Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881160 | XP_013458571.1 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881160 | sp|Q3V384|AFG1L_MOUSE | 40.097 | 414 | 214 | 10 | 85 | 480 | 74 | 471 | 7.37e-83 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881160 | A0A072USG5 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0881160 | 0.858734 | 6.720645e-63 | -8.615850e-47 |
| Msa0011160 | Msa0881160 | 0.813845 | 2.082861e-51 | -8.615850e-47 |
| Msa0029850 | Msa0881160 | 0.802406 | 5.695047e-49 | -8.615850e-47 |
| Msa0038020 | Msa0881160 | 0.802362 | 5.815372e-49 | -8.615850e-47 |
| Msa0051460 | Msa0881160 | 0.816678 | 4.884881e-52 | -8.615850e-47 |
| Msa0058270 | Msa0881160 | 0.809171 | 2.158978e-50 | -8.615850e-47 |
| Msa0076700 | Msa0881160 | 0.805542 | 1.269273e-49 | -8.615850e-47 |
| Msa0085720 | Msa0881160 | 0.827091 | 1.894143e-54 | -8.615850e-47 |
| Msa0622600 | Msa0881160 | 0.999538 | 1.404135e-320 | -8.615850e-47 |
| Msa0624230 | Msa0881160 | 0.800808 | 1.211319e-48 | -8.615850e-47 |
| Msa0716750 | Msa0881160 | 0.812228 | 4.710556e-51 | -8.615850e-47 |
| Msa0773310 | Msa0881160 | 0.806891 | 6.598137e-50 | -8.615850e-47 |
| Msa0810760 | Msa0881160 | 0.818850 | 1.580505e-52 | -8.615850e-47 |
| Msa0818110 | Msa0881160 | 0.836331 | 9.964744e-57 | -8.615850e-47 |
| Msa0132240 | Msa0881160 | 0.813507 | 2.471962e-51 | -8.615850e-47 |
| Msa0143920 | Msa0881160 | 0.802181 | 6.337411e-49 | -8.615850e-47 |
| Msa0169820 | Msa0881160 | 0.816364 | 5.746054e-52 | -8.615850e-47 |
| Msa0175050 | Msa0881160 | 0.825001 | 5.945768e-54 | -8.615850e-47 |
| Msa0183010 | Msa0881160 | -0.804991 | 1.656122e-49 | -8.615850e-47 |
| Msa0438050 | Msa0881160 | 0.816520 | 5.301647e-52 | -8.615850e-47 |
| Msa0467740 | Msa0881160 | -0.800838 | 1.194231e-48 | -8.615850e-47 |
| Msa0278900 | Msa0881160 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
| Msa0514130 | Msa0881160 | -0.800729 | 1.257343e-48 | -8.615850e-47 |
| Msa0527980 | Msa0881160 | -0.809319 | 2.006264e-50 | -8.615850e-47 |
| Msa0532810 | Msa0881160 | -0.806610 | 7.565011e-50 | -8.615850e-47 |
| Msa0881160 | Msa0881210 | -0.808117 | 3.626104e-50 | -8.615850e-47 |
| Msa0881160 | Msa0968150 | 0.809682 | 1.676910e-50 | -8.615850e-47 |
| Msa0881160 | Msa1021510 | 0.805195 | 1.501075e-49 | -8.615850e-47 |
| Msa0881160 | Msa1174310 | 0.816660 | 4.932746e-52 | -8.615850e-47 |
| Msa0881160 | Msa1205390 | 0.817147 | 3.834202e-52 | -8.615850e-47 |
| Msa0881160 | Msa1222280 | 0.975079 | 2.671064e-139 | -8.615850e-47 |
| Msa0881160 | Msa1225730 | -0.809146 | 2.185977e-50 | -8.615850e-47 |
| Msa0881160 | Msa1229610 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
| Msa0881160 | Msa1235400 | 0.824379 | 8.334519e-54 | -8.615850e-47 |
| Msa0881160 | Msa1244930 | 0.819016 | 1.448835e-52 | -8.615850e-47 |
| Msa0881160 | Msa1250310 | 0.832641 | 8.419234e-56 | -8.615850e-47 |
| Msa0881160 | Msa1264770 | 0.921842 | 2.127796e-88 | -8.615850e-47 |
| Msa0881160 | Msa1264860 | -0.852749 | 3.762621e-61 | -8.615850e-47 |
| Msa0881160 | Msa1276510 | 0.819627 | 1.051697e-52 | -8.615850e-47 |
| Msa0881160 | Msa1297310 | 0.817041 | 4.049967e-52 | -8.615850e-47 |
| Msa0881160 | Msa1310220 | 0.827647 | 1.393737e-54 | -8.615850e-47 |
| Msa0881160 | Msa1314770 | 0.831234 | 1.873681e-55 | -8.615850e-47 |
| Msa0881160 | Msa1373350 | 0.821612 | 3.681090e-53 | -8.615850e-47 |
| Msa0881160 | Msa1378230 | 0.800559 | 1.361855e-48 | -8.615850e-47 |
| Msa0881160 | Msa1385020 | 0.817597 | 3.037057e-52 | -8.615850e-47 |
| Msa0881160 | Msa1404240 | -0.807986 | 3.866550e-50 | -8.615850e-47 |
| Msa0881160 | Msa1407650 | 0.847903 | 8.613252e-60 | -8.615850e-47 |
| Msa0881160 | Msa1463650 | -0.839699 | 1.355484e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881160 | MtrunA17_Chr4g0073421 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Msa0881160 | MtrunA17_Chr1g0149221 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 3.52e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881160 | AT4G30490.1 | 72.685 | 432 | 107 | 3 | 67 | 487 | 63 | 494 | 0.0 | 663 |
| Msa0881160 | AT4G28070.2 | 73.923 | 418 | 105 | 2 | 77 | 490 | 53 | 470 | 0.0 | 649 |
| Msa0881160 | AT4G28070.1 | 71.770 | 418 | 105 | 3 | 77 | 490 | 53 | 461 | 0.0 | 623 |
| Msa0881160 | AT2G25530.1 | 30.732 | 410 | 209 | 12 | 148 | 482 | 233 | 642 | 9.92e-46 | 169 |
| Msa0881160 | AT2G25530.2 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.27e-37 | 145 |
Find 120 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCATTTCCTCATTTC+TGG | 0.034647 | 6_1:+28144934 | Msa0881160:five_prime_UTR |
| GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 6_1:+28146257 | Msa0881160:CDS |
| CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 6_1:+28147849 | Msa0881160:CDS |
| CACTCCATTGTACATTATTT+TGG | 0.164150 | 6_1:-28149286 | None:intergenic |
| CATTACTACTTCCACTTCTT+GGG | 0.228752 | 6_1:-28147636 | None:intergenic |
| GTGACATGTCATGTTGGTTT+TGG | 0.235040 | 6_1:-28144750 | None:intergenic |
| CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 6_1:+28146242 | Msa0881160:CDS |
| CCATTACTACTTCCACTTCT+TGG | 0.244604 | 6_1:-28147637 | None:intergenic |
| CTAGTTAGTATCATAGTTAT+TGG | 0.246189 | 6_1:+28149256 | Msa0881160:three_prime_UTR |
| CCTTTCATTTCCTCATTTCT+GGG | 0.272586 | 6_1:+28144935 | Msa0881160:five_prime_UTR |
| CCACCCTCATATAGATTATC+TGG | 0.285514 | 6_1:-28147238 | None:intergenic |
| AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 6_1:-28147814 | None:intergenic |
| GCATACATAGGGAGTGAAAA+TGG | 0.307071 | 6_1:+28149080 | Msa0881160:three_prime_UTR |
| TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 6_1:+28148122 | Msa0881160:CDS |
| ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 6_1:+28146925 | Msa0881160:CDS |
| AAATATCCTATATACCTTAC+AGG | 0.319411 | 6_1:-28146076 | None:intergenic |
| TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 6_1:-28148625 | None:intergenic |
| ATCTTATCATCCATCATTCC+AGG | 0.334047 | 6_1:+28144982 | Msa0881160:five_prime_UTR |
| TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 6_1:+28146524 | Msa0881160:intron |
| TGTAACACAAACAACAATAT+TGG | 0.349539 | 6_1:+28149124 | Msa0881160:three_prime_UTR |
| GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 6_1:+28147544 | Msa0881160:intron |
| ATCAGCATCTTCCCTCTATC+TGG | 0.354219 | 6_1:+28144640 | Msa0881160:five_prime_UTR |
| CAAAACAGCAATATTGATAT+TGG | 0.355240 | 6_1:-28144850 | None:intergenic |
| TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 6_1:-28146594 | None:intergenic |
| AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 6_1:-28149016 | None:intergenic |
| TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 6_1:+28146201 | Msa0881160:intron |
| TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 6_1:+28147563 | Msa0881160:CDS |
| AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 6_1:+28145763 | Msa0881160:CDS |
| CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 6_1:-28145553 | None:intergenic |
| CATCTGCAGACCGTTAGATT+TGG | 0.396173 | 6_1:+28149202 | Msa0881160:three_prime_UTR |
| TCTTGCTAAGTGCTTATTGT+TGG | 0.400252 | 6_1:+28149338 | Msa0881160:three_prime_UTR |
| TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 6_1:+28148178 | Msa0881160:CDS |
| CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 6_1:+28147786 | Msa0881160:intron |
| ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 6_1:+28147282 | Msa0881160:CDS |
| TGTCCTTGAAGCTTGAAGAT+AGG | 0.415577 | 6_1:+28149013 | Msa0881160:exon |
| GATCAACAGCAGAGAATACT+TGG | 0.418394 | 6_1:+28148947 | Msa0881160:CDS |
| GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 6_1:+28146878 | Msa0881160:CDS |
| ATGGATGATAAGATAAGAAC+AGG | 0.424664 | 6_1:-28144973 | None:intergenic |
| CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 6_1:+28148666 | Msa0881160:CDS |
| AAAATAAAACATCCAGATAG+AGG | 0.431655 | 6_1:-28144652 | None:intergenic |
| ATCAGCTGAACACAATAATC+TGG | 0.439826 | 6_1:-28148541 | None:intergenic |
| CATACATAGGGAGTGAAAAT+GGG | 0.442649 | 6_1:+28149081 | Msa0881160:three_prime_UTR |
| TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 6_1:+28147777 | Msa0881160:intron |
| TCTGATAAACATGTCTCAAT+TGG | 0.445162 | 6_1:-28145402 | None:intergenic |
| TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 6_1:-28147284 | None:intergenic |
| CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 6_1:+28148694 | Msa0881160:CDS |
| GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 6_1:+28147548 | Msa0881160:CDS |
| GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 6_1:+28147831 | Msa0881160:CDS |
| ATATATATCATACCTACTAA+TGG | 0.455546 | 6_1:-28148706 | None:intergenic |
| TGCTCCAGATAATCTATATG+AGG | 0.460863 | 6_1:+28147234 | Msa0881160:CDS |
| ATTGTTGTTGTAGCATACAT+AGG | 0.466535 | 6_1:+28149068 | Msa0881160:three_prime_UTR |
| CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 6_1:+28147638 | Msa0881160:CDS |
| CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 6_1:+28147637 | Msa0881160:CDS |
| TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 6_1:-28146051 | None:intergenic |
| TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 6_1:-28147550 | None:intergenic |
| CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 6_1:+28146865 | Msa0881160:CDS |
| GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 6_1:+28145770 | Msa0881160:CDS |
| CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 6_1:-28148624 | None:intergenic |
| TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 6_1:-28147822 | None:intergenic |
| GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 6_1:-28148604 | None:intergenic |
| CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 6_1:-28147791 | None:intergenic |
| TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 6_1:+28146266 | Msa0881160:CDS |
| AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 6_1:+28148543 | Msa0881160:CDS |
| TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 6_1:+28147533 | Msa0881160:intron |
| GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 6_1:+28145784 | Msa0881160:CDS |
| AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 6_1:+28147396 | Msa0881160:CDS |
| TTTCAAATAAAAGAAAAGAA+AGG | 0.508882 | 6_1:+28149177 | Msa0881160:three_prime_UTR |
| GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 6_1:+28146036 | Msa0881160:CDS |
| ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 6_1:-28147629 | None:intergenic |
| TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 6_1:+28145755 | Msa0881160:CDS |
| AGAAAACGAACCTGGAATGA+TGG | 0.523555 | 6_1:-28144992 | None:intergenic |
| TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 6_1:+28147602 | Msa0881160:CDS |
| ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 6_1:-28147635 | None:intergenic |
| GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 6_1:-28146041 | None:intergenic |
| GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 6_1:+28145589 | Msa0881160:CDS |
| TTGTTGTTGTAGCATACATA+GGG | 0.543752 | 6_1:+28149069 | Msa0881160:three_prime_UTR |
| ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 6_1:+28148181 | Msa0881160:CDS |
| AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 6_1:+28148599 | Msa0881160:CDS |
| AATTTACCATGAATTCATCA+AGG | 0.550011 | 6_1:-28146931 | None:intergenic |
| ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 6_1:-28147221 | None:intergenic |
| ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 6_1:-28147283 | None:intergenic |
| AGAAGAGAATCCCAGAAATG+AGG | 0.554653 | 6_1:-28144945 | None:intergenic |
| CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 6_1:+28146289 | Msa0881160:CDS |
| AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 6_1:+28146260 | Msa0881160:CDS |
| TGTGCAAGTGCCAAATCTAA+CGG | 0.557812 | 6_1:-28149212 | None:intergenic |
| GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 6_1:+28145719 | Msa0881160:intron |
| GGAGTGAAAATGGGGTCAAG+TGG | 0.570176 | 6_1:+28149090 | Msa0881160:three_prime_UTR |
| CAAATCTAACGGTCTGCAGA+TGG | 0.575054 | 6_1:-28149201 | None:intergenic |
| TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 6_1:-28145563 | None:intergenic |
| TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 6_1:+28147074 | Msa0881160:CDS |
| CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 6_1:+28146272 | Msa0881160:CDS |
| TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 6_1:+28148667 | Msa0881160:CDS |
| AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 6_1:+28148983 | Msa0881160:CDS |
| CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 6_1:-28145743 | None:intergenic |
| CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 6_1:+28147625 | Msa0881160:CDS |
| ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 6_1:-28145569 | None:intergenic |
| ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 6_1:+28147249 | Msa0881160:CDS |
| GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 6_1:+28148165 | Msa0881160:CDS |
| CCCAGAAATGAGGAAATGAA+AGG | 0.592333 | 6_1:-28144935 | None:intergenic |
| GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 6_1:-28147048 | None:intergenic |
| AAATAAAACATCCAGATAGA+GGG | 0.600644 | 6_1:-28144651 | None:intergenic |
| TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 6_1:+28146847 | Msa0881160:intron |
| TTTGAGTTGGACATTTGACT+CGG | 0.602275 | 6_1:-28144709 | None:intergenic |
| CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 6_1:-28146871 | None:intergenic |
| TGACTACCGCAAAATGACTT+CGG | 0.612203 | 6_1:+28147428 | Msa0881160:CDS |
| AGAACCAAAATAATGTACAA+TGG | 0.615266 | 6_1:+28149282 | Msa0881160:three_prime_UTR |
| TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 6_1:-28146881 | None:intergenic |
| GATATTGTGACATGTCATGT+TGG | 0.618845 | 6_1:-28144756 | None:intergenic |
| GCTCCAGATAATCTATATGA+GGG | 0.631147 | 6_1:+28147235 | Msa0881160:CDS |
| AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 6_1:-28147846 | None:intergenic |
| CCAGATAATCTATATGAGGG+TGG | 0.640752 | 6_1:+28147238 | Msa0881160:CDS |
| GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 6_1:-28147792 | None:intergenic |
| CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 6_1:+28148598 | Msa0881160:CDS |
| TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 6_1:+28147248 | Msa0881160:CDS |
| ATACATAGGGAGTGAAAATG+GGG | 0.651485 | 6_1:+28149082 | Msa0881160:three_prime_UTR |
| TATCATACCTACTAATGGTG+CGG | 0.657100 | 6_1:-28148701 | None:intergenic |
| AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 6_1:+28148607 | Msa0881160:CDS |
| GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 6_1:+28146848 | Msa0881160:intron |
| TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 6_1:-28145549 | None:intergenic |
| GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 6_1:+28145592 | Msa0881160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCTTTTTATTATTTAATTTT+CGG | + | chr6_1:28145226-28145245 | Msa0881160:intron | 10.0% |
| !!! | TTTGAACATTAATTAATTTT+GGG | + | chr6_1:28146740-28146759 | Msa0881160:intron | 10.0% |
| !! | CCGAAAATTAAATAATAAAA+AGG | - | chr6_1:28145229-28145248 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTACAGACA+CGG | + | chr6_1:28146191-28146210 | Msa0881160:intron | 15.0% |
| !!! | CTTTGAACATTAATTAATTT+TGG | + | chr6_1:28146739-28146758 | Msa0881160:intron | 15.0% |
| !!! | GCTTTAAATATTTTTATAGT+TGG | + | chr6_1:28147308-28147327 | Msa0881160:intron | 15.0% |
| !!! | TATTTGTTTTTATGCTAATT+TGG | + | chr6_1:28147515-28147534 | Msa0881160:intron | 15.0% |
| !! | ATTAATTTAATGTTCCAAAA+TGG | - | chr6_1:28147935-28147954 | None:intergenic | 15.0% |
| !!! | ATCTTTAAAATTAGAATTTC+AGG | - | chr6_1:28148385-28148404 | None:intergenic | 15.0% |
| !!! | AAAAATTGTACAATTAGTTT+TGG | + | chr6_1:28148736-28148755 | Msa0881160:intron | 15.0% |
| !!! | TTGGTTTTTATTCATAAAAT+AGG | + | chr6_1:28148837-28148856 | Msa0881160:intron | 15.0% |
| !!! | TGGTTTTTATTCATAAAATA+GGG | + | chr6_1:28148838-28148857 | Msa0881160:intron | 15.0% |
| !! | TTTCAAATAAAAGAAAAGAA+AGG | + | chr6_1:28149177-28149196 | Msa0881160:three_prime_UTR | 15.0% |
| !!! | TTATTTTTGTAATTGTAACG+TGG | + | chr6_1:28144668-28144687 | Msa0881160:five_prime_UTR | 20.0% |
| !!! | GATGTTTTTTTTTTTTGAGT+TGG | - | chr6_1:28144725-28144744 | None:intergenic | 20.0% |
| !!! | ATTTTTGCATGTATTGTAAT+TGG | - | chr6_1:28144883-28144902 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTTTTTTATTGCA+GGG | + | chr6_1:28145294-28145313 | Msa0881160:intron | 20.0% |
| !!! | TTTTCTTATCTGATTTGTAT+TGG | + | chr6_1:28145682-28145701 | Msa0881160:intron | 20.0% |
| !! | AAGAAGGCAAAAAAATAAAT+AGG | - | chr6_1:28145957-28145976 | None:intergenic | 20.0% |
| !! | GTGTCTGTAAAAAAAAAAAA+AGG | - | chr6_1:28146192-28146211 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTACAGACAC+GGG | + | chr6_1:28146192-28146211 | Msa0881160:intron | 20.0% |
| !!! | TAAAGATATAAACCTTTTAC+AGG | - | chr6_1:28146257-28146276 | None:intergenic | 20.0% |
| !! | GTAAAAGGTTTATATCTTTA+TGG | + | chr6_1:28146257-28146276 | Msa0881160:CDS | 20.0% |
| !! | ACAAAATTAAGAAATCAAGA+CGG | - | chr6_1:28146356-28146375 | None:intergenic | 20.0% |
| !! | TATGTAAACTTACTTGTAAT+AGG | - | chr6_1:28146597-28146616 | None:intergenic | 20.0% |
| !! | AAAAAAAGGATACATCTAAA+AGG | - | chr6_1:28146632-28146651 | None:intergenic | 20.0% |
| !! | CCAAAAGAATACATAATTAT+TGG | - | chr6_1:28146684-28146703 | None:intergenic | 20.0% |
| !!! | CCAATAATTATGTATTCTTT+TGG | + | chr6_1:28146681-28146700 | Msa0881160:intron | 20.0% |
| !!! | AATATTTTTATAGTTGGAAG+TGG | + | chr6_1:28147314-28147333 | Msa0881160:intron | 20.0% |
| !! | TTCTTTCATTGTGATAATTT+CGG | + | chr6_1:28147992-28148011 | Msa0881160:intron | 20.0% |
| !!! | TATTAAAATATGAAGTGCTT+GGG | - | chr6_1:28148278-28148297 | None:intergenic | 20.0% |
| !!! | TGGCATTAATTTTATATAGA+GGG | - | chr6_1:28148481-28148500 | None:intergenic | 20.0% |
| !!! | ATGGCATTAATTTTATATAG+AGG | - | chr6_1:28148482-28148501 | None:intergenic | 20.0% |
| !! | ATATATATCATACCTACTAA+TGG | - | chr6_1:28148709-28148728 | None:intergenic | 20.0% |
| !! | TGAATAAAAACCAAACAATT+GGG | - | chr6_1:28148831-28148850 | None:intergenic | 20.0% |
| !! | ATGAATAAAAACCAAACAAT+TGG | - | chr6_1:28148832-28148851 | None:intergenic | 20.0% |
| ! | AAATAAAACATCCAGATAGA+GGG | - | chr6_1:28144654-28144673 | None:intergenic | 25.0% |
| ! | AAAATAAAACATCCAGATAG+AGG | - | chr6_1:28144655-28144674 | None:intergenic | 25.0% |
| ! | CAAAACAGCAATATTGATAT+TGG | - | chr6_1:28144853-28144872 | None:intergenic | 25.0% |
| !!! | AATGAAAGGTTGAGTTTTTT+GGG | - | chr6_1:28144924-28144943 | None:intergenic | 25.0% |
| !!! | AAATGAAAGGTTGAGTTTTT+TGG | - | chr6_1:28144925-28144944 | None:intergenic | 25.0% |
| ! | CTAACATATTGGAATGAATT+GGG | + | chr6_1:28145110-28145129 | Msa0881160:intron | 25.0% |
| ! | AATGAATTGGGATTTGAAAA+TGG | + | chr6_1:28145122-28145141 | Msa0881160:intron | 25.0% |
| !!! | CGTGTTTTTTTTTTTATTGC+AGG | + | chr6_1:28145293-28145312 | Msa0881160:intron | 25.0% |
| !! | GGATTCTTGAAAAATTTTGT+GGG | + | chr6_1:28145315-28145334 | Msa0881160:five_prime_UTR | 25.0% |
| !! | TGAAATTATTTTCCCTACTT+TGG | + | chr6_1:28145843-28145862 | Msa0881160:intron | 25.0% |
| ! | AAATATCCTATATACCTTAC+AGG | - | chr6_1:28146079-28146098 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTTGAACTTTA+TGG | + | chr6_1:28146122-28146141 | Msa0881160:intron | 25.0% |
| ! | AAAGGTTTATATCTTTATGG+AGG | + | chr6_1:28146260-28146279 | Msa0881160:CDS | 25.0% |
| ! | TTTATGATCAATTGTGAGTT+TGG | + | chr6_1:28146318-28146337 | Msa0881160:intron | 25.0% |
| !! | TTTTGTATTACATGCTATTG+AGG | + | chr6_1:28146370-28146389 | Msa0881160:intron | 25.0% |
| ! | AATTTACCATGAATTCATCA+AGG | - | chr6_1:28146934-28146953 | None:intergenic | 25.0% |
| ! | CATAAAATCATGTTGTATAG+AGG | - | chr6_1:28147130-28147149 | None:intergenic | 25.0% |
| !! | CTCTATACAACATGATTTTA+TGG | + | chr6_1:28147128-28147147 | Msa0881160:intron | 25.0% |
| ! | AGATAATGATTTCATTGTTG+TGG | + | chr6_1:28147959-28147978 | Msa0881160:intron | 25.0% |
| ! | GGAAATCTGTAAAATTATGA+AGG | - | chr6_1:28148041-28148060 | None:intergenic | 25.0% |
| ! | TTTATGGATCTCTCATATAA+TGG | - | chr6_1:28148062-28148081 | None:intergenic | 25.0% |
| !!! | CATTGTGTAACATTGATTTA+TGG | - | chr6_1:28148078-28148097 | None:intergenic | 25.0% |
| ! | TTATTACTAAGCCCAAAAAT+CGG | - | chr6_1:28148152-28148171 | None:intergenic | 25.0% |
| ! | AGAAGACAAAGTTTAAATGT+GGG | - | chr6_1:28148231-28148250 | None:intergenic | 25.0% |
| !! | CTATTAAAATATGAAGTGCT+TGG | - | chr6_1:28148279-28148298 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAGAGATCAAGA+GGG | - | chr6_1:28148572-28148591 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAAAGAGATCAAG+AGG | - | chr6_1:28148573-28148592 | None:intergenic | 25.0% |
| ! | AAAAATAGTAACAATATCCG+AGG | + | chr6_1:28148587-28148606 | Msa0881160:CDS | 25.0% |
| ! | TGATCAGTAATCATTAATCA+TGG | - | chr6_1:28148899-28148918 | None:intergenic | 25.0% |
| ! | TGTAACACAAACAACAATAT+TGG | + | chr6_1:28149124-28149143 | Msa0881160:three_prime_UTR | 25.0% |
| ! | CTAGTTAGTATCATAGTTAT+TGG | + | chr6_1:28149256-28149275 | Msa0881160:three_prime_UTR | 25.0% |
| ! | AGAACCAAAATAATGTACAA+TGG | + | chr6_1:28149282-28149301 | Msa0881160:three_prime_UTR | 25.0% |
| ATGGATGATAAGATAAGAAC+AGG | - | chr6_1:28144976-28144995 | None:intergenic | 30.0% | |
| TTAGGAAGATTGCTGAAAAA+GGG | - | chr6_1:28145094-28145113 | None:intergenic | 30.0% | |
| CCAATTCATTCCAATATGTT+AGG | - | chr6_1:28145112-28145131 | None:intergenic | 30.0% | |
| CCTAACATATTGGAATGAAT+TGG | + | chr6_1:28145109-28145128 | Msa0881160:intron | 30.0% | |
| ! | GGGATTCTTGAAAAATTTTG+TGG | + | chr6_1:28145314-28145333 | Msa0881160:intron | 30.0% |
| TCTGATAAACATGTCTCAAT+TGG | - | chr6_1:28145405-28145424 | None:intergenic | 30.0% | |
| ! | CAACACTTTTCAAAGTAACA+AGG | - | chr6_1:28145469-28145488 | None:intergenic | 30.0% |
| TATGAACGAAGAATTGCTAA+TGG | + | chr6_1:28145755-28145774 | Msa0881160:CDS | 30.0% | |
| AAGAATTGCTAATGGTGAAT+TGG | + | chr6_1:28145763-28145782 | Msa0881160:CDS | 30.0% | |
| !! | TTTTCCCTACTTTGGTTTAT+CGG | + | chr6_1:28145851-28145870 | Msa0881160:intron | 30.0% |
| !!! | TTTTTTGCCTTCTTTTGTTG+AGG | + | chr6_1:28145963-28145982 | Msa0881160:intron | 30.0% |
| GAAAAACCTGTAAGGTATAT+AGG | + | chr6_1:28146070-28146089 | Msa0881160:intron | 30.0% | |
| TTATATCTTTATGGAGGAGT+AGG | + | chr6_1:28146266-28146285 | Msa0881160:CDS | 30.0% | |
| !!! | ATTTTCAAGTCTCAGTGTAA+GGG | + | chr6_1:28146406-28146425 | Msa0881160:intron | 30.0% |
| TTTAACCTCATAAGAACACA+TGG | - | chr6_1:28146464-28146483 | None:intergenic | 30.0% | |
| ! | CTCTTTTTCTTCCAATTTGA+GGG | - | chr6_1:28146538-28146557 | None:intergenic | 30.0% |
| CAAGTAGGGAATAGAAAAAA+AGG | - | chr6_1:28146646-28146665 | None:intergenic | 30.0% | |
| TAATTGACAAACAGAGTATG+AGG | + | chr6_1:28146799-28146818 | Msa0881160:intron | 30.0% | |
| ATTATGCCTTGATGAATTCA+TGG | + | chr6_1:28146925-28146944 | Msa0881160:CDS | 30.0% | |
| CTTCATTTCTTCAATGTGTT+TGG | + | chr6_1:28147176-28147195 | Msa0881160:intron | 30.0% | |
| TACATCAGTATACACATACT+AGG | - | chr6_1:28147372-28147391 | None:intergenic | 30.0% | |
| TAGTATGTGTATACTGATGT+AGG | + | chr6_1:28147371-28147390 | Msa0881160:intron | 30.0% | |
| TTTATGCTAATTTGGACTGT+AGG | + | chr6_1:28147523-28147542 | Msa0881160:intron | 30.0% | |
| TTATGCTAATTTGGACTGTA+GGG | + | chr6_1:28147524-28147543 | Msa0881160:intron | 30.0% | |
| AAAAAGTTTCAGCAGTTGAT+TGG | + | chr6_1:28147596-28147615 | Msa0881160:CDS | 30.0% | |
| AAGCTCTTCAAAAGGAAAAT+AGG | - | chr6_1:28147817-28147836 | None:intergenic | 30.0% | |
| TTTCATACTTTAGCACTTGA+TGG | + | chr6_1:28148122-28148141 | Msa0881160:CDS | 30.0% | |
| TATTACTAAGCCCAAAAATC+GGG | - | chr6_1:28148151-28148170 | None:intergenic | 30.0% | |
| ! | TGGATGTAAGTCCTTTTAAA+TGG | + | chr6_1:28148201-28148220 | Msa0881160:intron | 30.0% |
| GAGAAGACAAAGTTTAAATG+TGG | - | chr6_1:28148232-28148251 | None:intergenic | 30.0% | |
| ACATAATCTCATTCATAGCT+AGG | - | chr6_1:28148322-28148341 | None:intergenic | 30.0% | |
| AAGCTTATTCCACTTCAATA+AGG | + | chr6_1:28148419-28148438 | Msa0881160:intron | 30.0% | |
| TGTTACAAACAAACAAAGCA+TGG | - | chr6_1:28148501-28148520 | None:intergenic | 30.0% | |
| !! | ATGCTTTGTTTGTTTGTAAC+AGG | + | chr6_1:28148500-28148519 | Msa0881160:intron | 30.0% |
| ! | TTTGTGTTGACAATGAACTA+GGG | + | chr6_1:28148667-28148686 | Msa0881160:CDS | 30.0% |
| ATGTAAATTGCCCAATTGTT+TGG | + | chr6_1:28148818-28148837 | Msa0881160:intron | 30.0% | |
| TCATAAAATAGGGCGAAAAA+TGG | + | chr6_1:28148848-28148867 | Msa0881160:intron | 30.0% | |
| ! | ATTGTTGTTGTAGCATACAT+AGG | + | chr6_1:28149068-28149087 | Msa0881160:three_prime_UTR | 30.0% |
| ! | TTGTTGTTGTAGCATACATA+GGG | + | chr6_1:28149069-28149088 | Msa0881160:three_prime_UTR | 30.0% |
| ! | CACTCCATTGTACATTATTT+TGG | - | chr6_1:28149289-28149308 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGACATTTGACT+CGG | - | chr6_1:28144712-28144731 | None:intergenic | 35.0% |
| !!! | TGACATGTCATGTTGGTTTT+GGG | - | chr6_1:28144752-28144771 | None:intergenic | 35.0% |
| GATATTGTGACATGTCATGT+TGG | - | chr6_1:28144759-28144778 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGGAGTGAAAAGA+GGG | - | chr6_1:28144911-28144930 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGGGAGTGAAAAG+AGG | - | chr6_1:28144912-28144931 | None:intergenic | 35.0% |
| ACCTTTCATTTCCTCATTTC+TGG | + | chr6_1:28144934-28144953 | Msa0881160:five_prime_UTR | 35.0% | |
| CCTTTCATTTCCTCATTTCT+GGG | + | chr6_1:28144935-28144954 | Msa0881160:five_prime_UTR | 35.0% | |
| ATCTTATCATCCATCATTCC+AGG | + | chr6_1:28144982-28145001 | Msa0881160:five_prime_UTR | 35.0% | |
| TAATGATGAGAAAACGAACC+TGG | - | chr6_1:28145003-28145022 | None:intergenic | 35.0% | |
| GTTAGGAAGATTGCTGAAAA+AGG | - | chr6_1:28145095-28145114 | None:intergenic | 35.0% | |
| CAGCAATCTTCCTAACATAT+TGG | + | chr6_1:28145099-28145118 | Msa0881160:intron | 35.0% | |
| TGGATGTGGTAATAAATGGA+CGG | - | chr6_1:28145552-28145571 | None:intergenic | 35.0% | |
| CTTGTGGATGTGGTAATAAA+TGG | - | chr6_1:28145556-28145575 | None:intergenic | 35.0% | |
| GTTACAGTAACTAACAGAAG+TGG | + | chr6_1:28145719-28145738 | Msa0881160:intron | 35.0% | |
| ! | TTTCCCTACTTTGGTTTATC+GGG | + | chr6_1:28145852-28145871 | Msa0881160:intron | 35.0% |
| TTTCCCGATAAACCAAAGTA+GGG | - | chr6_1:28145858-28145877 | None:intergenic | 35.0% | |
| ! | TTTTCCCGATAAACCAAAGT+AGG | - | chr6_1:28145859-28145878 | None:intergenic | 35.0% |
| ATCATGCATGCATTTGTTCA+TGG | + | chr6_1:28145898-28145917 | Msa0881160:intron | 35.0% | |
| TTTCAGAATTGCGATCCAAT+TGG | - | chr6_1:28146054-28146073 | None:intergenic | 35.0% | |
| ! | GCAATTCTGAAAAACCTGTA+AGG | + | chr6_1:28146062-28146081 | Msa0881160:CDS | 35.0% |
| ATTTGAACAGACATATCAGC+AGG | - | chr6_1:28146111-28146130 | None:intergenic | 35.0% | |
| ! | TCTGTTTTCACATCATGTTG+AGG | + | chr6_1:28146147-28146166 | Msa0881160:intron | 35.0% |
| !!! | TTTTTTTTTACAGACACGGG+TGG | + | chr6_1:28146195-28146214 | Msa0881160:intron | 35.0% |
| ! | TGCTATTGAGGCAAATTTTG+AGG | + | chr6_1:28146382-28146401 | Msa0881160:intron | 35.0% |
| !!! | CATTTTCAAGTCTCAGTGTA+AGG | + | chr6_1:28146405-28146424 | Msa0881160:intron | 35.0% |
| !!! | TTTTCAAGTCTCAGTGTAAG+GGG | + | chr6_1:28146407-28146426 | Msa0881160:intron | 35.0% |
| ! | AGTGTAAGGGGAATATTTTG+AGG | + | chr6_1:28146419-28146438 | Msa0881160:intron | 35.0% |
| TTATGCCATGTGTTCTTATG+AGG | + | chr6_1:28146456-28146475 | Msa0881160:intron | 35.0% | |
| ! | CCTCTTTTTCTTCCAATTTG+AGG | - | chr6_1:28146539-28146558 | None:intergenic | 35.0% |
| CCTCAAATTGGAAGAAAAAG+AGG | + | chr6_1:28146536-28146555 | Msa0881160:CDS | 35.0% | |
| TTCTATTCCCTACTTGACTT+AGG | + | chr6_1:28146650-28146669 | Msa0881160:intron | 35.0% | |
| TCTATTCCCTACTTGACTTA+GGG | + | chr6_1:28146651-28146670 | Msa0881160:intron | 35.0% | |
| ATTCTTCCCTAAGTCAAGTA+GGG | - | chr6_1:28146660-28146679 | None:intergenic | 35.0% | |
| AATTCTTCCCTAAGTCAAGT+AGG | - | chr6_1:28146661-28146680 | None:intergenic | 35.0% | |
| GCGATTAAGTATCAATGCAT+CGG | - | chr6_1:28147051-28147070 | None:intergenic | 35.0% | |
| TTCAGACATCTATTCAGCAA+AGG | + | chr6_1:28147074-28147093 | Msa0881160:CDS | 35.0% | |
| TGCTCCAGATAATCTATATG+AGG | + | chr6_1:28147234-28147253 | Msa0881160:CDS | 35.0% | |
| GCTCCAGATAATCTATATGA+GGG | + | chr6_1:28147235-28147254 | Msa0881160:CDS | 35.0% | |
| ACCTTCAATGTTGCAATGAA+GGG | - | chr6_1:28147286-28147305 | None:intergenic | 35.0% | |
| TACCTTCAATGTTGCAATGA+AGG | - | chr6_1:28147287-28147306 | None:intergenic | 35.0% | |
| ATTACTACTTCCACTTCTTG+GGG | - | chr6_1:28147638-28147657 | None:intergenic | 35.0% | |
| CATTACTACTTCCACTTCTT+GGG | - | chr6_1:28147639-28147658 | None:intergenic | 35.0% | |
| CAAGAAGTGGAAGTAGTAAT+GGG | + | chr6_1:28147638-28147657 | Msa0881160:CDS | 35.0% | |
| ! | TATTGCTCGTTTTCTTCATC+AGG | + | chr6_1:28147767-28147786 | Msa0881160:intron | 35.0% |
| TTGTCACAAAGCTCTTCAAA+AGG | - | chr6_1:28147825-28147844 | None:intergenic | 35.0% | |
| ATGTGGGCAAACCATTTAAA+AGG | - | chr6_1:28148215-28148234 | None:intergenic | 35.0% | |
| ! | CACTTCAATAAGGCATCATT+GGG | + | chr6_1:28148429-28148448 | Msa0881160:intron | 35.0% |
| AGAGGGTAACTAAAATGCAT+AGG | - | chr6_1:28148464-28148483 | None:intergenic | 35.0% | |
| ATCAGCTGAACACAATAATC+TGG | - | chr6_1:28148544-28148563 | None:intergenic | 35.0% | |
| AGATTATTGTGTTCAGCTGA+TGG | + | chr6_1:28148543-28148562 | Msa0881160:CDS | 35.0% | |
| AATATCCGAGGCTAAACAAA+GGG | + | chr6_1:28148599-28148618 | Msa0881160:CDS | 35.0% | |
| !!! | ATTTTTTCTCGATCTCGAAG+AGG | - | chr6_1:28148634-28148653 | None:intergenic | 35.0% |
| GAGATCGAGAAAAAATGATG+AGG | + | chr6_1:28148638-28148657 | Msa0881160:CDS | 35.0% | |
| ! | CTTTGTGTTGACAATGAACT+AGG | + | chr6_1:28148666-28148685 | Msa0881160:CDS | 35.0% |
| TATCATACCTACTAATGGTG+CGG | - | chr6_1:28148704-28148723 | None:intergenic | 35.0% | |
| AGATCATGAACAAACTCTAG+AGG | + | chr6_1:28148776-28148795 | Msa0881160:intron | 35.0% | |
| AGCAGAAAAGAAAGAAAGAG+AGG | + | chr6_1:28148983-28149002 | Msa0881160:CDS | 35.0% | |
| AATCCTATCTTCAAGCTTCA+AGG | - | chr6_1:28149019-28149038 | None:intergenic | 35.0% | |
| CATACATAGGGAGTGAAAAT+GGG | + | chr6_1:28149081-28149100 | Msa0881160:three_prime_UTR | 35.0% | |
| ATACATAGGGAGTGAAAATG+GGG | + | chr6_1:28149082-28149101 | Msa0881160:three_prime_UTR | 35.0% | |
| TCTTGCTAAGTGCTTATTGT+TGG | + | chr6_1:28149338-28149357 | Msa0881160:three_prime_UTR | 35.0% | |
| !!! | GTGACATGTCATGTTGGTTT+TGG | - | chr6_1:28144753-28144772 | None:intergenic | 40.0% |
| CCCAGAAATGAGGAAATGAA+AGG | - | chr6_1:28144938-28144957 | None:intergenic | 40.0% | |
| AGAAGAGAATCCCAGAAATG+AGG | - | chr6_1:28144948-28144967 | None:intergenic | 40.0% | |
| AGAAAACGAACCTGGAATGA+TGG | - | chr6_1:28144995-28145014 | None:intergenic | 40.0% | |
| TGAGATAGATCTTGTGGATG+TGG | - | chr6_1:28145566-28145585 | None:intergenic | 40.0% | |
| ATCAGCTGAGATAGATCTTG+TGG | - | chr6_1:28145572-28145591 | None:intergenic | 40.0% | |
| GATGCTGTGAAGATCACAAA+TGG | + | chr6_1:28145589-28145608 | Msa0881160:CDS | 40.0% | |
| GCTAATGGTGAATTGGTAGA+TGG | + | chr6_1:28145770-28145789 | Msa0881160:CDS | 40.0% | |
| GTTTATCGGGAAAATGTTGC+TGG | + | chr6_1:28145865-28145884 | Msa0881160:intron | 40.0% | |
| ! | TTGCCTTCTTTTGTTGAGGT+AGG | + | chr6_1:28145967-28145986 | Msa0881160:intron | 40.0% |
| CAACCTACCTCAACAAAAGA+AGG | - | chr6_1:28145973-28145992 | None:intergenic | 40.0% | |
| AATCAAGCATACGATAGAGC+TGG | - | chr6_1:28146500-28146519 | None:intergenic | 40.0% | |
| !!! | GCTTGATTTTTTTCATCCCC+AGG | + | chr6_1:28146512-28146531 | Msa0881160:intron | 40.0% |
| TGTCACAGCTTGAGATTTGT+TGG | + | chr6_1:28147002-28147021 | Msa0881160:intron | 40.0% | |
| !! | GAGATTTGTTGGTCTTCTGT+AGG | + | chr6_1:28147013-28147032 | Msa0881160:intron | 40.0% |
| CCACCCTCATATAGATTATC+TGG | - | chr6_1:28147241-28147260 | None:intergenic | 40.0% | |
| CCAGATAATCTATATGAGGG+TGG | + | chr6_1:28147238-28147257 | Msa0881160:CDS | 40.0% | |
| ACCCTTCATTGCAACATTGA+AGG | + | chr6_1:28147282-28147301 | Msa0881160:CDS | 40.0% | |
| AGATGCATAGCTCATGAGAT+TGG | + | chr6_1:28147396-28147415 | Msa0881160:CDS | 40.0% | |
| TGACTACCGCAAAATGACTT+CGG | + | chr6_1:28147428-28147447 | Msa0881160:CDS | 40.0% | |
| !! | GTCATACCGAAGTCATTTTG+CGG | - | chr6_1:28147437-28147456 | None:intergenic | 40.0% |
| TGCCAACCAAATAGAATCCT+TGG | - | chr6_1:28147553-28147572 | None:intergenic | 40.0% | |
| TTTCAGCAGTTGATTGGAGA+AGG | + | chr6_1:28147602-28147621 | Msa0881160:CDS | 40.0% | |
| CCATTACTACTTCCACTTCT+TGG | - | chr6_1:28147640-28147659 | None:intergenic | 40.0% | |
| CCAAGAAGTGGAAGTAGTAA+TGG | + | chr6_1:28147637-28147656 | Msa0881160:CDS | 40.0% | |
| AAATAATCTGCAGCTCCAAG+AGG | - | chr6_1:28147849-28147868 | None:intergenic | 40.0% | |
| ! | CTTGGAGCTGCAGATTATTT+TGG | + | chr6_1:28147849-28147868 | Msa0881160:CDS | 40.0% |
| TCTCAAGCAAAATGCAAACG+AGG | + | chr6_1:28147905-28147924 | Msa0881160:intron | 40.0% | |
| CTCAAGCAAAATGCAAACGA+GGG | + | chr6_1:28147906-28147925 | Msa0881160:intron | 40.0% | |
| !! | TTGATGGCATCCCGATTTTT+GGG | + | chr6_1:28148138-28148157 | Msa0881160:CDS | 40.0% |
| GTAATAAAGCAGCTGCACAT+AGG | + | chr6_1:28148165-28148184 | Msa0881160:CDS | 40.0% | |
| ! | TGCACATAGGTTTGTCACTT+TGG | + | chr6_1:28148178-28148197 | Msa0881160:CDS | 40.0% |
| !! | ACATAGGTTTGTCACTTTGG+TGG | + | chr6_1:28148181-28148200 | Msa0881160:CDS | 40.0% |
| ! | CCAATGATGCCTTATTGAAG+TGG | - | chr6_1:28148431-28148450 | None:intergenic | 40.0% |
| ! | CCACTTCAATAAGGCATCAT+TGG | + | chr6_1:28148428-28148447 | Msa0881160:intron | 40.0% |
| ! | TCAATAAGGCATCATTGGGA+CGG | + | chr6_1:28148433-28148452 | Msa0881160:intron | 40.0% |
| CAATATCCGAGGCTAAACAA+AGG | + | chr6_1:28148598-28148617 | Msa0881160:CDS | 40.0% | |
| ! | TGAACAAACTCTAGAGGTTG+AGG | + | chr6_1:28148782-28148801 | Msa0881160:intron | 40.0% |
| GATCAACAGCAGAGAATACT+TGG | + | chr6_1:28148947-28148966 | Msa0881160:CDS | 40.0% | |
| TGTCCTTGAAGCTTGAAGAT+AGG | + | chr6_1:28149013-28149032 | Msa0881160:exon | 40.0% | |
| GCATACATAGGGAGTGAAAA+TGG | + | chr6_1:28149080-28149099 | Msa0881160:three_prime_UTR | 40.0% | |
| TGTGCAAGTGCCAAATCTAA+CGG | - | chr6_1:28149215-28149234 | None:intergenic | 40.0% | |
| TTTGGCACTTGCACAAAAAG+CGG | + | chr6_1:28149220-28149239 | Msa0881160:three_prime_UTR | 40.0% | |
| ATCAGCATCTTCCCTCTATC+TGG | + | chr6_1:28144640-28144659 | Msa0881160:five_prime_UTR | 45.0% | |
| GCTGTGAAGATCACAAATGG+AGG | + | chr6_1:28145592-28145611 | Msa0881160:CDS | 45.0% | |
| CTTCGTTCATACTCGACAAG+AGG | - | chr6_1:28145746-28145765 | None:intergenic | 45.0% | |
| GGTAGATGGTGATAGTTGTC+AGG | + | chr6_1:28145784-28145803 | Msa0881160:CDS | 45.0% | |
| GCGATCCAATTGGCATTCAT+CGG | - | chr6_1:28146044-28146063 | None:intergenic | 45.0% | |
| TTCACATCATGTTGAGGCTC+TGG | + | chr6_1:28146153-28146172 | Msa0881160:intron | 45.0% | |
| ! | CCTTTTACAGGTGAATGCGA+AGG | - | chr6_1:28146245-28146264 | None:intergenic | 45.0% |
| CCTTCGCATTCACCTGTAAA+AGG | + | chr6_1:28146242-28146261 | Msa0881160:CDS | 45.0% | |
| CACTGGCAAAACTATGCTGA+TGG | + | chr6_1:28146289-28146308 | Msa0881160:CDS | 45.0% | |
| TTCTTCCAATTTGAGGGCCT+GGG | - | chr6_1:28146532-28146551 | None:intergenic | 45.0% | |
| TTTCTTCCAATTTGAGGGCC+TGG | - | chr6_1:28146533-28146552 | None:intergenic | 45.0% | |
| ! | TGTGTCCTTGTAGAAGCACA+AGG | + | chr6_1:28146847-28146866 | Msa0881160:intron | 45.0% |
| ! | GTGTCCTTGTAGAAGCACAA+GGG | + | chr6_1:28146848-28146867 | Msa0881160:intron | 45.0% |
| ! | ATCTGGAGCACGATTTGAAG+TGG | - | chr6_1:28147224-28147243 | None:intergenic | 45.0% |
| TGCTAATTTGGACTGTAGGG+TGG | + | chr6_1:28147527-28147546 | Msa0881160:intron | 45.0% | |
| GGCCAAGGATTCTATTTGGT+TGG | + | chr6_1:28147548-28147567 | Msa0881160:CDS | 45.0% | |
| TTGGTTGGCAGTGATTCATC+TGG | + | chr6_1:28147563-28147582 | Msa0881160:CDS | 45.0% | |
| ! | TTTTCTTCATCAGGTCCCGT+TGG | + | chr6_1:28147776-28147795 | Msa0881160:intron | 45.0% |
| TTTCTTCATCAGGTCCCGTT+GGG | + | chr6_1:28147777-28147796 | Msa0881160:intron | 45.0% | |
| ! | GAGCTTTGTGACAAACCTCT+TGG | + | chr6_1:28147831-28147850 | Msa0881160:CDS | 45.0% |
| ! | GCAAACGAGGGTTTCCATTT+TGG | + | chr6_1:28147918-28147937 | Msa0881160:intron | 45.0% |
| !! | CTTGATGGCATCCCGATTTT+TGG | + | chr6_1:28148137-28148156 | Msa0881160:CDS | 45.0% |
| CAAAAGACCGCACCATTAGT+AGG | + | chr6_1:28148694-28148713 | Msa0881160:CDS | 45.0% | |
| CAAATCTAACGGTCTGCAGA+TGG | - | chr6_1:28149204-28149223 | None:intergenic | 45.0% | |
| CATCTGCAGACCGTTAGATT+TGG | + | chr6_1:28149202-28149221 | Msa0881160:three_prime_UTR | 45.0% | |
| GCATGCCGATGAATGCCAAT+TGG | + | chr6_1:28146036-28146055 | Msa0881160:CDS | 50.0% | |
| TTTACAGACACGGGTGGCTT+TGG | + | chr6_1:28146201-28146220 | Msa0881160:intron | 50.0% | |
| CTTTATGGAGGAGTAGGCAC+TGG | + | chr6_1:28146272-28146291 | Msa0881160:CDS | 50.0% | |
| TCTTCCAATTTGAGGGCCTG+GGG | - | chr6_1:28146531-28146550 | None:intergenic | 50.0% | |
| CAACATCCAGTGGATCTGAC+AGG | - | chr6_1:28146874-28146893 | None:intergenic | 50.0% | |
| GATCCACTGGATGTTGTTGC+AGG | + | chr6_1:28146878-28146897 | Msa0881160:CDS | 50.0% | |
| TCTCCTGCAACAACATCCAG+TGG | - | chr6_1:28146884-28146903 | None:intergenic | 50.0% | |
| !! | TATATGAGGGTGGACTGCAG+AGG | + | chr6_1:28147248-28147267 | Msa0881160:CDS | 50.0% |
| !! | ATATGAGGGTGGACTGCAGA+GGG | + | chr6_1:28147249-28147268 | Msa0881160:CDS | 50.0% |
| GGGTGGCCAAGGATTCTATT+TGG | + | chr6_1:28147544-28147563 | Msa0881160:intron | 50.0% | |
| ACTTCCACTTCTTGGGGAGT+AGG | - | chr6_1:28147632-28147651 | None:intergenic | 50.0% | |
| CACATCCATTAGCTCCCAAC+GGG | - | chr6_1:28147794-28147813 | None:intergenic | 50.0% | |
| GCACATCCATTAGCTCCCAA+CGG | - | chr6_1:28147795-28147814 | None:intergenic | 50.0% | |
| GGAGTGAAAATGGGGTCAAG+TGG | + | chr6_1:28149090-28149109 | Msa0881160:three_prime_UTR | 50.0% | |
| TCATCCCCAGGCCCTCAAAT+TGG | + | chr6_1:28146524-28146543 | Msa0881160:intron | 55.0% | |
| CAGGCCCTTGTGCTTCTACA+AGG | - | chr6_1:28146855-28146874 | None:intergenic | 55.0% | |
| TTTGGACTGTAGGGTGGCCA+AGG | + | chr6_1:28147533-28147552 | Msa0881160:intron | 55.0% | |
| CACACCTACTCCCCAAGAAG+TGG | + | chr6_1:28147625-28147644 | Msa0881160:CDS | 55.0% | |
| ! | GGGTGCCCTTTGTTTAGCCT+CGG | - | chr6_1:28148607-28148626 | None:intergenic | 55.0% |
| !! | AGGCTAAACAAAGGGCACCC+AGG | + | chr6_1:28148607-28148626 | Msa0881160:CDS | 55.0% |
| CTCGATCTCGAAGAGGTCCT+GGG | - | chr6_1:28148627-28148646 | None:intergenic | 55.0% | |
| TCTCGATCTCGAAGAGGTCC+TGG | - | chr6_1:28148628-28148647 | None:intergenic | 55.0% | |
| CAAGGGCCTGTCAGATCCAC+TGG | + | chr6_1:28146865-28146884 | Msa0881160:CDS | 60.0% | |
| CAGGTCCCGTTGGGAGCTAA+TGG | + | chr6_1:28147786-28147805 | Msa0881160:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 28144628 | 28149401 | 28144628 | ID=Msa0881160;Name=Msa0881160 |
| chr6_1 | mRNA | 28144628 | 28149401 | 28144628 | ID=Msa0881160-mRNA-1;Parent=Msa0881160;Name=Msa0881160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=437|1|1|1|0.92|0.86|15|373|500 |
| chr6_1 | exon | 28144628 | 28145003 | 28144628 | ID=Msa0881160-mRNA-1:exon:7009;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28145315 | 28145613 | 28145315 | ID=Msa0881160-mRNA-1:exon:7010;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28145726 | 28145805 | 28145726 | ID=Msa0881160-mRNA-1:exon:7011;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28145989 | 28146083 | 28145989 | ID=Msa0881160-mRNA-1:exon:7012;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28146208 | 28146330 | 28146208 | ID=Msa0881160-mRNA-1:exon:7013;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28146534 | 28146603 | 28146534 | ID=Msa0881160-mRNA-1:exon:7014;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28146860 | 28146946 | 28146860 | ID=Msa0881160-mRNA-1:exon:7015;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28147035 | 28147100 | 28147035 | ID=Msa0881160-mRNA-1:exon:7016;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28147211 | 28147303 | 28147211 | ID=Msa0881160-mRNA-1:exon:7017;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28147393 | 28147449 | 28147393 | ID=Msa0881160-mRNA-1:exon:7018;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28147545 | 28147673 | 28147545 | ID=Msa0881160-mRNA-1:exon:7019;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28147789 | 28147879 | 28147789 | ID=Msa0881160-mRNA-1:exon:7020;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28148117 | 28148205 | 28148117 | ID=Msa0881160-mRNA-1:exon:7021;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28148522 | 28148715 | 28148522 | ID=Msa0881160-mRNA-1:exon:7022;Parent=Msa0881160-mRNA-1 |
| chr6_1 | exon | 28148938 | 28149401 | 28148938 | ID=Msa0881160-mRNA-1:exon:7023;Parent=Msa0881160-mRNA-1 |
| chr6_1 | five_prime_UTR | 28144628 | 28145003 | 28144628 | ID=Msa0881160-mRNA-1:five_prime_utr;Parent=Msa0881160-mRNA-1 |
| chr6_1 | five_prime_UTR | 28145315 | 28145375 | 28145315 | ID=Msa0881160-mRNA-1:five_prime_utr;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28145376 | 28145613 | 28145376 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28145726 | 28145805 | 28145726 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28145989 | 28146083 | 28145989 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28146208 | 28146330 | 28146208 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28146534 | 28146603 | 28146534 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28146860 | 28146946 | 28146860 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28147035 | 28147100 | 28147035 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28147211 | 28147303 | 28147211 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28147393 | 28147449 | 28147393 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28147545 | 28147673 | 28147545 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28147789 | 28147879 | 28147789 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28148117 | 28148205 | 28148117 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28148522 | 28148715 | 28148522 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | CDS | 28148938 | 28149028 | 28148938 | ID=Msa0881160-mRNA-1:cds;Parent=Msa0881160-mRNA-1 |
| chr6_1 | three_prime_UTR | 28149029 | 28149401 | 28149029 | ID=Msa0881160-mRNA-1:three_prime_utr;Parent=Msa0881160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
