AlfalfaGEDB | Msa1459840

M. sativa cultivar zhongmu-4 / Msa1459840

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575
PFAM: PF13639.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459840	XP_003609919.1	96.450	169	6	0	1	169	1	169	1.74e-110	322

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459840	sp\|Q9XF92\|BRH1_ARATH	29.252	147	83	5	1	132	1	141	1.84e-15	73.2

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459840	G7JR49	96.450	169	6	0	1	169	1	169	8.30e-111	322

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004180	Msa1459840	-0.816091	6.612638e-52	-8.615850e-47
Msa0013270	Msa1459840	0.822499	2.292129e-53	-8.615850e-47
Msa0017300	Msa1459840	-0.824325	8.581809e-54	-8.615850e-47
Msa0027020	Msa1459840	-0.806413	8.327532e-50	-8.615850e-47
Msa0027030	Msa1459840	-0.805085	1.582385e-49	-8.615850e-47
Msa0047560	Msa1459840	-0.817425	3.319112e-52	-8.615850e-47
Msa0065520	Msa1459840	-0.814240	1.703711e-51	-8.615850e-47
Msa0072180	Msa1459840	0.814248	1.696698e-51	-8.615850e-47
Msa0073110	Msa1459840	0.801867	7.350816e-49	-8.615850e-47
Msa0077570	Msa1459840	-0.841723	3.996826e-58	-8.615850e-47
Msa0078170	Msa1459840	-0.804981	1.663572e-49	-8.615850e-47
Msa0085690	Msa1459840	-0.817976	2.493824e-52	-8.615850e-47
Msa0093360	Msa1459840	-0.801061	1.075331e-48	-8.615850e-47
Msa0095890	Msa1459840	-0.846713	1.827071e-59	-8.615850e-47
Msa0106540	Msa1459840	0.800021	1.752069e-48	-8.615850e-47
Msa0120100	Msa1459840	-0.825266	5.148651e-54	-8.615850e-47
Msa0120160	Msa1459840	-0.829039	6.432906e-55	-8.615850e-47
Msa0120450	Msa1459840	0.804927	1.707770e-49	-8.615850e-47
Msa1348170	Msa1459840	-0.808187	3.502727e-50	-8.615850e-47
Msa1350580	Msa1459840	-0.816684	4.870756e-52	-8.615850e-47
Msa1375650	Msa1459840	-0.800513	1.391143e-48	-8.615850e-47
Msa1379270	Msa1459840	-0.823440	1.383782e-53	-8.615850e-47
Msa1384970	Msa1459840	-0.808114	3.630494e-50	-8.615850e-47
Msa1388720	Msa1459840	-0.818947	1.501976e-52	-8.615850e-47
Msa1405830	Msa1459840	0.800148	1.651343e-48	-8.615850e-47
Msa1407810	Msa1459840	0.836231	1.056643e-56	-8.615850e-47
Msa1408230	Msa1459840	-0.803722	3.043125e-49	-8.615850e-47
Msa1408860	Msa1459840	-0.802755	4.825666e-49	-8.615850e-47
Msa1412330	Msa1459840	-0.847236	1.314135e-59	-8.615850e-47
Msa1415510	Msa1459840	-0.800007	1.763632e-48	-8.615850e-47
Msa1418210	Msa1459840	-0.811541	6.648553e-51	-8.615850e-47
Msa1432730	Msa1459840	-0.810421	1.162687e-50	-8.615850e-47
Msa1433360	Msa1459840	0.823284	1.504847e-53	-8.615850e-47
Msa1437780	Msa1459840	0.838397	2.946924e-57	-8.615850e-47
Msa1441450	Msa1459840	0.807777	4.283162e-50	-8.615850e-47
Msa1445530	Msa1459840	0.822965	1.786149e-53	-8.615850e-47
Msa1459840	Msa1462610	0.806784	6.951642e-50	-8.615850e-47
Msa0603180	Msa1459840	-0.805763	1.140989e-49	-8.615850e-47
Msa0610700	Msa1459840	-0.820025	8.528999e-53	-8.615850e-47
Msa0616890	Msa1459840	-0.806641	7.454519e-50	-8.615850e-47
Msa0638300	Msa1459840	-0.818274	2.135542e-52	-8.615850e-47
Msa0646030	Msa1459840	-0.800923	1.147768e-48	-8.615850e-47
Msa0654490	Msa1459840	-0.801278	9.710204e-49	-8.615850e-47
Msa0657710	Msa1459840	0.806406	8.356164e-50	-8.615850e-47
Msa0657720	Msa1459840	0.801291	9.651221e-49	-8.615850e-47
Msa0660650	Msa1459840	0.807085	6.003154e-50	-8.615850e-47
Msa0673620	Msa1459840	-0.809511	1.825129e-50	-8.615850e-47
Msa0680460	Msa1459840	0.803170	3.961913e-49	-8.615850e-47
Msa0684030	Msa1459840	-0.819968	8.787504e-53	-8.615850e-47
Msa0702790	Msa1459840	0.802890	4.526012e-49	-8.615850e-47
Msa0702800	Msa1459840	0.801637	8.198362e-49	-8.615850e-47
Msa0713570	Msa1459840	-0.810325	1.219482e-50	-8.615850e-47
Msa0738460	Msa1459840	-0.803269	3.778260e-49	-8.615850e-47
Msa0753590	Msa1459840	-0.823870	1.097278e-53	-8.615850e-47
Msa0754020	Msa1459840	-0.806081	9.782369e-50	-8.615850e-47
Msa0755550	Msa1459840	-0.813244	2.823441e-51	-8.615850e-47
Msa0758880	Msa1459840	-0.815058	1.123072e-51	-8.615850e-47
Msa0769910	Msa1459840	-0.823322	1.474100e-53	-8.615850e-47
Msa0784780	Msa1459840	-0.801554	8.522758e-49	-8.615850e-47
Msa0790650	Msa1459840	-0.814021	1.904442e-51	-8.615850e-47
Msa0792410	Msa1459840	0.808997	2.351866e-50	-8.615850e-47
Msa0794900	Msa1459840	-0.806471	8.096530e-50	-8.615850e-47
Msa0795910	Msa1459840	-0.819969	8.782725e-53	-8.615850e-47
Msa0797180	Msa1459840	-0.800938	1.139637e-48	-8.615850e-47
Msa0801920	Msa1459840	-0.818075	2.367971e-52	-8.615850e-47
Msa0807100	Msa1459840	-0.803370	3.601230e-49	-8.615850e-47
Msa0821530	Msa1459840	0.802011	6.868707e-49	-8.615850e-47
Msa0828960	Msa1459840	0.802549	5.322958e-49	-8.615850e-47
Msa0829250	Msa1459840	-0.800056	1.723554e-48	-8.615850e-47
Msa0833030	Msa1459840	-0.810093	1.367820e-50	-8.615850e-47
Msa0833200	Msa1459840	-0.849339	3.445560e-60	-8.615850e-47
Msa0833360	Msa1459840	-0.818924	1.520250e-52	-8.615850e-47
Msa0835050	Msa1459840	-0.809092	2.245095e-50	-8.615850e-47
Msa0838120	Msa1459840	-0.817980	2.488927e-52	-8.615850e-47
Msa0122930	Msa1459840	-0.813484	2.500661e-51	-8.615850e-47
Msa0132000	Msa1459840	0.808002	3.835559e-50	-8.615850e-47
Msa0151510	Msa1459840	-0.810029	1.412463e-50	-8.615850e-47
Msa0167570	Msa1459840	-0.815688	8.131666e-52	-8.615850e-47
Msa0177320	Msa1459840	0.813133	2.986099e-51	-8.615850e-47
Msa0206370	Msa1459840	0.819683	1.021128e-52	-8.615850e-47
Msa0207250	Msa1459840	-0.808660	2.777437e-50	-8.615850e-47
Msa0212950	Msa1459840	-0.828968	6.691216e-55	-8.615850e-47
Msa0224870	Msa1459840	0.800721	1.261638e-48	-8.615850e-47
Msa0229350	Msa1459840	-0.804244	2.371235e-49	-8.615850e-47
Msa1242160	Msa1459840	0.801418	9.087859e-49	-8.615850e-47
Msa1242490	Msa1459840	0.819262	1.274080e-52	-8.615850e-47
Msa1256490	Msa1459840	-0.807430	5.073550e-50	-8.615850e-47
Msa1266120	Msa1459840	-0.820257	7.547932e-53	-8.615850e-47
Msa1273320	Msa1459840	0.844024	9.764786e-59	-8.615850e-47
Msa1281780	Msa1459840	0.842485	2.513278e-58	-8.615850e-47
Msa1283930	Msa1459840	0.822741	2.013673e-53	-8.615850e-47
Msa1287100	Msa1459840	-0.844806	6.016342e-59	-8.615850e-47
Msa1288070	Msa1459840	0.809477	1.856070e-50	-8.615850e-47
Msa1291070	Msa1459840	-0.822604	2.166993e-53	-8.615850e-47
Msa1295210	Msa1459840	-0.810365	1.195528e-50	-8.615850e-47
Msa1296810	Msa1459840	-0.804967	1.675288e-49	-8.615850e-47
Msa1298480	Msa1459840	-0.805810	1.115208e-49	-8.615850e-47
Msa1322960	Msa1459840	0.817748	2.807813e-52	-8.615850e-47
Msa1341710	Msa1459840	-0.802867	4.576478e-49	-8.615850e-47
Msa1342110	Msa1459840	-0.800869	1.177376e-48	-8.615850e-47
Msa1342360	Msa1459840	-0.826291	2.941218e-54	-8.615850e-47
Msa0375320	Msa1459840	-0.802350	5.850168e-49	-8.615850e-47
Msa0375570	Msa1459840	-0.813925	1.999810e-51	-8.615850e-47
Msa0382020	Msa1459840	-0.810751	9.866369e-51	-8.615850e-47
Msa0382050	Msa1459840	-0.804889	1.739450e-49	-8.615850e-47
Msa0386880	Msa1459840	0.836858	7.314763e-57	-8.615850e-47
Msa0403740	Msa1459840	-0.828550	8.445614e-55	-8.615850e-47
Msa0412580	Msa1459840	-0.807159	5.791020e-50	-8.615850e-47
Msa0417790	Msa1459840	-0.836164	1.098552e-56	-8.615850e-47
Msa0424220	Msa1459840	-0.813305	2.737745e-51	-8.615850e-47
Msa0427560	Msa1459840	0.810324	1.219627e-50	-8.615850e-47
Msa0428270	Msa1459840	-0.803443	3.477883e-49	-8.615850e-47
Msa0431270	Msa1459840	-0.814354	1.608239e-51	-8.615850e-47
Msa0434090	Msa1459840	0.805801	1.120325e-49	-8.615850e-47
Msa0456450	Msa1459840	-0.826185	3.116844e-54	-8.615850e-47
Msa0469770	Msa1459840	-0.803994	2.672134e-49	-8.615850e-47
Msa0471130	Msa1459840	-0.828149	1.055475e-54	-8.615850e-47
Msa0474660	Msa1459840	-0.818269	2.140407e-52	-8.615850e-47
Msa0476600	Msa1459840	-0.819695	1.014547e-52	-8.615850e-47
Msa0477900	Msa1459840	0.803346	3.642569e-49	-8.615850e-47
Msa0481670	Msa1459840	0.801010	1.101688e-48	-8.615850e-47
Msa1002550	Msa1459840	-0.804728	1.879693e-49	-8.615850e-47
Msa1028890	Msa1459840	-0.800653	1.302774e-48	-8.615850e-47
Msa1036260	Msa1459840	-0.804481	2.116193e-49	-8.615850e-47
Msa1058550	Msa1459840	-0.805492	1.300554e-49	-8.615850e-47
Msa1068010	Msa1459840	-0.801193	1.010408e-48	-8.615850e-47
Msa1078120	Msa1459840	-0.801146	1.033270e-48	-8.615850e-47
Msa1106730	Msa1459840	-0.817658	2.941120e-52	-8.615850e-47
Msa0241750	Msa1459840	0.817369	3.417479e-52	-8.615850e-47
Msa0253230	Msa1459840	-0.832782	7.766180e-56	-8.615850e-47
Msa0259450	Msa1459840	-0.802432	5.627357e-49	-8.615850e-47
Msa0259570	Msa1459840	-0.807691	4.466553e-50	-8.615850e-47
Msa0261350	Msa1459840	-0.811482	6.848402e-51	-8.615850e-47
Msa0264230	Msa1459840	0.834267	3.308999e-56	-8.615850e-47
Msa0266140	Msa1459840	-0.812661	3.789503e-51	-8.615850e-47
Msa0267450	Msa1459840	-0.819694	1.015363e-52	-8.615850e-47
Msa0267510	Msa1459840	-0.819520	1.112480e-52	-8.615850e-47
Msa0275980	Msa1459840	-0.800172	1.632840e-48	-8.615850e-47
Msa0279810	Msa1459840	0.849771	2.610377e-60	-8.615850e-47
Msa0287480	Msa1459840	0.804877	1.748951e-49	-8.615850e-47
Msa0299130	Msa1459840	-0.816297	5.946736e-52	-8.615850e-47
Msa0302200	Msa1459840	0.841356	4.995209e-58	-8.615850e-47
Msa0305630	Msa1459840	-0.807253	5.532972e-50	-8.615850e-47
Msa0307630	Msa1459840	0.808455	3.071973e-50	-8.615850e-47
Msa0319220	Msa1459840	0.847893	8.666894e-60	-8.615850e-47
Msa0331070	Msa1459840	-0.802163	6.390527e-49	-8.615850e-47
Msa0336460	Msa1459840	0.805781	1.131220e-49	-8.615850e-47
Msa0339530	Msa1459840	0.823008	1.744933e-53	-8.615850e-47
Msa0340700	Msa1459840	-0.807724	4.395575e-50	-8.615850e-47
Msa0364030	Msa1459840	-0.829275	5.638797e-55	-8.615850e-47
Msa1111910	Msa1459840	0.838428	2.892332e-57	-8.615850e-47
Msa1122710	Msa1459840	-0.820683	6.025337e-53	-8.615850e-47
Msa1129120	Msa1459840	-0.817715	2.855641e-52	-8.615850e-47
Msa1130150	Msa1459840	-0.811906	5.536872e-51	-8.615850e-47
Msa1132880	Msa1459840	-0.822107	2.827093e-53	-8.615850e-47
Msa1149910	Msa1459840	0.811924	5.488150e-51	-8.615850e-47
Msa1154060	Msa1459840	0.817375	3.407136e-52	-8.615850e-47
Msa1154320	Msa1459840	0.812342	4.448668e-51	-8.615850e-47
Msa1156100	Msa1459840	-0.810066	1.386758e-50	-8.615850e-47
Msa1156430	Msa1459840	-0.812934	3.302312e-51	-8.615850e-47
Msa1191530	Msa1459840	-0.821746	3.427184e-53	-8.615850e-47
Msa1203650	Msa1459840	0.810933	9.007598e-51	-8.615850e-47
Msa1204870	Msa1459840	-0.817676	2.914312e-52	-8.615850e-47
Msa1204900	Msa1459840	-0.809114	2.220132e-50	-8.615850e-47
Msa1209990	Msa1459840	-0.803924	2.763878e-49	-8.615850e-47
Msa0485260	Msa1459840	-0.817155	3.819019e-52	-8.615850e-47
Msa0490740	Msa1459840	-0.812467	4.178230e-51	-8.615850e-47
Msa0492330	Msa1459840	-0.804089	2.553658e-49	-8.615850e-47
Msa0500580	Msa1459840	-0.800974	1.120608e-48	-8.615850e-47
Msa0506700	Msa1459840	-0.809374	1.953252e-50	-8.615850e-47
Msa0519070	Msa1459840	-0.802534	5.361402e-49	-8.615850e-47
Msa0520550	Msa1459840	-0.804574	2.023737e-49	-8.615850e-47
Msa0524830	Msa1459840	-0.811432	7.023153e-51	-8.615850e-47
Msa0525180	Msa1459840	-0.800165	1.637822e-48	-8.615850e-47
Msa0548260	Msa1459840	-0.809772	1.604249e-50	-8.615850e-47
Msa0565370	Msa1459840	-0.803058	4.178745e-49	-8.615850e-47
Msa0565430	Msa1459840	-0.805865	1.086042e-49	-8.615850e-47
Msa0566090	Msa1459840	-0.804425	2.173703e-49	-8.615850e-47
Msa0567330	Msa1459840	0.833113	6.424777e-56	-8.615850e-47
Msa0567570	Msa1459840	0.827740	1.323581e-54	-8.615850e-47
Msa0576320	Msa1459840	0.825319	5.002859e-54	-8.615850e-47
Msa0579070	Msa1459840	-0.807291	5.431901e-50	-8.615850e-47
Msa0580410	Msa1459840	-0.819452	1.152859e-52	-8.615850e-47
Msa0580890	Msa1459840	-0.803423	3.511424e-49	-8.615850e-47
Msa0582270	Msa1459840	-0.823978	1.035151e-53	-8.615850e-47
Msa0853200	Msa1459840	-0.820041	8.455729e-53	-8.615850e-47
Msa0858250	Msa1459840	-0.809117	2.216924e-50	-8.615850e-47
Msa0873910	Msa1459840	0.800395	1.470875e-48	-8.615850e-47
Msa0882480	Msa1459840	-0.800094	1.693337e-48	-8.615850e-47
Msa0882780	Msa1459840	0.805203	1.494820e-49	-8.615850e-47
Msa0903590	Msa1459840	-0.831281	1.824492e-55	-8.615850e-47
Msa0906660	Msa1459840	0.817241	3.651339e-52	-8.615850e-47
Msa0909260	Msa1459840	0.810010	1.425717e-50	-8.615850e-47
Msa0935840	Msa1459840	-0.807678	4.494153e-50	-8.615850e-47
Msa0941150	Msa1459840	-0.805054	1.606479e-49	-8.615850e-47
Msa0964400	Msa1459840	-0.829839	4.112608e-55	-8.615850e-47
Msa0968060	Msa1459840	-0.806627	7.503965e-50	-8.615850e-47
Msa0973080	Msa1459840	-0.812187	4.808852e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459840	MtrunA17_Chr4g0069751	96.450	169	6	0	1	169	1	169	1.60e-114	322
Msa1459840	MtrunA17_Chr4g0069761	83.784	111	9	1	59	169	1	102	7.01e-63	189
Msa1459840	MtrunA17_Chr5g0397351	39.024	82	44	1	58	139	60	135	3.79e-16	70.9
Msa1459840	MtrunA17_Chr7g0248101	38.667	75	40	1	58	132	69	137	1.66e-15	70.5
Msa1459840	MtrunA17_Chr8g0387291	37.931	87	44	2	46	132	57	133	3.05e-15	69.3
Msa1459840	MtrunA17_Chr8g0348551	40.260	77	34	3	58	132	73	139	7.16e-13	63.2
Msa1459840	MtrunA17_Chr8g0336881	43.373	83	39	2	55	136	80	155	1.11e-12	64.7
Msa1459840	MtrunA17_Chr2g0301871	44.872	78	35	2	60	136	63	133	1.13e-12	64.3
Msa1459840	MtrunA17_Chr3g0120681	41.667	72	36	1	61	132	81	146	1.40e-12	62.0
Msa1459840	MtrunA17_Chr4g0073141	43.284	67	27	2	79	145	144	199	1.38e-11	61.6
Msa1459840	MtrunA17_Chr2g0295571	44.444	72	31	3	60	131	102	164	8.14e-11	58.9
Msa1459840	MtrunA17_Chr3g0132491	50.000	54	20	2	79	132	136	182	8.92e-11	59.3
Msa1459840	MtrunA17_Chr5g0426881	46.296	54	22	1	79	132	143	189	9.84e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1459840	AT3G43430.1	41.808	177	84	6	1	168	1	167	3.52e-41	136
Msa1459840	AT5G20885.1	42.935	184	77	8	1	166	1	174	5.28e-40	133
Msa1459840	AT3G61460.1	29.252	147	83	5	1	132	1	141	1.87e-16	73.2
Msa1459840	AT1G63840.1	31.757	148	74	7	1	132	1	137	1.97e-15	70.1
Msa1459840	AT4G00305.1	41.026	78	39	2	58	135	51	121	3.19e-15	68.6
Msa1459840	AT5G41400.1	39.241	79	40	3	58	134	83	155	9.61e-15	68.6
Msa1459840	AT3G60220.1	42.105	95	44	3	43	136	83	167	6.54e-14	68.6
Msa1459840	AT2G01150.1	53.704	54	18	2	79	132	74	120	2.04e-12	62.0
Msa1459840	AT2G01150.3	53.704	54	18	2	79	132	100	146	2.27e-12	62.4
Msa1459840	AT2G01150.2	53.704	54	18	2	79	132	123	169	3.93e-12	62.0

Find 23 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCACATGTTTCTTCTGTTTC+TGG	0.111435	tig0040489:+7838	Msa1459840:intergenic
GGCTTGACTTATTGTTAAAT+TGG	0.164893	tig0040489:+8026	Msa1459840:intergenic
TATTGTTGTTGTTCTTCTTC+TGG	0.235426	tig0040489:+7919	Msa1459840:intergenic
GAGAGACTTCTTTATCTCTT+TGG	0.276051	tig0040489:-7589	Msa1459840:CDS
ATGCTACCTTTGACAAGTTT+CGG	0.327811	tig0040489:-7880	Msa1459840:CDS
TAATCATTGCAGTTCTTAGA+TGG	0.340842	tig0040489:-7987	Msa1459840:CDS
TTCTTCTCCTCAACCTAGTT+GGG	0.344519	tig0040489:-7617	Msa1459840:CDS
GATTAGAGCAGCTTCATATA+TGG	0.344672	tig0040489:+8005	Msa1459840:intergenic
TTGTTTGAACAAGCTGAAAA+TGG	0.363273	tig0040489:-7812	Msa1459840:CDS
TTTCTTCTCCTCAACCTAGT+TGG	0.373720	tig0040489:-7618	Msa1459840:CDS
CTCTACAAAGTGGACAAGTT+TGG	0.375846	tig0040489:+7692	Msa1459840:intergenic
GACAAGTTTCGGAGAAATCA+AGG	0.419612	tig0040489:-7869	Msa1459840:CDS
ACTTATTGTTAAATTGGAGA+TGG	0.483621	tig0040489:+8032	Msa1459840:intergenic
ATAAGGAATGCATAGATAAG+TGG	0.495925	tig0040489:-7747	Msa1459840:CDS
CTGTGATCATGTGTTTCATA+AGG	0.517073	tig0040489:-7764	Msa1459840:CDS
AGTCTCTCAACAGCCCAACT+AGG	0.548383	tig0040489:+7604	Msa1459840:intergenic
TCAACAGCCCAACTAGGTTG+AGG	0.559804	tig0040489:+7610	Msa1459840:intergenic
TCATCTGAGATTTCAAGCTG+TGG	0.568106	tig0040489:-7643	Msa1459840:CDS
TAACTAATTATTAATTAACA+AGG	0.588753	tig0040489:+7553	Msa1459840:intergenic
ATTTCTCCGAAACTTGTCAA+AGG	0.593001	tig0040489:+7874	Msa1459840:intergenic
AGTGAATAAGAATTAATCAA+AGG	0.595804	tig0040489:+7667	Msa1459840:intergenic
ATCAAAGGAGCTCTACAAAG+TGG	0.596806	tig0040489:+7682	Msa1459840:intergenic
ATAGATAAGTGGTTAGAACA+TGG	0.680848	tig0040489:-7736	Msa1459840:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AGTGAATAAGAATTAATCAA+AGG	+	tig0040489:7957-7976	Msa1459840:intergenic	20.0%
!	ACTTATTGTTAAATTGGAGA+TGG	+	tig0040489:7592-7611	Msa0135390:intergenic	25.0%
	GGCTTGACTTATTGTTAAAT+TGG	+	tig0040489:7598-7617	Msa0135390:intergenic	30.0%
	TAATCATTGCAGTTCTTAGA+TGG	-	tig0040489:7634-7653	Msa1459840:CDS	30.0%
!	TATTGTTGTTGTTCTTCTTC+TGG	+	tig0040489:7705-7724	Msa1459840:intergenic	30.0%
	TTGTTTGAACAAGCTGAAAA+TGG	-	tig0040489:7809-7828	Msa1459840:CDS	30.0%
	ATAAGGAATGCATAGATAAG+TGG	-	tig0040489:7874-7893	Msa1459840:CDS	30.0%
	ATAGATAAGTGGTTAGAACA+TGG	-	tig0040489:7885-7904	Msa1459840:CDS	30.0%
	GATTAGAGCAGCTTCATATA+TGG	+	tig0040489:7619-7638	Msa0135390:intergenic	35.0%
	ATGCTACCTTTGACAAGTTT+CGG	-	tig0040489:7741-7760	Msa1459840:CDS	35.0%
	ATTTCTCCGAAACTTGTCAA+AGG	+	tig0040489:7750-7769	Msa1459840:intergenic	35.0%
	CTGTGATCATGTGTTTCATA+AGG	-	tig0040489:7857-7876	Msa1459840:CDS	35.0%
	GAGAGACTTCTTTATCTCTT+TGG	-	tig0040489:8032-8051	Msa1459840:CDS	35.0%
	GACAAGTTTCGGAGAAATCA+AGG	-	tig0040489:7752-7771	Msa1459840:CDS	40.0%
	GCACATGTTTCTTCTGTTTC+TGG	+	tig0040489:7786-7805	Msa1459840:intergenic	40.0%
	CTCTACAAAGTGGACAAGTT+TGG	+	tig0040489:7932-7951	Msa1459840:intergenic	40.0%
	ATCAAAGGAGCTCTACAAAG+TGG	+	tig0040489:7942-7961	Msa1459840:intergenic	40.0%
!	TCATCTGAGATTTCAAGCTG+TGG	-	tig0040489:7978-7997	Msa1459840:CDS	40.0%
	TTTCTTCTCCTCAACCTAGT+TGG	-	tig0040489:8003-8022	Msa1459840:CDS	40.0%
	TTCTTCTCCTCAACCTAGTT+GGG	-	tig0040489:8004-8023	Msa1459840:CDS	40.0%
	TCAACAGCCCAACTAGGTTG+AGG	+	tig0040489:8014-8033	Msa1459840:intergenic	50.0%
	AGTCTCTCAACAGCCCAACT+AGG	+	tig0040489:8020-8039	Msa1459840:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
tig0040489	gene	7567	8076	7567	ID=Msa1459840;Name=Msa1459840
tig0040489	mRNA	7567	8076	7567	ID=Msa1459840-mRNA-1;Parent=Msa1459840;Name=Msa1459840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|169
tig0040489	exon	7567	8076	7567	ID=Msa1459840-mRNA-1:exon:22445;Parent=Msa1459840-mRNA-1
tig0040489	CDS	7567	8076	7567	ID=Msa1459840-mRNA-1:cds;Parent=Msa1459840-mRNA-1

Gene Sequence

>Msa1459840

ATGGGTTTCTACACTCAACAATCCATCTCCAATTTAACAATAAGTCAAGCCATATATGAAGCTGCTCTAATCATTGCAGTTCTTAGATGGATCATATGCTTAGTTTTCAAAATTATCAAACACACAAAAGCAAAACCAGAAGAAGAACAACAACAATACTCTTCTTGTTGTCAAATGCTACCTTTGACAAGTTTCGGAGAAATCAAGGAAAGACATCCAGAAACAGAAGAAACATGTGCTGTTTGTTTGAACAAGCTGAAAATGGAAGATGAAGTTAGAGAATTGATGAACTGTGATCATGTGTTTCATAAGGAATGCATAGATAAGTGGTTAGAACATGGTCATGAAAATGAAAATCATAACCAAACTTGTCCACTTTGTAGAGCTCCTTTGATTAATTCTTATTCACTTTCATCTGAGATTTCAAGCTGTGGATTTTCTTCTCCTCAACCTAGTTGGGCTGTTGAGAGACTTCTTTATCTCTTTGGTGATGATCTCTTGCCTTGTTAA

Protein sequence

>Msa1459840

MGFYTQQSISNLTISQAIYEAALIIAVLRWIICLVFKIIKHTKAKPEEEQQQYSSCCQMLPLTSFGEIKERHPETEETCAVCLNKLKMEDEVRELMNCDHVFHKECIDKWLEHGHENENHNQTCPLCRAPLINSYSLSSEISSCGFSSPQPSWAVERLLYLFGDDLLPC*