Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222280 | XP_013458571.1 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222280 | sp|Q3V384|AFG1L_MOUSE | 40.097 | 414 | 214 | 10 | 85 | 480 | 74 | 471 | 7.37e-83 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa1222280 | 0.875227 | 3.638613e-68 | -8.615850e-47 |
| Msa0029850 | Msa1222280 | 0.812075 | 5.087509e-51 | -8.615850e-47 |
| Msa0038020 | Msa1222280 | 0.851884 | 6.634256e-61 | -8.615850e-47 |
| Msa0052030 | Msa1222280 | 0.817548 | 3.115476e-52 | -8.615850e-47 |
| Msa0058270 | Msa1222280 | 0.820959 | 5.205337e-53 | -8.615850e-47 |
| Msa0076700 | Msa1222280 | 0.800710 | 1.268552e-48 | -8.615850e-47 |
| Msa0077180 | Msa1222280 | 0.811050 | 8.498319e-51 | -8.615850e-47 |
| Msa0085720 | Msa1222280 | 0.878868 | 1.981527e-69 | -8.615850e-47 |
| Msa0615340 | Msa1222280 | 0.802061 | 6.709069e-49 | -8.615850e-47 |
| Msa0622600 | Msa1222280 | 0.976836 | 1.357070e-142 | -8.615850e-47 |
| Msa0624230 | Msa1222280 | 0.840694 | 7.451676e-58 | -8.615850e-47 |
| Msa0626990 | Msa1222280 | 0.812804 | 3.526391e-51 | -8.615850e-47 |
| Msa0627350 | Msa1222280 | 0.814494 | 1.497333e-51 | -8.615850e-47 |
| Msa0679550 | Msa1222280 | 0.817561 | 3.093779e-52 | -8.615850e-47 |
| Msa0724560 | Msa1222280 | 0.806700 | 7.243173e-50 | -8.615850e-47 |
| Msa0724950 | Msa1222280 | 0.820104 | 8.180219e-53 | -8.615850e-47 |
| Msa0743120 | Msa1222280 | -0.807886 | 4.059662e-50 | -8.615850e-47 |
| Msa0763080 | Msa1222280 | 0.822391 | 2.428607e-53 | -8.615850e-47 |
| Msa0773310 | Msa1222280 | 0.821679 | 3.552108e-53 | -8.615850e-47 |
| Msa0795890 | Msa1222280 | -0.810927 | 9.033926e-51 | -8.615850e-47 |
| Msa0810760 | Msa1222280 | 0.833282 | 5.832005e-56 | -8.615850e-47 |
| Msa0818110 | Msa1222280 | 0.849369 | 3.380374e-60 | -8.615850e-47 |
| Msa0827470 | Msa1222280 | 0.834899 | 2.295147e-56 | -8.615850e-47 |
| Msa0833670 | Msa1222280 | -0.815602 | 8.500774e-52 | -8.615850e-47 |
| Msa0124550 | Msa1222280 | 0.827779 | 1.295417e-54 | -8.615850e-47 |
| Msa0130520 | Msa1222280 | 0.805036 | 1.620355e-49 | -8.615850e-47 |
| Msa0132240 | Msa1222280 | 0.852093 | 5.787955e-61 | -8.615850e-47 |
| Msa0169820 | Msa1222280 | 0.825235 | 5.235004e-54 | -8.615850e-47 |
| Msa0175050 | Msa1222280 | 0.871240 | 7.947442e-67 | -8.615850e-47 |
| Msa0183010 | Msa1222280 | -0.818652 | 1.752867e-52 | -8.615850e-47 |
| Msa0230640 | Msa1222280 | -0.801778 | 7.668993e-49 | -8.615850e-47 |
| Msa0370870 | Msa1222280 | 0.801748 | 7.779338e-49 | -8.615850e-47 |
| Msa0388030 | Msa1222280 | -0.828695 | 7.792669e-55 | -8.615850e-47 |
| Msa0389810 | Msa1222280 | 0.824428 | 8.113338e-54 | -8.615850e-47 |
| Msa0438050 | Msa1222280 | 0.806167 | 9.381448e-50 | -8.615850e-47 |
| Msa0468130 | Msa1222280 | 0.824099 | 9.694770e-54 | -8.615850e-47 |
| Msa0982270 | Msa1222280 | 0.822549 | 2.232649e-53 | -8.615850e-47 |
| Msa1006850 | Msa1222280 | 0.801040 | 1.086068e-48 | -8.615850e-47 |
| Msa1021510 | Msa1222280 | 0.831990 | 1.220328e-55 | -8.615850e-47 |
| Msa1105500 | Msa1222280 | 0.814327 | 1.630107e-51 | -8.615850e-47 |
| Msa0266240 | Msa1222280 | 0.819092 | 1.392576e-52 | -8.615850e-47 |
| Msa0278900 | Msa1222280 | 0.826929 | 2.071005e-54 | -8.615850e-47 |
| Msa0287700 | Msa1222280 | 0.803399 | 3.551844e-49 | -8.615850e-47 |
| Msa0328380 | Msa1222280 | 0.813649 | 2.299590e-51 | -8.615850e-47 |
| Msa1132860 | Msa1222280 | -0.812972 | 3.239483e-51 | -8.615850e-47 |
| Msa1135880 | Msa1222280 | 0.805342 | 1.398203e-49 | -8.615850e-47 |
| Msa1168040 | Msa1222280 | -0.810967 | 8.858098e-51 | -8.615850e-47 |
| Msa1174310 | Msa1222280 | 0.867127 | 1.720193e-65 | -8.615850e-47 |
| Msa1203930 | Msa1222280 | 0.805505 | 1.292466e-49 | -8.615850e-47 |
| Msa1205390 | Msa1222280 | 0.828888 | 6.999504e-55 | -8.615850e-47 |
| Msa1207460 | Msa1222280 | -0.805104 | 1.568130e-49 | -8.615850e-47 |
| Msa1215890 | Msa1222280 | 0.804390 | 2.210537e-49 | -8.615850e-47 |
| Msa1222280 | Msa1225730 | -0.815661 | 8.246567e-52 | -8.615850e-47 |
| Msa1222280 | Msa1229610 | 0.845995 | 2.867698e-59 | -8.615850e-47 |
| Msa1222280 | Msa1230830 | 0.821541 | 3.821848e-53 | -8.615850e-47 |
| Msa1222280 | Msa1235400 | 0.866620 | 2.496259e-65 | -8.615850e-47 |
| Msa1222280 | Msa1241800 | 0.827768 | 1.303720e-54 | -8.615850e-47 |
| Msa1222280 | Msa1244200 | 0.802345 | 5.864202e-49 | -8.615850e-47 |
| Msa1222280 | Msa1244930 | 0.838934 | 2.141431e-57 | -8.615850e-47 |
| Msa1222280 | Msa1250310 | 0.822146 | 2.769185e-53 | -8.615850e-47 |
| Msa1222280 | Msa1264770 | 0.885243 | 9.615065e-72 | -8.615850e-47 |
| Msa1222280 | Msa1264860 | -0.852068 | 5.882748e-61 | -8.615850e-47 |
| Msa1222280 | Msa1272320 | 0.847444 | 1.151663e-59 | -8.615850e-47 |
| Msa1222280 | Msa1276510 | 0.856887 | 2.374293e-62 | -8.615850e-47 |
| Msa1222280 | Msa1297310 | 0.824822 | 6.553480e-54 | -8.615850e-47 |
| Msa1222280 | Msa1301650 | 0.800080 | 1.704356e-48 | -8.615850e-47 |
| Msa1222280 | Msa1307740 | 0.833718 | 4.540637e-56 | -8.615850e-47 |
| Msa1222280 | Msa1310220 | 0.854484 | 1.194052e-61 | -8.615850e-47 |
| Msa1222280 | Msa1314770 | 0.876931 | 9.428672e-69 | -8.615850e-47 |
| Msa1222280 | Msa1322200 | 0.819461 | 1.147231e-52 | -8.615850e-47 |
| Msa1222280 | Msa1350720 | 0.808161 | 3.548555e-50 | -8.615850e-47 |
| Msa1222280 | Msa1360240 | 0.827437 | 1.565511e-54 | -8.615850e-47 |
| Msa1222280 | Msa1373350 | 0.850535 | 1.594588e-60 | -8.615850e-47 |
| Msa1222280 | Msa1375700 | -0.800924 | 1.146819e-48 | -8.615850e-47 |
| Msa1222280 | Msa1378230 | 0.819707 | 1.008058e-52 | -8.615850e-47 |
| Msa1222280 | Msa1385020 | 0.823781 | 1.151618e-53 | -8.615850e-47 |
| Msa1222280 | Msa1404240 | -0.821740 | 3.437751e-53 | -8.615850e-47 |
| Msa1222280 | Msa1407650 | 0.869406 | 3.172236e-66 | -8.615850e-47 |
| Msa1222280 | Msa1433440 | 0.812990 | 3.210512e-51 | -8.615850e-47 |
| Msa1222280 | Msa1435400 | 0.819433 | 1.164500e-52 | -8.615850e-47 |
| Msa1222280 | Msa1463650 | -0.833827 | 4.263418e-56 | -8.615850e-47 |
| Msa0491500 | Msa1222280 | 0.807280 | 5.459782e-50 | -8.615850e-47 |
| Msa0491520 | Msa1222280 | 0.816078 | 6.655304e-52 | -8.615850e-47 |
| Msa0504410 | Msa1222280 | 0.814165 | 1.770528e-51 | -8.615850e-47 |
| Msa0510560 | Msa1222280 | 0.811642 | 6.321784e-51 | -8.615850e-47 |
| Msa0521620 | Msa1222280 | 0.801449 | 8.956792e-49 | -8.615850e-47 |
| Msa0527980 | Msa1222280 | -0.817888 | 2.611002e-52 | -8.615850e-47 |
| Msa0530650 | Msa1222280 | 0.818705 | 1.705030e-52 | -8.615850e-47 |
| Msa0580390 | Msa1222280 | -0.807332 | 5.322949e-50 | -8.615850e-47 |
| Msa0587190 | Msa1222280 | 0.814322 | 1.633962e-51 | -8.615850e-47 |
| Msa0845070 | Msa1222280 | 0.826976 | 2.018554e-54 | -8.615850e-47 |
| Msa0876360 | Msa1222280 | 0.812566 | 3.975863e-51 | -8.615850e-47 |
| Msa0881160 | Msa1222280 | 0.975079 | 2.671064e-139 | -8.615850e-47 |
| Msa0930820 | Msa1222280 | 0.813697 | 2.244479e-51 | -8.615850e-47 |
| Msa0941540 | Msa1222280 | 0.803947 | 2.733494e-49 | -8.615850e-47 |
| Msa0944730 | Msa1222280 | 0.805589 | 1.241018e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222280 | MtrunA17_Chr4g0073421 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Msa1222280 | MtrunA17_Chr1g0149221 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 3.52e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1222280 | AT4G30490.1 | 72.685 | 432 | 107 | 3 | 67 | 487 | 63 | 494 | 0.0 | 663 |
| Msa1222280 | AT4G28070.2 | 73.923 | 418 | 105 | 2 | 77 | 490 | 53 | 470 | 0.0 | 649 |
| Msa1222280 | AT4G28070.1 | 71.770 | 418 | 105 | 3 | 77 | 490 | 53 | 461 | 0.0 | 623 |
| Msa1222280 | AT2G25530.1 | 30.732 | 410 | 209 | 12 | 148 | 482 | 233 | 642 | 9.92e-46 | 169 |
| Msa1222280 | AT2G25530.2 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.27e-37 | 145 |
Find 120 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCATTTCCTCATTTC+TGG | 0.034647 | 8_1:-86549383 | Msa1222280:five_prime_UTR |
| GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 8_1:-86548061 | Msa1222280:CDS |
| CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 8_1:-86546478 | Msa1222280:CDS |
| CACTCCATTGTACATTATTT+TGG | 0.164150 | 8_1:+86545046 | None:intergenic |
| CATTACTACTTCCACTTCTT+GGG | 0.228752 | 8_1:+86546682 | None:intergenic |
| CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 8_1:-86548076 | Msa1222280:CDS |
| CCATTACTACTTCCACTTCT+TGG | 0.244604 | 8_1:+86546681 | None:intergenic |
| CTAGTTAGTATCATAGTTAT+TGG | 0.246189 | 8_1:-86545076 | Msa1222280:three_prime_UTR |
| GTGTCATGTCATGTTGGTTT+TGG | 0.251233 | 8_1:+86549567 | None:intergenic |
| CCTTTCATTTCCTCATTTCT+GGG | 0.272586 | 8_1:-86549382 | Msa1222280:five_prime_UTR |
| CCACCCTCATATAGATTATC+TGG | 0.285514 | 8_1:+86547080 | None:intergenic |
| AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 8_1:+86546513 | None:intergenic |
| GCATACATAGGGAGTGAAAA+TGG | 0.307071 | 8_1:-86545247 | Msa1222280:three_prime_UTR |
| TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 8_1:-86546205 | Msa1222280:CDS |
| ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 8_1:-86547393 | Msa1222280:intron |
| TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 8_1:+86545702 | None:intergenic |
| ATCTTATCATCCATCATTCC+AGG | 0.334047 | 8_1:-86549335 | Msa1222280:intron |
| AAATATCCTACATACCTTAC+AGG | 0.341666 | 8_1:+86548240 | None:intergenic |
| TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 8_1:-86547794 | Msa1222280:intron |
| TGTAACACAAACAACAATAT+TGG | 0.349539 | 8_1:-86545203 | Msa1222280:three_prime_UTR |
| GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 8_1:-86546774 | Msa1222280:CDS |
| ATCAGCATCTTCCCTCTATC+TGG | 0.354219 | 8_1:-86549677 | Msa1222280:five_prime_UTR |
| CAAAACAGCAATATTGATAT+TGG | 0.355240 | 8_1:+86549467 | None:intergenic |
| TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 8_1:+86547724 | None:intergenic |
| AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 8_1:+86545311 | None:intergenic |
| TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 8_1:-86548117 | Msa1222280:intron |
| TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 8_1:-86546755 | Msa1222280:CDS |
| AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 8_1:-86548553 | Msa1222280:CDS |
| CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 8_1:+86548763 | None:intergenic |
| CATCTGCAGACCGTTAGATT+TGG | 0.396173 | 8_1:-86545130 | Msa1222280:three_prime_UTR |
| TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 8_1:-86546149 | Msa1222280:CDS |
| TCTTGCTAAGTGCTTATTGT+TGG | 0.403047 | 8_1:-86544999 | Msa1222280:three_prime_UTR |
| CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 8_1:-86546541 | Msa1222280:CDS |
| ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 8_1:-86547036 | Msa1222280:intron |
| TGTCCTTGAAGCTTGAAGAT+AGG | 0.415577 | 8_1:-86545314 | Msa1222280:exon |
| GATCAACAGCAGAGAATACT+TGG | 0.418394 | 8_1:-86545380 | Msa1222280:CDS |
| GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 8_1:-86547440 | Msa1222280:CDS |
| ATGGATGATAAGATAAGAAC+AGG | 0.424664 | 8_1:+86549344 | None:intergenic |
| CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 8_1:-86545661 | Msa1222280:CDS |
| AAAATAAAACATCCAGATAG+AGG | 0.431655 | 8_1:+86549665 | None:intergenic |
| ATCAGCTGAACACAATAATC+TGG | 0.439826 | 8_1:+86545786 | None:intergenic |
| CATACATAGGGAGTGAAAAT+GGG | 0.442649 | 8_1:-86545246 | Msa1222280:three_prime_UTR |
| TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 8_1:-86546550 | Msa1222280:intron |
| TCTGATAAACATGTCTCAAT+TGG | 0.445162 | 8_1:+86548914 | None:intergenic |
| TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 8_1:+86547034 | None:intergenic |
| CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 8_1:-86545633 | Msa1222280:intron |
| GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 8_1:-86546770 | Msa1222280:CDS |
| GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 8_1:-86546496 | Msa1222280:CDS |
| ATATATATCATACCTACTAA+TGG | 0.455546 | 8_1:+86545621 | None:intergenic |
| TGCTCCAGATAATCTATATG+AGG | 0.460863 | 8_1:-86547084 | Msa1222280:CDS |
| ATTGTTGTTGTAGCATACAT+AGG | 0.466535 | 8_1:-86545259 | Msa1222280:three_prime_UTR |
| CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 8_1:-86546680 | Msa1222280:CDS |
| CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 8_1:-86546681 | Msa1222280:CDS |
| TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 8_1:+86548265 | None:intergenic |
| TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 8_1:+86546768 | None:intergenic |
| CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 8_1:-86547453 | Msa1222280:CDS |
| GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 8_1:-86548546 | Msa1222280:CDS |
| CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 8_1:+86545703 | None:intergenic |
| TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 8_1:+86546505 | None:intergenic |
| GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 8_1:+86545723 | None:intergenic |
| CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 8_1:+86546536 | None:intergenic |
| TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 8_1:-86548052 | Msa1222280:CDS |
| AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 8_1:-86545784 | Msa1222280:CDS |
| TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 8_1:-86546785 | Msa1222280:intron |
| GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 8_1:-86548532 | Msa1222280:intron |
| AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 8_1:-86546922 | Msa1222280:CDS |
| GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 8_1:-86548280 | Msa1222280:CDS |
| ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 8_1:+86546689 | None:intergenic |
| TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 8_1:-86548561 | Msa1222280:CDS |
| AGAAAACGAACCTGGAATGA+TGG | 0.523555 | 8_1:+86549325 | None:intergenic |
| TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 8_1:-86546716 | Msa1222280:CDS |
| ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 8_1:+86546683 | None:intergenic |
| GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 8_1:+86548275 | None:intergenic |
| GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 8_1:-86548727 | Msa1222280:CDS |
| TTGTTGTTGTAGCATACATA+GGG | 0.543752 | 8_1:-86545258 | Msa1222280:three_prime_UTR |
| ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 8_1:-86546146 | Msa1222280:CDS |
| AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 8_1:-86545728 | Msa1222280:CDS |
| AATTTACCATGAATTCATCA+AGG | 0.550011 | 8_1:+86547387 | None:intergenic |
| ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 8_1:+86547097 | None:intergenic |
| ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 8_1:+86547035 | None:intergenic |
| AGAAGAGAATCCCAGAAATG+AGG | 0.554653 | 8_1:+86549372 | None:intergenic |
| CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 8_1:-86548029 | Msa1222280:CDS |
| AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 8_1:-86548058 | Msa1222280:CDS |
| TGTGCAAGTGCCAAATCTAA+CGG | 0.557812 | 8_1:+86545120 | None:intergenic |
| TTTCAAATAAAAGAAAAGAA+AGG | 0.562961 | 8_1:-86545155 | Msa1222280:three_prime_UTR |
| GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 8_1:-86548597 | Msa1222280:intron |
| GGAGTGAAAATGGGGTCAAG+TGG | 0.570176 | 8_1:-86545237 | Msa1222280:three_prime_UTR |
| CAAATCTAACGGTCTGCAGA+TGG | 0.575054 | 8_1:+86545131 | None:intergenic |
| TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 8_1:+86548753 | None:intergenic |
| TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 8_1:-86547244 | Msa1222280:CDS |
| CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 8_1:-86548046 | Msa1222280:CDS |
| TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 8_1:-86545660 | Msa1222280:CDS |
| AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 8_1:-86545344 | Msa1222280:CDS |
| CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 8_1:+86548573 | None:intergenic |
| CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 8_1:-86546693 | Msa1222280:CDS |
| GATATTGTGTCATGTCATGT+TGG | 0.587354 | 8_1:+86549561 | None:intergenic |
| ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 8_1:+86548747 | None:intergenic |
| ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 8_1:-86547069 | Msa1222280:CDS |
| GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 8_1:-86546162 | Msa1222280:CDS |
| CCCAGAAATGAGGAAATGAA+AGG | 0.592333 | 8_1:+86549382 | None:intergenic |
| GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 8_1:+86547270 | None:intergenic |
| AAATAAAACATCCAGATAGA+GGG | 0.600644 | 8_1:+86549666 | None:intergenic |
| TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 8_1:-86547471 | Msa1222280:intron |
| TTTGAGTTGGACATTTGACT+CGG | 0.602275 | 8_1:+86549608 | None:intergenic |
| CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 8_1:+86547447 | None:intergenic |
| TGACTACCGCAAAATGACTT+CGG | 0.612203 | 8_1:-86546890 | Msa1222280:intron |
| AGAACCAAAATAATGTACAA+TGG | 0.615266 | 8_1:-86545050 | Msa1222280:three_prime_UTR |
| TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 8_1:+86547437 | None:intergenic |
| GCTCCAGATAATCTATATGA+GGG | 0.631147 | 8_1:-86547083 | Msa1222280:CDS |
| AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 8_1:+86546481 | None:intergenic |
| CCAGATAATCTATATGAGGG+TGG | 0.640752 | 8_1:-86547080 | Msa1222280:CDS |
| GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 8_1:+86546535 | None:intergenic |
| CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 8_1:-86545729 | Msa1222280:CDS |
| TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 8_1:-86547070 | Msa1222280:CDS |
| ATACATAGGGAGTGAAAATG+GGG | 0.651485 | 8_1:-86545245 | Msa1222280:three_prime_UTR |
| TATCATACCTACTAATGGTG+CGG | 0.657100 | 8_1:+86545626 | None:intergenic |
| AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 8_1:-86545720 | Msa1222280:CDS |
| GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 8_1:-86547470 | Msa1222280:intron |
| TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 8_1:+86548767 | None:intergenic |
| GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 8_1:-86548724 | Msa1222280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTATTGCA+GGG | - | chr8_1:86545629-86545648 | Msa1222280:intron | 10.0% |
| !!! | GTTTTTTTTTTTTTTATTGC+AGG | - | chr8_1:86545628-86545647 | Msa1222280:intron | 15.0% |
| !!! | CTTTGAACATTAATTAATTT+TGG | - | chr8_1:86547072-86547091 | Msa1222280:CDS | 15.0% |
| !!! | GCTTTAAATATTTTTATAGT+TGG | - | chr8_1:86547641-86547660 | Msa1222280:intron | 15.0% |
| !!! | TATTTGTTTTTATGCTAATT+TGG | - | chr8_1:86547848-86547867 | Msa1222280:intron | 15.0% |
| !! | ATTAATTTAATGTTCCAAAA+TGG | + | chr8_1:86548259-86548278 | None:intergenic | 15.0% |
| !!! | ATCTTTAAAATTAGAATTTC+AGG | + | chr8_1:86548709-86548728 | None:intergenic | 15.0% |
| !!! | AAAAATTGTACAATTAGTTT+TGG | - | chr8_1:86549060-86549079 | Msa1222280:intron | 15.0% |
| !!! | TTGGTTTTTATTCATAAAAT+AGG | - | chr8_1:86549161-86549180 | Msa1222280:intron | 15.0% |
| !!! | TGGTTTTTATTCATAAAATA+GGG | - | chr8_1:86549162-86549181 | Msa1222280:intron | 15.0% |
| !! | TTTCAAATAAAAGAAAAGAA+AGG | - | chr8_1:86549496-86549515 | Msa1222280:five_prime_UTR | 15.0% |
| !!! | TTATTTTTGTAATTGTAACG+TGG | - | chr8_1:86545002-86545021 | Msa1222280:three_prime_UTR | 20.0% |
| !!! | GATGTTTTTTTTTTTTGAGT+TGG | + | chr8_1:86545059-86545078 | None:intergenic | 20.0% |
| !!! | ATTTTTGCATGTATTGTAAT+TGG | + | chr8_1:86545217-86545236 | None:intergenic | 20.0% |
| !!! | TTTTCTTATCTGATTTGTAT+TGG | - | chr8_1:86546017-86546036 | Msa1222280:intron | 20.0% |
| !!! | TAAAGATATAAACCTTTTAC+AGG | + | chr8_1:86546590-86546609 | None:intergenic | 20.0% |
| !! | GTAAAAGGTTTATATCTTTA+TGG | - | chr8_1:86546590-86546609 | Msa1222280:intron | 20.0% |
| !! | ACAAAATTAAGAAATCAAGA+CGG | + | chr8_1:86546689-86546708 | None:intergenic | 20.0% |
| !! | TATGTAAACTTACTTGTAAT+AGG | + | chr8_1:86546930-86546949 | None:intergenic | 20.0% |
| !! | AAAAAAAGGATACATCTAAA+AGG | + | chr8_1:86546965-86546984 | None:intergenic | 20.0% |
| !! | CCAAAAGAATACATAATTAT+TGG | + | chr8_1:86547017-86547036 | None:intergenic | 20.0% |
| !!! | CCAATAATTATGTATTCTTT+TGG | - | chr8_1:86547014-86547033 | Msa1222280:intron | 20.0% |
| !!! | AATATTTTTATAGTTGGAAG+TGG | - | chr8_1:86547647-86547666 | Msa1222280:intron | 20.0% |
| !! | TTCTTTCATTGTGATAATTT+CGG | - | chr8_1:86548316-86548335 | Msa1222280:CDS | 20.0% |
| !!! | TATTAAAATATGAAGTGCTT+GGG | + | chr8_1:86548602-86548621 | None:intergenic | 20.0% |
| !!! | TGGCATTAATTTTATATAGA+GGG | + | chr8_1:86548805-86548824 | None:intergenic | 20.0% |
| !!! | ATGGCATTAATTTTATATAG+AGG | + | chr8_1:86548806-86548825 | None:intergenic | 20.0% |
| !! | ATATATATCATACCTACTAA+TGG | + | chr8_1:86549033-86549052 | None:intergenic | 20.0% |
| !! | ATGAATAAAAACCAAACAAT+GGG | + | chr8_1:86549156-86549175 | None:intergenic | 20.0% |
| !! | TATGAATAAAAACCAAACAA+TGG | + | chr8_1:86549157-86549176 | None:intergenic | 20.0% |
| ! | AAATAAAACATCCAGATAGA+GGG | + | chr8_1:86544988-86545007 | None:intergenic | 25.0% |
| ! | AAAATAAAACATCCAGATAG+AGG | + | chr8_1:86544989-86545008 | None:intergenic | 25.0% |
| ! | CAAAACAGCAATATTGATAT+TGG | + | chr8_1:86545187-86545206 | None:intergenic | 25.0% |
| !!! | AATGAAAGGTTGAGTTTTTT+GGG | + | chr8_1:86545258-86545277 | None:intergenic | 25.0% |
| !!! | AAATGAAAGGTTGAGTTTTT+TGG | + | chr8_1:86545259-86545278 | None:intergenic | 25.0% |
| ! | CTAACATATTGGAATGAATT+GGG | - | chr8_1:86545445-86545464 | Msa1222280:intron | 25.0% |
| ! | AATGAATTGGGATTTGAAAA+TGG | - | chr8_1:86545457-86545476 | Msa1222280:intron | 25.0% |
| !! | GGATTCTTGAAAAATTTTGT+GGG | - | chr8_1:86545650-86545669 | Msa1222280:CDS | 25.0% |
| !! | TGAAATTATTTTCCCTACTT+TGG | - | chr8_1:86546178-86546197 | Msa1222280:CDS | 25.0% |
| !!! | TTTTTTGCTTTCTTTTGTTG+AGG | - | chr8_1:86546298-86546317 | Msa1222280:intron | 25.0% |
| ! | TGTTCAAATCTTGAACTTTA+TGG | - | chr8_1:86546457-86546476 | Msa1222280:intron | 25.0% |
| !!! | CCTTTTTTTTTTTACAGACA+CGG | - | chr8_1:86546524-86546543 | Msa1222280:CDS | 25.0% |
| !!! | CTTTTTTTTTTTACAGACAC+GGG | - | chr8_1:86546525-86546544 | Msa1222280:CDS | 25.0% |
| ! | AAAGGTTTATATCTTTATGG+AGG | - | chr8_1:86546593-86546612 | Msa1222280:intron | 25.0% |
| ! | TTTATGATCAATTGTGAGTT+TGG | - | chr8_1:86546651-86546670 | Msa1222280:intron | 25.0% |
| !! | TTTTGTATTACATGCTATTG+AGG | - | chr8_1:86546703-86546722 | Msa1222280:CDS | 25.0% |
| ! | AATTTACCATGAATTCATCA+AGG | + | chr8_1:86547267-86547286 | None:intergenic | 25.0% |
| ! | AGATAATGATTTCATTGTTG+TGG | - | chr8_1:86548283-86548302 | Msa1222280:CDS | 25.0% |
| ! | GGAAATCTGTAAAATTATGA+AGG | + | chr8_1:86548365-86548384 | None:intergenic | 25.0% |
| ! | TTTATGGATCTCTCATATAA+TGG | + | chr8_1:86548386-86548405 | None:intergenic | 25.0% |
| !!! | CATTGTGTAACATTGATTTA+TGG | + | chr8_1:86548402-86548421 | None:intergenic | 25.0% |
| ! | TTATTACTAAGCCCAAAAAT+CGG | + | chr8_1:86548476-86548495 | None:intergenic | 25.0% |
| ! | AGAAGACAAAGTTTAAATGT+GGG | + | chr8_1:86548555-86548574 | None:intergenic | 25.0% |
| !! | CTATTAAAATATGAAGTGCT+TGG | + | chr8_1:86548603-86548622 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAGAGATCAAGA+GGG | + | chr8_1:86548896-86548915 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAAAGAGATCAAG+AGG | + | chr8_1:86548897-86548916 | None:intergenic | 25.0% |
| ! | AAAAATAGTAACAATATCCG+AGG | - | chr8_1:86548911-86548930 | Msa1222280:CDS | 25.0% |
| ! | TGAATAAAAACCAAACAATG+GGG | + | chr8_1:86549155-86549174 | None:intergenic | 25.0% |
| ! | TGATCAGTAATCATTAATCA+TGG | + | chr8_1:86549223-86549242 | None:intergenic | 25.0% |
| ! | TGTAACACAAACAACAATAT+TGG | - | chr8_1:86549448-86549467 | Msa1222280:five_prime_UTR | 25.0% |
| ! | CTAGTTAGTATCATAGTTAT+TGG | - | chr8_1:86549575-86549594 | Msa1222280:five_prime_UTR | 25.0% |
| ! | AGAACCAAAATAATGTACAA+TGG | - | chr8_1:86549601-86549620 | Msa1222280:five_prime_UTR | 25.0% |
| ATGGATGATAAGATAAGAAC+AGG | + | chr8_1:86545310-86545329 | None:intergenic | 30.0% | |
| TAGGAAGATTGCTGAAAAAA+GGG | + | chr8_1:86545428-86545447 | None:intergenic | 30.0% | |
| TTAGGAAGATTGCTGAAAAA+AGG | + | chr8_1:86545429-86545448 | None:intergenic | 30.0% | |
| CCAATTCATTCCAATATGTT+AGG | + | chr8_1:86545447-86545466 | None:intergenic | 30.0% | |
| CCTAACATATTGGAATGAAT+TGG | - | chr8_1:86545444-86545463 | Msa1222280:intron | 30.0% | |
| ! | GGGATTCTTGAAAAATTTTG+TGG | - | chr8_1:86545649-86545668 | Msa1222280:CDS | 30.0% |
| TCTGATAAACATGTCTCAAT+TGG | + | chr8_1:86545740-86545759 | None:intergenic | 30.0% | |
| ! | CAACACTTTTCAAAGTAACA+AGG | + | chr8_1:86545804-86545823 | None:intergenic | 30.0% |
| TATGAACGAAGAATTGCTAA+TGG | - | chr8_1:86546090-86546109 | Msa1222280:intron | 30.0% | |
| AAGAATTGCTAATGGTGAAT+TGG | - | chr8_1:86546098-86546117 | Msa1222280:intron | 30.0% | |
| !! | TTTTCCCTACTTTGGTTTAT+CGG | - | chr8_1:86546186-86546205 | Msa1222280:CDS | 30.0% |
| AAATATCCTACATACCTTAC+AGG | + | chr8_1:86546414-86546433 | None:intergenic | 30.0% | |
| CCGTGTCTGTAAAAAAAAAA+AGG | + | chr8_1:86546527-86546546 | None:intergenic | 30.0% | |
| TTATATCTTTATGGAGGAGT+AGG | - | chr8_1:86546599-86546618 | Msa1222280:intron | 30.0% | |
| !!! | ATTTTCAAGTCTCAGTGTAA+GGG | - | chr8_1:86546739-86546758 | Msa1222280:CDS | 30.0% |
| TTTAACCTCATAAGAACACA+TGG | + | chr8_1:86546797-86546816 | None:intergenic | 30.0% | |
| ! | CTCTTTTTCTTCCAATTTGA+GGG | + | chr8_1:86546871-86546890 | None:intergenic | 30.0% |
| CAAGTAGGGAATAGAAAAAA+AGG | + | chr8_1:86546979-86546998 | None:intergenic | 30.0% | |
| TAATTGACAAACAGAGTATG+AGG | - | chr8_1:86547132-86547151 | Msa1222280:intron | 30.0% | |
| ATTATGCCTTGATGAATTCA+TGG | - | chr8_1:86547258-86547277 | Msa1222280:CDS | 30.0% | |
| CATAAAATCCTGTTGTATAG+AGG | + | chr8_1:86547463-86547482 | None:intergenic | 30.0% | |
| ! | CTCTATACAACAGGATTTTA+TGG | - | chr8_1:86547461-86547480 | Msa1222280:CDS | 30.0% |
| CTTCATTTCTTCAATGTGTT+TGG | - | chr8_1:86547509-86547528 | Msa1222280:intron | 30.0% | |
| TACATCAGTATACACATACT+AGG | + | chr8_1:86547705-86547724 | None:intergenic | 30.0% | |
| TAGTATGTGTATACTGATGT+AGG | - | chr8_1:86547704-86547723 | Msa1222280:intron | 30.0% | |
| TTTATGCTAATTTGGACTGT+AGG | - | chr8_1:86547856-86547875 | Msa1222280:intron | 30.0% | |
| TTATGCTAATTTGGACTGTA+GGG | - | chr8_1:86547857-86547876 | Msa1222280:intron | 30.0% | |
| AAAAAGTTTCAGCAGTTGAT+TGG | - | chr8_1:86547929-86547948 | Msa1222280:intron | 30.0% | |
| AAGCTCTTCAAAAGGAAAAT+AGG | + | chr8_1:86548141-86548160 | None:intergenic | 30.0% | |
| TTTCATACTTTAGCACTTGA+TGG | - | chr8_1:86548446-86548465 | Msa1222280:intron | 30.0% | |
| TATTACTAAGCCCAAAAATC+GGG | + | chr8_1:86548475-86548494 | None:intergenic | 30.0% | |
| ! | TGGATGTAAGTCCTTTTAAA+TGG | - | chr8_1:86548525-86548544 | Msa1222280:intron | 30.0% |
| GAGAAGACAAAGTTTAAATG+TGG | + | chr8_1:86548556-86548575 | None:intergenic | 30.0% | |
| ACATAATCTCATTCATAGCT+AGG | + | chr8_1:86548646-86548665 | None:intergenic | 30.0% | |
| AAGCTTATTCCACTTCAATA+AGG | - | chr8_1:86548743-86548762 | Msa1222280:CDS | 30.0% | |
| TGTTACAAACAAACAAAGCA+TGG | + | chr8_1:86548825-86548844 | None:intergenic | 30.0% | |
| !! | ATGCTTTGTTTGTTTGTAAC+AGG | - | chr8_1:86548824-86548843 | Msa1222280:CDS | 30.0% |
| ! | TTTGTGTTGACAATGAACTA+GGG | - | chr8_1:86548991-86549010 | Msa1222280:five_prime_UTR | 30.0% |
| TCATAAAATAGGGCGAAAAA+TGG | - | chr8_1:86549172-86549191 | Msa1222280:intron | 30.0% | |
| ! | ATTGTTGTTGTAGCATACAT+AGG | - | chr8_1:86549392-86549411 | Msa1222280:five_prime_UTR | 30.0% |
| ! | TTGTTGTTGTAGCATACATA+GGG | - | chr8_1:86549393-86549412 | Msa1222280:five_prime_UTR | 30.0% |
| ! | CACTCCATTGTACATTATTT+TGG | + | chr8_1:86549608-86549627 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGACATTTGACT+CGG | + | chr8_1:86545046-86545065 | None:intergenic | 35.0% |
| !!! | TGTCATGTCATGTTGGTTTT+GGG | + | chr8_1:86545086-86545105 | None:intergenic | 35.0% |
| GATATTGTGTCATGTCATGT+TGG | + | chr8_1:86545093-86545112 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGGAGTGAAAAGA+GGG | + | chr8_1:86545245-86545264 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGGGAGTGAAAAG+AGG | + | chr8_1:86545246-86545265 | None:intergenic | 35.0% |
| ACCTTTCATTTCCTCATTTC+TGG | - | chr8_1:86545268-86545287 | Msa1222280:three_prime_UTR | 35.0% | |
| CCTTTCATTTCCTCATTTCT+GGG | - | chr8_1:86545269-86545288 | Msa1222280:three_prime_UTR | 35.0% | |
| ATCTTATCATCCATCATTCC+AGG | - | chr8_1:86545316-86545335 | Msa1222280:exon | 35.0% | |
| TAATGATGAGAAAACGAACC+TGG | + | chr8_1:86545337-86545356 | None:intergenic | 35.0% | |
| CAGCAATCTTCCTAACATAT+TGG | - | chr8_1:86545434-86545453 | Msa1222280:intron | 35.0% | |
| TGGATGTGGTAATAAATGGA+CGG | + | chr8_1:86545887-86545906 | None:intergenic | 35.0% | |
| CTTGTGGATGTGGTAATAAA+TGG | + | chr8_1:86545891-86545910 | None:intergenic | 35.0% | |
| GTTACAGTAACTAACAGAAG+TGG | - | chr8_1:86546054-86546073 | Msa1222280:intron | 35.0% | |
| ! | TTTCCCTACTTTGGTTTATC+GGG | - | chr8_1:86546187-86546206 | Msa1222280:CDS | 35.0% |
| TTTCCCGATAAACCAAAGTA+GGG | + | chr8_1:86546193-86546212 | None:intergenic | 35.0% | |
| ! | TTTTCCCGATAAACCAAAGT+AGG | + | chr8_1:86546194-86546213 | None:intergenic | 35.0% |
| ATCATGCATGCATTTGTTCA+TGG | - | chr8_1:86546233-86546252 | Msa1222280:intron | 35.0% | |
| ! | TTGCTTTCTTTTGTTGAGGT+AGG | - | chr8_1:86546302-86546321 | Msa1222280:intron | 35.0% |
| TTTCAGAATTGCGATCCAAT+TGG | + | chr8_1:86546389-86546408 | None:intergenic | 35.0% | |
| ! | GCAATTCTGAAAAACCTGTA+AGG | - | chr8_1:86546397-86546416 | Msa1222280:intron | 35.0% |
| GAAAAACCTGTAAGGTATGT+AGG | - | chr8_1:86546405-86546424 | Msa1222280:intron | 35.0% | |
| ATTTGAACAGACATATCAGC+AGG | + | chr8_1:86546446-86546465 | None:intergenic | 35.0% | |
| ! | TCTGTTTTCACATCATGTTG+AGG | - | chr8_1:86546482-86546501 | Msa1222280:CDS | 35.0% |
| !!! | TTTTTTTTTACAGACACGGG+TGG | - | chr8_1:86546528-86546547 | Msa1222280:CDS | 35.0% |
| ! | TGCTATTGAGGCAAATTTTG+AGG | - | chr8_1:86546715-86546734 | Msa1222280:CDS | 35.0% |
| !!! | CATTTTCAAGTCTCAGTGTA+AGG | - | chr8_1:86546738-86546757 | Msa1222280:CDS | 35.0% |
| !!! | TTTTCAAGTCTCAGTGTAAG+GGG | - | chr8_1:86546740-86546759 | Msa1222280:CDS | 35.0% |
| ! | AGTGTAAGGGGAATATTTTG+AGG | - | chr8_1:86546752-86546771 | Msa1222280:CDS | 35.0% |
| TTATGCCATGTGTTCTTATG+AGG | - | chr8_1:86546789-86546808 | Msa1222280:intron | 35.0% | |
| AATCAAGCATACAATAGAGC+TGG | + | chr8_1:86546833-86546852 | None:intergenic | 35.0% | |
| ! | CCTCTTTTTCTTCCAATTTG+AGG | + | chr8_1:86546872-86546891 | None:intergenic | 35.0% |
| CCTCAAATTGGAAGAAAAAG+AGG | - | chr8_1:86546869-86546888 | Msa1222280:intron | 35.0% | |
| TTCTATTCCCTACTTGACTT+AGG | - | chr8_1:86546983-86547002 | Msa1222280:intron | 35.0% | |
| TCTATTCCCTACTTGACTTA+GGG | - | chr8_1:86546984-86547003 | Msa1222280:intron | 35.0% | |
| ATTCTTCCCTAAGTCAAGTA+GGG | + | chr8_1:86546993-86547012 | None:intergenic | 35.0% | |
| AATTCTTCCCTAAGTCAAGT+AGG | + | chr8_1:86546994-86547013 | None:intergenic | 35.0% | |
| GCGATTAAGTATCAATGCAT+CGG | + | chr8_1:86547384-86547403 | None:intergenic | 35.0% | |
| TTCAGACATCTATTCAGCAA+AGG | - | chr8_1:86547407-86547426 | Msa1222280:CDS | 35.0% | |
| TGCTCCAGATAATCTATATG+AGG | - | chr8_1:86547567-86547586 | Msa1222280:intron | 35.0% | |
| GCTCCAGATAATCTATATGA+GGG | - | chr8_1:86547568-86547587 | Msa1222280:intron | 35.0% | |
| ACCTTCAATGTTGCAATGAA+GGG | + | chr8_1:86547619-86547638 | None:intergenic | 35.0% | |
| TACCTTCAATGTTGCAATGA+AGG | + | chr8_1:86547620-86547639 | None:intergenic | 35.0% | |
| ATTACTACTTCCACTTCTTG+GGG | + | chr8_1:86547971-86547990 | None:intergenic | 35.0% | |
| CATTACTACTTCCACTTCTT+GGG | + | chr8_1:86547972-86547991 | None:intergenic | 35.0% | |
| CAAGAAGTGGAAGTAGTAAT+GGG | - | chr8_1:86547971-86547990 | Msa1222280:intron | 35.0% | |
| ! | TATTGCTCGTTTTCTTCATC+AGG | - | chr8_1:86548091-86548110 | Msa1222280:CDS | 35.0% |
| TTGTCACAAAGCTCTTCAAA+AGG | + | chr8_1:86548149-86548168 | None:intergenic | 35.0% | |
| ATGTGGGCAAACCATTTAAA+AGG | + | chr8_1:86548539-86548558 | None:intergenic | 35.0% | |
| ! | CACTTCAATAAGGCATCATT+GGG | - | chr8_1:86548753-86548772 | Msa1222280:CDS | 35.0% |
| AGAGGGTAACTAAAATGCAT+AGG | + | chr8_1:86548788-86548807 | None:intergenic | 35.0% | |
| ATCAGCTGAACACAATAATC+TGG | + | chr8_1:86548868-86548887 | None:intergenic | 35.0% | |
| AGATTATTGTGTTCAGCTGA+TGG | - | chr8_1:86548867-86548886 | Msa1222280:CDS | 35.0% | |
| AATATCCGAGGCTAAACAAA+GGG | - | chr8_1:86548923-86548942 | Msa1222280:CDS | 35.0% | |
| !!! | ATTTTTTCTCGATCTCGAAG+AGG | + | chr8_1:86548958-86548977 | None:intergenic | 35.0% |
| GAGATCGAGAAAAAATGATG+AGG | - | chr8_1:86548962-86548981 | Msa1222280:exon | 35.0% | |
| ! | CTTTGTGTTGACAATGAACT+AGG | - | chr8_1:86548990-86549009 | Msa1222280:five_prime_UTR | 35.0% |
| TATCATACCTACTAATGGTG+CGG | + | chr8_1:86549028-86549047 | None:intergenic | 35.0% | |
| AGATCATGAACAAACTCTAG+AGG | - | chr8_1:86549100-86549119 | Msa1222280:intron | 35.0% | |
| ATGTAAATTGCCCCATTGTT+TGG | - | chr8_1:86549142-86549161 | Msa1222280:intron | 35.0% | |
| AGCAGAAAAGAAAGAAAGAG+AGG | - | chr8_1:86549307-86549326 | Msa1222280:intron | 35.0% | |
| AATCCTATCTTCAAGCTTCA+AGG | + | chr8_1:86549343-86549362 | None:intergenic | 35.0% | |
| CATACATAGGGAGTGAAAAT+GGG | - | chr8_1:86549405-86549424 | Msa1222280:five_prime_UTR | 35.0% | |
| ATACATAGGGAGTGAAAATG+GGG | - | chr8_1:86549406-86549425 | Msa1222280:five_prime_UTR | 35.0% | |
| TCTTGCTAAGTGCTTATTGT+TGG | - | chr8_1:86549652-86549671 | Msa1222280:five_prime_UTR | 35.0% | |
| !!! | GTGTCATGTCATGTTGGTTT+TGG | + | chr8_1:86545087-86545106 | None:intergenic | 40.0% |
| CCCAGAAATGAGGAAATGAA+AGG | + | chr8_1:86545272-86545291 | None:intergenic | 40.0% | |
| AGAAGAGAATCCCAGAAATG+AGG | + | chr8_1:86545282-86545301 | None:intergenic | 40.0% | |
| AGAAAACGAACCTGGAATGA+TGG | + | chr8_1:86545329-86545348 | None:intergenic | 40.0% | |
| TGAGATAGATCTTGTGGATG+TGG | + | chr8_1:86545901-86545920 | None:intergenic | 40.0% | |
| ATCAGCTGAGATAGATCTTG+TGG | + | chr8_1:86545907-86545926 | None:intergenic | 40.0% | |
| GATGCTGTGAAGATCACAAA+TGG | - | chr8_1:86545924-86545943 | Msa1222280:intron | 40.0% | |
| GCTAATGGTGAATTGGTAGA+TGG | - | chr8_1:86546105-86546124 | Msa1222280:intron | 40.0% | |
| GTTTATCGGGAAAATGTTGC+TGG | - | chr8_1:86546200-86546219 | Msa1222280:CDS | 40.0% | |
| !!! | GCTTGATTTTTTTCATCCCC+AGG | - | chr8_1:86546845-86546864 | Msa1222280:intron | 40.0% |
| TGTCACAGCTTGAGATTTGT+TGG | - | chr8_1:86547335-86547354 | Msa1222280:intron | 40.0% | |
| !! | GAGATTTGTTGGTCTTCTGT+AGG | - | chr8_1:86547346-86547365 | Msa1222280:intron | 40.0% |
| CCACCCTCATATAGATTATC+TGG | + | chr8_1:86547574-86547593 | None:intergenic | 40.0% | |
| CCAGATAATCTATATGAGGG+TGG | - | chr8_1:86547571-86547590 | Msa1222280:intron | 40.0% | |
| ACCCTTCATTGCAACATTGA+AGG | - | chr8_1:86547615-86547634 | Msa1222280:intron | 40.0% | |
| AGATGCATAGCTCATGAGAT+TGG | - | chr8_1:86547729-86547748 | Msa1222280:intron | 40.0% | |
| TGACTACCGCAAAATGACTT+CGG | - | chr8_1:86547761-86547780 | Msa1222280:CDS | 40.0% | |
| !! | GTCATACCGAAGTCATTTTG+CGG | + | chr8_1:86547770-86547789 | None:intergenic | 40.0% |
| TGCCAACCAAATAGAATCCT+TGG | + | chr8_1:86547886-86547905 | None:intergenic | 40.0% | |
| TTTCAGCAGTTGATTGGAGA+AGG | - | chr8_1:86547935-86547954 | Msa1222280:intron | 40.0% | |
| CCATTACTACTTCCACTTCT+TGG | + | chr8_1:86547973-86547992 | None:intergenic | 40.0% | |
| CCAAGAAGTGGAAGTAGTAA+TGG | - | chr8_1:86547970-86547989 | Msa1222280:intron | 40.0% | |
| AAATAATCTGCAGCTCCAAG+AGG | + | chr8_1:86548173-86548192 | None:intergenic | 40.0% | |
| ! | CTTGGAGCTGCAGATTATTT+TGG | - | chr8_1:86548173-86548192 | Msa1222280:intron | 40.0% |
| TCTCATGCAAAATGCAAACG+AGG | - | chr8_1:86548229-86548248 | Msa1222280:intron | 40.0% | |
| CTCATGCAAAATGCAAACGA+GGG | - | chr8_1:86548230-86548249 | Msa1222280:intron | 40.0% | |
| !! | TTGATGGCATCCCGATTTTT+GGG | - | chr8_1:86548462-86548481 | Msa1222280:intron | 40.0% |
| GTAATAAAGCAGCTGCACAT+AGG | - | chr8_1:86548489-86548508 | Msa1222280:intron | 40.0% | |
| ! | TGCACATAGGTTTGTCACTT+TGG | - | chr8_1:86548502-86548521 | Msa1222280:intron | 40.0% |
| !! | ACATAGGTTTGTCACTTTGG+TGG | - | chr8_1:86548505-86548524 | Msa1222280:intron | 40.0% |
| ! | CCAATGATGCCTTATTGAAG+TGG | + | chr8_1:86548755-86548774 | None:intergenic | 40.0% |
| ! | CCACTTCAATAAGGCATCAT+TGG | - | chr8_1:86548752-86548771 | Msa1222280:CDS | 40.0% |
| ! | TCAATAAGGCATCATTGGGA+CGG | - | chr8_1:86548757-86548776 | Msa1222280:CDS | 40.0% |
| CAATATCCGAGGCTAAACAA+AGG | - | chr8_1:86548922-86548941 | Msa1222280:CDS | 40.0% | |
| ! | TGAACAAACTCTAGAGGTTG+AGG | - | chr8_1:86549106-86549125 | Msa1222280:intron | 40.0% |
| GATCAACAGCAGAGAATACT+TGG | - | chr8_1:86549271-86549290 | Msa1222280:intron | 40.0% | |
| TGTCCTTGAAGCTTGAAGAT+AGG | - | chr8_1:86549337-86549356 | Msa1222280:five_prime_UTR | 40.0% | |
| GCATACATAGGGAGTGAAAA+TGG | - | chr8_1:86549404-86549423 | Msa1222280:five_prime_UTR | 40.0% | |
| TGTGCAAGTGCCAAATCTAA+CGG | + | chr8_1:86549534-86549553 | None:intergenic | 40.0% | |
| TTTGGCACTTGCACAAAAAG+CGG | - | chr8_1:86549539-86549558 | Msa1222280:five_prime_UTR | 40.0% | |
| ATCAGCATCTTCCCTCTATC+TGG | - | chr8_1:86544974-86544993 | Msa1222280:three_prime_UTR | 45.0% | |
| GCTGTGAAGATCACAAATGG+AGG | - | chr8_1:86545927-86545946 | Msa1222280:intron | 45.0% | |
| CTTCGTTCATACTCGACAAG+AGG | + | chr8_1:86546081-86546100 | None:intergenic | 45.0% | |
| GGTAGATGGTGATAGTTGTC+AGG | - | chr8_1:86546119-86546138 | Msa1222280:intron | 45.0% | |
| GCGATCCAATTGGCATTCAT+CGG | + | chr8_1:86546379-86546398 | None:intergenic | 45.0% | |
| TTCACATCATGTTGAGGCTC+TGG | - | chr8_1:86546488-86546507 | Msa1222280:CDS | 45.0% | |
| ! | CCTTTTACAGGTGAATGCGA+AGG | + | chr8_1:86546578-86546597 | None:intergenic | 45.0% |
| CCTTCGCATTCACCTGTAAA+AGG | - | chr8_1:86546575-86546594 | Msa1222280:intron | 45.0% | |
| CACTGGCAAAACTATGCTGA+TGG | - | chr8_1:86546622-86546641 | Msa1222280:intron | 45.0% | |
| TTCTTCCAATTTGAGGGCCT+GGG | + | chr8_1:86546865-86546884 | None:intergenic | 45.0% | |
| TTTCTTCCAATTTGAGGGCC+TGG | + | chr8_1:86546866-86546885 | None:intergenic | 45.0% | |
| ! | TGTGTCCTTGTAGAAGCACA+AGG | - | chr8_1:86547180-86547199 | Msa1222280:intron | 45.0% |
| ! | GTGTCCTTGTAGAAGCACAA+GGG | - | chr8_1:86547181-86547200 | Msa1222280:intron | 45.0% |
| TGTCTCAGCCTCTATACAAC+AGG | - | chr8_1:86547452-86547471 | Msa1222280:CDS | 45.0% | |
| ! | ATCTGGAGCACGATTTGAAG+TGG | + | chr8_1:86547557-86547576 | None:intergenic | 45.0% |
| TGCTAATTTGGACTGTAGGG+TGG | - | chr8_1:86547860-86547879 | Msa1222280:intron | 45.0% | |
| GGCCAAGGATTCTATTTGGT+TGG | - | chr8_1:86547881-86547900 | Msa1222280:intron | 45.0% | |
| TTGGTTGGCAGTGATTCATC+TGG | - | chr8_1:86547896-86547915 | Msa1222280:intron | 45.0% | |
| ! | TTTTCTTCATCAGGTCCCGT+TGG | - | chr8_1:86548100-86548119 | Msa1222280:CDS | 45.0% |
| TTTCTTCATCAGGTCCCGTT+GGG | - | chr8_1:86548101-86548120 | Msa1222280:CDS | 45.0% | |
| ! | GAGCTTTGTGACAAACCTCT+TGG | - | chr8_1:86548155-86548174 | Msa1222280:intron | 45.0% |
| ! | GCAAACGAGGGTTTCCATTT+TGG | - | chr8_1:86548242-86548261 | Msa1222280:intron | 45.0% |
| !! | CTTGATGGCATCCCGATTTT+TGG | - | chr8_1:86548461-86548480 | Msa1222280:intron | 45.0% |
| CAAAAGACCGCACCATTAGT+AGG | - | chr8_1:86549018-86549037 | Msa1222280:intron | 45.0% | |
| CAAATCTAACGGTCTGCAGA+TGG | + | chr8_1:86549523-86549542 | None:intergenic | 45.0% | |
| CATCTGCAGACCGTTAGATT+TGG | - | chr8_1:86549521-86549540 | Msa1222280:five_prime_UTR | 45.0% | |
| !!! | TCTTTTTATTATTTAATTTT+CGG | - | chr8_1:86545560-86545579 | Msa1222280:intron | 5.0% |
| GCATGCCGATGAATGCCAAT+TGG | - | chr8_1:86546371-86546390 | Msa1222280:intron | 50.0% | |
| TTTACAGACACGGGTGGCTT+TGG | - | chr8_1:86546534-86546553 | Msa1222280:CDS | 50.0% | |
| CTTTATGGAGGAGTAGGCAC+TGG | - | chr8_1:86546605-86546624 | Msa1222280:intron | 50.0% | |
| TCTTCCAATTTGAGGGCCTG+GGG | + | chr8_1:86546864-86546883 | None:intergenic | 50.0% | |
| CAACATCCAGTGGATCTGAC+AGG | + | chr8_1:86547207-86547226 | None:intergenic | 50.0% | |
| GATCCACTGGATGTTGTTGC+AGG | - | chr8_1:86547211-86547230 | Msa1222280:intron | 50.0% | |
| TCTCCTGCAACAACATCCAG+TGG | + | chr8_1:86547217-86547236 | None:intergenic | 50.0% | |
| !! | TATATGAGGGTGGACTGCAG+AGG | - | chr8_1:86547581-86547600 | Msa1222280:intron | 50.0% |
| !! | ATATGAGGGTGGACTGCAGA+GGG | - | chr8_1:86547582-86547601 | Msa1222280:intron | 50.0% |
| GGGTGGCCAAGGATTCTATT+TGG | - | chr8_1:86547877-86547896 | Msa1222280:intron | 50.0% | |
| ACTTCCACTTCTTGGGGAGT+AGG | + | chr8_1:86547965-86547984 | None:intergenic | 50.0% | |
| CACATCCATTAGCTCCCAAC+GGG | + | chr8_1:86548118-86548137 | None:intergenic | 50.0% | |
| GCACATCCATTAGCTCCCAA+CGG | + | chr8_1:86548119-86548138 | None:intergenic | 50.0% | |
| GGAGTGAAAATGGGGTCAAG+TGG | - | chr8_1:86549414-86549433 | Msa1222280:five_prime_UTR | 50.0% | |
| TCATCCCCAGGCCCTCAAAT+TGG | - | chr8_1:86546857-86546876 | Msa1222280:intron | 55.0% | |
| CAGGCCCTTGTGCTTCTACA+AGG | + | chr8_1:86547188-86547207 | None:intergenic | 55.0% | |
| TTTGGACTGTAGGGTGGCCA+AGG | - | chr8_1:86547866-86547885 | Msa1222280:intron | 55.0% | |
| CACACCTACTCCCCAAGAAG+TGG | - | chr8_1:86547958-86547977 | Msa1222280:intron | 55.0% | |
| ! | GGGTGCCCTTTGTTTAGCCT+CGG | + | chr8_1:86548931-86548950 | None:intergenic | 55.0% |
| !! | AGGCTAAACAAAGGGCACCC+AGG | - | chr8_1:86548931-86548950 | Msa1222280:CDS | 55.0% |
| CTCGATCTCGAAGAGGTCCT+GGG | + | chr8_1:86548951-86548970 | None:intergenic | 55.0% | |
| TCTCGATCTCGAAGAGGTCC+TGG | + | chr8_1:86548952-86548971 | None:intergenic | 55.0% | |
| CAAGGGCCTGTCAGATCCAC+TGG | - | chr8_1:86547198-86547217 | Msa1222280:intron | 60.0% | |
| CAGGTCCCGTTGGGAGCTAA+TGG | - | chr8_1:86548110-86548129 | Msa1222280:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 86544958 | 86549715 | 86544958 | ID=Msa1222280;Name=Msa1222280 |
| chr8_1 | mRNA | 86544958 | 86549715 | 86544958 | ID=Msa1222280-mRNA-1;Parent=Msa1222280;Name=Msa1222280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=441|1|1|1|0.92|0.86|15|363|500 |
| chr8_1 | exon | 86544958 | 86545411 | 86544958 | ID=Msa1222280-mRNA-1:exon:31136;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86545634 | 86545827 | 86545634 | ID=Msa1222280-mRNA-1:exon:31135;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86546144 | 86546232 | 86546144 | ID=Msa1222280-mRNA-1:exon:31134;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86546470 | 86546560 | 86546470 | ID=Msa1222280-mRNA-1:exon:31133;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86546667 | 86546795 | 86546667 | ID=Msa1222280-mRNA-1:exon:31132;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86546891 | 86546947 | 86546891 | ID=Msa1222280-mRNA-1:exon:31131;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86547037 | 86547129 | 86547037 | ID=Msa1222280-mRNA-1:exon:31130;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86547240 | 86547305 | 86547240 | ID=Msa1222280-mRNA-1:exon:31129;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86547394 | 86547480 | 86547394 | ID=Msa1222280-mRNA-1:exon:31128;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86547737 | 86547806 | 86547737 | ID=Msa1222280-mRNA-1:exon:31127;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86548010 | 86548132 | 86548010 | ID=Msa1222280-mRNA-1:exon:31126;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86548255 | 86548349 | 86548255 | ID=Msa1222280-mRNA-1:exon:31125;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86548533 | 86548612 | 86548533 | ID=Msa1222280-mRNA-1:exon:31124;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86548725 | 86549023 | 86548725 | ID=Msa1222280-mRNA-1:exon:31123;Parent=Msa1222280-mRNA-1 |
| chr8_1 | exon | 86549336 | 86549715 | 86549336 | ID=Msa1222280-mRNA-1:exon:31122;Parent=Msa1222280-mRNA-1 |
| chr8_1 | five_prime_UTR | 86549336 | 86549715 | 86549336 | ID=Msa1222280-mRNA-1:five_prime_utr;Parent=Msa1222280-mRNA-1 |
| chr8_1 | five_prime_UTR | 86548963 | 86549023 | 86548963 | ID=Msa1222280-mRNA-1:five_prime_utr;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86548725 | 86548962 | 86548725 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86548533 | 86548612 | 86548533 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86548255 | 86548349 | 86548255 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86548010 | 86548132 | 86548010 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86547737 | 86547806 | 86547737 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86547394 | 86547480 | 86547394 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86547240 | 86547305 | 86547240 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86547037 | 86547129 | 86547037 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86546891 | 86546947 | 86546891 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86546667 | 86546795 | 86546667 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86546470 | 86546560 | 86546470 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86546144 | 86546232 | 86546144 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86545634 | 86545827 | 86545634 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | CDS | 86545321 | 86545411 | 86545321 | ID=Msa1222280-mRNA-1:cds;Parent=Msa1222280-mRNA-1 |
| chr8_1 | three_prime_UTR | 86544958 | 86545320 | 86544958 | ID=Msa1222280-mRNA-1:three_prime_utr;Parent=Msa1222280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
