AlfalfaGEDB | Msa0562300

M. sativa cultivar zhongmu-4 / Msa0562300

KEGG: -
GO: GO:0002790 GO:0003674 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006897 GO:0006909 GO:0007154 GO:0007155 GO:0007165 GO:0008104 GO:0008150 GO:0008283 GO:0009306 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0022610 GO:0023052 GO:0030587 GO:0031224 GO:0031226 GO:0031589 GO:0032502 GO:0032940 GO:0033036 GO:0033299 GO:0034613 GO:0038023 GO:0042886 GO:0044425 GO:0044459 GO:0044464 GO:0045184 GO:0046903 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051703 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072657 GO:0090702 GO:0098657 GO:0099120
PFAM: PF02990.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562300	PNX72904.1	99.388	327	2	0	5	331	143	469	0.0	668

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562300	sp\|Q9ZPS7\|TMN3_ARATH	93.987	316	19	0	5	320	205	520	0.0	610

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562300	A0A2K3L301	99.388	327	2	0	5	331	143	469	0.0	668

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0562300	0.838674	2.499821e-57	-8.615850e-47
Msa0003470	Msa0562300	-0.837589	4.754701e-57	-8.615850e-47
Msa0008850	Msa0562300	-0.817168	3.792803e-52	-8.615850e-47
Msa0013050	Msa0562300	0.850994	1.184758e-60	-8.615850e-47
Msa0020630	Msa0562300	-0.832351	9.931552e-56	-8.615850e-47
Msa0023830	Msa0562300	0.868113	8.307398e-66	-8.615850e-47
Msa0024680	Msa0562300	-0.825479	4.582980e-54	-8.615850e-47
Msa0027540	Msa0562300	-0.826357	2.835382e-54	-8.615850e-47
Msa0030310	Msa0562300	-0.818153	2.274427e-52	-8.615850e-47
Msa0030380	Msa0562300	-0.855117	7.821741e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562300	MtrunA17_Chr8g0375501	99.685	317	1	0	4	320	203	519	0.0	648
Msa0562300	MtrunA17_Chr6g0480551	93.987	316	19	0	5	320	201	516	0.0	613
Msa0562300	MtrunA17_Chr5g0434001	85.443	316	46	0	5	320	220	535	0.0	558
Msa0562300	MtrunA17_Chr4g0026371	45.483	321	172	1	2	322	203	520	2.93e-90	281
Msa0562300	MtrunA17_Chr8g0342031	41.379	319	183	2	5	320	259	576	5.40e-82	261
Msa0562300	MtrunA17_Chr8g0380651	40.938	320	181	3	5	319	200	516	3.82e-77	247
Msa0562300	MtrunA17_Chr2g0277491	40.625	320	182	3	5	319	194	510	3.76e-73	236
Msa0562300	MtrunA17_Chr3g0136881	38.245	319	192	2	2	320	251	564	9.97e-71	231
Msa0562300	MtrunA17_Chr1g0150181	38.486	317	190	2	4	320	254	565	3.70e-70	230
Msa0562300	MtrunA17_Chr4g0065301	32.317	328	203	7	2	320	266	583	5.97e-56	192

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0562300	AT2G01970.1	93.987	316	19	0	5	320	205	520	0.0	610
Msa0562300	AT1G14670.1	93.038	316	22	0	5	320	205	520	0.0	585
Msa0562300	AT5G37310.1	88.013	317	38	0	4	320	205	521	0.0	578
Msa0562300	AT5G37310.2	88.013	317	38	0	4	320	205	521	0.0	578
Msa0562300	AT1G08350.4	48.889	315	158	2	9	322	208	520	2.45e-102	311
Msa0562300	AT1G08350.1	48.254	315	160	2	9	322	127	439	1.47e-101	308
Msa0562300	AT1G08350.3	48.254	315	160	2	9	322	208	520	1.42e-100	308
Msa0562300	AT1G08350.2	48.254	315	160	2	9	322	208	520	1.42e-100	308
Msa0562300	AT3G13772.1	39.222	334	197	3	5	335	252	582	6.52e-80	256
Msa0562300	AT1G55130.1	39.498	319	189	2	5	320	248	565	8.34e-78	250

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Find 112 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTGCCATTGCCATCT+GGG	0.456769	4_1:-61993804	None:intergenic
AAAGACTGAAGCGCTTGGTG+AGG	0.652344	4_1:+61992348	Msa0562300:five_prime_UTR
AAATAAAGCTCCTCGGTTGT+AGG	0.389595	4_1:-61993325	None:intergenic
AACCAGATATGCTCAAGACG+AGG	0.687950	4_1:+61993032	Msa0562300:intron
AACCCTGCCATTGCCATCTG+GGG	0.595625	4_1:-61993803	None:intergenic
AACTGTTGACAAAGAAGGAA+AGG	0.575555	4_1:+61992555	Msa0562300:five_prime_UTR
AAGATCATGAATGGTGGTGG+AGG	0.577459	4_1:+61993990	Msa0562300:CDS
AAGCAATTGCAACTGTGTTA+AGG	0.431380	4_1:-61993589	None:intergenic
AAGCAGAACATAAGGAAAAG+AGG	0.507100	4_1:-61993566	None:intergenic
AAGGAAGAGGTGGAATTTCT+CGG	0.444124	4_1:-61993763	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAATATTTATACTCGCTC+GGG	-	chr4_1:61992585-61992604	None:intergenic	30.0%
AGTTTATGTACACAGTGAAA+TGG	+	chr4_1:61992722-61992741	Msa0562300:exon	30.0%
GCAGATAAAAATGAAAAACG+AGG	-	chr4_1:61993003-61993022	None:intergenic	30.0%
AAGTTGAATATAGAAGGAAG+TGG	-	chr4_1:61993403-61993422	None:intergenic	30.0%
TCCTTCTATATTCAACTTGA+AGG	+	chr4_1:61993405-61993424	Msa0562300:CDS	30.0%
CCTTCTATATTCAACTTGAA+GGG	+	chr4_1:61993406-61993425	Msa0562300:CDS	30.0%
ATTACTGTTTGATTGTGGAA+TGG	+	chr4_1:61993457-61993476	Msa0562300:intron	30.0%
GAGGTATGTAACTTATCTTA+TGG	+	chr4_1:61994009-61994028	Msa0562300:CDS	30.0%
GAAAATATTTATACTCGCTC+GGG	-	chr4_1:61992585-61992604	None:intergenic	30.0%
AGTTTATGTACACAGTGAAA+TGG	+	chr4_1:61992722-61992741	Msa0562300:exon	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	61992342	61994181	61992342	ID=Msa0562300;Name=Msa0562300
chr4_1	mRNA	61992342	61994181	61992342	ID=Msa0562300-mRNA-1;Parent=Msa0562300;Name=Msa0562300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=399\|0.75\|0.6\|0.8\|1\|1\|5\|0\|340
chr4_1	exon	61992342	61992919	61992342	ID=Msa0562300-mRNA-1:exon:19587;Parent=Msa0562300-mRNA-1
chr4_1	exon	61993038	61993175	61993038	ID=Msa0562300-mRNA-1:exon:19588;Parent=Msa0562300-mRNA-1
chr4_1	exon	61993281	61993437	61993281	ID=Msa0562300-mRNA-1:exon:19589;Parent=Msa0562300-mRNA-1
chr4_1	exon	61993527	61994054	61993527	ID=Msa0562300-mRNA-1:exon:19590;Parent=Msa0562300-mRNA-1
chr4_1	exon	61994161	61994181	61994161	ID=Msa0562300-mRNA-1:exon:19591;Parent=Msa0562300-mRNA-1
chr4_1	five_prime_UTR	61992342	61992740	61992342	ID=Msa0562300-mRNA-1:five_prime_utr;Parent=Msa0562300-mRNA-1
chr4_1	CDS	61992741	61992919	61992741	ID=Msa0562300-mRNA-1:cds;Parent=Msa0562300-mRNA-1
chr4_1	CDS	61993038	61993175	61993038	ID=Msa0562300-mRNA-1:cds;Parent=Msa0562300-mRNA-1
chr4_1	CDS	61993281	61993437	61993281	ID=Msa0562300-mRNA-1:cds;Parent=Msa0562300-mRNA-1
chr4_1	CDS	61993527	61994054	61993527	ID=Msa0562300-mRNA-1:cds;Parent=Msa0562300-mRNA-1
chr4_1	CDS	61994161	61994181	61994161	ID=Msa0562300-mRNA-1:cds;Parent=Msa0562300-mRNA-1

Gene Sequence

>Msa0562300

ATGGAAGGAAACGATATTCCTTTTGAGAAGAGAATGGAAAAATACTCTCAGTCTTCTTCTCTTCCACATCACTTGGAGATTCACTGGTTCTCCATCATAAACTCCTGTGTGACGGTTCTTCTTTTGACTGGTTTCCTGGCAACCATTCTCATGCGTGTCTTGAAGAATGATTTTATGAAATATGCTCAAGACGAGGAAGCTGCTGATGATCAAGAGGAGACAGGATGGAAGTACATTCACGGCGATGTTTTCCGGTTTCCCAAGTTCAAGTCCATATTTGCAGCTGCCCTTGGTTCCGGCACTCAGTTATTCACTCTCACAATCTTCATTTTTATGCTTGCACTGGTTGGTGTATTCTATCCCTACAACCGAGGAGCTTTATTTACTGCACTCGTGGTCATATATGCTCTCACATCTGGAATTGCTGGATATACTGCCACTTCCTTCTATATTCAACTTGAAGGGACTAATTGGGTTAGAAACTTATTGCTGACAGGATGCCTCTTTTGTGGCCCTCTTTTCCTTATGTTCTGCTTCCTTAACACAGTTGCAATTGCTTATAGTGCAACTGCTGCCCTTCCTTTTGGCACAATTTGCGTGATAGTCCTAATATGGACGCTGGTAACTTCGCCATTACTTGTGTTAGGTGGAATTGCAGGTAAAAATAGCAAAACAGAGTTCCAAGCACCTGTCCGCACTACTAAATATCCCCGAGAAATTCCACCTCTTCCTTGGTACAGGAGCACCATTCCCCAGATGGCAATGGCAGGGTTTCTCCCATTCAGTGCCATCTACATAGAGCTGTACTACATTTTTGCTAGTGTCTGGGGCCACAGGATTTACACTATCTACAGCATACTCTTCATCGTCTTTATTATTCTGTTGATCGTCACTGCTTTCATCACTGTGGCTTTGACATACTTTCAACTTGCTGCAGAAGATCATGAATGGTGGTGGAGGTATGTAACTTATCTTATGGAAAATGCGTTGTTGTACAAACTTTTTGCTATTCATACTGAATAG

Protein sequence

>Msa0562300

MEGNDIPFEKRMEKYSQSSSLPHHLEIHWFSIINSCVTVLLLTGFLATILMRVLKNDFMKYAQDEEAADDQEETGWKYIHGDVFRFPKFKSIFAAALGSGTQLFTLTIFIFMLALVGVFYPYNRGALFTALVVIYALTSGIAGYTATSFYIQLEGTNWVRNLLLTGCLFCGPLFLMFCFLNTVAIAYSATAALPFGTICVIVLIWTLVTSPLLVLGGIAGKNSKTEFQAPVRTTKYPREIPPLPWYRSTIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYTIYSILFIVFIILLIVTAFITVALTYFQLAAEDHEWWWRYVTYLMENALLYKLFAIHTE*