Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622600 | XP_013458571.1 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622600 | sp|Q3V384|AFG1L_MOUSE | 40.097 | 414 | 214 | 10 | 85 | 480 | 74 | 471 | 7.37e-83 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003560 | Msa0622600 | 0.860845 | 1.554481e-63 | -8.615850e-47 |
| Msa0011160 | Msa0622600 | 0.812846 | 3.452006e-51 | -8.615850e-47 |
| Msa0029850 | Msa0622600 | 0.802637 | 5.104856e-49 | -8.615850e-47 |
| Msa0038020 | Msa0622600 | 0.805420 | 1.346399e-49 | -8.615850e-47 |
| Msa0051460 | Msa0622600 | 0.816883 | 4.396300e-52 | -8.615850e-47 |
| Msa0058270 | Msa0622600 | 0.809913 | 1.496021e-50 | -8.615850e-47 |
| Msa0076700 | Msa0622600 | 0.806070 | 9.832912e-50 | -8.615850e-47 |
| Msa0085720 | Msa0622600 | 0.831365 | 1.740101e-55 | -8.615850e-47 |
| Msa0622600 | Msa0624230 | 0.803911 | 2.780257e-49 | -8.615850e-47 |
| Msa0622600 | Msa0716750 | 0.811371 | 7.240292e-51 | -8.615850e-47 |
| Msa0622600 | Msa0773310 | 0.808805 | 2.586099e-50 | -8.615850e-47 |
| Msa0622600 | Msa0810760 | 0.820786 | 5.706547e-53 | -8.615850e-47 |
| Msa0622600 | Msa0818110 | 0.838688 | 2.477923e-57 | -8.615850e-47 |
| Msa0622600 | Msa0833670 | -0.801929 | 7.140042e-49 | -8.615850e-47 |
| Msa0622600 | Msa0881160 | 0.999538 | 1.404135e-320 | -8.615850e-47 |
| Msa0622600 | Msa0881210 | -0.805900 | 1.067682e-49 | -8.615850e-47 |
| Msa0622600 | Msa0968150 | 0.809372 | 1.954525e-50 | -8.615850e-47 |
| Msa0622600 | Msa1021510 | 0.806989 | 6.290689e-50 | -8.615850e-47 |
| Msa0622600 | Msa1174310 | 0.820143 | 8.013547e-53 | -8.615850e-47 |
| Msa0622600 | Msa1205390 | 0.818990 | 1.469200e-52 | -8.615850e-47 |
| Msa0622600 | Msa1222280 | 0.976836 | 1.357070e-142 | -8.615850e-47 |
| Msa0622600 | Msa1225730 | -0.809199 | 2.129660e-50 | -8.615850e-47 |
| Msa0622600 | Msa1229610 | 0.807998 | 3.842762e-50 | -8.615850e-47 |
| Msa0622600 | Msa1230830 | 0.802408 | 5.691646e-49 | -8.615850e-47 |
| Msa0622600 | Msa1235400 | 0.827175 | 1.808957e-54 | -8.615850e-47 |
| Msa0622600 | Msa1244930 | 0.820263 | 7.522511e-53 | -8.615850e-47 |
| Msa0622600 | Msa1250310 | 0.832487 | 9.191271e-56 | -8.615850e-47 |
| Msa0622600 | Msa1264770 | 0.921208 | 4.800840e-88 | -8.615850e-47 |
| Msa0622600 | Msa1264860 | -0.853344 | 2.543040e-61 | -8.615850e-47 |
| Msa0622600 | Msa1272320 | 0.800196 | 1.614345e-48 | -8.615850e-47 |
| Msa0622600 | Msa1276510 | 0.823496 | 1.342567e-53 | -8.615850e-47 |
| Msa0622600 | Msa1297310 | 0.818464 | 1.933325e-52 | -8.615850e-47 |
| Msa0622600 | Msa1310220 | 0.830186 | 3.383729e-55 | -8.615850e-47 |
| Msa0622600 | Msa1314770 | 0.834823 | 2.397758e-56 | -8.615850e-47 |
| Msa0622600 | Msa1373350 | 0.823573 | 1.288144e-53 | -8.615850e-47 |
| Msa0622600 | Msa1378230 | 0.803448 | 3.469568e-49 | -8.615850e-47 |
| Msa0622600 | Msa1385020 | 0.819073 | 1.406616e-52 | -8.615850e-47 |
| Msa0622600 | Msa1404240 | -0.809521 | 1.816113e-50 | -8.615850e-47 |
| Msa0622600 | Msa1407650 | 0.849627 | 2.863736e-60 | -8.615850e-47 |
| Msa0622600 | Msa1463650 | -0.840549 | 8.132931e-58 | -8.615850e-47 |
| Msa0124550 | Msa0622600 | 0.801125 | 1.043302e-48 | -8.615850e-47 |
| Msa0132240 | Msa0622600 | 0.815866 | 7.423214e-52 | -8.615850e-47 |
| Msa0143920 | Msa0622600 | 0.802745 | 4.848785e-49 | -8.615850e-47 |
| Msa0169820 | Msa0622600 | 0.817316 | 3.513290e-52 | -8.615850e-47 |
| Msa0175050 | Msa0622600 | 0.828230 | 1.008830e-54 | -8.615850e-47 |
| Msa0183010 | Msa0622600 | -0.805773 | 1.135462e-49 | -8.615850e-47 |
| Msa0230640 | Msa0622600 | -0.800618 | 1.324530e-48 | -8.615850e-47 |
| Msa0388030 | Msa0622600 | -0.801323 | 9.504912e-49 | -8.615850e-47 |
| Msa0438050 | Msa0622600 | 0.817132 | 3.864316e-52 | -8.615850e-47 |
| Msa0278900 | Msa0622600 | 0.809785 | 1.593329e-50 | -8.615850e-47 |
| Msa0527980 | Msa0622600 | -0.811280 | 7.574545e-51 | -8.615850e-47 |
| Msa0532810 | Msa0622600 | -0.806481 | 8.057167e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622600 | MtrunA17_Chr4g0073421 | 98.800 | 500 | 6 | 0 | 1 | 500 | 1 | 500 | 0.0 | 1028 |
| Msa0622600 | MtrunA17_Chr1g0149221 | 32.537 | 335 | 170 | 9 | 150 | 428 | 184 | 518 | 3.52e-45 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622600 | AT4G30490.1 | 72.685 | 432 | 107 | 3 | 67 | 487 | 63 | 494 | 0.0 | 663 |
| Msa0622600 | AT4G28070.2 | 73.923 | 418 | 105 | 2 | 77 | 490 | 53 | 470 | 0.0 | 649 |
| Msa0622600 | AT4G28070.1 | 71.770 | 418 | 105 | 3 | 77 | 490 | 53 | 461 | 0.0 | 623 |
| Msa0622600 | AT2G25530.1 | 30.732 | 410 | 209 | 12 | 148 | 482 | 233 | 642 | 9.92e-46 | 169 |
| Msa0622600 | AT2G25530.2 | 31.229 | 301 | 151 | 9 | 148 | 392 | 233 | 533 | 1.27e-37 | 145 |
Find 120 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTCATTTCCTCATTTC+TGG | 0.034647 | 4_2:+75088604 | Msa0622600:five_prime_UTR |
| GTAAAAGGTTTATATCTTTA+TGG | 0.140769 | 4_2:+75089927 | Msa0622600:CDS |
| CTTGGAGCTGCAGATTATTT+TGG | 0.152535 | 4_2:+75091519 | Msa0622600:CDS |
| CACTCCATTGTACATTATTT+TGG | 0.164150 | 4_2:-75092956 | None:intergenic |
| CATTACTACTTCCACTTCTT+GGG | 0.228752 | 4_2:-75091306 | None:intergenic |
| CCTTCGCATTCACCTGTAAA+AGG | 0.235163 | 4_2:+75089912 | Msa0622600:CDS |
| CCATTACTACTTCCACTTCT+TGG | 0.244604 | 4_2:-75091307 | None:intergenic |
| CTAGTTAGTATCATAGTTAT+TGG | 0.246189 | 4_2:+75092926 | Msa0622600:three_prime_UTR |
| GTGTCATGTCATGTTGGTTT+TGG | 0.251233 | 4_2:-75088420 | None:intergenic |
| CCTTTCATTTCCTCATTTCT+GGG | 0.272586 | 4_2:+75088605 | Msa0622600:five_prime_UTR |
| CCACCCTCATATAGATTATC+TGG | 0.285514 | 4_2:-75090908 | None:intergenic |
| AAGCTCTTCAAAAGGAAAAT+AGG | 0.293582 | 4_2:-75091484 | None:intergenic |
| GCATACATAGGGAGTGAAAA+TGG | 0.307071 | 4_2:+75092750 | Msa0622600:three_prime_UTR |
| TTTCATACTTTAGCACTTGA+TGG | 0.308394 | 4_2:+75091792 | Msa0622600:CDS |
| ATTATGCCTTGATGAATTCA+TGG | 0.316826 | 4_2:+75090595 | Msa0622600:CDS |
| AAATATCCTATATACCTTAC+AGG | 0.319411 | 4_2:-75089747 | None:intergenic |
| TCTCGATCTCGAAGAGGTCC+TGG | 0.326019 | 4_2:-75092295 | None:intergenic |
| ATCTTATCATCCATCATTCC+AGG | 0.334047 | 4_2:+75088652 | Msa0622600:five_prime_UTR |
| TCATCCCCAGGCCCTCAAAT+TGG | 0.346659 | 4_2:+75090194 | Msa0622600:intron |
| TGTAACACAAACAACAATAT+TGG | 0.349539 | 4_2:+75092794 | Msa0622600:three_prime_UTR |
| GGGTGGCCAAGGATTCTATT+TGG | 0.353872 | 4_2:+75091214 | Msa0622600:intron |
| ATCAGCATCTTCCCTCTATC+TGG | 0.354219 | 4_2:+75088309 | Msa0622600:five_prime_UTR |
| CAAAACAGCAATATTGATAT+TGG | 0.355240 | 4_2:-75088520 | None:intergenic |
| TATGTAAACTTACTTGTAAT+AGG | 0.356860 | 4_2:-75090264 | None:intergenic |
| AATCCTATCTTCAAGCTTCA+AGG | 0.384402 | 4_2:-75092686 | None:intergenic |
| TTTACAGACACGGGTGGCTT+TGG | 0.384999 | 4_2:+75089871 | Msa0622600:intron |
| TTGGTTGGCAGTGATTCATC+TGG | 0.385310 | 4_2:+75091233 | Msa0622600:CDS |
| AAGAATTGCTAATGGTGAAT+TGG | 0.392844 | 4_2:+75089434 | Msa0622600:CDS |
| CTTGTGGATGTGGTAATAAA+TGG | 0.393880 | 4_2:-75089223 | None:intergenic |
| CATCTGCAGACCGTTAGATT+TGG | 0.396173 | 4_2:+75092872 | Msa0622600:three_prime_UTR |
| TCTTGCTAAGTGCTTATTGT+TGG | 0.400252 | 4_2:+75093008 | Msa0622600:three_prime_UTR |
| TGCACATAGGTTTGTCACTT+TGG | 0.400483 | 4_2:+75091848 | Msa0622600:CDS |
| CAGGTCCCGTTGGGAGCTAA+TGG | 0.404694 | 4_2:+75091456 | Msa0622600:intron |
| ACCCTTCATTGCAACATTGA+AGG | 0.413167 | 4_2:+75090952 | Msa0622600:CDS |
| TGTCCTTGAAGCTTGAAGAT+AGG | 0.415577 | 4_2:+75092683 | Msa0622600:exon |
| GATCAACAGCAGAGAATACT+TGG | 0.418394 | 4_2:+75092617 | Msa0622600:CDS |
| GATCCACTGGATGTTGTTGC+AGG | 0.421672 | 4_2:+75090548 | Msa0622600:CDS |
| ATGGATGATAAGATAAGAAC+AGG | 0.424664 | 4_2:-75088643 | None:intergenic |
| CTTTGTGTTGACAATGAACT+AGG | 0.429854 | 4_2:+75092336 | Msa0622600:CDS |
| AAAATAAAACATCCAGATAG+AGG | 0.431655 | 4_2:-75088321 | None:intergenic |
| ATCAGCTGAACACAATAATC+TGG | 0.439826 | 4_2:-75092211 | None:intergenic |
| CATACATAGGGAGTGAAAAT+GGG | 0.442649 | 4_2:+75092751 | Msa0622600:three_prime_UTR |
| TTTCTTCATCAGGTCCCGTT+GGG | 0.444742 | 4_2:+75091447 | Msa0622600:intron |
| TCTGATAAACATGTCTCAAT+TGG | 0.445162 | 4_2:-75089072 | None:intergenic |
| TACCTTCAATGTTGCAATGA+AGG | 0.448596 | 4_2:-75090954 | None:intergenic |
| CAAAAGACCGCACCATTAGT+AGG | 0.449826 | 4_2:+75092364 | Msa0622600:CDS |
| GGCCAAGGATTCTATTTGGT+TGG | 0.453292 | 4_2:+75091218 | Msa0622600:CDS |
| GAGCTTTGTGACAAACCTCT+TGG | 0.455322 | 4_2:+75091501 | Msa0622600:CDS |
| ATATATATCATACCTACTAA+TGG | 0.455546 | 4_2:-75092376 | None:intergenic |
| TGCTCCAGATAATCTATATG+AGG | 0.460863 | 4_2:+75090904 | Msa0622600:CDS |
| ATTGTTGTTGTAGCATACAT+AGG | 0.466535 | 4_2:+75092738 | Msa0622600:three_prime_UTR |
| CAAGAAGTGGAAGTAGTAAT+GGG | 0.466955 | 4_2:+75091308 | Msa0622600:CDS |
| CCAAGAAGTGGAAGTAGTAA+TGG | 0.474250 | 4_2:+75091307 | Msa0622600:CDS |
| TTTCAGAATTGCGATCCAAT+TGG | 0.474325 | 4_2:-75089722 | None:intergenic |
| TGCCAACCAAATAGAATCCT+TGG | 0.478466 | 4_2:-75091220 | None:intergenic |
| CAAGGGCCTGTCAGATCCAC+TGG | 0.483629 | 4_2:+75090535 | Msa0622600:CDS |
| GCTAATGGTGAATTGGTAGA+TGG | 0.483791 | 4_2:+75089441 | Msa0622600:CDS |
| CTCGATCTCGAAGAGGTCCT+GGG | 0.489313 | 4_2:-75092294 | None:intergenic |
| TTGTCACAAAGCTCTTCAAA+AGG | 0.489550 | 4_2:-75091492 | None:intergenic |
| GGGTGCCCTTTGTTTAGCCT+CGG | 0.490152 | 4_2:-75092274 | None:intergenic |
| CACATCCATTAGCTCCCAAC+GGG | 0.490986 | 4_2:-75091461 | None:intergenic |
| TTATATCTTTATGGAGGAGT+AGG | 0.496721 | 4_2:+75089936 | Msa0622600:CDS |
| AGATTATTGTGTTCAGCTGA+TGG | 0.497678 | 4_2:+75092213 | Msa0622600:CDS |
| TTTGGACTGTAGGGTGGCCA+AGG | 0.500631 | 4_2:+75091203 | Msa0622600:intron |
| GGTAGATGGTGATAGTTGTC+AGG | 0.502390 | 4_2:+75089455 | Msa0622600:CDS |
| AGATGCATAGCTCATGAGAT+TGG | 0.505032 | 4_2:+75091066 | Msa0622600:CDS |
| TTTCAAATAAAAGAAAAGAA+AGG | 0.508882 | 4_2:+75092847 | Msa0622600:three_prime_UTR |
| GCATGCCGATGAATGCCAAT+TGG | 0.513381 | 4_2:+75089707 | Msa0622600:CDS |
| ACTTCCACTTCTTGGGGAGT+AGG | 0.514314 | 4_2:-75091299 | None:intergenic |
| TATGAACGAAGAATTGCTAA+TGG | 0.515907 | 4_2:+75089426 | Msa0622600:CDS |
| AGAAAACGAACCTGGAATGA+TGG | 0.523555 | 4_2:-75088662 | None:intergenic |
| TTTCAGCAGTTGATTGGAGA+AGG | 0.524309 | 4_2:+75091272 | Msa0622600:CDS |
| ATTACTACTTCCACTTCTTG+GGG | 0.531458 | 4_2:-75091305 | None:intergenic |
| GCGATCCAATTGGCATTCAT+CGG | 0.533556 | 4_2:-75089712 | None:intergenic |
| GATGCTGTGAAGATCACAAA+TGG | 0.541513 | 4_2:+75089259 | Msa0622600:CDS |
| TTGTTGTTGTAGCATACATA+GGG | 0.543752 | 4_2:+75092739 | Msa0622600:three_prime_UTR |
| ACATAGGTTTGTCACTTTGG+TGG | 0.544354 | 4_2:+75091851 | Msa0622600:CDS |
| AATATCCGAGGCTAAACAAA+GGG | 0.547286 | 4_2:+75092269 | Msa0622600:CDS |
| AATTTACCATGAATTCATCA+AGG | 0.550011 | 4_2:-75090601 | None:intergenic |
| ATCTGGAGCACGATTTGAAG+TGG | 0.553243 | 4_2:-75090891 | None:intergenic |
| ACCTTCAATGTTGCAATGAA+GGG | 0.553846 | 4_2:-75090953 | None:intergenic |
| AGAAGAGAATCCCAGAAATG+AGG | 0.554653 | 4_2:-75088615 | None:intergenic |
| CACTGGCAAAACTATGCTGA+TGG | 0.554874 | 4_2:+75089959 | Msa0622600:CDS |
| AAAGGTTTATATCTTTATGG+AGG | 0.555222 | 4_2:+75089930 | Msa0622600:CDS |
| TGTGCAAGTGCCAAATCTAA+CGG | 0.557812 | 4_2:-75092882 | None:intergenic |
| GTTACAGTAACTAACAGAAG+TGG | 0.569680 | 4_2:+75089390 | Msa0622600:intron |
| GGAGTGAAAATGGGGTCAAG+TGG | 0.570176 | 4_2:+75092760 | Msa0622600:three_prime_UTR |
| CAAATCTAACGGTCTGCAGA+TGG | 0.575054 | 4_2:-75092871 | None:intergenic |
| TGAGATAGATCTTGTGGATG+TGG | 0.578254 | 4_2:-75089233 | None:intergenic |
| TTCAGACATCTATTCAGCAA+AGG | 0.578860 | 4_2:+75090744 | Msa0622600:CDS |
| CTTTATGGAGGAGTAGGCAC+TGG | 0.579507 | 4_2:+75089942 | Msa0622600:CDS |
| TTTGTGTTGACAATGAACTA+GGG | 0.582172 | 4_2:+75092337 | Msa0622600:CDS |
| AGCAGAAAAGAAAGAAAGAG+AGG | 0.582199 | 4_2:+75092653 | Msa0622600:CDS |
| CTTCGTTCATACTCGACAAG+AGG | 0.582706 | 4_2:-75089414 | None:intergenic |
| CACACCTACTCCCCAAGAAG+TGG | 0.584261 | 4_2:+75091295 | Msa0622600:CDS |
| GATATTGTGTCATGTCATGT+TGG | 0.587354 | 4_2:-75088426 | None:intergenic |
| ATCAGCTGAGATAGATCTTG+TGG | 0.587879 | 4_2:-75089239 | None:intergenic |
| ATATGAGGGTGGACTGCAGA+GGG | 0.590233 | 4_2:+75090919 | Msa0622600:CDS |
| GTAATAAAGCAGCTGCACAT+AGG | 0.592138 | 4_2:+75091835 | Msa0622600:CDS |
| CCCAGAAATGAGGAAATGAA+AGG | 0.592333 | 4_2:-75088605 | None:intergenic |
| GCGATTAAGTATCAATGCAT+CGG | 0.592840 | 4_2:-75090718 | None:intergenic |
| AAATAAAACATCCAGATAGA+GGG | 0.600644 | 4_2:-75088320 | None:intergenic |
| TGTGTCCTTGTAGAAGCACA+AGG | 0.601086 | 4_2:+75090517 | Msa0622600:intron |
| TTTGAGTTGGACATTTGACT+CGG | 0.602275 | 4_2:-75088378 | None:intergenic |
| CAACATCCAGTGGATCTGAC+AGG | 0.604333 | 4_2:-75090541 | None:intergenic |
| TGACTACCGCAAAATGACTT+CGG | 0.612203 | 4_2:+75091098 | Msa0622600:CDS |
| AGAACCAAAATAATGTACAA+TGG | 0.615266 | 4_2:+75092952 | Msa0622600:three_prime_UTR |
| TCTCCTGCAACAACATCCAG+TGG | 0.615366 | 4_2:-75090551 | None:intergenic |
| GCTCCAGATAATCTATATGA+GGG | 0.631147 | 4_2:+75090905 | Msa0622600:CDS |
| AAATAATCTGCAGCTCCAAG+AGG | 0.636094 | 4_2:-75091516 | None:intergenic |
| CCAGATAATCTATATGAGGG+TGG | 0.640752 | 4_2:+75090908 | Msa0622600:CDS |
| GCACATCCATTAGCTCCCAA+CGG | 0.641018 | 4_2:-75091462 | None:intergenic |
| CAATATCCGAGGCTAAACAA+AGG | 0.645978 | 4_2:+75092268 | Msa0622600:CDS |
| TATATGAGGGTGGACTGCAG+AGG | 0.648674 | 4_2:+75090918 | Msa0622600:CDS |
| ATACATAGGGAGTGAAAATG+GGG | 0.651485 | 4_2:+75092752 | Msa0622600:three_prime_UTR |
| TATCATACCTACTAATGGTG+CGG | 0.657100 | 4_2:-75092371 | None:intergenic |
| AGGCTAAACAAAGGGCACCC+AGG | 0.661005 | 4_2:+75092277 | Msa0622600:CDS |
| GTGTCCTTGTAGAAGCACAA+GGG | 0.667573 | 4_2:+75090518 | Msa0622600:intron |
| TGGATGTGGTAATAAATGGA+CGG | 0.699883 | 4_2:-75089219 | None:intergenic |
| GCTGTGAAGATCACAAATGG+AGG | 0.734691 | 4_2:+75089262 | Msa0622600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCTTTTTATTATTTAATTTT+CGG | + | chr4_2:75088896-75088915 | Msa0622600:intron | 10.0% |
| !!! | TTTGAACATTAATTAATTTT+GGG | + | chr4_2:75090410-75090429 | Msa0622600:intron | 10.0% |
| !!! | ATGTTTTTTTTTTTTTGAGT+TGG | - | chr4_2:75088394-75088413 | None:intergenic | 15.0% |
| !! | CCGAAAATTAAATAATAAAA+AGG | - | chr4_2:75088899-75088918 | None:intergenic | 15.0% |
| !!! | CTTTGAACATTAATTAATTT+TGG | + | chr4_2:75090409-75090428 | Msa0622600:intron | 15.0% |
| !!! | GCTTTAAATATTTTTATAGT+TGG | + | chr4_2:75090978-75090997 | Msa0622600:intron | 15.0% |
| !!! | TATTTGTTTTTATGCTAATT+TGG | + | chr4_2:75091185-75091204 | Msa0622600:intron | 15.0% |
| !! | ATTAATTTAATGTTCCAAAA+TGG | - | chr4_2:75091605-75091624 | None:intergenic | 15.0% |
| !!! | ATCTTTAAAATTAGAATTTC+AGG | - | chr4_2:75092055-75092074 | None:intergenic | 15.0% |
| !!! | AAAAATTGTACAATTAGTTT+TGG | + | chr4_2:75092406-75092425 | Msa0622600:intron | 15.0% |
| !!! | TTGGTTTTTATTCATAAAAT+AGG | + | chr4_2:75092507-75092526 | Msa0622600:intron | 15.0% |
| !!! | TGGTTTTTATTCATAAAATA+GGG | + | chr4_2:75092508-75092527 | Msa0622600:intron | 15.0% |
| !! | TTTCAAATAAAAGAAAAGAA+AGG | + | chr4_2:75092847-75092866 | Msa0622600:three_prime_UTR | 15.0% |
| !!! | TTATTTTTGTAATTGTAACG+TGG | + | chr4_2:75088337-75088356 | Msa0622600:five_prime_UTR | 20.0% |
| !!! | ATTTTTGCATGTATTGTAAT+TGG | - | chr4_2:75088553-75088572 | None:intergenic | 20.0% |
| !!! | GTGTTTTTTTTTTTATTGCA+GGG | + | chr4_2:75088964-75088983 | Msa0622600:intron | 20.0% |
| !!! | TTTTCTTATCTGATTTGTAT+TGG | + | chr4_2:75089353-75089372 | Msa0622600:intron | 20.0% |
| !! | AAGAAGGCAAAAAAATAAAT+AGG | - | chr4_2:75089628-75089647 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTTTACAGACA+CGG | + | chr4_2:75089861-75089880 | Msa0622600:intron | 20.0% |
| !!! | TTTTTTTTTTTTACAGACAC+GGG | + | chr4_2:75089862-75089881 | Msa0622600:intron | 20.0% |
| !!! | TAAAGATATAAACCTTTTAC+AGG | - | chr4_2:75089927-75089946 | None:intergenic | 20.0% |
| !! | GTAAAAGGTTTATATCTTTA+TGG | + | chr4_2:75089927-75089946 | Msa0622600:CDS | 20.0% |
| !! | ACAAAATTAAGAAATCAAGA+CGG | - | chr4_2:75090026-75090045 | None:intergenic | 20.0% |
| !! | TATGTAAACTTACTTGTAAT+AGG | - | chr4_2:75090267-75090286 | None:intergenic | 20.0% |
| !! | AAAAAAAGGATACATCTAAA+AGG | - | chr4_2:75090302-75090321 | None:intergenic | 20.0% |
| !! | CCAAAAGAATACATAATTAT+TGG | - | chr4_2:75090354-75090373 | None:intergenic | 20.0% |
| !!! | CCAATAATTATGTATTCTTT+TGG | + | chr4_2:75090351-75090370 | Msa0622600:intron | 20.0% |
| !!! | AATATTTTTATAGTTGGAAG+TGG | + | chr4_2:75090984-75091003 | Msa0622600:intron | 20.0% |
| !! | TTCTTTCATTGTGATAATTT+CGG | + | chr4_2:75091662-75091681 | Msa0622600:intron | 20.0% |
| !!! | TATTAAAATATGAAGTGCTT+GGG | - | chr4_2:75091948-75091967 | None:intergenic | 20.0% |
| !!! | TGGCATTAATTTTATATAGA+GGG | - | chr4_2:75092151-75092170 | None:intergenic | 20.0% |
| !!! | ATGGCATTAATTTTATATAG+AGG | - | chr4_2:75092152-75092171 | None:intergenic | 20.0% |
| !! | ATATATATCATACCTACTAA+TGG | - | chr4_2:75092379-75092398 | None:intergenic | 20.0% |
| !! | TGAATAAAAACCAAACAATT+GGG | - | chr4_2:75092501-75092520 | None:intergenic | 20.0% |
| !! | ATGAATAAAAACCAAACAAT+TGG | - | chr4_2:75092502-75092521 | None:intergenic | 20.0% |
| ! | AAATAAAACATCCAGATAGA+GGG | - | chr4_2:75088323-75088342 | None:intergenic | 25.0% |
| ! | AAAATAAAACATCCAGATAG+AGG | - | chr4_2:75088324-75088343 | None:intergenic | 25.0% |
| ! | CAAAACAGCAATATTGATAT+TGG | - | chr4_2:75088523-75088542 | None:intergenic | 25.0% |
| !!! | AATGAAAGGTTGAGTTTTTT+GGG | - | chr4_2:75088594-75088613 | None:intergenic | 25.0% |
| !!! | AAATGAAAGGTTGAGTTTTT+TGG | - | chr4_2:75088595-75088614 | None:intergenic | 25.0% |
| ! | CTAACATATTGGAATGAATT+GGG | + | chr4_2:75088780-75088799 | Msa0622600:intron | 25.0% |
| ! | AATGAATTGGGATTTGAAAA+TGG | + | chr4_2:75088792-75088811 | Msa0622600:intron | 25.0% |
| !!! | CGTGTTTTTTTTTTTATTGC+AGG | + | chr4_2:75088963-75088982 | Msa0622600:intron | 25.0% |
| !! | GGATTCTTGAAAAATTTTGT+GGG | + | chr4_2:75088985-75089004 | Msa0622600:five_prime_UTR | 25.0% |
| !! | TGAAATTATTTTCCCTACTT+TGG | + | chr4_2:75089514-75089533 | Msa0622600:intron | 25.0% |
| ! | AAATATCCTATATACCTTAC+AGG | - | chr4_2:75089750-75089769 | None:intergenic | 25.0% |
| ! | TGTTCAAATCTTGAACTTTA+TGG | + | chr4_2:75089793-75089812 | Msa0622600:intron | 25.0% |
| ! | CGTGTCTGTAAAAAAAAAAA+AGG | - | chr4_2:75089863-75089882 | None:intergenic | 25.0% |
| ! | AAAGGTTTATATCTTTATGG+AGG | + | chr4_2:75089930-75089949 | Msa0622600:CDS | 25.0% |
| ! | TTTATGATCAATTGTGAGTT+TGG | + | chr4_2:75089988-75090007 | Msa0622600:intron | 25.0% |
| !! | TTTTGTATTACATGCTATTG+AGG | + | chr4_2:75090040-75090059 | Msa0622600:intron | 25.0% |
| ! | AATTTACCATGAATTCATCA+AGG | - | chr4_2:75090604-75090623 | None:intergenic | 25.0% |
| ! | CATAAAATCATGTTGTATAG+AGG | - | chr4_2:75090800-75090819 | None:intergenic | 25.0% |
| !! | CTCTATACAACATGATTTTA+TGG | + | chr4_2:75090798-75090817 | Msa0622600:intron | 25.0% |
| ! | AGATAATGATTTCATTGTTG+TGG | + | chr4_2:75091629-75091648 | Msa0622600:intron | 25.0% |
| ! | GGAAATCTGTAAAATTATGA+AGG | - | chr4_2:75091711-75091730 | None:intergenic | 25.0% |
| ! | TTTATGGATCTCTCATATAA+TGG | - | chr4_2:75091732-75091751 | None:intergenic | 25.0% |
| !!! | CATTGTGTAACATTGATTTA+TGG | - | chr4_2:75091748-75091767 | None:intergenic | 25.0% |
| ! | TTATTACTAAGCCCAAAAAT+CGG | - | chr4_2:75091822-75091841 | None:intergenic | 25.0% |
| ! | AGAAGACAAAGTTTAAATGT+GGG | - | chr4_2:75091901-75091920 | None:intergenic | 25.0% |
| !! | CTATTAAAATATGAAGTGCT+TGG | - | chr4_2:75091949-75091968 | None:intergenic | 25.0% |
| !!! | TTTTTTGAAAGAGATCAAGA+GGG | - | chr4_2:75092242-75092261 | None:intergenic | 25.0% |
| !!! | ATTTTTTGAAAGAGATCAAG+AGG | - | chr4_2:75092243-75092262 | None:intergenic | 25.0% |
| ! | AAAAATAGTAACAATATCCG+AGG | + | chr4_2:75092257-75092276 | Msa0622600:CDS | 25.0% |
| ! | TGATCAGTAATCATTAATCA+TGG | - | chr4_2:75092569-75092588 | None:intergenic | 25.0% |
| ! | TGTAACACAAACAACAATAT+TGG | + | chr4_2:75092794-75092813 | Msa0622600:three_prime_UTR | 25.0% |
| ! | CTAGTTAGTATCATAGTTAT+TGG | + | chr4_2:75092926-75092945 | Msa0622600:three_prime_UTR | 25.0% |
| ! | AGAACCAAAATAATGTACAA+TGG | + | chr4_2:75092952-75092971 | Msa0622600:three_prime_UTR | 25.0% |
| ATGGATGATAAGATAAGAAC+AGG | - | chr4_2:75088646-75088665 | None:intergenic | 30.0% | |
| TTAGGAAGATTGCTGAAAAA+GGG | - | chr4_2:75088764-75088783 | None:intergenic | 30.0% | |
| CCAATTCATTCCAATATGTT+AGG | - | chr4_2:75088782-75088801 | None:intergenic | 30.0% | |
| CCTAACATATTGGAATGAAT+TGG | + | chr4_2:75088779-75088798 | Msa0622600:intron | 30.0% | |
| ! | GGGATTCTTGAAAAATTTTG+TGG | + | chr4_2:75088984-75089003 | Msa0622600:intron | 30.0% |
| TCTGATAAACATGTCTCAAT+TGG | - | chr4_2:75089075-75089094 | None:intergenic | 30.0% | |
| ! | CAACACTTTTCAAAGTAACA+AGG | - | chr4_2:75089139-75089158 | None:intergenic | 30.0% |
| TATGAACGAAGAATTGCTAA+TGG | + | chr4_2:75089426-75089445 | Msa0622600:CDS | 30.0% | |
| AAGAATTGCTAATGGTGAAT+TGG | + | chr4_2:75089434-75089453 | Msa0622600:CDS | 30.0% | |
| !! | TTTTCCCTACTTTGGTTTAT+CGG | + | chr4_2:75089522-75089541 | Msa0622600:intron | 30.0% |
| !!! | TTTTTTGCCTTCTTTTGTTG+AGG | + | chr4_2:75089634-75089653 | Msa0622600:intron | 30.0% |
| GAAAAACCTGTAAGGTATAT+AGG | + | chr4_2:75089741-75089760 | Msa0622600:intron | 30.0% | |
| TTATATCTTTATGGAGGAGT+AGG | + | chr4_2:75089936-75089955 | Msa0622600:CDS | 30.0% | |
| !!! | ATTTTCAAGTCTCAGTGTAA+GGG | + | chr4_2:75090076-75090095 | Msa0622600:intron | 30.0% |
| TTTAACCTCATAAGAACACA+TGG | - | chr4_2:75090134-75090153 | None:intergenic | 30.0% | |
| ! | CTCTTTTTCTTCCAATTTGA+GGG | - | chr4_2:75090208-75090227 | None:intergenic | 30.0% |
| CAAGTAGGGAATAGAAAAAA+AGG | - | chr4_2:75090316-75090335 | None:intergenic | 30.0% | |
| TAATTGACAAACAGAGTATG+AGG | + | chr4_2:75090469-75090488 | Msa0622600:intron | 30.0% | |
| ATTATGCCTTGATGAATTCA+TGG | + | chr4_2:75090595-75090614 | Msa0622600:CDS | 30.0% | |
| CTTCATTTCTTCAATGTGTT+TGG | + | chr4_2:75090846-75090865 | Msa0622600:intron | 30.0% | |
| TACATCAGTATACACATACT+AGG | - | chr4_2:75091042-75091061 | None:intergenic | 30.0% | |
| TAGTATGTGTATACTGATGT+AGG | + | chr4_2:75091041-75091060 | Msa0622600:intron | 30.0% | |
| TTTATGCTAATTTGGACTGT+AGG | + | chr4_2:75091193-75091212 | Msa0622600:intron | 30.0% | |
| TTATGCTAATTTGGACTGTA+GGG | + | chr4_2:75091194-75091213 | Msa0622600:intron | 30.0% | |
| AAAAAGTTTCAGCAGTTGAT+TGG | + | chr4_2:75091266-75091285 | Msa0622600:CDS | 30.0% | |
| AAGCTCTTCAAAAGGAAAAT+AGG | - | chr4_2:75091487-75091506 | None:intergenic | 30.0% | |
| TTTCATACTTTAGCACTTGA+TGG | + | chr4_2:75091792-75091811 | Msa0622600:CDS | 30.0% | |
| TATTACTAAGCCCAAAAATC+GGG | - | chr4_2:75091821-75091840 | None:intergenic | 30.0% | |
| ! | TGGATGTAAGTCCTTTTAAA+TGG | + | chr4_2:75091871-75091890 | Msa0622600:intron | 30.0% |
| GAGAAGACAAAGTTTAAATG+TGG | - | chr4_2:75091902-75091921 | None:intergenic | 30.0% | |
| ACATAATCTCATTCATAGCT+AGG | - | chr4_2:75091992-75092011 | None:intergenic | 30.0% | |
| AAGCTTATTCCACTTCAATA+AGG | + | chr4_2:75092089-75092108 | Msa0622600:intron | 30.0% | |
| TGTTACAAACAAACAAAGCA+TGG | - | chr4_2:75092171-75092190 | None:intergenic | 30.0% | |
| !! | ATGCTTTGTTTGTTTGTAAC+AGG | + | chr4_2:75092170-75092189 | Msa0622600:intron | 30.0% |
| ! | TTTGTGTTGACAATGAACTA+GGG | + | chr4_2:75092337-75092356 | Msa0622600:CDS | 30.0% |
| ATGTAAATTGCCCAATTGTT+TGG | + | chr4_2:75092488-75092507 | Msa0622600:intron | 30.0% | |
| TCATAAAATAGGGCGAAAAA+TGG | + | chr4_2:75092518-75092537 | Msa0622600:intron | 30.0% | |
| ! | ATTGTTGTTGTAGCATACAT+AGG | + | chr4_2:75092738-75092757 | Msa0622600:three_prime_UTR | 30.0% |
| ! | TTGTTGTTGTAGCATACATA+GGG | + | chr4_2:75092739-75092758 | Msa0622600:three_prime_UTR | 30.0% |
| ! | CACTCCATTGTACATTATTT+TGG | - | chr4_2:75092959-75092978 | None:intergenic | 30.0% |
| !! | TTTGAGTTGGACATTTGACT+CGG | - | chr4_2:75088381-75088400 | None:intergenic | 35.0% |
| !!! | TGTCATGTCATGTTGGTTTT+GGG | - | chr4_2:75088422-75088441 | None:intergenic | 35.0% |
| GATATTGTGTCATGTCATGT+TGG | - | chr4_2:75088429-75088448 | None:intergenic | 35.0% | |
| !!! | GTTTTTTGGGAGTGAAAAGA+GGG | - | chr4_2:75088581-75088600 | None:intergenic | 35.0% |
| !!! | AGTTTTTTGGGAGTGAAAAG+AGG | - | chr4_2:75088582-75088601 | None:intergenic | 35.0% |
| ACCTTTCATTTCCTCATTTC+TGG | + | chr4_2:75088604-75088623 | Msa0622600:five_prime_UTR | 35.0% | |
| CCTTTCATTTCCTCATTTCT+GGG | + | chr4_2:75088605-75088624 | Msa0622600:five_prime_UTR | 35.0% | |
| ATCTTATCATCCATCATTCC+AGG | + | chr4_2:75088652-75088671 | Msa0622600:five_prime_UTR | 35.0% | |
| TAATGATGAGAAAACGAACC+TGG | - | chr4_2:75088673-75088692 | None:intergenic | 35.0% | |
| GTTAGGAAGATTGCTGAAAA+AGG | - | chr4_2:75088765-75088784 | None:intergenic | 35.0% | |
| CAGCAATCTTCCTAACATAT+TGG | + | chr4_2:75088769-75088788 | Msa0622600:intron | 35.0% | |
| TGGATGTGGTAATAAATGGA+CGG | - | chr4_2:75089222-75089241 | None:intergenic | 35.0% | |
| CTTGTGGATGTGGTAATAAA+TGG | - | chr4_2:75089226-75089245 | None:intergenic | 35.0% | |
| GTTACAGTAACTAACAGAAG+TGG | + | chr4_2:75089390-75089409 | Msa0622600:intron | 35.0% | |
| ! | TTTCCCTACTTTGGTTTATC+GGG | + | chr4_2:75089523-75089542 | Msa0622600:intron | 35.0% |
| TTTCCCGATAAACCAAAGTA+GGG | - | chr4_2:75089529-75089548 | None:intergenic | 35.0% | |
| ! | TTTTCCCGATAAACCAAAGT+AGG | - | chr4_2:75089530-75089549 | None:intergenic | 35.0% |
| ATCATGCATGCATTTGTTCA+TGG | + | chr4_2:75089569-75089588 | Msa0622600:intron | 35.0% | |
| TTTCAGAATTGCGATCCAAT+TGG | - | chr4_2:75089725-75089744 | None:intergenic | 35.0% | |
| ! | GCAATTCTGAAAAACCTGTA+AGG | + | chr4_2:75089733-75089752 | Msa0622600:CDS | 35.0% |
| ATTTGAACAGACATATCAGC+AGG | - | chr4_2:75089782-75089801 | None:intergenic | 35.0% | |
| ! | TCTGTTTTCACATCATGTTG+AGG | + | chr4_2:75089818-75089837 | Msa0622600:intron | 35.0% |
| !!! | TTTTTTTTTACAGACACGGG+TGG | + | chr4_2:75089865-75089884 | Msa0622600:intron | 35.0% |
| ! | TGCTATTGAGGCAAATTTTG+AGG | + | chr4_2:75090052-75090071 | Msa0622600:intron | 35.0% |
| !!! | CATTTTCAAGTCTCAGTGTA+AGG | + | chr4_2:75090075-75090094 | Msa0622600:intron | 35.0% |
| !!! | TTTTCAAGTCTCAGTGTAAG+GGG | + | chr4_2:75090077-75090096 | Msa0622600:intron | 35.0% |
| ! | AGTGTAAGGGGAATATTTTG+AGG | + | chr4_2:75090089-75090108 | Msa0622600:intron | 35.0% |
| TTATGCCATGTGTTCTTATG+AGG | + | chr4_2:75090126-75090145 | Msa0622600:intron | 35.0% | |
| AATCAAGCATACAATAGAGC+TGG | - | chr4_2:75090170-75090189 | None:intergenic | 35.0% | |
| ! | CCTCTTTTTCTTCCAATTTG+AGG | - | chr4_2:75090209-75090228 | None:intergenic | 35.0% |
| CCTCAAATTGGAAGAAAAAG+AGG | + | chr4_2:75090206-75090225 | Msa0622600:CDS | 35.0% | |
| TTCTATTCCCTACTTGACTT+AGG | + | chr4_2:75090320-75090339 | Msa0622600:intron | 35.0% | |
| TCTATTCCCTACTTGACTTA+GGG | + | chr4_2:75090321-75090340 | Msa0622600:intron | 35.0% | |
| ATTCTTCCCTAAGTCAAGTA+GGG | - | chr4_2:75090330-75090349 | None:intergenic | 35.0% | |
| AATTCTTCCCTAAGTCAAGT+AGG | - | chr4_2:75090331-75090350 | None:intergenic | 35.0% | |
| GCGATTAAGTATCAATGCAT+CGG | - | chr4_2:75090721-75090740 | None:intergenic | 35.0% | |
| TTCAGACATCTATTCAGCAA+AGG | + | chr4_2:75090744-75090763 | Msa0622600:CDS | 35.0% | |
| TGCTCCAGATAATCTATATG+AGG | + | chr4_2:75090904-75090923 | Msa0622600:CDS | 35.0% | |
| GCTCCAGATAATCTATATGA+GGG | + | chr4_2:75090905-75090924 | Msa0622600:CDS | 35.0% | |
| ACCTTCAATGTTGCAATGAA+GGG | - | chr4_2:75090956-75090975 | None:intergenic | 35.0% | |
| TACCTTCAATGTTGCAATGA+AGG | - | chr4_2:75090957-75090976 | None:intergenic | 35.0% | |
| ATTACTACTTCCACTTCTTG+GGG | - | chr4_2:75091308-75091327 | None:intergenic | 35.0% | |
| CATTACTACTTCCACTTCTT+GGG | - | chr4_2:75091309-75091328 | None:intergenic | 35.0% | |
| CAAGAAGTGGAAGTAGTAAT+GGG | + | chr4_2:75091308-75091327 | Msa0622600:CDS | 35.0% | |
| ! | TATTGCTCGTTTTCTTCATC+AGG | + | chr4_2:75091437-75091456 | Msa0622600:intron | 35.0% |
| TTGTCACAAAGCTCTTCAAA+AGG | - | chr4_2:75091495-75091514 | None:intergenic | 35.0% | |
| ATGTGGGCAAACCATTTAAA+AGG | - | chr4_2:75091885-75091904 | None:intergenic | 35.0% | |
| ! | CACTTCAATAAGGCATCATT+GGG | + | chr4_2:75092099-75092118 | Msa0622600:intron | 35.0% |
| AGAGGGTAACTAAAATGCAT+AGG | - | chr4_2:75092134-75092153 | None:intergenic | 35.0% | |
| ATCAGCTGAACACAATAATC+TGG | - | chr4_2:75092214-75092233 | None:intergenic | 35.0% | |
| AGATTATTGTGTTCAGCTGA+TGG | + | chr4_2:75092213-75092232 | Msa0622600:CDS | 35.0% | |
| AATATCCGAGGCTAAACAAA+GGG | + | chr4_2:75092269-75092288 | Msa0622600:CDS | 35.0% | |
| !!! | ATTTTTTCTCGATCTCGAAG+AGG | - | chr4_2:75092304-75092323 | None:intergenic | 35.0% |
| GAGATCGAGAAAAAATGATG+AGG | + | chr4_2:75092308-75092327 | Msa0622600:CDS | 35.0% | |
| ! | CTTTGTGTTGACAATGAACT+AGG | + | chr4_2:75092336-75092355 | Msa0622600:CDS | 35.0% |
| TATCATACCTACTAATGGTG+CGG | - | chr4_2:75092374-75092393 | None:intergenic | 35.0% | |
| AGATCATGAACAAACTCTAG+AGG | + | chr4_2:75092446-75092465 | Msa0622600:intron | 35.0% | |
| AGCAGAAAAGAAAGAAAGAG+AGG | + | chr4_2:75092653-75092672 | Msa0622600:CDS | 35.0% | |
| AATCCTATCTTCAAGCTTCA+AGG | - | chr4_2:75092689-75092708 | None:intergenic | 35.0% | |
| CATACATAGGGAGTGAAAAT+GGG | + | chr4_2:75092751-75092770 | Msa0622600:three_prime_UTR | 35.0% | |
| ATACATAGGGAGTGAAAATG+GGG | + | chr4_2:75092752-75092771 | Msa0622600:three_prime_UTR | 35.0% | |
| TCTTGCTAAGTGCTTATTGT+TGG | + | chr4_2:75093008-75093027 | Msa0622600:three_prime_UTR | 35.0% | |
| !!! | GTGTCATGTCATGTTGGTTT+TGG | - | chr4_2:75088423-75088442 | None:intergenic | 40.0% |
| CCCAGAAATGAGGAAATGAA+AGG | - | chr4_2:75088608-75088627 | None:intergenic | 40.0% | |
| AGAAGAGAATCCCAGAAATG+AGG | - | chr4_2:75088618-75088637 | None:intergenic | 40.0% | |
| AGAAAACGAACCTGGAATGA+TGG | - | chr4_2:75088665-75088684 | None:intergenic | 40.0% | |
| TGAGATAGATCTTGTGGATG+TGG | - | chr4_2:75089236-75089255 | None:intergenic | 40.0% | |
| ATCAGCTGAGATAGATCTTG+TGG | - | chr4_2:75089242-75089261 | None:intergenic | 40.0% | |
| GATGCTGTGAAGATCACAAA+TGG | + | chr4_2:75089259-75089278 | Msa0622600:CDS | 40.0% | |
| GCTAATGGTGAATTGGTAGA+TGG | + | chr4_2:75089441-75089460 | Msa0622600:CDS | 40.0% | |
| GTTTATCGGGAAAATGTTGC+TGG | + | chr4_2:75089536-75089555 | Msa0622600:intron | 40.0% | |
| ! | TTGCCTTCTTTTGTTGAGGT+AGG | + | chr4_2:75089638-75089657 | Msa0622600:intron | 40.0% |
| CAACCTACCTCAACAAAAGA+AGG | - | chr4_2:75089644-75089663 | None:intergenic | 40.0% | |
| !!! | GCTTGATTTTTTTCATCCCC+AGG | + | chr4_2:75090182-75090201 | Msa0622600:intron | 40.0% |
| TGTCACAGCTTGAGATTTGT+TGG | + | chr4_2:75090672-75090691 | Msa0622600:intron | 40.0% | |
| !! | GAGATTTGTTGGTCTTCTGT+AGG | + | chr4_2:75090683-75090702 | Msa0622600:intron | 40.0% |
| CCACCCTCATATAGATTATC+TGG | - | chr4_2:75090911-75090930 | None:intergenic | 40.0% | |
| CCAGATAATCTATATGAGGG+TGG | + | chr4_2:75090908-75090927 | Msa0622600:CDS | 40.0% | |
| ACCCTTCATTGCAACATTGA+AGG | + | chr4_2:75090952-75090971 | Msa0622600:CDS | 40.0% | |
| AGATGCATAGCTCATGAGAT+TGG | + | chr4_2:75091066-75091085 | Msa0622600:CDS | 40.0% | |
| TGACTACCGCAAAATGACTT+CGG | + | chr4_2:75091098-75091117 | Msa0622600:CDS | 40.0% | |
| !! | GTCATACCGAAGTCATTTTG+CGG | - | chr4_2:75091107-75091126 | None:intergenic | 40.0% |
| TGCCAACCAAATAGAATCCT+TGG | - | chr4_2:75091223-75091242 | None:intergenic | 40.0% | |
| TTTCAGCAGTTGATTGGAGA+AGG | + | chr4_2:75091272-75091291 | Msa0622600:CDS | 40.0% | |
| CCATTACTACTTCCACTTCT+TGG | - | chr4_2:75091310-75091329 | None:intergenic | 40.0% | |
| CCAAGAAGTGGAAGTAGTAA+TGG | + | chr4_2:75091307-75091326 | Msa0622600:CDS | 40.0% | |
| AAATAATCTGCAGCTCCAAG+AGG | - | chr4_2:75091519-75091538 | None:intergenic | 40.0% | |
| ! | CTTGGAGCTGCAGATTATTT+TGG | + | chr4_2:75091519-75091538 | Msa0622600:CDS | 40.0% |
| TCTCAAGCAAAATGCAAACG+AGG | + | chr4_2:75091575-75091594 | Msa0622600:intron | 40.0% | |
| CTCAAGCAAAATGCAAACGA+GGG | + | chr4_2:75091576-75091595 | Msa0622600:intron | 40.0% | |
| !! | TTGATGGCATCCCGATTTTT+GGG | + | chr4_2:75091808-75091827 | Msa0622600:CDS | 40.0% |
| GTAATAAAGCAGCTGCACAT+AGG | + | chr4_2:75091835-75091854 | Msa0622600:CDS | 40.0% | |
| ! | TGCACATAGGTTTGTCACTT+TGG | + | chr4_2:75091848-75091867 | Msa0622600:CDS | 40.0% |
| !! | ACATAGGTTTGTCACTTTGG+TGG | + | chr4_2:75091851-75091870 | Msa0622600:CDS | 40.0% |
| ! | CCAATGATGCCTTATTGAAG+TGG | - | chr4_2:75092101-75092120 | None:intergenic | 40.0% |
| ! | CCACTTCAATAAGGCATCAT+TGG | + | chr4_2:75092098-75092117 | Msa0622600:intron | 40.0% |
| ! | TCAATAAGGCATCATTGGGA+CGG | + | chr4_2:75092103-75092122 | Msa0622600:intron | 40.0% |
| CAATATCCGAGGCTAAACAA+AGG | + | chr4_2:75092268-75092287 | Msa0622600:CDS | 40.0% | |
| ! | TGAACAAACTCTAGAGGTTG+AGG | + | chr4_2:75092452-75092471 | Msa0622600:intron | 40.0% |
| GATCAACAGCAGAGAATACT+TGG | + | chr4_2:75092617-75092636 | Msa0622600:CDS | 40.0% | |
| TGTCCTTGAAGCTTGAAGAT+AGG | + | chr4_2:75092683-75092702 | Msa0622600:exon | 40.0% | |
| GCATACATAGGGAGTGAAAA+TGG | + | chr4_2:75092750-75092769 | Msa0622600:three_prime_UTR | 40.0% | |
| TGTGCAAGTGCCAAATCTAA+CGG | - | chr4_2:75092885-75092904 | None:intergenic | 40.0% | |
| TTTGGCACTTGCACAAAAAG+CGG | + | chr4_2:75092890-75092909 | Msa0622600:three_prime_UTR | 40.0% | |
| ATCAGCATCTTCCCTCTATC+TGG | + | chr4_2:75088309-75088328 | Msa0622600:five_prime_UTR | 45.0% | |
| GCTGTGAAGATCACAAATGG+AGG | + | chr4_2:75089262-75089281 | Msa0622600:CDS | 45.0% | |
| CTTCGTTCATACTCGACAAG+AGG | - | chr4_2:75089417-75089436 | None:intergenic | 45.0% | |
| GGTAGATGGTGATAGTTGTC+AGG | + | chr4_2:75089455-75089474 | Msa0622600:CDS | 45.0% | |
| GCGATCCAATTGGCATTCAT+CGG | - | chr4_2:75089715-75089734 | None:intergenic | 45.0% | |
| TTCACATCATGTTGAGGCTC+TGG | + | chr4_2:75089824-75089843 | Msa0622600:intron | 45.0% | |
| ! | CCTTTTACAGGTGAATGCGA+AGG | - | chr4_2:75089915-75089934 | None:intergenic | 45.0% |
| CCTTCGCATTCACCTGTAAA+AGG | + | chr4_2:75089912-75089931 | Msa0622600:CDS | 45.0% | |
| CACTGGCAAAACTATGCTGA+TGG | + | chr4_2:75089959-75089978 | Msa0622600:CDS | 45.0% | |
| TTCTTCCAATTTGAGGGCCT+GGG | - | chr4_2:75090202-75090221 | None:intergenic | 45.0% | |
| TTTCTTCCAATTTGAGGGCC+TGG | - | chr4_2:75090203-75090222 | None:intergenic | 45.0% | |
| ! | TGTGTCCTTGTAGAAGCACA+AGG | + | chr4_2:75090517-75090536 | Msa0622600:intron | 45.0% |
| ! | GTGTCCTTGTAGAAGCACAA+GGG | + | chr4_2:75090518-75090537 | Msa0622600:intron | 45.0% |
| ! | ATCTGGAGCACGATTTGAAG+TGG | - | chr4_2:75090894-75090913 | None:intergenic | 45.0% |
| TGCTAATTTGGACTGTAGGG+TGG | + | chr4_2:75091197-75091216 | Msa0622600:intron | 45.0% | |
| GGCCAAGGATTCTATTTGGT+TGG | + | chr4_2:75091218-75091237 | Msa0622600:CDS | 45.0% | |
| TTGGTTGGCAGTGATTCATC+TGG | + | chr4_2:75091233-75091252 | Msa0622600:CDS | 45.0% | |
| ! | TTTTCTTCATCAGGTCCCGT+TGG | + | chr4_2:75091446-75091465 | Msa0622600:intron | 45.0% |
| TTTCTTCATCAGGTCCCGTT+GGG | + | chr4_2:75091447-75091466 | Msa0622600:intron | 45.0% | |
| ! | GAGCTTTGTGACAAACCTCT+TGG | + | chr4_2:75091501-75091520 | Msa0622600:CDS | 45.0% |
| ! | GCAAACGAGGGTTTCCATTT+TGG | + | chr4_2:75091588-75091607 | Msa0622600:intron | 45.0% |
| !! | CTTGATGGCATCCCGATTTT+TGG | + | chr4_2:75091807-75091826 | Msa0622600:CDS | 45.0% |
| CAAAAGACCGCACCATTAGT+AGG | + | chr4_2:75092364-75092383 | Msa0622600:CDS | 45.0% | |
| CAAATCTAACGGTCTGCAGA+TGG | - | chr4_2:75092874-75092893 | None:intergenic | 45.0% | |
| CATCTGCAGACCGTTAGATT+TGG | + | chr4_2:75092872-75092891 | Msa0622600:three_prime_UTR | 45.0% | |
| GCATGCCGATGAATGCCAAT+TGG | + | chr4_2:75089707-75089726 | Msa0622600:CDS | 50.0% | |
| TTTACAGACACGGGTGGCTT+TGG | + | chr4_2:75089871-75089890 | Msa0622600:intron | 50.0% | |
| CTTTATGGAGGAGTAGGCAC+TGG | + | chr4_2:75089942-75089961 | Msa0622600:CDS | 50.0% | |
| TCTTCCAATTTGAGGGCCTG+GGG | - | chr4_2:75090201-75090220 | None:intergenic | 50.0% | |
| CAACATCCAGTGGATCTGAC+AGG | - | chr4_2:75090544-75090563 | None:intergenic | 50.0% | |
| GATCCACTGGATGTTGTTGC+AGG | + | chr4_2:75090548-75090567 | Msa0622600:CDS | 50.0% | |
| TCTCCTGCAACAACATCCAG+TGG | - | chr4_2:75090554-75090573 | None:intergenic | 50.0% | |
| !! | TATATGAGGGTGGACTGCAG+AGG | + | chr4_2:75090918-75090937 | Msa0622600:CDS | 50.0% |
| !! | ATATGAGGGTGGACTGCAGA+GGG | + | chr4_2:75090919-75090938 | Msa0622600:CDS | 50.0% |
| GGGTGGCCAAGGATTCTATT+TGG | + | chr4_2:75091214-75091233 | Msa0622600:intron | 50.0% | |
| ACTTCCACTTCTTGGGGAGT+AGG | - | chr4_2:75091302-75091321 | None:intergenic | 50.0% | |
| CACATCCATTAGCTCCCAAC+GGG | - | chr4_2:75091464-75091483 | None:intergenic | 50.0% | |
| GCACATCCATTAGCTCCCAA+CGG | - | chr4_2:75091465-75091484 | None:intergenic | 50.0% | |
| GGAGTGAAAATGGGGTCAAG+TGG | + | chr4_2:75092760-75092779 | Msa0622600:three_prime_UTR | 50.0% | |
| TCATCCCCAGGCCCTCAAAT+TGG | + | chr4_2:75090194-75090213 | Msa0622600:intron | 55.0% | |
| CAGGCCCTTGTGCTTCTACA+AGG | - | chr4_2:75090525-75090544 | None:intergenic | 55.0% | |
| TTTGGACTGTAGGGTGGCCA+AGG | + | chr4_2:75091203-75091222 | Msa0622600:intron | 55.0% | |
| CACACCTACTCCCCAAGAAG+TGG | + | chr4_2:75091295-75091314 | Msa0622600:CDS | 55.0% | |
| ! | GGGTGCCCTTTGTTTAGCCT+CGG | - | chr4_2:75092277-75092296 | None:intergenic | 55.0% |
| !! | AGGCTAAACAAAGGGCACCC+AGG | + | chr4_2:75092277-75092296 | Msa0622600:CDS | 55.0% |
| CTCGATCTCGAAGAGGTCCT+GGG | - | chr4_2:75092297-75092316 | None:intergenic | 55.0% | |
| TCTCGATCTCGAAGAGGTCC+TGG | - | chr4_2:75092298-75092317 | None:intergenic | 55.0% | |
| CAAGGGCCTGTCAGATCCAC+TGG | + | chr4_2:75090535-75090554 | Msa0622600:CDS | 60.0% | |
| CAGGTCCCGTTGGGAGCTAA+TGG | + | chr4_2:75091456-75091475 | Msa0622600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75088297 | 75093071 | 75088297 | ID=Msa0622600;Name=Msa0622600 |
| chr4_2 | mRNA | 75088297 | 75093071 | 75088297 | ID=Msa0622600-mRNA-1;Parent=Msa0622600;Name=Msa0622600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=438|1|1|1|0.92|0.86|15|373|500 |
| chr4_2 | exon | 75088297 | 75088673 | 75088297 | ID=Msa0622600-mRNA-1:exon:22782;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75088985 | 75089283 | 75088985 | ID=Msa0622600-mRNA-1:exon:22783;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75089397 | 75089476 | 75089397 | ID=Msa0622600-mRNA-1:exon:22784;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75089660 | 75089754 | 75089660 | ID=Msa0622600-mRNA-1:exon:22785;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75089878 | 75090000 | 75089878 | ID=Msa0622600-mRNA-1:exon:22786;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75090204 | 75090273 | 75090204 | ID=Msa0622600-mRNA-1:exon:22787;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75090530 | 75090616 | 75090530 | ID=Msa0622600-mRNA-1:exon:22788;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75090705 | 75090770 | 75090705 | ID=Msa0622600-mRNA-1:exon:22789;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75090881 | 75090973 | 75090881 | ID=Msa0622600-mRNA-1:exon:22790;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75091063 | 75091119 | 75091063 | ID=Msa0622600-mRNA-1:exon:22791;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75091215 | 75091343 | 75091215 | ID=Msa0622600-mRNA-1:exon:22792;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75091459 | 75091549 | 75091459 | ID=Msa0622600-mRNA-1:exon:22793;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75091787 | 75091875 | 75091787 | ID=Msa0622600-mRNA-1:exon:22794;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75092192 | 75092385 | 75092192 | ID=Msa0622600-mRNA-1:exon:22795;Parent=Msa0622600-mRNA-1 |
| chr4_2 | exon | 75092608 | 75093071 | 75092608 | ID=Msa0622600-mRNA-1:exon:22796;Parent=Msa0622600-mRNA-1 |
| chr4_2 | five_prime_UTR | 75088297 | 75088673 | 75088297 | ID=Msa0622600-mRNA-1:five_prime_utr;Parent=Msa0622600-mRNA-1 |
| chr4_2 | five_prime_UTR | 75088985 | 75089045 | 75088985 | ID=Msa0622600-mRNA-1:five_prime_utr;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75089046 | 75089283 | 75089046 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75089397 | 75089476 | 75089397 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75089660 | 75089754 | 75089660 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75089878 | 75090000 | 75089878 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75090204 | 75090273 | 75090204 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75090530 | 75090616 | 75090530 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75090705 | 75090770 | 75090705 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75090881 | 75090973 | 75090881 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75091063 | 75091119 | 75091063 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75091215 | 75091343 | 75091215 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75091459 | 75091549 | 75091459 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75091787 | 75091875 | 75091787 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75092192 | 75092385 | 75092192 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | CDS | 75092608 | 75092698 | 75092608 | ID=Msa0622600-mRNA-1:cds;Parent=Msa0622600-mRNA-1 |
| chr4_2 | three_prime_UTR | 75092699 | 75093071 | 75092699 | ID=Msa0622600-mRNA-1:three_prime_utr;Parent=Msa0622600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
