Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055940 | sp|Q9SL95|MOT1_ARATH | 66.287 | 439 | 132 | 4 | 39 | 475 | 23 | 447 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055940 | A0A072VDZ3 | 97.727 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 0.0 | 954 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007370 | Msa0055940 | 0.968210 | 2.357289e-128 | -8.615850e-47 |
| Msa0011450 | Msa0055940 | -0.810453 | 1.144074e-50 | -8.615850e-47 |
| Msa0055830 | Msa0055940 | 0.956263 | 4.450260e-114 | -8.615850e-47 |
| Msa0055940 | Msa0120160 | -0.803513 | 3.362782e-49 | -8.615850e-47 |
| Msa0055940 | Msa0132000 | 0.800236 | 1.584029e-48 | -8.615850e-47 |
| Msa0055940 | Msa0151510 | -0.815178 | 1.055998e-51 | -8.615850e-47 |
| Msa0055940 | Msa0198990 | 0.851327 | 9.542566e-61 | -8.615850e-47 |
| Msa0055940 | Msa0225190 | -0.815961 | 7.068534e-52 | -8.615850e-47 |
| Msa0055940 | Msa0241750 | 0.857441 | 1.628625e-62 | -8.615850e-47 |
| Msa0055940 | Msa0262350 | -0.812374 | 4.377716e-51 | -8.615850e-47 |
| Msa0055940 | Msa0279810 | 0.816268 | 6.037668e-52 | -8.615850e-47 |
| Msa0055940 | Msa0300130 | -0.805111 | 1.563087e-49 | -8.615850e-47 |
| Msa0055940 | Msa0302200 | 0.814209 | 1.731160e-51 | -8.615850e-47 |
| Msa0055940 | Msa0313900 | 0.814366 | 1.598314e-51 | -8.615850e-47 |
| Msa0055940 | Msa0319220 | 0.824743 | 6.841948e-54 | -8.615850e-47 |
| Msa0055940 | Msa0339530 | 0.810553 | 1.088601e-50 | -8.615850e-47 |
| Msa0055940 | Msa0345050 | 0.801437 | 9.009564e-49 | -8.615850e-47 |
| Msa0055940 | Msa0397420 | -0.813098 | 3.040278e-51 | -8.615850e-47 |
| Msa0055940 | Msa0412790 | 0.814405 | 1.566955e-51 | -8.615850e-47 |
| Msa0055940 | Msa0420610 | 0.811842 | 5.719625e-51 | -8.615850e-47 |
| Msa0055940 | Msa0457560 | 0.800206 | 1.606723e-48 | -8.615850e-47 |
| Msa0055940 | Msa0512630 | 0.829194 | 5.899857e-55 | -8.615850e-47 |
| Msa0055940 | Msa0559650 | -0.810187 | 1.305438e-50 | -8.615850e-47 |
| Msa0055940 | Msa0596840 | 0.804491 | 2.106085e-49 | -8.615850e-47 |
| Msa0055940 | Msa0603310 | 0.803592 | 3.238807e-49 | -8.615850e-47 |
| Msa0055940 | Msa0654490 | -0.806831 | 6.795980e-50 | -8.615850e-47 |
| Msa0055940 | Msa0674480 | 0.807320 | 5.353684e-50 | -8.615850e-47 |
| Msa0055940 | Msa0800180 | 0.800292 | 1.543101e-48 | -8.615850e-47 |
| Msa0055940 | Msa0842750 | 0.807851 | 4.130124e-50 | -8.615850e-47 |
| Msa0055940 | Msa0853200 | -0.806190 | 9.279566e-50 | -8.615850e-47 |
| Msa0055940 | Msa0882480 | -0.819739 | 9.915146e-53 | -8.615850e-47 |
| Msa0055940 | Msa0901290 | 0.801956 | 7.049291e-49 | -8.615850e-47 |
| Msa0055940 | Msa0935840 | -0.819791 | 9.649240e-53 | -8.615850e-47 |
| Msa0055940 | Msa0964400 | -0.802962 | 4.373658e-49 | -8.615850e-47 |
| Msa0055940 | Msa1002550 | -0.801031 | 1.090895e-48 | -8.615850e-47 |
| Msa0055940 | Msa1092310 | 0.808232 | 3.426476e-50 | -8.615850e-47 |
| Msa0055940 | Msa1130150 | -0.801105 | 1.053240e-48 | -8.615850e-47 |
| Msa0055940 | Msa1150280 | 0.800277 | 1.554272e-48 | -8.615850e-47 |
| Msa0055940 | Msa1156720 | 0.801975 | 6.985353e-49 | -8.615850e-47 |
| Msa0055940 | Msa1193940 | 0.815960 | 7.072993e-52 | -8.615850e-47 |
| Msa0055940 | Msa1203650 | 0.821023 | 5.032778e-53 | -8.615850e-47 |
| Msa0055940 | Msa1268360 | 0.805284 | 1.437801e-49 | -8.615850e-47 |
| Msa0055940 | Msa1268390 | 0.807736 | 4.369466e-50 | -8.615850e-47 |
| Msa0055940 | Msa1289050 | 0.807590 | 4.692273e-50 | -8.615850e-47 |
| Msa0055940 | Msa1289090 | 0.804625 | 1.974718e-49 | -8.615850e-47 |
| Msa0055940 | Msa1408390 | 0.820562 | 6.422758e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055940 | MtrunA17_Chr1g0148451 | 97.727 | 484 | 8 | 1 | 1 | 484 | 1 | 481 | 0.0 | 954 |
| Msa0055940 | MtrunA17_Chr3g0105081 | 81.237 | 485 | 86 | 4 | 1 | 482 | 1 | 483 | 0.0 | 746 |
| Msa0055940 | MtrunA17_Chr1g0148521 | 76.582 | 474 | 90 | 4 | 1 | 473 | 1 | 454 | 0.0 | 721 |
| Msa0055940 | MtrunA17_Chr3g0138591 | 70.474 | 464 | 130 | 2 | 19 | 481 | 1 | 458 | 0.0 | 629 |
| Msa0055940 | MtrunA17_Chr4g0003941 | 56.325 | 419 | 176 | 3 | 52 | 467 | 37 | 451 | 5.96e-166 | 477 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0055940 | AT2G25680.1 | 66.287 | 439 | 132 | 4 | 39 | 475 | 23 | 447 | 0.0 | 580 |
| Msa0055940 | AT1G80310.1 | 55.501 | 409 | 169 | 6 | 52 | 458 | 31 | 428 | 7.09e-140 | 410 |
Find 117 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTCTGCACTGCATCTT+TGG | 0.095650 | 1_2:+11376079 | None:intergenic |
| CTTCATCACTCCTTTGAATT+TGG | 0.127643 | 1_2:+11375376 | None:intergenic |
| GTAACTGAAAATTCCCTTTC+AGG | 0.152803 | 1_2:+11375084 | None:intergenic |
| GTTGTACATGAAATTAAATT+TGG | 0.217740 | 1_2:-11375243 | Msa0055940:CDS |
| CTCTTTCTTCAAATTTAGTT+TGG | 0.243561 | 1_2:+11374625 | None:intergenic |
| GTAGTAGGAACTATTATTTA+TGG | 0.252827 | 1_2:-11374426 | Msa0055940:three_prime_UTR |
| TGATGAATTTAGTTGGTTCT+TGG | 0.259940 | 1_2:-11375038 | Msa0055940:CDS |
| CTTTGTGTTGGGAATAGTTT+TGG | 0.270595 | 1_2:-11375286 | Msa0055940:CDS |
| TCAAAATGGGCTGAAATTAA+TGG | 0.293645 | 1_2:-11376035 | Msa0055940:CDS |
| GAAGTGATTTCATGAGCTTC+TGG | 0.293932 | 1_2:+11376140 | None:intergenic |
| CTTCCAAAGTCTAAATCTTT+AGG | 0.296255 | 1_2:-11375531 | Msa0055940:CDS |
| TGAAATTCACTAAACAAAAT+TGG | 0.301984 | 1_2:-11375200 | Msa0055940:CDS |
| GGAGGGTGTGTGGCACTTCT+TGG | 0.303917 | 1_2:-11374946 | Msa0055940:CDS |
| CTTGCTAGGGTTCTACTTCT+AGG | 0.308575 | 1_2:-11374495 | Msa0055940:three_prime_UTR |
| ATCATCACTGGTGTCATATA+TGG | 0.310944 | 1_2:-11375801 | Msa0055940:CDS |
| CTAGCAGGACAGTATAAATT+TGG | 0.316271 | 1_2:-11374979 | Msa0055940:CDS |
| TGCTCCGGAAGATGGTAATT+TGG | 0.316459 | 1_2:-11375403 | Msa0055940:CDS |
| AGACCTTGGTTTGGTTTAGA+TGG | 0.323003 | 1_2:-11375504 | Msa0055940:CDS |
| CGCGGCAGCGATTGACTTCA+TGG | 0.332278 | 1_2:+11375758 | None:intergenic |
| TATTTGCACTGCTGTTTCAT+TGG | 0.337708 | 1_2:-11374761 | Msa0055940:CDS |
| TTGGTTTGGTTTAGATGGTT+TGG | 0.344318 | 1_2:-11375499 | Msa0055940:CDS |
| TTTGAATTGAAGGAGGGTTT+TGG | 0.351391 | 1_2:+11376171 | None:intergenic |
| TGCACTGCTGTTTCATTGGT+TGG | 0.352590 | 1_2:-11374757 | Msa0055940:CDS |
| AGTGTCTGCACTGCATCTTT+GGG | 0.354736 | 1_2:+11376080 | None:intergenic |
| CTAAACCAAACCAAGGTCTT+TGG | 0.362770 | 1_2:+11375508 | None:intergenic |
| GCCTTATCAGACAAAGATTT+CGG | 0.369692 | 1_2:-11375735 | Msa0055940:CDS |
| AATTTAGTTGGTTCTTGGTT+TGG | 0.373157 | 1_2:-11375033 | Msa0055940:CDS |
| CTAAACCATCATACTCAATA+TGG | 0.375739 | 1_2:-11376198 | Msa0055940:exon |
| ATTCCCCTCACAACAGATAA+AGG | 0.381862 | 1_2:+11375618 | None:intergenic |
| CCATCCAAATTACCATCTTC+CGG | 0.384151 | 1_2:+11375399 | None:intergenic |
| TCCTACTACTGCTAACTATA+TGG | 0.386968 | 1_2:+11374440 | None:intergenic |
| AGATAGGCTTTGTAACCAAT+TGG | 0.388424 | 1_2:+11376252 | None:intergenic |
| TATTATTGAGAGTAAACATT+AGG | 0.398520 | 1_2:+11374367 | None:intergenic |
| ATTGACTTCATGGGCTGAAC+AGG | 0.399970 | 1_2:+11375768 | None:intergenic |
| ACTAAACAAAATTGGAAGAA+AGG | 0.400604 | 1_2:-11375192 | Msa0055940:CDS |
| GGATCTGATGTTTGAATTGA+AGG | 0.402916 | 1_2:+11376161 | None:intergenic |
| ATAAACCACTTTCTACCATA+TGG | 0.403694 | 1_2:-11374660 | Msa0055940:CDS |
| GTTGGATCAAGTGCTGCTCT+TGG | 0.405444 | 1_2:-11374739 | Msa0055940:CDS |
| TGCAAAATTGGTATTGGGAT+TGG | 0.405472 | 1_2:-11374920 | Msa0055940:CDS |
| CTTGTGGCTGAATGGTTTGT+TGG | 0.410139 | 1_2:+11376110 | None:intergenic |
| GGTGGCGTGCTCTTTGTTCT+CGG | 0.412718 | 1_2:-11375678 | Msa0055940:CDS |
| CTCTTTGTTCTCGGTATCAC+AGG | 0.413494 | 1_2:-11375669 | Msa0055940:CDS |
| TGGCCTAAAGATTTAGACTT+TGG | 0.414440 | 1_2:+11375528 | None:intergenic |
| TTCATTACTTCTATTGAAGA+TGG | 0.415265 | 1_2:+11375219 | None:intergenic |
| TGTTACTTAAGCTAAGGAAT+TGG | 0.417510 | 1_2:-11374690 | Msa0055940:CDS |
| GTGCCAACTTGTCATGGTGC+TGG | 0.439717 | 1_2:-11375006 | Msa0055940:CDS |
| ATCTTTGGGTTTGAAACTTG+TGG | 0.442751 | 1_2:+11376094 | None:intergenic |
| AGAAAAGAATGTGAATTGTT+TGG | 0.443386 | 1_2:+11376275 | None:intergenic |
| TAACTGAAAATTCCCTTTCA+GGG | 0.444301 | 1_2:+11375085 | None:intergenic |
| AACACACCTAAAATCCCAAC+TGG | 0.446139 | 1_2:+11374859 | None:intergenic |
| TTGTCATGTGAGGACTTGCT+AGG | 0.447851 | 1_2:-11374509 | Msa0055940:three_prime_UTR |
| GTATATAGTGGCTAAAAGAT+AGG | 0.457686 | 1_2:+11376236 | None:intergenic |
| TAGTGGTTGTTGCGGTGCTC+CGG | 0.457719 | 1_2:-11375418 | Msa0055940:CDS |
| GCCGAAATCTTTGTCTGATA+AGG | 0.459735 | 1_2:+11375734 | None:intergenic |
| GTTGGGTTGATGAATTTAGT+TGG | 0.465580 | 1_2:-11375045 | Msa0055940:CDS |
| TTAGGCCAAAGACCTTGGTT+TGG | 0.469202 | 1_2:-11375513 | Msa0055940:CDS |
| TATAAATTTGGTGGAAGAAG+TGG | 0.472717 | 1_2:-11374967 | Msa0055940:CDS |
| ATTGTGATTGTTAATGGAGC+TGG | 0.477827 | 1_2:-11375450 | Msa0055940:CDS |
| ATTCCAGCTGTCATTATCTC+TGG | 0.479556 | 1_2:+11375708 | None:intergenic |
| CATCAATTTCAGTGACAGTT+GGG | 0.484371 | 1_2:-11375062 | Msa0055940:CDS |
| GTTTGAAACTTGTGGCTGAA+TGG | 0.492699 | 1_2:+11376102 | None:intergenic |
| AGAGTGAGAGCCAAGACTAT+AGG | 0.494228 | 1_2:+11375984 | None:intergenic |
| GTGGCTGAATGGTTTGTTGG+AGG | 0.495034 | 1_2:+11376113 | None:intergenic |
| AACATTGACAATGGAAGTTG+TGG | 0.498635 | 1_2:+11375150 | None:intergenic |
| GTATGCCATATTGAGTATGA+TGG | 0.500400 | 1_2:+11376193 | None:intergenic |
| AATGGTGCCATGGGTGATCT+TGG | 0.501937 | 1_2:-11376017 | Msa0055940:CDS |
| GGTGCTGTGCCAACTTGTCA+TGG | 0.504890 | 1_2:-11375012 | Msa0055940:CDS |
| ACATCAATTTCAGTGACAGT+TGG | 0.505075 | 1_2:-11375063 | Msa0055940:CDS |
| AATCTTTAGGCCAAAGACCT+TGG | 0.514844 | 1_2:-11375518 | Msa0055940:CDS |
| CATGGTGCTGGTGGACTAGC+AGG | 0.515807 | 1_2:-11374994 | Msa0055940:CDS |
| TTTATGTGTTACTTAAGCTA+AGG | 0.517035 | 1_2:-11374696 | Msa0055940:CDS |
| TGTCATGTGAGGACTTGCTA+GGG | 0.517780 | 1_2:-11374508 | Msa0055940:three_prime_UTR |
| CCAACTTGTCATGGTGCTGG+TGG | 0.520067 | 1_2:-11375003 | Msa0055940:CDS |
| CTGATGTTTGAATTGAAGGA+GGG | 0.521335 | 1_2:+11376165 | None:intergenic |
| GATTCCTTTATCTGTTGTGA+GGG | 0.522285 | 1_2:-11375622 | Msa0055940:CDS |
| TACATATATACCTATAGTCT+TGG | 0.528025 | 1_2:-11375994 | Msa0055940:CDS |
| ATTTGGATGGCCAAATTCAA+AGG | 0.528754 | 1_2:-11375386 | Msa0055940:CDS |
| TAGTAAAGAAGATTCATTTG+TGG | 0.533352 | 1_2:-11374788 | Msa0055940:CDS |
| TCAATGTGGTGCCAAGGTTG+AGG | 0.535731 | 1_2:+11375952 | None:intergenic |
| TGGTTCCATATGGTAGAAAG+TGG | 0.540368 | 1_2:+11374655 | None:intergenic |
| GGCTGAAATTAATGGTGCCA+TGG | 0.548607 | 1_2:-11376027 | Msa0055940:CDS |
| ACCATATAGTTAGCAGTAGT+AGG | 0.551028 | 1_2:-11374441 | Msa0055940:three_prime_UTR |
| GCGGCAGCGATTGACTTCAT+GGG | 0.552618 | 1_2:+11375759 | None:intergenic |
| CAATTGTTTAGAGTATATAG+TGG | 0.553449 | 1_2:+11376224 | None:intergenic |
| CCGGAAGATGGTAATTTGGA+TGG | 0.556838 | 1_2:-11375399 | Msa0055940:CDS |
| GCAGGACAGTATAAATTTGG+TGG | 0.559975 | 1_2:-11374976 | Msa0055940:CDS |
| CAAATTCAAAGGAGTGATGA+AGG | 0.562407 | 1_2:-11375375 | Msa0055940:CDS |
| TGTTGCGGTGCTCCGGAAGA+TGG | 0.568204 | 1_2:-11375411 | Msa0055940:CDS |
| TGATTCCTTTATCTGTTGTG+AGG | 0.568857 | 1_2:-11375623 | Msa0055940:CDS |
| ATGACAGCTGGAATCTTGAC+CGG | 0.569949 | 1_2:-11375699 | Msa0055940:CDS |
| CCACCAGCACCATGACAAGT+TGG | 0.570149 | 1_2:+11375003 | None:intergenic |
| CTTGGCTCTCACTCTAGCTA+AGG | 0.577324 | 1_2:-11375976 | Msa0055940:CDS |
| CATGAAGTCAATCGCTGCCG+CGG | 0.579851 | 1_2:-11375757 | Msa0055940:CDS |
| AAATTTGGTGGAAGAAGTGG+AGG | 0.580866 | 1_2:-11374964 | Msa0055940:CDS |
| ATTCCTTTATCTGTTGTGAG+GGG | 0.583159 | 1_2:-11375621 | Msa0055940:CDS |
| CTAGCTAAGGACCTCAACCT+TGG | 0.586821 | 1_2:-11375963 | Msa0055940:CDS |
| GGTGTCTACAACATCATCAC+TGG | 0.588180 | 1_2:-11375813 | Msa0055940:CDS |
| TATCACAGGATTGATGCAGC+TGG | 0.589104 | 1_2:-11375655 | Msa0055940:CDS |
| TCTGATGTTTGAATTGAAGG+AGG | 0.598428 | 1_2:+11376164 | None:intergenic |
| AATAAAACAAGCACAAACAA+TGG | 0.599249 | 1_2:+11375470 | None:intergenic |
| ACAAAGACTATAAAAGCAGA+AGG | 0.601245 | 1_2:+11375303 | None:intergenic |
| GTGCCAGAGATAATGACAGC+TGG | 0.605476 | 1_2:-11375711 | Msa0055940:CDS |
| TGGAAGAAGTGGAGGGTGTG+TGG | 0.611929 | 1_2:-11374956 | Msa0055940:CDS |
| GAGAACAAAGAGCACGCCAC+CGG | 0.612127 | 1_2:+11375680 | None:intergenic |
| GATAGCATACATAAGTTACA+TGG | 0.625846 | 1_2:+11374395 | None:intergenic |
| ATCTTTGTCTGATAAGGCCG+CGG | 0.630622 | 1_2:+11375740 | None:intergenic |
| ACAGAGTTCAACATTGACAA+TGG | 0.640308 | 1_2:+11375141 | None:intergenic |
| GCTGAAATTAATGGTGCCAT+GGG | 0.646415 | 1_2:-11376026 | Msa0055940:CDS |
| TTCATGGGCTGAACAGGCAT+AGG | 0.650381 | 1_2:+11375774 | None:intergenic |
| ATTCAAAGGAGTGATGAAGG+TGG | 0.653705 | 1_2:-11375372 | Msa0055940:CDS |
| TGAAAATCAATGTGGTGCCA+AGG | 0.655634 | 1_2:+11375946 | None:intergenic |
| ATATGTACCAAGATCACCCA+TGG | 0.656064 | 1_2:+11376010 | None:intergenic |
| AGGGGAATTCAACTAGCACA+AGG | 0.671542 | 1_2:-11375603 | Msa0055940:CDS |
| ACAGCTGGAATCTTGACCGG+TGG | 0.675343 | 1_2:-11375696 | Msa0055940:CDS |
| AATTTGGTGGAAGAAGTGGA+GGG | 0.686532 | 1_2:-11374963 | Msa0055940:CDS |
| AAACCATCTAAACCAAACCA+AGG | 0.711313 | 1_2:+11375501 | None:intergenic |
| TATACCGTTGAAAATCAATG+TGG | 0.718574 | 1_2:+11375938 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | chr1_2:11375217-11375236 | Msa0055940:CDS | 20.0% |
| !! | GTTGTACATGAAATTAAATT+TGG | - | chr1_2:11375430-11375449 | Msa0055940:CDS | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr1_2:11375473-11375492 | Msa0055940:CDS | 20.0% |
| !!! | TGTTTTATTGTGATTGTTAA+TGG | - | chr1_2:11375217-11375236 | Msa0055940:CDS | 20.0% |
| !! | GTTGTACATGAAATTAAATT+TGG | - | chr1_2:11375430-11375449 | Msa0055940:CDS | 20.0% |
| !! | TGAAATTCACTAAACAAAAT+TGG | - | chr1_2:11375473-11375492 | Msa0055940:CDS | 20.0% |
| ! | AGAAAAGAATGTGAATTGTT+TGG | + | chr1_2:11374401-11374420 | None:intergenic | 25.0% |
| !! | CAATTGTTTAGAGTATATAG+TGG | + | chr1_2:11374452-11374471 | None:intergenic | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | chr1_2:11374679-11374698 | Msa0055940:CDS | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | chr1_2:11374828-11374847 | Msa0055940:CDS | 25.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | chr1_2:11375206-11375225 | None:intergenic | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr1_2:11375457-11375476 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | chr1_2:11375481-11375500 | Msa0055940:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | chr1_2:11375493-11375512 | Msa0055940:CDS | 25.0% |
| ! | TAGTAAAGAAGATTCATTTG+TGG | - | chr1_2:11375885-11375904 | Msa0055940:intron | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr1_2:11375977-11375996 | Msa0055940:CDS | 25.0% |
| !!! | AAATTTAGTTTGGACTTTTC+TGG | + | chr1_2:11376041-11376060 | None:intergenic | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | chr1_2:11376051-11376070 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTATTGTCATGTG+AGG | - | chr1_2:11376154-11376173 | Msa0055940:CDS | 25.0% |
| ! | GTAGTAGGAACTATTATTTA+TGG | - | chr1_2:11376247-11376266 | Msa0055940:five_prime_UTR | 25.0% |
| ! | AGAAAAGAATGTGAATTGTT+TGG | + | chr1_2:11374401-11374420 | None:intergenic | 25.0% |
| !! | CAATTGTTTAGAGTATATAG+TGG | + | chr1_2:11374452-11374471 | None:intergenic | 25.0% |
| ! | TACATATATACCTATAGTCT+TGG | - | chr1_2:11374679-11374698 | Msa0055940:CDS | 25.0% |
| ! | TTTCTTATGTAATTCATGTC+CGG | - | chr1_2:11374828-11374847 | Msa0055940:CDS | 25.0% |
| ! | AATAAAACAAGCACAAACAA+TGG | + | chr1_2:11375206-11375225 | None:intergenic | 25.0% |
| ! | TTCATTACTTCTATTGAAGA+TGG | + | chr1_2:11375457-11375476 | None:intergenic | 25.0% |
| ! | ACTAAACAAAATTGGAAGAA+AGG | - | chr1_2:11375481-11375500 | Msa0055940:CDS | 25.0% |
| !!! | TGGAAGAAAGGTTTTATTAA+AGG | - | chr1_2:11375493-11375512 | Msa0055940:CDS | 25.0% |
| ! | TAGTAAAGAAGATTCATTTG+TGG | - | chr1_2:11375885-11375904 | Msa0055940:intron | 25.0% |
| !!! | TTTATGTGTTACTTAAGCTA+AGG | - | chr1_2:11375977-11375996 | Msa0055940:CDS | 25.0% |
| !!! | AAATTTAGTTTGGACTTTTC+TGG | + | chr1_2:11376041-11376060 | None:intergenic | 25.0% |
| ! | CTCTTTCTTCAAATTTAGTT+TGG | + | chr1_2:11376051-11376070 | None:intergenic | 25.0% |
| !!! | AGTTTTTTTATTGTCATGTG+AGG | - | chr1_2:11376154-11376173 | Msa0055940:CDS | 25.0% |
| ! | GTAGTAGGAACTATTATTTA+TGG | - | chr1_2:11376247-11376266 | Msa0055940:five_prime_UTR | 25.0% |
| ! | TTCACATTCTTTTCTCCAAT+TGG | - | chr1_2:11374406-11374425 | Msa0055940:three_prime_UTR | 30.0% |
| GTATATAGTGGCTAAAAGAT+AGG | + | chr1_2:11374440-11374459 | None:intergenic | 30.0% | |
| CTAAACCATCATACTCAATA+TGG | - | chr1_2:11374475-11374494 | Msa0055940:three_prime_UTR | 30.0% | |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | chr1_2:11374624-11374643 | Msa0055940:exon | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | chr1_2:11374625-11374644 | Msa0055940:exon | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | chr1_2:11374637-11374656 | None:intergenic | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | chr1_2:11374638-11374657 | Msa0055940:exon | 30.0% |
| TATACCGTTGAAAATCAATG+TGG | + | chr1_2:11374738-11374757 | None:intergenic | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | chr1_2:11375142-11375161 | Msa0055940:CDS | 30.0% | |
| ACAAAGACTATAAAAGCAGA+AGG | + | chr1_2:11375373-11375392 | None:intergenic | 30.0% | |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | chr1_2:11375375-11375394 | Msa0055940:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | chr1_2:11375376-11375395 | Msa0055940:CDS | 30.0% |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr1_2:11375591-11375610 | None:intergenic | 30.0% | |
| ! | TGATGAATTTAGTTGGTTCT+TGG | - | chr1_2:11375635-11375654 | Msa0055940:CDS | 30.0% |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr1_2:11375640-11375659 | Msa0055940:CDS | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | chr1_2:11375706-11375725 | Msa0055940:CDS | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | chr1_2:11375741-11375760 | Msa0055940:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | chr1_2:11375747-11375766 | Msa0055940:CDS | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | chr1_2:11375748-11375767 | Msa0055940:CDS | 30.0% |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr1_2:11375983-11376002 | Msa0055940:CDS | 30.0% |
| ATAAACCACTTTCTACCATA+TGG | - | chr1_2:11376013-11376032 | Msa0055940:CDS | 30.0% | |
| !!! | TAATATGCTGATTTTCTGTG+AGG | - | chr1_2:11376127-11376146 | Msa0055940:CDS | 30.0% |
| GATAGCATACATAAGTTACA+TGG | + | chr1_2:11376281-11376300 | None:intergenic | 30.0% | |
| ! | TTCACATTCTTTTCTCCAAT+TGG | - | chr1_2:11374406-11374425 | Msa0055940:three_prime_UTR | 30.0% |
| GTATATAGTGGCTAAAAGAT+AGG | + | chr1_2:11374440-11374459 | None:intergenic | 30.0% | |
| CTAAACCATCATACTCAATA+TGG | - | chr1_2:11374475-11374494 | Msa0055940:three_prime_UTR | 30.0% | |
| !!! | ACTTTGTTTTCCGTTCAAAA+TGG | - | chr1_2:11374624-11374643 | Msa0055940:exon | 30.0% |
| !!! | CTTTGTTTTCCGTTCAAAAT+GGG | - | chr1_2:11374625-11374644 | Msa0055940:exon | 30.0% |
| ! | TAATTTCAGCCCATTTTGAA+CGG | + | chr1_2:11374637-11374656 | None:intergenic | 30.0% |
| !! | TCAAAATGGGCTGAAATTAA+TGG | - | chr1_2:11374638-11374657 | Msa0055940:exon | 30.0% |
| TATACCGTTGAAAATCAATG+TGG | + | chr1_2:11374738-11374757 | None:intergenic | 30.0% | |
| CTTCCAAAGTCTAAATCTTT+AGG | - | chr1_2:11375142-11375161 | Msa0055940:CDS | 30.0% | |
| ACAAAGACTATAAAAGCAGA+AGG | + | chr1_2:11375373-11375392 | None:intergenic | 30.0% | |
| ! | TGCTTTTATAGTCTTTGTGT+TGG | - | chr1_2:11375375-11375394 | Msa0055940:CDS | 30.0% |
| ! | GCTTTTATAGTCTTTGTGTT+GGG | - | chr1_2:11375376-11375395 | Msa0055940:CDS | 30.0% |
| TAACTGAAAATTCCCTTTCA+GGG | + | chr1_2:11375591-11375610 | None:intergenic | 30.0% | |
| ! | TGATGAATTTAGTTGGTTCT+TGG | - | chr1_2:11375635-11375654 | Msa0055940:CDS | 30.0% |
| ! | AATTTAGTTGGTTCTTGGTT+TGG | - | chr1_2:11375640-11375659 | Msa0055940:CDS | 30.0% |
| ! | TATAAATTTGGTGGAAGAAG+TGG | - | chr1_2:11375706-11375725 | Msa0055940:CDS | 30.0% |
| !!! | ACTTCTTGGTTTTGCAAAAT+TGG | - | chr1_2:11375741-11375760 | Msa0055940:CDS | 30.0% |
| !! | TGGTTTTGCAAAATTGGTAT+TGG | - | chr1_2:11375747-11375766 | Msa0055940:CDS | 30.0% |
| ! | GGTTTTGCAAAATTGGTATT+GGG | - | chr1_2:11375748-11375767 | Msa0055940:CDS | 30.0% |
| ! | TGTTACTTAAGCTAAGGAAT+TGG | - | chr1_2:11375983-11376002 | Msa0055940:CDS | 30.0% |
| ATAAACCACTTTCTACCATA+TGG | - | chr1_2:11376013-11376032 | Msa0055940:CDS | 30.0% | |
| !!! | TAATATGCTGATTTTCTGTG+AGG | - | chr1_2:11376127-11376146 | Msa0055940:CDS | 30.0% |
| GATAGCATACATAAGTTACA+TGG | + | chr1_2:11376281-11376300 | None:intergenic | 30.0% | |
| ! | AGATAGGCTTTGTAACCAAT+TGG | + | chr1_2:11374424-11374443 | None:intergenic | 35.0% |
| GTATGCCATATTGAGTATGA+TGG | + | chr1_2:11374483-11374502 | None:intergenic | 35.0% | |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | chr1_2:11374505-11374524 | None:intergenic | 35.0% |
| CTGATGTTTGAATTGAAGGA+GGG | + | chr1_2:11374511-11374530 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | chr1_2:11374512-11374531 | None:intergenic | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | chr1_2:11374515-11374534 | None:intergenic | 35.0% | |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | chr1_2:11374582-11374601 | None:intergenic | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | chr1_2:11374872-11374891 | Msa0055940:CDS | 35.0% |
| GCCTTATCAGACAAAGATTT+CGG | - | chr1_2:11374938-11374957 | Msa0055940:CDS | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | chr1_2:11375050-11375069 | Msa0055940:CDS | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | chr1_2:11375051-11375070 | Msa0055940:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | chr1_2:11375052-11375071 | Msa0055940:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | chr1_2:11375148-11375167 | None:intergenic | 35.0% | |
| AAACCATCTAAACCAAACCA+AGG | + | chr1_2:11375175-11375194 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | chr1_2:11375174-11375193 | Msa0055940:CDS | 35.0% |
| ATTGTGATTGTTAATGGAGC+TGG | - | chr1_2:11375223-11375242 | Msa0055940:CDS | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | chr1_2:11375247-11375266 | Msa0055940:CDS | 35.0% | |
| ATTTGGATGGCCAAATTCAA+AGG | - | chr1_2:11375287-11375306 | Msa0055940:CDS | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | chr1_2:11375300-11375319 | None:intergenic | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | chr1_2:11375298-11375317 | Msa0055940:CDS | 35.0% | |
| ! | CTTTGTGTTGGGAATAGTTT+TGG | - | chr1_2:11375387-11375406 | Msa0055940:CDS | 35.0% |
| AACATTGACAATGGAAGTTG+TGG | + | chr1_2:11375526-11375545 | None:intergenic | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | chr1_2:11375535-11375554 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr1_2:11375576-11375595 | Msa0055940:CDS | 35.0% |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr1_2:11375592-11375611 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr1_2:11375610-11375629 | Msa0055940:CDS | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | chr1_2:11375611-11375630 | Msa0055940:CDS | 35.0% | |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | chr1_2:11375628-11375647 | Msa0055940:CDS | 35.0% |
| CTAGCAGGACAGTATAAATT+TGG | - | chr1_2:11375694-11375713 | Msa0055940:CDS | 35.0% | |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | chr1_2:11375753-11375772 | Msa0055940:CDS | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | chr1_2:11375760-11375779 | Msa0055940:CDS | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | chr1_2:11375799-11375818 | Msa0055940:CDS | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | chr1_2:11375800-11375819 | Msa0055940:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | chr1_2:11375808-11375827 | Msa0055940:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | chr1_2:11375912-11375931 | Msa0055940:intron | 35.0% |
| ACCATATAGTTAGCAGTAGT+AGG | - | chr1_2:11376232-11376251 | Msa0055940:five_prime_UTR | 35.0% | |
| TCCTACTACTGCTAACTATA+TGG | + | chr1_2:11376236-11376255 | None:intergenic | 35.0% | |
| ! | AGATAGGCTTTGTAACCAAT+TGG | + | chr1_2:11374424-11374443 | None:intergenic | 35.0% |
| GTATGCCATATTGAGTATGA+TGG | + | chr1_2:11374483-11374502 | None:intergenic | 35.0% | |
| ! | TTTGAATTGAAGGAGGGTTT+TGG | + | chr1_2:11374505-11374524 | None:intergenic | 35.0% |
| CTGATGTTTGAATTGAAGGA+GGG | + | chr1_2:11374511-11374530 | None:intergenic | 35.0% | |
| TCTGATGTTTGAATTGAAGG+AGG | + | chr1_2:11374512-11374531 | None:intergenic | 35.0% | |
| GGATCTGATGTTTGAATTGA+AGG | + | chr1_2:11374515-11374534 | None:intergenic | 35.0% | |
| ! | ATCTTTGGGTTTGAAACTTG+TGG | + | chr1_2:11374582-11374601 | None:intergenic | 35.0% |
| !! | ATCATCACTGGTGTCATATA+TGG | - | chr1_2:11374872-11374891 | Msa0055940:CDS | 35.0% |
| GCCTTATCAGACAAAGATTT+CGG | - | chr1_2:11374938-11374957 | Msa0055940:CDS | 35.0% | |
| TGATTCCTTTATCTGTTGTG+AGG | - | chr1_2:11375050-11375069 | Msa0055940:CDS | 35.0% | |
| GATTCCTTTATCTGTTGTGA+GGG | - | chr1_2:11375051-11375070 | Msa0055940:CDS | 35.0% | |
| ATTCCTTTATCTGTTGTGAG+GGG | - | chr1_2:11375052-11375071 | Msa0055940:CDS | 35.0% | |
| TGGCCTAAAGATTTAGACTT+TGG | + | chr1_2:11375148-11375167 | None:intergenic | 35.0% | |
| AAACCATCTAAACCAAACCA+AGG | + | chr1_2:11375175-11375194 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGTTTAGATGGTT+TGG | - | chr1_2:11375174-11375193 | Msa0055940:CDS | 35.0% |
| ATTGTGATTGTTAATGGAGC+TGG | - | chr1_2:11375223-11375242 | Msa0055940:CDS | 35.0% | |
| CAGAAAAATAGTGGTTGTTG+CGG | - | chr1_2:11375247-11375266 | Msa0055940:CDS | 35.0% | |
| ATTTGGATGGCCAAATTCAA+AGG | - | chr1_2:11375287-11375306 | Msa0055940:CDS | 35.0% | |
| CTTCATCACTCCTTTGAATT+TGG | + | chr1_2:11375300-11375319 | None:intergenic | 35.0% | |
| CAAATTCAAAGGAGTGATGA+AGG | - | chr1_2:11375298-11375317 | Msa0055940:CDS | 35.0% | |
| ! | CTTTGTGTTGGGAATAGTTT+TGG | - | chr1_2:11375387-11375406 | Msa0055940:CDS | 35.0% |
| AACATTGACAATGGAAGTTG+TGG | + | chr1_2:11375526-11375545 | None:intergenic | 35.0% | |
| ACAGAGTTCAACATTGACAA+TGG | + | chr1_2:11375535-11375554 | None:intergenic | 35.0% | |
| ! | AACAGATCTTTTCCCTGAAA+GGG | - | chr1_2:11375576-11375595 | Msa0055940:CDS | 35.0% |
| GTAACTGAAAATTCCCTTTC+AGG | + | chr1_2:11375592-11375611 | None:intergenic | 35.0% | |
| ACATCAATTTCAGTGACAGT+TGG | - | chr1_2:11375610-11375629 | Msa0055940:CDS | 35.0% | |
| CATCAATTTCAGTGACAGTT+GGG | - | chr1_2:11375611-11375630 | Msa0055940:CDS | 35.0% | |
| !! | GTTGGGTTGATGAATTTAGT+TGG | - | chr1_2:11375628-11375647 | Msa0055940:CDS | 35.0% |
| CTAGCAGGACAGTATAAATT+TGG | - | chr1_2:11375694-11375713 | Msa0055940:CDS | 35.0% | |
| ! | TGCAAAATTGGTATTGGGAT+TGG | - | chr1_2:11375753-11375772 | Msa0055940:CDS | 35.0% |
| !!! | TTGGTATTGGGATTGGTTTT+AGG | - | chr1_2:11375760-11375779 | Msa0055940:CDS | 35.0% |
| ! | ATTTTGCAGCAATTTCCAGT+TGG | - | chr1_2:11375799-11375818 | Msa0055940:CDS | 35.0% |
| ! | TTTTGCAGCAATTTCCAGTT+GGG | - | chr1_2:11375800-11375819 | Msa0055940:CDS | 35.0% |
| ! | CAATTTCCAGTTGGGATTTT+AGG | - | chr1_2:11375808-11375827 | Msa0055940:CDS | 35.0% |
| !! | TATTTGCACTGCTGTTTCAT+TGG | - | chr1_2:11375912-11375931 | Msa0055940:intron | 35.0% |
| ACCATATAGTTAGCAGTAGT+AGG | - | chr1_2:11376232-11376251 | Msa0055940:five_prime_UTR | 35.0% | |
| TCCTACTACTGCTAACTATA+TGG | + | chr1_2:11376236-11376255 | None:intergenic | 35.0% | |
| GAAGTGATTTCATGAGCTTC+TGG | + | chr1_2:11374536-11374555 | None:intergenic | 40.0% | |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | chr1_2:11374574-11374593 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | chr1_2:11374647-11374666 | Msa0055940:CDS | 40.0% |
| ATATGTACCAAGATCACCCA+TGG | + | chr1_2:11374666-11374685 | None:intergenic | 40.0% | |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | chr1_2:11374730-11374749 | None:intergenic | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | chr1_2:11374731-11374750 | Msa0055940:CDS | 40.0% |
| ATTCATGTCCGGAATCTTTC+AGG | - | chr1_2:11374839-11374858 | Msa0055940:CDS | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | chr1_2:11374850-11374869 | None:intergenic | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | chr1_2:11374942-11374961 | None:intergenic | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | chr1_2:11374968-11374987 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | chr1_2:11375058-11375077 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | chr1_2:11375155-11375174 | Msa0055940:CDS | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | chr1_2:11375168-11375187 | None:intergenic | 40.0% | |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | chr1_2:11375169-11375188 | Msa0055940:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | chr1_2:11375249-11375268 | None:intergenic | 40.0% |
| CCATCCAAATTACCATCTTC+CGG | + | chr1_2:11375277-11375296 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | chr1_2:11375301-11375320 | Msa0055940:CDS | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr1_2:11375575-11375594 | Msa0055940:CDS | 40.0% |
| GCAGGACAGTATAAATTTGG+TGG | - | chr1_2:11375697-11375716 | Msa0055940:CDS | 40.0% | |
| ! | AAATTTGGTGGAAGAAGTGG+AGG | - | chr1_2:11375709-11375728 | Msa0055940:CDS | 40.0% |
| ! | AATTTGGTGGAAGAAGTGGA+GGG | - | chr1_2:11375710-11375729 | Msa0055940:CDS | 40.0% |
| AACACACCTAAAATCCCAAC+TGG | + | chr1_2:11375817-11375836 | None:intergenic | 40.0% | |
| !!! | GGTGTGTTACTTTTGTTTGC+TGG | - | chr1_2:11375829-11375848 | Msa0055940:intron | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr1_2:11375942-11375961 | Msa0055940:intron | 40.0% |
| TGGTTCCATATGGTAGAAAG+TGG | + | chr1_2:11376021-11376040 | None:intergenic | 40.0% | |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | chr1_2:11376031-11376050 | None:intergenic | 40.0% |
| GAAGTGATTTCATGAGCTTC+TGG | + | chr1_2:11374536-11374555 | None:intergenic | 40.0% | |
| ! | GTTTGAAACTTGTGGCTGAA+TGG | + | chr1_2:11374574-11374593 | None:intergenic | 40.0% |
| !! | GCTGAAATTAATGGTGCCAT+GGG | - | chr1_2:11374647-11374666 | Msa0055940:CDS | 40.0% |
| ATATGTACCAAGATCACCCA+TGG | + | chr1_2:11374666-11374685 | None:intergenic | 40.0% | |
| ! | TGAAAATCAATGTGGTGCCA+AGG | + | chr1_2:11374730-11374749 | None:intergenic | 40.0% |
| !!! | GGCACCACATTGATTTTCAA+CGG | - | chr1_2:11374731-11374750 | Msa0055940:CDS | 40.0% |
| ATTCATGTCCGGAATCTTTC+AGG | - | chr1_2:11374839-11374858 | Msa0055940:CDS | 40.0% | |
| TGTAGACACCTGAAAGATTC+CGG | + | chr1_2:11374850-11374869 | None:intergenic | 40.0% | |
| GCCGAAATCTTTGTCTGATA+AGG | + | chr1_2:11374942-11374961 | None:intergenic | 40.0% | |
| ATTCCAGCTGTCATTATCTC+TGG | + | chr1_2:11374968-11374987 | None:intergenic | 40.0% | |
| ATTCCCCTCACAACAGATAA+AGG | + | chr1_2:11375058-11375077 | None:intergenic | 40.0% | |
| AATCTTTAGGCCAAAGACCT+TGG | - | chr1_2:11375155-11375174 | Msa0055940:CDS | 40.0% | |
| CTAAACCAAACCAAGGTCTT+TGG | + | chr1_2:11375168-11375187 | None:intergenic | 40.0% | |
| !! | AGACCTTGGTTTGGTTTAGA+TGG | - | chr1_2:11375169-11375188 | Msa0055940:CDS | 40.0% |
| !! | CGCAACAACCACTATTTTTC+TGG | + | chr1_2:11375249-11375268 | None:intergenic | 40.0% |
| CCATCCAAATTACCATCTTC+CGG | + | chr1_2:11375277-11375296 | None:intergenic | 40.0% | |
| ATTCAAAGGAGTGATGAAGG+TGG | - | chr1_2:11375301-11375320 | Msa0055940:CDS | 40.0% | |
| ! | CAACAGATCTTTTCCCTGAA+AGG | - | chr1_2:11375575-11375594 | Msa0055940:CDS | 40.0% |
| GCAGGACAGTATAAATTTGG+TGG | - | chr1_2:11375697-11375716 | Msa0055940:CDS | 40.0% | |
| ! | AAATTTGGTGGAAGAAGTGG+AGG | - | chr1_2:11375709-11375728 | Msa0055940:CDS | 40.0% |
| ! | AATTTGGTGGAAGAAGTGGA+GGG | - | chr1_2:11375710-11375729 | Msa0055940:CDS | 40.0% |
| AACACACCTAAAATCCCAAC+TGG | + | chr1_2:11375817-11375836 | None:intergenic | 40.0% | |
| !!! | GGTGTGTTACTTTTGTTTGC+TGG | - | chr1_2:11375829-11375848 | Msa0055940:intron | 40.0% |
| !! | AAGTGCTGCTCTTGGATTTT+TGG | - | chr1_2:11375942-11375961 | Msa0055940:intron | 40.0% |
| TGGTTCCATATGGTAGAAAG+TGG | + | chr1_2:11376021-11376040 | None:intergenic | 40.0% | |
| !!! | TGGACTTTTCTGGTTCCATA+TGG | + | chr1_2:11376031-11376050 | None:intergenic | 40.0% |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | chr1_2:11374566-11374585 | None:intergenic | 45.0% |
| AGTGTCTGCACTGCATCTTT+GGG | + | chr1_2:11374596-11374615 | None:intergenic | 45.0% | |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | chr1_2:11374646-11374665 | Msa0055940:CDS | 45.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | chr1_2:11374692-11374711 | None:intergenic | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | chr1_2:11374860-11374879 | Msa0055940:CDS | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | chr1_2:11374908-11374927 | None:intergenic | 45.0% |
| ATCTTTGTCTGATAAGGCCG+CGG | + | chr1_2:11374936-11374955 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+CGG | - | chr1_2:11374974-11374993 | Msa0055940:CDS | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | chr1_2:11375004-11375023 | Msa0055940:CDS | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | chr1_2:11375018-11375037 | Msa0055940:CDS | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | chr1_2:11375070-11375089 | Msa0055940:CDS | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | chr1_2:11375160-11375179 | Msa0055940:CDS | 45.0% | |
| TGCTCCGGAAGATGGTAATT+TGG | - | chr1_2:11375270-11375289 | Msa0055940:CDS | 45.0% | |
| CCGGAAGATGGTAATTTGGA+TGG | - | chr1_2:11375274-11375293 | Msa0055940:CDS | 45.0% | |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | chr1_2:11375916-11375935 | Msa0055940:intron | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr1_2:11375946-11375965 | Msa0055940:CDS | 45.0% |
| ! | TTGTCATGTGAGGACTTGCT+AGG | - | chr1_2:11376164-11376183 | Msa0055940:CDS | 45.0% |
| !! | TGTCATGTGAGGACTTGCTA+GGG | - | chr1_2:11376165-11376184 | Msa0055940:CDS | 45.0% |
| CTTGCTAGGGTTCTACTTCT+AGG | - | chr1_2:11376178-11376197 | Msa0055940:CDS | 45.0% | |
| ! | CTTGTGGCTGAATGGTTTGT+TGG | + | chr1_2:11374566-11374585 | None:intergenic | 45.0% |
| AGTGTCTGCACTGCATCTTT+GGG | + | chr1_2:11374596-11374615 | None:intergenic | 45.0% | |
| ! | GGCTGAAATTAATGGTGCCA+TGG | - | chr1_2:11374646-11374665 | Msa0055940:CDS | 45.0% |
| AGAGTGAGAGCCAAGACTAT+AGG | + | chr1_2:11374692-11374711 | None:intergenic | 45.0% | |
| GGTGTCTACAACATCATCAC+TGG | - | chr1_2:11374860-11374879 | Msa0055940:CDS | 45.0% | |
| ! | ATTGACTTCATGGGCTGAAC+AGG | + | chr1_2:11374908-11374927 | None:intergenic | 45.0% |
| ATCTTTGTCTGATAAGGCCG+CGG | + | chr1_2:11374936-11374955 | None:intergenic | 45.0% | |
| ATGACAGCTGGAATCTTGAC+CGG | - | chr1_2:11374974-11374993 | Msa0055940:CDS | 45.0% | |
| CTCTTTGTTCTCGGTATCAC+AGG | - | chr1_2:11375004-11375023 | Msa0055940:CDS | 45.0% | |
| TATCACAGGATTGATGCAGC+TGG | - | chr1_2:11375018-11375037 | Msa0055940:CDS | 45.0% | |
| AGGGGAATTCAACTAGCACA+AGG | - | chr1_2:11375070-11375089 | Msa0055940:CDS | 45.0% | |
| TTAGGCCAAAGACCTTGGTT+TGG | - | chr1_2:11375160-11375179 | Msa0055940:CDS | 45.0% | |
| TGCTCCGGAAGATGGTAATT+TGG | - | chr1_2:11375270-11375289 | Msa0055940:CDS | 45.0% | |
| CCGGAAGATGGTAATTTGGA+TGG | - | chr1_2:11375274-11375293 | Msa0055940:CDS | 45.0% | |
| !! | TGCACTGCTGTTTCATTGGT+TGG | - | chr1_2:11375916-11375935 | Msa0055940:intron | 45.0% |
| !!! | GCTGCTCTTGGATTTTTGGT+TGG | - | chr1_2:11375946-11375965 | Msa0055940:CDS | 45.0% |
| ! | TTGTCATGTGAGGACTTGCT+AGG | - | chr1_2:11376164-11376183 | Msa0055940:CDS | 45.0% |
| !! | TGTCATGTGAGGACTTGCTA+GGG | - | chr1_2:11376165-11376184 | Msa0055940:CDS | 45.0% |
| CTTGCTAGGGTTCTACTTCT+AGG | - | chr1_2:11376178-11376197 | Msa0055940:CDS | 45.0% | |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | chr1_2:11374563-11374582 | None:intergenic | 50.0% |
| CAGTGTCTGCACTGCATCTT+TGG | + | chr1_2:11374597-11374616 | None:intergenic | 50.0% | |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | chr1_2:11374656-11374675 | Msa0055940:CDS | 50.0% |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | chr1_2:11374697-11374716 | Msa0055940:CDS | 50.0% |
| CTAGCTAAGGACCTCAACCT+TGG | - | chr1_2:11374710-11374729 | Msa0055940:CDS | 50.0% | |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | chr1_2:11374724-11374743 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | chr1_2:11374902-11374921 | None:intergenic | 50.0% |
| GTGCCAGAGATAATGACAGC+TGG | - | chr1_2:11374962-11374981 | Msa0055940:CDS | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | chr1_2:11375238-11375257 | Msa0055940:CDS | 50.0% | |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr1_2:11375934-11375953 | Msa0055940:intron | 50.0% |
| !! | GTGGCTGAATGGTTTGTTGG+AGG | + | chr1_2:11374563-11374582 | None:intergenic | 50.0% |
| CAGTGTCTGCACTGCATCTT+TGG | + | chr1_2:11374597-11374616 | None:intergenic | 50.0% | |
| !! | AATGGTGCCATGGGTGATCT+TGG | - | chr1_2:11374656-11374675 | Msa0055940:CDS | 50.0% |
| ! | CTTGGCTCTCACTCTAGCTA+AGG | - | chr1_2:11374697-11374716 | Msa0055940:CDS | 50.0% |
| CTAGCTAAGGACCTCAACCT+TGG | - | chr1_2:11374710-11374729 | Msa0055940:CDS | 50.0% | |
| ! | TCAATGTGGTGCCAAGGTTG+AGG | + | chr1_2:11374724-11374743 | None:intergenic | 50.0% |
| ! | TTCATGGGCTGAACAGGCAT+AGG | + | chr1_2:11374902-11374921 | None:intergenic | 50.0% |
| GTGCCAGAGATAATGACAGC+TGG | - | chr1_2:11374962-11374981 | Msa0055940:CDS | 50.0% | |
| GGAGCTGGCCAGAAAAATAG+TGG | - | chr1_2:11375238-11375257 | Msa0055940:CDS | 50.0% | |
| ! | GTTGGATCAAGTGCTGCTCT+TGG | - | chr1_2:11375934-11375953 | Msa0055940:intron | 50.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | chr1_2:11374917-11374936 | None:intergenic | 55.0% |
| CATGAAGTCAATCGCTGCCG+CGG | - | chr1_2:11374916-11374935 | Msa0055940:CDS | 55.0% | |
| ACAGCTGGAATCTTGACCGG+TGG | - | chr1_2:11374977-11374996 | Msa0055940:CDS | 55.0% | |
| ! | GAGAACAAAGAGCACGCCAC+CGG | + | chr1_2:11374996-11375015 | None:intergenic | 55.0% |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | chr1_2:11374995-11375014 | Msa0055940:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | chr1_2:11375255-11375274 | Msa0055940:CDS | 55.0% | |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | chr1_2:11375661-11375680 | Msa0055940:CDS | 55.0% |
| GTGCCAACTTGTCATGGTGC+TGG | - | chr1_2:11375667-11375686 | Msa0055940:CDS | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | chr1_2:11375673-11375692 | None:intergenic | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | chr1_2:11375670-11375689 | Msa0055940:CDS | 55.0% |
| ! | TGGAAGAAGTGGAGGGTGTG+TGG | - | chr1_2:11375717-11375736 | Msa0055940:CDS | 55.0% |
| ! | GCGGCAGCGATTGACTTCAT+GGG | + | chr1_2:11374917-11374936 | None:intergenic | 55.0% |
| CATGAAGTCAATCGCTGCCG+CGG | - | chr1_2:11374916-11374935 | Msa0055940:CDS | 55.0% | |
| ACAGCTGGAATCTTGACCGG+TGG | - | chr1_2:11374977-11374996 | Msa0055940:CDS | 55.0% | |
| ! | GAGAACAAAGAGCACGCCAC+CGG | + | chr1_2:11374996-11375015 | None:intergenic | 55.0% |
| GGTGGCGTGCTCTTTGTTCT+CGG | - | chr1_2:11374995-11375014 | Msa0055940:CDS | 55.0% | |
| TAGTGGTTGTTGCGGTGCTC+CGG | - | chr1_2:11375255-11375274 | Msa0055940:CDS | 55.0% | |
| ! | GGTGCTGTGCCAACTTGTCA+TGG | - | chr1_2:11375661-11375680 | Msa0055940:CDS | 55.0% |
| GTGCCAACTTGTCATGGTGC+TGG | - | chr1_2:11375667-11375686 | Msa0055940:CDS | 55.0% | |
| CCACCAGCACCATGACAAGT+TGG | + | chr1_2:11375673-11375692 | None:intergenic | 55.0% | |
| ! | CCAACTTGTCATGGTGCTGG+TGG | - | chr1_2:11375670-11375689 | Msa0055940:CDS | 55.0% |
| ! | TGGAAGAAGTGGAGGGTGTG+TGG | - | chr1_2:11375717-11375736 | Msa0055940:CDS | 55.0% |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | chr1_2:11374918-11374937 | None:intergenic | 60.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | chr1_2:11375262-11375281 | Msa0055940:CDS | 60.0% | |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | chr1_2:11375679-11375698 | Msa0055940:CDS | 60.0% |
| ! | GGAGGGTGTGTGGCACTTCT+TGG | - | chr1_2:11375727-11375746 | Msa0055940:CDS | 60.0% |
| ! | CGCGGCAGCGATTGACTTCA+TGG | + | chr1_2:11374918-11374937 | None:intergenic | 60.0% |
| TGTTGCGGTGCTCCGGAAGA+TGG | - | chr1_2:11375262-11375281 | Msa0055940:CDS | 60.0% | |
| !! | CATGGTGCTGGTGGACTAGC+AGG | - | chr1_2:11375679-11375698 | Msa0055940:CDS | 60.0% |
| ! | GGAGGGTGTGTGGCACTTCT+TGG | - | chr1_2:11375727-11375746 | Msa0055940:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 11374374 | 11376321 | 11374374 | ID=Msa0055940;Name=Msa0055940 |
| chr1_2 | mRNA | 11374374 | 11376321 | 11374374 | ID=Msa0055940-mRNA-1;Parent=Msa0055940;Name=Msa0055940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=120|1|1|1|1|1|2|265|484 |
| chr1_2 | exon | 11374374 | 11375834 | 11374374 | ID=Msa0055940-mRNA-1:exon:4321;Parent=Msa0055940-mRNA-1 |
| chr1_2 | exon | 11375943 | 11376321 | 11375943 | ID=Msa0055940-mRNA-1:exon:4320;Parent=Msa0055940-mRNA-1 |
| chr1_2 | five_prime_UTR | 11376202 | 11376321 | 11376202 | ID=Msa0055940-mRNA-1:five_prime_utr;Parent=Msa0055940-mRNA-1 |
| chr1_2 | CDS | 11375943 | 11376201 | 11375943 | ID=Msa0055940-mRNA-1:cds;Parent=Msa0055940-mRNA-1 |
| chr1_2 | CDS | 11374639 | 11375834 | 11374639 | ID=Msa0055940-mRNA-1:cds;Parent=Msa0055940-mRNA-1 |
| chr1_2 | three_prime_UTR | 11374374 | 11374638 | 11374374 | ID=Msa0055940-mRNA-1:three_prime_utr;Parent=Msa0055940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
