGCAAGCGAAGA+CGG | - | chr2_1:5562128-5562147 | Msa0190110:CDS | 50.0% | |
| TCAGTTTCGATCGAGCAAGG+AGG | - | chr2_1:5562272-5562291 | Msa0190110:CDS | 50.0% | |
| TGGCTCGCGAAGAAAGTAAG+AGG | - | chr2_1:5562415-5562434 | Msa0190110:CDS | 50.0% | |
| AGCCGAGCTAAGAAACTCGT+TGG | - | chr2_1:5562554-5562573 | Msa0190110:CDS | 50.0% | |
| GCCGAGCTAAGAAACTCGTT+GGG | - | chr2_1:5562555-5562574 | Msa0190110:CDS | 50.0% | |
| AGAAGCTCAAATACGTGGCG+CGG | - | chr2_1:5562671-5562690 | Msa0190110:CDS | 50.0% | |
| TCGGGAGCTTCAGATAGAAC+TGG | - | chr2_1:5562869-5562888 | Msa0190110:CDS | 50.0% | |
| GAAAGAGCAGCTCTTGCAGA+TGG | - | chr2_1:5563169-5563188 | Msa0190110:CDS | 50.0% | |
| GAATGAGCAAGCCCTTAAGC+TGG | - | chr2_1:5563397-5563416 | Msa0190110:intron | 50.0% | |
| TGCACAAAAAGCCCTTCAGC+AGG | - | chr2_1:5563682-5563701 | Msa0190110:intron | 50.0% | |
| ACAAAAAGCCCTTCAGCAGG+AGG | - | chr2_1:5563685-5563704 | Msa0190110:intron | 50.0% | |
| GAAGATCTTCCTCCTGCTGA+AGG | + | chr2_1:5563697-5563716 | None:intergenic | 50.0% | |
| CGTCAACCCTGGAAAACGTG+AGG | + | chr2_1:5560778-5560797 | None:intergenic | 55.0% | |
| TTCCAGGGTTGACGAACGCA+TGG | - | chr2_1:5560784-5560803 | Msa0190110:CDS | 55.0% | |
| GTTTGTGAGACAGAGCGACC+AGG | + | chr2_1:5561052-5561071 | None:intergenic | 55.0% | |
| TTCGATCGAGCAAGGAGGAG+TGG | - | chr2_1:5562277-5562296 | Msa0190110:CDS | 55.0% | |
| TCGATCGAGCAAGGAGGAGT+GGG | - | chr2_1:5562278-5562297 | Msa0190110:CDS | 55.0% | |
| GAGCAAGGAGGAGTGGGAAA+AGG | - | chr2_1:5562284-5562303 | Msa0190110:CDS | 55.0% | |
| GAAGCTCAAATACGTGGCGC+GGG | - | chr2_1:5562672-5562691 | Msa0190110:CDS | 55.0% | |
| CTCTTGCTTCAGGCTCGCAA+CGG | + | chr2_1:5563618-5563637 | None:intergenic | 55.0% | |
| GAGCCTGAAGCAAGAGTCCA+TGG | - | chr2_1:5563622-5563641 | Msa0190110:intron | 55.0% | |
| TGGGCGATTGCCATTGAGAG+AGG | - | chr2_1:5564360-5564379 | Msa0190110:intron | 55.0% | |
| CTCCATGCGTTCGTCAACCC+TGG | + | chr2_1:5560789-5560808 | None:intergenic | 60.0% | |
| CTCAAATACGTGGCGCGGGA+GGG | - | chr2_1:5562676-5562695 | Msa0190110:CDS | 60.0% | |
| GAGACAGAGCGACCAGGACG+CGG | + | chr2_1:5561046-5561065 | None:intergenic | 65.0% | |
| GCTCAAATACGTGGCGCGGG+AGG | - | chr2_1:5562675-5562694 | Msa0190110:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 5560656 | 5564402 | 5560656 | ID=Msa0190110;Name=Msa0190110 |
| chr2_1 | mRNA | 5560656 | 5564402 | 5560656 | ID=Msa0190110-mRNA-1;Parent=Msa0190110;Name=Msa0190110-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|0|0|2|0|899 |
| chr2_1 | exon | 5564399 | 5564402 | 5564399 | ID=Msa0190110-mRNA-1:exon:2515;Parent=Msa0190110-mRNA-1 |
| chr2_1 | exon | 5560656 | 5563351 | 5560656 | ID=Msa0190110-mRNA-1:exon:2514;Parent=Msa0190110-mRNA-1 |
| chr2_1 | CDS | 5564399 | 5564402 | 5564399 | ID=Msa0190110-mRNA-1:cds;Parent=Msa0190110-mRNA-1 |
| chr2_1 | CDS | 5560656 | 5563351 | 5560656 | ID=Msa0190110-mRNA-1:cds;Parent=Msa0190110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
