AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0340550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340550 MtrunA17_Chr2g0329741 95.397 239 8 1 1 239 1 236 2.20e-165 459
Msa0340550 MtrunA17_Chr2g0329741 77.083 48 11 0 240 287 105 152 2.86e-15 73.9
Msa0340550 MtrunA17_Chr4g0032231 32.663 199 116 4 36 225 55 244 1.12e-24 99.8
Msa0340550 MtrunA17_Chr1g0160481 27.160 162 109 2 52 210 36 191 5.29e-18 81.3
Msa0340550 MtrunA17_Chr3g0119081 27.160 162 109 2 52 210 40 195 8.57e-18 80.5
Msa0340550 MtrunA17_Chr1g0182521 30.702 114 65 1 128 241 485 584 6.16e-12 65.9
Msa0340550 MtrunA17_Chr3g0143411 29.661 118 82 1 85 202 243 359 7.23e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0340550 AT3G46870.1 34.091 176 104 3 51 223 72 238 2.57e-22 94.0
Msa0340550 AT5G09315.1 29.108 213 124 5 43 234 44 250 9.69e-20 87.0
Msa0340550 AT3G46870.2 31.915 188 104 4 51 223 72 250 5.06e-19 85.1
Msa0340550 AT4G39620.2 25.366 205 137 6 25 220 36 233 9.59e-14 71.6
Msa0340550 AT4G39620.1 25.366 205 137 6 25 220 36 233 1.13e-13 71.6
Msa0340550 AT1G62350.1 27.160 162 109 2 52 210 1 156 1.75e-13 68.2
Msa0340550 AT1G62350.2 27.160 162 109 2 52 210 57 212 3.68e-13 68.2
Msa0340550 AT3G18110.1 27.174 184 124 3 116 290 743 925 2.74e-11 64.7
Msa0340550 AT2G15630.1 27.907 172 108 5 128 287 435 602 5.48e-11 63.5
Msa0340550 AT3G04760.1 29.054 148 98 2 85 229 189 332 6.30e-11 63.2
Msa0340550 AT3G53170.3 28.293 205 127 6 17 217 49 237 9.33e-11 62.4
Msa0340550 AT3G53170.2 28.293 205 127 6 17 217 49 237 9.39e-11 62.8
Msa0340550 AT3G53170.1 28.293 205 127 6 17 217 49 237 9.39e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTTGAACGCTTTCTT+TGG 0.235310 2_4:-61906392 None:intergenic
ATGAAGGAAGATTGTGATTT+GGG 0.290404 2_4:-61906167 None:intergenic
ACTTTCTGAACAAATTTATC+AGG 0.290581 2_4:-61908751 None:intergenic
GCTTCTTCTGTTGTTGTTGT+TGG 0.303251 2_4:-61906302 None:intergenic
TACAGATCCATGAAGGCTTC+AGG 0.306225 2_4:+61908616 Msa0340550:CDS
TCATTGAACAACCTCGTATC+TGG 0.321501 2_4:-61908541 None:intergenic
TTCAATCGGGTGGTTGAAAC+TGG 0.331042 2_4:+61909838 Msa0340550:CDS
AATGAAGGAAGATTGTGATT+TGG 0.342371 2_4:-61906168 None:intergenic
CAAACACCCTGAAGCCTTCA+TGG 0.358156 2_4:-61908623 None:intergenic
TGACATTCACTATACTGATT+AGG 0.360015 2_4:+61908656 Msa0340550:CDS
ATTAGGAATCTAATGAATAA+TGG 0.372286 2_4:+61908673 Msa0340550:CDS
TTCTGACACTATATTGTTGC+TGG 0.386533 2_4:+61908453 Msa0340550:CDS
TTCAATCAAGTTGTGGAAAA+GGG 0.393035 2_4:+61908511 Msa0340550:CDS
GAAGGCTTCAGGGTGTTTGC+CGG 0.397835 2_4:+61908627 Msa0340550:CDS
TCTTTGGAAATTACCATTGA+AGG 0.404903 2_4:-61906376 None:intergenic
GGTTGTTCAATGAGATGATC+GGG 0.409297 2_4:+61908551 Msa0340550:CDS
GCCAAGACAATTAAAACATC+AGG 0.410998 2_4:-61906493 None:intergenic
GTTCAATCAAGTTGTGGAAA+AGG 0.412536 2_4:+61908510 Msa0340550:CDS
AGGAAGCTGGGTATGATAAA+TGG 0.414897 2_4:+61908416 Msa0340550:CDS
TCTTCTGTTGTTGTTGTTGG+TGG 0.436018 2_4:-61906299 None:intergenic
TTGTTGGTGGTTGAATTTGA+GGG 0.437351 2_4:-61906286 None:intergenic
TTATTTGCAAGTTGGTAATA+CGG 0.445470 2_4:+61908576 Msa0340550:CDS
AAACAAGAAACCACCTTCAA+TGG 0.451723 2_4:+61906363 Msa0340550:CDS
TTCTCAAGTCTAAATTGCTT+AGG 0.453872 2_4:+61906461 Msa0340550:CDS
TTGGTGGTTGAATTTGAGGG+TGG 0.456531 2_4:-61906283 None:intergenic
ATATGATACATTGCTGGAAC+AGG 0.457649 2_4:+61909753 Msa0340550:CDS
ATTATCAGTGATGAGGAAGC+TGG 0.464498 2_4:+61908403 Msa0340550:CDS
GCAATTTAGACTTGAGAACT+TGG 0.465307 2_4:-61906456 None:intergenic
GAAAACTCACATGTTTCAGC+TGG 0.472944 2_4:-61908774 None:intergenic
ACAGATCCATGAAGGCTTCA+GGG 0.478380 2_4:+61908617 Msa0340550:CDS
TTCTGACATGATACTGTTGT+TGG 0.482914 2_4:+61909780 Msa0340550:CDS
AGCAGGATATGATACATTGC+TGG 0.484807 2_4:+61909747 Msa0340550:CDS
GTTGTTGGTGGTTGAATTTG+AGG 0.490599 2_4:-61906287 None:intergenic
TGGCAGAAGAGATGTTCAAT+CGG 0.498409 2_4:+61909824 Msa0340550:CDS
ATCGGGGTTTATTTGCAAGT+TGG 0.501108 2_4:+61908568 Msa0340550:CDS
ATAGTGAATGTCAATGAATC+CGG 0.502047 2_4:-61908646 None:intergenic
GAATAATGGAGAACATGAAC+TGG 0.504471 2_4:+61908687 Msa0340550:CDS
TGGTGGTTGAATTTGAGGGT+GGG 0.506319 2_4:-61906282 None:intergenic
ATTATTAGTGATGAGGAAGC+AGG 0.523985 2_4:+61909730 Msa0340550:CDS
GTTTGAAATATCCATGCGCT+TGG 0.525505 2_4:-61906247 None:intergenic
CCTTGAGAGATAAATGGAGT+TGG 0.528634 2_4:-61906534 None:intergenic
TCTGACATGATACTGTTGTT+GGG 0.538800 2_4:+61909781 Msa0340550:CDS
AGAGCTTATTATTAGTGATG+AGG 0.540145 2_4:+61909723 Msa0340550:CDS
AGGTTGTTCAATGAGATGAT+CGG 0.544532 2_4:+61908550 Msa0340550:CDS
GGCAGAAGAGATGTTCAATC+GGG 0.546816 2_4:+61909825 Msa0340550:CDS
TCTGACACTATATTGTTGCT+GGG 0.554494 2_4:+61908454 Msa0340550:CDS
CCAACTCCATTTATCTCTCA+AGG 0.557133 2_4:+61906534 Msa0340550:CDS
TGGTAATACGGAGAAGGCGA+TGG 0.560110 2_4:+61908588 Msa0340550:CDS
GAGCGTGTTCAGTTGAATGA+AGG 0.565936 2_4:-61906183 None:intergenic
AAGCGCATGGATATTTCAAA+CGG 0.566841 2_4:+61906249 Msa0340550:CDS
CGAGTTTATTATCAGTGATG+AGG 0.571726 2_4:+61908396 Msa0340550:CDS
GCAAGTTGGTAATACGGAGA+AGG 0.574234 2_4:+61908582 Msa0340550:CDS
AGAGATGTTCAATCAAGTTG+TGG 0.585094 2_4:+61908504 Msa0340550:CDS
GGAGGTTTACAGATCCATGA+AGG 0.589588 2_4:+61908609 Msa0340550:CDS
TCAATCAAGTTGTGGAAAAG+GGG 0.591104 2_4:+61908512 Msa0340550:CDS
TTGGAAATTACCATTGAAGG+TGG 0.592079 2_4:-61906373 None:intergenic
TTATCAGTGATGAGGAAGCT+GGG 0.593218 2_4:+61908404 Msa0340550:CDS
AAAGAACAAGATGATTGAGA+TGG 0.594568 2_4:+61908477 Msa0340550:CDS
GAACAAGATGATTGAGATGG+CGG 0.602226 2_4:+61908480 Msa0340550:CDS
TGATACTAAGACCAAGCGCA+TGG 0.605391 2_4:+61906236 Msa0340550:CDS
GAAGGAAGATTGTGATTTGG+GGG 0.611317 2_4:-61906165 None:intergenic
AAGGAACAAGATGATTGAGA+TGG 0.616432 2_4:+61909804 Msa0340550:CDS
AGAAGAGATGTTCAATCGGG+TGG 0.626222 2_4:+61909828 Msa0340550:CDS
TAATACGGAGAAGGCGATGG+AGG 0.641911 2_4:+61908591 Msa0340550:CDS
ACATGATACTGTTGTTGGGA+AGG 0.647551 2_4:+61909785 Msa0340550:CDS
GATGAAAATTGAAGTAGCAG+CGG 0.652533 2_4:-61906205 None:intergenic
TGAAGGAAGATTGTGATTTG+GGG 0.654826 2_4:-61906166 None:intergenic
AATATAGTGTCAGAATACAA+TGG 0.656425 2_4:-61908445 None:intergenic
GTTGTTCAATGAGATGATCG+GGG 0.665655 2_4:+61908552 Msa0340550:CDS
AAAGCAACAACAGTAGTATG+CGG 0.695765 2_4:+61906325 Msa0340550:CDS
GGTGGTTGAAACTGGAAACG+AGG 0.718348 2_4:+61909846 Msa0340550:CDS
AGGGGTTGAAACCAGATACG+AGG 0.767064 2_4:+61908530 Msa0340550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAACTTATATGAAAATTATA+TGG + chr2_4:61906771-61906790 Msa0340550:intron 10.0%
!!! AAATTATATGGCTTTATTTT+AGG + chr2_4:61906783-61906802 Msa0340550:intron 15.0%
!!! TTTTATTTTTTTTTTAGCCT+TGG + chr2_4:61906919-61906938 Msa0340550:intron 15.0%
!!! TTTATTTTTTTTTTAGCCTT+GGG + chr2_4:61906920-61906939 Msa0340550:intron 15.0%
!! TCTATCAAAAGATAAAATAA+AGG - chr2_4:61907027-61907046 None:intergenic 15.0%
!! ATAAGATAATAGTTTGATAT+TGG - chr2_4:61907120-61907139 None:intergenic 15.0%
!!! TAATTTTTTAAGTGACATTT+TGG + chr2_4:61908842-61908861 Msa0340550:intron 15.0%
!! AATATTAATAACAATGAGAA+AGG + chr2_4:61909266-61909285 Msa0340550:intron 15.0%
!! ATATTAATAACAATGAGAAA+GGG + chr2_4:61909267-61909286 Msa0340550:intron 15.0%
!!! TTTCAATTATATTGATGATT+TGG - chr2_4:61909479-61909498 None:intergenic 15.0%
!!! TTATGCACTTATTTTATTTG+AGG + chr2_4:61906632-61906651 Msa0340550:intron 20.0%
!!! TTATTTTTTTTTTAGCCTTG+GGG + chr2_4:61906921-61906940 Msa0340550:intron 20.0%
!!! TTTGTAGTTTTTTTCTTCTT+AGG + chr2_4:61906981-61907000 Msa0340550:intron 20.0%
!!! TTGTAGTTTTTTTCTTCTTA+GGG + chr2_4:61906982-61907001 Msa0340550:intron 20.0%
!!! GATATCATTTTCTATAAGAA+CGG - chr2_4:61907346-61907365 None:intergenic 20.0%
!! GCTAGAAAATTATTTCATTT+AGG + chr2_4:61907399-61907418 Msa0340550:intron 20.0%
!! AATAATTTGATCATAGTTGA+CGG + chr2_4:61907444-61907463 Msa0340550:intron 20.0%
!! ATAAGATAATAGTTTGACAT+TGG - chr2_4:61907768-61907787 None:intergenic 20.0%
!! GCTAGAAAATTATTTCATAT+AGG + chr2_4:61908047-61908066 Msa0340550:intron 20.0%
!! ATTAGGAATCTAATGAATAA+TGG + chr2_4:61908673-61908692 Msa0340550:CDS 20.0%
!! ACAATTTGAGAAAATACAAA+TGG - chr2_4:61909563-61909582 None:intergenic 20.0%
!!! GTATTTTCTCAAATTGTTTT+TGG + chr2_4:61909566-61909585 Msa0340550:intron 20.0%
!! TTCATTATTAATTGAAGCAT+AGG + chr2_4:61909696-61909715 Msa0340550:intron 20.0%
!! AACTTGGTTAAGTTTTTCTT+CGG - chr2_4:61906443-61906462 None:intergenic 25.0%
!! TTTTTACCTTGAGAGATAAA+TGG - chr2_4:61906543-61906562 None:intergenic 25.0%
!!! TTGTTTCTAATAAGCTATCT+AGG + chr2_4:61906723-61906742 Msa0340550:intron 25.0%
!!! TATTTTTTTTTTAGCCTTGG+GGG + chr2_4:61906922-61906941 Msa0340550:intron 25.0%
!!! TGTAGTTTTTTTCTTCTTAG+GGG + chr2_4:61906983-61907002 Msa0340550:intron 25.0%
!!! GCTTTTTTCATAAGTTATTC+TGG + chr2_4:61907149-61907168 Msa0340550:intron 25.0%
! CAGTACTACTTAATACTTAT+AGG - chr2_4:61907477-61907496 None:intergenic 25.0%
! ACTGACACTTAAAAGATTAA+AGG + chr2_4:61907493-61907512 Msa0340550:intron 25.0%
! CTTAAAAGATTAAAGGTCTT+AGG + chr2_4:61907500-61907519 Msa0340550:intron 25.0%
! GATTAAAGGTCTTAAGAATT+AGG + chr2_4:61908148-61908167 Msa0340550:intron 25.0%
! TAGTTAGAATTATTAGCTAC+TGG - chr2_4:61908318-61908337 None:intergenic 25.0%
!! GGATTTGATAATTGTAACAT+AGG + chr2_4:61908369-61908388 Msa0340550:intron 25.0%
! AATATAGTGTCAGAATACAA+TGG - chr2_4:61908448-61908467 None:intergenic 25.0%
!!! TTATTTGCAAGTTGGTAATA+CGG + chr2_4:61908576-61908595 Msa0340550:CDS 25.0%
! ACTTTCTGAACAAATTTATC+AGG - chr2_4:61908754-61908773 None:intergenic 25.0%
!! ATGTGAGTTTTCAAATTGTA+TGG + chr2_4:61908785-61908804 Msa0340550:intron 25.0%
! TAAATTTGTAGTGTCTTGTA+TGG + chr2_4:61908895-61908914 Msa0340550:intron 25.0%
! AAATTTGTAGTGTCTTGTAT+GGG + chr2_4:61908896-61908915 Msa0340550:intron 25.0%
!! TTCATTTTCATCATTTCTAC+TGG + chr2_4:61909037-61909056 Msa0340550:intron 25.0%
! CAACAAGCATAAAAGTAATT+TGG - chr2_4:61909108-61909127 None:intergenic 25.0%
!!! CAAATTACTTTTATGCTTGT+TGG + chr2_4:61909106-61909125 Msa0340550:intron 25.0%
! AGTACAAATGATCTTATCAA+CGG - chr2_4:61909237-61909256 None:intergenic 25.0%
! TTTCCTTATTGCGAAAATAA+TGG + chr2_4:61909327-61909346 Msa0340550:intron 25.0%
! CTTCAATTAATAATGAAGAG+TGG - chr2_4:61909693-61909712 None:intergenic 25.0%
ATGAAGGAAGATTGTGATTT+GGG - chr2_4:61906170-61906189 None:intergenic 30.0%
AATGAAGGAAGATTGTGATT+TGG - chr2_4:61906171-61906190 None:intergenic 30.0%
!!! GTTTCTTGTTTTTGCATGAA+CGG - chr2_4:61906354-61906373 None:intergenic 30.0%
! TCTTTGGAAATTACCATTGA+AGG - chr2_4:61906379-61906398 None:intergenic 30.0%
AATAACTTGAACGCTTTCTT+TGG - chr2_4:61906395-61906414 None:intergenic 30.0%
TTCTCAAGTCTAAATTGCTT+AGG + chr2_4:61906461-61906480 Msa0340550:CDS 30.0%
ATCACAATTAAAACCCTGTT+TGG + chr2_4:61906562-61906581 Msa0340550:intron 30.0%
ATTAAAACCCTGTTTGGTTA+AGG + chr2_4:61906568-61906587 Msa0340550:intron 30.0%
ACAAGTTGCAAACAACTTAT+AGG - chr2_4:61906707-61906726 None:intergenic 30.0%
TTCTAATAAGCTATCTAGGA+CGG + chr2_4:61906727-61906746 Msa0340550:intron 30.0%
! TTTTGCAATTGTAGCAGTTT+TGG - chr2_4:61906948-61906967 None:intergenic 30.0%
TGCTACAATTGCAAAACTTA+GGG + chr2_4:61906952-61906971 Msa0340550:intron 30.0%
!!! GTAGTTTTTTTCTTCTTAGG+GGG + chr2_4:61906984-61907003 Msa0340550:intron 30.0%
!! ATATTGGCTTTGTTTGGAAT+TGG - chr2_4:61907104-61907123 None:intergenic 30.0%
!! AGTTTGATATTGGCTTTGTT+TGG - chr2_4:61907110-61907129 None:intergenic 30.0%
AATAAGCTGAAAACTACTCA+CGG + chr2_4:61907184-61907203 Msa0340550:intron 30.0%
GTTAGTCACTAGTGTAATTA+GGG - chr2_4:61907300-61907319 None:intergenic 30.0%
AGTTAGTCACTAGTGTAATT+AGG - chr2_4:61907301-61907320 None:intergenic 30.0%
ATTAAAGGTCTTAGGATTGA+AGG + chr2_4:61907508-61907527 Msa0340550:intron 30.0%
CTAATTAGGGTTGTTTGAAT+TGG - chr2_4:61907935-61907954 None:intergenic 30.0%
! GTTAGTCACTAGTCTAATTA+GGG - chr2_4:61907948-61907967 None:intergenic 30.0%
! AGTTAGTCACTAGTCTAATT+AGG - chr2_4:61907949-61907968 None:intergenic 30.0%
CAACAGAACTTCTAATTAGT+TGG - chr2_4:61908016-61908035 None:intergenic 30.0%
AATAATTTGACCGTAGTTGA+AGG + chr2_4:61908092-61908111 Msa0340550:intron 30.0%
AGGTTAATATCCTTCAACTA+CGG - chr2_4:61908105-61908124 None:intergenic 30.0%
GAAGGATATTAACCTATATG+TGG + chr2_4:61908110-61908129 Msa0340550:intron 30.0%
! ACCTTTAATCTTTCAAGTGT+CGG - chr2_4:61908138-61908157 None:intergenic 30.0%
GTCTTAAGAATTAGGATTGA+AGG + chr2_4:61908156-61908175 Msa0340550:intron 30.0%
AAAGAACAAGATGATTGAGA+TGG + chr2_4:61908477-61908496 Msa0340550:CDS 30.0%
! TTCAATCAAGTTGTGGAAAA+GGG + chr2_4:61908511-61908530 Msa0340550:CDS 30.0%
ATAGTGAATGTCAATGAATC+CGG - chr2_4:61908649-61908668 None:intergenic 30.0%
! TGACATTCACTATACTGATT+AGG + chr2_4:61908656-61908675 Msa0340550:CDS 30.0%
CAAGTACATCACAAACTATA+AGG - chr2_4:61908875-61908894 None:intergenic 30.0%
TATCTAATTTCCTGCATTGA+TGG + chr2_4:61908997-61909016 Msa0340550:intron 30.0%
! ATCTAATTTCCTGCATTGAT+GGG + chr2_4:61908998-61909017 Msa0340550:intron 30.0%
! ATTTTCATCATTTCTACTGG+AGG + chr2_4:61909040-61909059 Msa0340550:intron 30.0%
!! ATTACTTTTATGCTTGTTGG+CGG + chr2_4:61909109-61909128 Msa0340550:intron 30.0%
TACATCAATACAACCGAAAT+TGG - chr2_4:61909141-61909160 None:intergenic 30.0%
AGCATCACTAGTATATAGAT+TGG - chr2_4:61909211-61909230 None:intergenic 30.0%
! ACACCATTATTTTCGCAATA+AGG - chr2_4:61909333-61909352 None:intergenic 30.0%
!! TAATGGTGTAGAATTTTAGC+TGG + chr2_4:61909344-61909363 Msa0340550:intron 30.0%
GAGAAAATACAAATGGTTGA+AGG - chr2_4:61909556-61909575 None:intergenic 30.0%
AGAGCTTATTATTAGTGATG+AGG + chr2_4:61909723-61909742 Msa0340550:CDS 30.0%
TGAAGGAAGATTGTGATTTG+GGG - chr2_4:61906169-61906188 None:intergenic 35.0%
GATGAAAATTGAAGTAGCAG+CGG - chr2_4:61906208-61906227 None:intergenic 35.0%
AAGCGCATGGATATTTCAAA+CGG + chr2_4:61906249-61906268 Msa0340550:CDS 35.0%
!! TTGTTGGTGGTTGAATTTGA+GGG - chr2_4:61906289-61906308 None:intergenic 35.0%
AAAGCAACAACAGTAGTATG+CGG + chr2_4:61906325-61906344 Msa0340550:CDS 35.0%
AAACAAGAAACCACCTTCAA+TGG + chr2_4:61906363-61906382 Msa0340550:CDS 35.0%
TTGGAAATTACCATTGAAGG+TGG - chr2_4:61906376-61906395 None:intergenic 35.0%
GCAATTTAGACTTGAGAACT+TGG - chr2_4:61906459-61906478 None:intergenic 35.0%
!!! GCCTGATGTTTTAATTGTCT+TGG + chr2_4:61906492-61906511 Msa0340550:CDS 35.0%
GCCAAGACAATTAAAACATC+AGG - chr2_4:61906496-61906515 None:intergenic 35.0%
GCTTAAACCTTAACCAAACA+GGG - chr2_4:61906578-61906597 None:intergenic 35.0%
TGCTTAAACCTTAACCAAAC+AGG - chr2_4:61906579-61906598 None:intergenic 35.0%
CTGCTACAATTGCAAAACTT+AGG + chr2_4:61906951-61906970 Msa0340550:intron 35.0%
GCTACAATTGCAAAACTTAG+GGG + chr2_4:61906953-61906972 Msa0340550:intron 35.0%
CTACAATTGCAAAACTTAGG+GGG + chr2_4:61906954-61906973 Msa0340550:intron 35.0%
CAGCAGAACTTCTAATTAGT+TGG - chr2_4:61907368-61907387 None:intergenic 35.0%
ACAGACATAGAAATGATCGA+AGG - chr2_4:61907570-61907589 None:intergenic 35.0%
! CAACTTGCTTCCAATTAACT+AGG + chr2_4:61907625-61907644 Msa0340550:intron 35.0%
TTGCTTCCAATTAACTAGGA+TGG + chr2_4:61907629-61907648 Msa0340550:intron 35.0%
TGCTTCCAATTAACTAGGAT+GGG + chr2_4:61907630-61907649 Msa0340550:intron 35.0%
CATAACCCATCCTAGTTAAT+TGG - chr2_4:61907638-61907657 None:intergenic 35.0%
!! CAATTAACTAGGATGGGTTA+TGG + chr2_4:61907636-61907655 Msa0340550:intron 35.0%
ACCGACACTTGAAAGATTAA+AGG + chr2_4:61908134-61908153 Msa0340550:intron 35.0%
! ATTAGGATTGAAGGTGTGTT+TGG + chr2_4:61908165-61908184 Msa0340550:intron 35.0%
! AAGCAGTCACAAAGTATTAC+CGG + chr2_4:61908206-61908225 Msa0340550:intron 35.0%
TATTACCGGTGTTTATGTGT+GGG + chr2_4:61908220-61908239 Msa0340550:intron 35.0%
CGAGTTTATTATCAGTGATG+AGG + chr2_4:61908396-61908415 Msa0340550:CDS 35.0%
TTCTGACACTATATTGTTGC+TGG + chr2_4:61908453-61908472 Msa0340550:CDS 35.0%
TCTGACACTATATTGTTGCT+GGG + chr2_4:61908454-61908473 Msa0340550:CDS 35.0%
! AGAGATGTTCAATCAAGTTG+TGG + chr2_4:61908504-61908523 Msa0340550:CDS 35.0%
! GTTCAATCAAGTTGTGGAAA+AGG + chr2_4:61908510-61908529 Msa0340550:CDS 35.0%
! TCAATCAAGTTGTGGAAAAG+GGG + chr2_4:61908512-61908531 Msa0340550:CDS 35.0%
AGGTTGTTCAATGAGATGAT+CGG + chr2_4:61908550-61908569 Msa0340550:CDS 35.0%
! GAATAATGGAGAACATGAAC+TGG + chr2_4:61908687-61908706 Msa0340550:CDS 35.0%
!!! AGATTGACGTGTCTCTTTTT+TGG - chr2_4:61908974-61908993 None:intergenic 35.0%
AAAAAAGAGACACGTCAATC+TGG + chr2_4:61908973-61908992 Msa0340550:intron 35.0%
! TCTAATTTCCTGCATTGATG+GGG + chr2_4:61908999-61909018 Msa0340550:intron 35.0%
GAAATTGTAGCTCAAATGTC+TGG - chr2_4:61909086-61909105 None:intergenic 35.0%
ATGTAGTGTGTGAATGTGAT+AGG + chr2_4:61909156-61909175 Msa0340550:intron 35.0%
TGAATGTGATAGGTACTAAC+TGG + chr2_4:61909166-61909185 Msa0340550:intron 35.0%
ATTATTAGTGATGAGGAAGC+AGG + chr2_4:61909730-61909749 Msa0340550:CDS 35.0%
ATATGATACATTGCTGGAAC+AGG + chr2_4:61909753-61909772 Msa0340550:CDS 35.0%
TTCTGACATGATACTGTTGT+TGG + chr2_4:61909780-61909799 Msa0340550:CDS 35.0%
TCTGACATGATACTGTTGTT+GGG + chr2_4:61909781-61909800 Msa0340550:CDS 35.0%
AAGGAACAAGATGATTGAGA+TGG + chr2_4:61909804-61909823 Msa0340550:CDS 35.0%
! GAAGGAAGATTGTGATTTGG+GGG - chr2_4:61906168-61906187 None:intergenic 40.0%
! GTTTGAAATATCCATGCGCT+TGG - chr2_4:61906250-61906269 None:intergenic 40.0%
!! GTTGTTGGTGGTTGAATTTG+AGG - chr2_4:61906290-61906309 None:intergenic 40.0%
! TCTTCTGTTGTTGTTGTTGG+TGG - chr2_4:61906302-61906321 None:intergenic 40.0%
! GCTTCTTCTGTTGTTGTTGT+TGG - chr2_4:61906305-61906324 None:intergenic 40.0%
!!! TCTTGTTTTTGCATGAACGG+AGG - chr2_4:61906351-61906370 None:intergenic 40.0%
CCTTGAGAGATAAATGGAGT+TGG - chr2_4:61906537-61906556 None:intergenic 40.0%
CCAACTCCATTTATCTCTCA+AGG + chr2_4:61906534-61906553 Msa0340550:CDS 40.0%
! ACTGCAACTTTGGGAAGTTA+GGG - chr2_4:61906828-61906847 None:intergenic 40.0%
! AACTGCAACTTTGGGAAGTT+AGG - chr2_4:61906829-61906848 None:intergenic 40.0%
! ACTTCCCAAAGTTGCAGTTT+TGG + chr2_4:61906830-61906849 Msa0340550:intron 40.0%
AGCATAGACCGAGTCAAAAT+TGG - chr2_4:61906865-61906884 None:intergenic 40.0%
! CTTAGGATTGAAGGTGTGTT+TGG + chr2_4:61907517-61907536 Msa0340550:intron 40.0%
GTATTACCGGTGTTTATGTG+TGG + chr2_4:61908219-61908238 Msa0340550:intron 40.0%
TGATACCCACACATAAACAC+CGG - chr2_4:61908228-61908247 None:intergenic 40.0%
ATTATCAGTGATGAGGAAGC+TGG + chr2_4:61908403-61908422 Msa0340550:CDS 40.0%
TTATCAGTGATGAGGAAGCT+GGG + chr2_4:61908404-61908423 Msa0340550:CDS 40.0%
AGGAAGCTGGGTATGATAAA+TGG + chr2_4:61908416-61908435 Msa0340550:CDS 40.0%
GAACAAGATGATTGAGATGG+CGG + chr2_4:61908480-61908499 Msa0340550:CDS 40.0%
TCATTGAACAACCTCGTATC+TGG - chr2_4:61908544-61908563 None:intergenic 40.0%
GGTTGTTCAATGAGATGATC+GGG + chr2_4:61908551-61908570 Msa0340550:CDS 40.0%
GTTGTTCAATGAGATGATCG+GGG + chr2_4:61908552-61908571 Msa0340550:CDS 40.0%
ATCGGGGTTTATTTGCAAGT+TGG + chr2_4:61908568-61908587 Msa0340550:CDS 40.0%
GAAAACTCACATGTTTCAGC+TGG - chr2_4:61908777-61908796 None:intergenic 40.0%
GTCTTGTATGGGAAGAGTAA+TGG + chr2_4:61908907-61908926 Msa0340550:intron 40.0%
! AACTGGCATGGTTAGTTAGT+TGG + chr2_4:61909183-61909202 Msa0340550:intron 40.0%
AAACTGCAACTGTACACAGA+CGG - chr2_4:61909408-61909427 None:intergenic 40.0%
! TTGGTGTTTATGTGCCGATA+TGG + chr2_4:61909585-61909604 Msa0340550:intron 40.0%
! ATGTGCCGATATGGTGTATA+TGG + chr2_4:61909594-61909613 Msa0340550:intron 40.0%
GGACACCATATACACCATAT+CGG - chr2_4:61909602-61909621 None:intergenic 40.0%
ATATGGTGTATATGGTGTCC+AGG + chr2_4:61909602-61909621 Msa0340550:intron 40.0%
! GTGAAGCATTAACACATACC+TGG - chr2_4:61909623-61909642 None:intergenic 40.0%
! GACTTAGAGTGATTAGCTAC+TGG - chr2_4:61909665-61909684 None:intergenic 40.0%
AGCAGGATATGATACATTGC+TGG + chr2_4:61909747-61909766 Msa0340550:CDS 40.0%
ACATGATACTGTTGTTGGGA+AGG + chr2_4:61909785-61909804 Msa0340550:CDS 40.0%
TGGCAGAAGAGATGTTCAAT+CGG + chr2_4:61909824-61909843 Msa0340550:CDS 40.0%
ATTTGGGGGAAGAGAGGTTT+CGG - chr2_4:61906154-61906173 None:intergenic 45.0%
! ATTGTGATTTGGGGGAAGAG+AGG - chr2_4:61906160-61906179 None:intergenic 45.0%
GAGCGTGTTCAGTTGAATGA+AGG - chr2_4:61906186-61906205 None:intergenic 45.0%
TGATACTAAGACCAAGCGCA+TGG + chr2_4:61906236-61906255 Msa0340550:CDS 45.0%
TGGTGGTTGAATTTGAGGGT+GGG - chr2_4:61906285-61906304 None:intergenic 45.0%
! TTGGTGGTTGAATTTGAGGG+TGG - chr2_4:61906286-61906305 None:intergenic 45.0%
! TGCAACTTTGGGAAGTTAGG+GGG - chr2_4:61906826-61906845 None:intergenic 45.0%
! CTGCAACTTTGGGAAGTTAG+GGG - chr2_4:61906827-61906846 None:intergenic 45.0%
!! CGAGTCAAAATTGGCCTTAG+GGG - chr2_4:61906856-61906875 None:intergenic 45.0%
!! CCGAGTCAAAATTGGCCTTA+GGG - chr2_4:61906857-61906876 None:intergenic 45.0%
!!! CCCTAAGGCCAATTTTGACT+CGG + chr2_4:61906854-61906873 Msa0340550:intron 45.0%
!! ACCGAGTCAAAATTGGCCTT+AGG - chr2_4:61906858-61906877 None:intergenic 45.0%
TAACACGTAGCACCTCACTT+AGG - chr2_4:61906897-61906916 None:intergenic 45.0%
!! CAAGTGTCGGTACCACATAT+AGG - chr2_4:61908125-61908144 None:intergenic 45.0%
!! GCAAGTTGGTAATACGGAGA+AGG + chr2_4:61908582-61908601 Msa0340550:CDS 45.0%
GGAGGTTTACAGATCCATGA+AGG + chr2_4:61908609-61908628 Msa0340550:CDS 45.0%
TACAGATCCATGAAGGCTTC+AGG + chr2_4:61908616-61908635 Msa0340550:CDS 45.0%
ACAGATCCATGAAGGCTTCA+GGG + chr2_4:61908617-61908636 Msa0340550:CDS 45.0%
AAGTAGAACCCCATCAATGC+AGG - chr2_4:61909010-61909029 None:intergenic 45.0%
TACTGGAGGAGATTCACACT+GGG + chr2_4:61909054-61909073 Msa0340550:intron 45.0%
GTGATAGGTACTAACTGGCA+TGG + chr2_4:61909171-61909190 Msa0340550:intron 45.0%
AACTGCAACTGTACACAGAC+GGG - chr2_4:61909407-61909426 None:intergenic 45.0%
AAATGTCTCCTAACTCCCAC+TGG + chr2_4:61909502-61909521 Msa0340550:intron 45.0%
TGTCTTCGTCAAACACCAGT+GGG - chr2_4:61909520-61909539 None:intergenic 45.0%
GGCAGAAGAGATGTTCAATC+GGG + chr2_4:61909825-61909844 Msa0340550:CDS 45.0%
AGAAGAGATGTTCAATCGGG+TGG + chr2_4:61909828-61909847 Msa0340550:CDS 45.0%
TTCAATCGGGTGGTTGAAAC+TGG + chr2_4:61909838-61909857 Msa0340550:CDS 45.0%
!!! TTATTTTTTCATTTTAATTT+TGG + chr2_4:61908348-61908367 Msa0340550:intron 5.0%
GGGGCCAAAACTGCAACTTT+GGG - chr2_4:61906837-61906856 None:intergenic 50.0%
AGGGGCCAAAACTGCAACTT+TGG - chr2_4:61906838-61906857 None:intergenic 50.0%
!! AGTTGCAGTTTTGGCCCCTA+AGG + chr2_4:61906839-61906858 Msa0340550:intron 50.0%
AGGGGTTGAAACCAGATACG+AGG + chr2_4:61908530-61908549 Msa0340550:CDS 50.0%
TGGTAATACGGAGAAGGCGA+TGG + chr2_4:61908588-61908607 Msa0340550:CDS 50.0%
TAATACGGAGAAGGCGATGG+AGG + chr2_4:61908591-61908610 Msa0340550:CDS 50.0%
CAAACACCCTGAAGCCTTCA+TGG - chr2_4:61908626-61908645 None:intergenic 50.0%
CTACTGGAGGAGATTCACAC+TGG + chr2_4:61909053-61909072 Msa0340550:intron 50.0%
GTCAAACACCAGTGGGAGTT+AGG - chr2_4:61909513-61909532 None:intergenic 50.0%
GTGTCTTCGTCAAACACCAG+TGG - chr2_4:61909521-61909540 None:intergenic 50.0%
GGTGGTTGAAACTGGAAACG+AGG + chr2_4:61909846-61909865 Msa0340550:CDS 50.0%
!! TGACTCGGTCTATGCTGACG+TGG + chr2_4:61906869-61906888 Msa0340550:intron 55.0%
!! TGTAGCAGTTTTGGCCCCCA+AGG - chr2_4:61906939-61906958 None:intergenic 55.0%
! GAAGGCTTCAGGGTGTTTGC+CGG + chr2_4:61908627-61908646 Msa0340550:CDS 55.0%
TTGGCGGCGACTGCCAATTT+CGG + chr2_4:61909125-61909144 Msa0340550:intron 55.0%
GCTGACGTGGCACCTAAGTG+AGG + chr2_4:61906882-61906901 Msa0340550:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 61906125 61909879 61906125 ID=Msa0340550;Name=Msa0340550
chr2_4 mRNA 61906125 61909879 61906125 ID=Msa0340550-mRNA-1;Parent=Msa0340550;Name=Msa0340550-mRNA-1;_AED=0.27;_eAED=0.27;_QI=110|0.5|0.66|1|1|1|3|0|292
chr2_4 exon 61906125 61906555 61906125 ID=Msa0340550-mRNA-1:exon:19609;Parent=Msa0340550-mRNA-1
chr2_4 exon 61908391 61908786 61908391 ID=Msa0340550-mRNA-1:exon:19610;Parent=Msa0340550-mRNA-1
chr2_4 exon 61909718 61909879 61909718 ID=Msa0340550-mRNA-1:exon:19611;Parent=Msa0340550-mRNA-1
chr2_4 five_prime_UTR 61906125 61906234 61906125 ID=Msa0340550-mRNA-1:five_prime_utr;Parent=Msa0340550-mRNA-1
chr2_4 CDS 61906235 61906555 61906235 ID=Msa0340550-mRNA-1:cds;Parent=Msa0340550-mRNA-1
chr2_4 CDS 61908391 61908786 61908391 ID=Msa0340550-mRNA-1:cds;Parent=Msa0340550-mRNA-1
chr2_4 CDS 61909718 61909879 61909718 ID=Msa0340550-mRNA-1:cds;Parent=Msa0340550-mRNA-1
Gene Sequence

>Msa0340550

ATGATACTAAGACCAAGCGCATGGATATTTCAAACGGAATTGCTTTTCCCACCCTCAAATTCAACCACCAACAACAACAACAGAAGAAGCAAAGCAACAACAGTAGTATGCGGCCTCCGTTCATGCAAAAACAAGAAACCACCTTCAATGGTAATTTCCAAAGAAAGCGTTCAAGTTATTCACGCTCTCAAACTCGCTAAAAATTCCGAAGAAAAACTTAACCAAGTTCTCAAGTCTAAATTGCTTAGGTTATTGAAGCCTGATGTTTTAATTGTCTTGGCTGAATTGCATAGACAAAACCAACTCCATTTATCTCTCAAGGTTTTCGAGTTTATTATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGGTTTATTTGCAAGTTGGTAATACGGAGAAGGCGATGGAGGTTTACAGATCCATGAAGGCTTCAGGGTGTTTGCCGGATTCATTGACATTCACTATACTGATTAGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGGTGTATTCTGACATGATACTGTTGTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGGTTGTTAAATGA

Protein sequence

>Msa0340550

MILRPSAWIFQTELLFPPSNSTTNNNNRRSKATTVVCGLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDSLTFTILIRNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQVYSDMILLLGRNKMIEMAEEMFNRVVETGNEVVK*