Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136010 | XP_013469976.2 | 89.362 | 94 | 10 | 0 | 1 | 94 | 1 | 94 | 2.65e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0136010 | A0A5N6QNR4 | 77.108 | 83 | 17 | 2 | 1 | 83 | 1 | 81 | 7.13e-25 | 100 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036560 | Msa0136010 | -0.806119 | 9.601629e-50 | -8.615850e-47 |
| Msa0083200 | Msa0136010 | -0.800978 | 1.118235e-48 | -8.615850e-47 |
| Msa0136010 | Msa0139280 | -0.805809 | 1.115577e-49 | -8.615850e-47 |
| Msa0136010 | Msa0176610 | -0.810910 | 9.111990e-51 | -8.615850e-47 |
| Msa0136010 | Msa0232170 | -0.807575 | 4.727030e-50 | -8.615850e-47 |
| Msa0136010 | Msa0294650 | -0.806445 | 8.197835e-50 | -8.615850e-47 |
| Msa0136010 | Msa0421690 | 0.808127 | 3.608660e-50 | -8.615850e-47 |
| Msa0136010 | Msa0559640 | -0.801632 | 8.217048e-49 | -8.615850e-47 |
| Msa0136010 | Msa0624890 | -0.802266 | 6.088269e-49 | -8.615850e-47 |
| Msa0136010 | Msa0641970 | -0.806842 | 6.758634e-50 | -8.615850e-47 |
| Msa0136010 | Msa0714230 | -0.815787 | 7.728919e-52 | -8.615850e-47 |
| Msa0136010 | Msa1044520 | -0.801367 | 9.309401e-49 | -8.615850e-47 |
| Msa0136010 | Msa1153260 | -0.800816 | 1.206800e-48 | -8.615850e-47 |
| Msa0136010 | Msa1251240 | 0.817847 | 2.666294e-52 | -8.615850e-47 |
| Msa0136010 | Msa1258600 | 0.817385 | 3.389390e-52 | -8.615850e-47 |
| Msa0136010 | Msa1264300 | -0.817127 | 3.874405e-52 | -8.615850e-47 |
| Msa0136010 | Msa1334350 | -0.814534 | 1.467377e-51 | -8.615850e-47 |
| Msa0136010 | Msa1344460 | 0.992365 | 7.434833e-193 | -8.615850e-47 |
| Msa0136010 | Msa1392650 | -0.830993 | 2.146750e-55 | -8.615850e-47 |
| Msa0136010 | Msa1400940 | 0.820607 | 6.273799e-53 | -8.615850e-47 |
| Msa0136010 | Msa1402340 | -0.815704 | 8.067370e-52 | -8.615850e-47 |
| Msa0136010 | Msa1412450 | -0.830166 | 3.422275e-55 | -8.615850e-47 |
| Msa0136010 | Msa1427900 | -0.830978 | 2.165613e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGCTAGCATCTGTATTT+TGG | 0.260628 | 1_3:+67801162 | Msa0136010:three_prime_UTR |
| ACAAATGAAATTTCTTATAA+AGG | 0.286353 | 1_3:-67801142 | None:intergenic |
| ACCGACCAATCCTGTGAATT+AGG | 0.346868 | 1_3:-67801093 | None:intergenic |
| TACCCGGCGCCGGAGACTTA+TGG | 0.351875 | 1_3:+67799337 | Msa0136010:CDS |
| GAGAAGAGAAAGTTGGAAAT+GGG | 0.352471 | 1_3:-67799094 | None:intergenic |
| CAGATCAAGCGGTGCGATCT+TGG | 0.367700 | 1_3:+67799672 | Msa0136010:CDS |
| AGACATTACTTTGCACAGAT+TGG | 0.375088 | 1_3:+67800927 | Msa0136010:CDS |
| CCACCTCGTCAGCAAAATTC+AGG | 0.380629 | 1_3:+67799487 | Msa0136010:CDS |
| ACAAGGTTACCCTCCACAAC+AGG | 0.383576 | 1_3:+67799393 | Msa0136010:CDS |
| GAATAGAGGATGGACCTTGC+TGG | 0.394206 | 1_3:-67799184 | None:intergenic |
| AGAGAAGAGAAAGTTGGAAA+TGG | 0.398970 | 1_3:-67799095 | None:intergenic |
| TCAAGGCTATCCTCCACAAC+AGG | 0.403285 | 1_3:+67799426 | Msa0136010:CDS |
| TGGTTGTAGTAACTCATTGT+GGG | 0.411137 | 1_3:-67799134 | None:intergenic |
| TCTCTGCTGTTGCTGTCTCT+TGG | 0.422721 | 1_3:+67800888 | Msa0136010:CDS |
| CAGCAAAATTCAGGCGGTGC+TGG | 0.441154 | 1_3:+67799496 | Msa0136010:CDS |
| TTTCCATAAGTCTCCGGCGC+CGG | 0.444590 | 1_3:-67799340 | None:intergenic |
| TTCCATAAGTCTCCGGCGCC+GGG | 0.453331 | 1_3:-67799339 | None:intergenic |
| AATAGAGGATGGACCTTGCT+GGG | 0.456352 | 1_3:-67799183 | None:intergenic |
| CGCCGACGGGCGGTTGCTGT+TGG | 0.456584 | 1_3:-67799154 | None:intergenic |
| TTTCGTACTGCCTAATTCAC+AGG | 0.460541 | 1_3:+67801083 | Msa0136010:three_prime_UTR |
| CATGGAATTAATAGGTTACC+CGG | 0.471275 | 1_3:+67799321 | Msa0136010:intron |
| GTGCTGGTTGCATGGAAGGC+TGG | 0.477733 | 1_3:+67799512 | Msa0136010:CDS |
| GGCGGTGCTGGTTGCATGGA+AGG | 0.485634 | 1_3:+67799508 | Msa0136010:CDS |
| TAGTGGAGAGAAGAGAAAGT+TGG | 0.493429 | 1_3:-67799101 | None:intergenic |
| TACTGCCTAATTCACAGGAT+TGG | 0.494829 | 1_3:+67801088 | Msa0136010:three_prime_UTR |
| TAACCTTGTGGAGGATATCC+TGG | 0.496681 | 1_3:-67799379 | None:intergenic |
| GAATTAGGCAGTACGAAAGT+TGG | 0.503589 | 1_3:-67801078 | None:intergenic |
| TTCAGGCGGTGCTGGTTGCA+TGG | 0.511069 | 1_3:+67799504 | Msa0136010:CDS |
| TGCTGGGGAGGAACGCCGAC+GGG | 0.513380 | 1_3:-67799167 | None:intergenic |
| AAGGTAACAAGCATCGCAAA+AGG | 0.524557 | 1_3:-67801123 | None:intergenic |
| GCCTAATTCACAGGATTGGT+CGG | 0.530936 | 1_3:+67801092 | Msa0136010:three_prime_UTR |
| GTTGTAGTAACTCATTGTGG+GGG | 0.541005 | 1_3:-67799132 | None:intergenic |
| TGCGGTGGGTAGCCCTGTTG+TGG | 0.549001 | 1_3:-67799439 | None:intergenic |
| GGTTGTAGTAACTCATTGTG+GGG | 0.550225 | 1_3:-67799133 | None:intergenic |
| AGAAGAGAAAGTTGGAAATG+GGG | 0.551961 | 1_3:-67799093 | None:intergenic |
| GAGGATGGACCTTGCTGGGG+AGG | 0.552104 | 1_3:-67799179 | None:intergenic |
| TTGCTGGGGAGGAACGCCGA+CGG | 0.554888 | 1_3:-67799168 | None:intergenic |
| TGTGGAGGATATCCTGGTGG+AGG | 0.557895 | 1_3:-67799373 | None:intergenic |
| TGAGGTGGATAGCCCTGTTG+TGG | 0.565061 | 1_3:-67799406 | None:intergenic |
| ATTAATAGGTTACCCGGCGC+CGG | 0.567543 | 1_3:+67799327 | Msa0136010:intron |
| GCGATCTTGGAATTGATCGC+TGG | 0.570477 | 1_3:+67799685 | Msa0136010:CDS |
| TTGGTTGTAGTAACTCATTG+TGG | 0.572996 | 1_3:-67799135 | None:intergenic |
| GTCGGCGTTCCTCCCCAGCA+AGG | 0.585619 | 1_3:+67799170 | Msa0136010:CDS |
| TGGGGAGGAACGCCGACGGG+CGG | 0.586625 | 1_3:-67799164 | None:intergenic |
| TTCCGCAAAACAAAACAGAT+CGG | 0.587583 | 1_3:+67799054 | None:intergenic |
| GGTGGATAGCCCTGTTGTGG+AGG | 0.592582 | 1_3:-67799403 | None:intergenic |
| TACTGAGGAGCATATTGCGG+TGG | 0.605867 | 1_3:-67799454 | None:intergenic |
| AACCAACAGCAACCGCCCGT+CGG | 0.612199 | 1_3:+67799152 | Msa0136010:CDS |
| TTGTAGTAACTCATTGTGGG+GGG | 0.615172 | 1_3:-67799131 | None:intergenic |
| GTGGAGGATATCCTGGTGGA+GGG | 0.625281 | 1_3:-67799372 | None:intergenic |
| GGATATTCATTCAGATCAAG+CGG | 0.635143 | 1_3:+67799661 | Msa0136010:intron |
| AAAGATGCTTACCCTCCACC+AGG | 0.636903 | 1_3:+67799361 | Msa0136010:CDS |
| CAACAGGGCTATCCACCTCA+AGG | 0.638659 | 1_3:+67799409 | Msa0136010:CDS |
| GGTGGTGGCTGAGCGTACTG+AGG | 0.643562 | 1_3:-67799469 | None:intergenic |
| ACTGAGGAGCATATTGCGGT+GGG | 0.646934 | 1_3:-67799453 | None:intergenic |
| ATCTTGGAATTGATCGCTGG+TGG | 0.649111 | 1_3:+67799688 | Msa0136010:CDS |
| TGTTGTGGAGGGTAACCTTG+TGG | 0.649835 | 1_3:-67799391 | None:intergenic |
| ATAGAGGATGGACCTTGCTG+GGG | 0.654237 | 1_3:-67799182 | None:intergenic |
| GTGGATAGCCCTGTTGTGGA+GGG | 0.654497 | 1_3:-67799402 | None:intergenic |
| CAAGGTTACCCTCCACAACA+GGG | 0.654753 | 1_3:+67799394 | Msa0136010:CDS |
| CCACCAGGATATCCTCCACA+AGG | 0.654889 | 1_3:+67799376 | Msa0136010:CDS |
| CAAGGCTATCCTCCACAACA+GGG | 0.660569 | 1_3:+67799427 | Msa0136010:CDS |
| GGTGGGTAGCCCTGTTGTGG+AGG | 0.665741 | 1_3:-67799436 | None:intergenic |
| GCGTACTGAGGAGCATATTG+CGG | 0.667195 | 1_3:-67799457 | None:intergenic |
| TGTTGTGGAGGATAGCCTTG+AGG | 0.680004 | 1_3:-67799424 | None:intergenic |
| TGTGGAGGATAGCCTTGAGG+TGG | 0.684209 | 1_3:-67799421 | None:intergenic |
| CCTCGTCAGCAAAATTCAGG+CGG | 0.710460 | 1_3:+67799490 | Msa0136010:CDS |
| CCTTGTGGAGGATATCCTGG+TGG | 0.714352 | 1_3:-67799376 | None:intergenic |
| TGTGGAGGGTAACCTTGTGG+AGG | 0.722140 | 1_3:-67799388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTCAATTTTAACTT+GGG | - | chr1_3:67799602-67799621 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTAACT+TGG | - | chr1_3:67799603-67799622 | None:intergenic | 10.0% |
| !! | AAATTGAAATTAAAATTGAA+TGG | + | chr1_3:67799608-67799627 | Msa0136010:intron | 10.0% |
| !!! | TTTAATTTCAATTTTAACTT+GGG | - | chr1_3:67799602-67799621 | None:intergenic | 10.0% |
| !!! | TTTTAATTTCAATTTTAACT+TGG | - | chr1_3:67799603-67799622 | None:intergenic | 10.0% |
| !! | AAATTGAAATTAAAATTGAA+TGG | + | chr1_3:67799608-67799627 | Msa0136010:intron | 10.0% |
| !!! | TTTTTCTTTCTTTATTTTTG+TGG | + | chr1_3:67799788-67799807 | Msa0136010:intron | 15.0% |
| !!! | TTTTCTTTCTTTATTTTTGT+GGG | + | chr1_3:67799789-67799808 | Msa0136010:intron | 15.0% |
| !!! | TTTTTAAAGCTTGTTAATTT+AGG | - | chr1_3:67799879-67799898 | None:intergenic | 15.0% |
| !!! | TAACAAGCTTTAAAAATTAA+AGG | + | chr1_3:67799883-67799902 | Msa0136010:intron | 15.0% |
| !! | AAAAGAATAAGAAACTAATA+AGG | - | chr1_3:67800727-67800746 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTCTTATTCTTT+TGG | + | chr1_3:67800726-67800745 | Msa0136010:intron | 15.0% |
| !! | ACAAATGAAATTTCTTATAA+AGG | - | chr1_3:67801145-67801164 | None:intergenic | 15.0% |
| !!! | TTTTTCTTTCTTTATTTTTG+TGG | + | chr1_3:67799788-67799807 | Msa0136010:intron | 15.0% |
| !!! | TTTTCTTTCTTTATTTTTGT+GGG | + | chr1_3:67799789-67799808 | Msa0136010:intron | 15.0% |
| !!! | TTTTTAAAGCTTGTTAATTT+AGG | - | chr1_3:67799879-67799898 | None:intergenic | 15.0% |
| !!! | TAACAAGCTTTAAAAATTAA+AGG | + | chr1_3:67799883-67799902 | Msa0136010:intron | 15.0% |
| !! | AAAAGAATAAGAAACTAATA+AGG | - | chr1_3:67800727-67800746 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTCTTATTCTTT+TGG | + | chr1_3:67800726-67800745 | Msa0136010:intron | 15.0% |
| !! | ACAAATGAAATTTCTTATAA+AGG | - | chr1_3:67801145-67801164 | None:intergenic | 15.0% |
| !! | AATTTGCAAACAGAAAATTA+AGG | - | chr1_3:67799572-67799591 | None:intergenic | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | - | chr1_3:67800007-67800026 | None:intergenic | 20.0% |
| !! | CTTAAAATATATAAGTCAAG+TGG | + | chr1_3:67800305-67800324 | Msa0136010:intron | 20.0% |
| !! | ACAATACTAGTATACTAAAA+AGG | + | chr1_3:67800431-67800450 | Msa0136010:intron | 20.0% |
| !! | TTGACAAACAGAAATTAATA+AGG | - | chr1_3:67800759-67800778 | None:intergenic | 20.0% |
| !! | TCAAAAACCTTATTAATTTC+TGG | + | chr1_3:67800775-67800794 | Msa0136010:intron | 20.0% |
| !! | AATTTGCAAACAGAAAATTA+AGG | - | chr1_3:67799572-67799591 | None:intergenic | 20.0% |
| !! | ATAGTGCAAATATTCTAAAT+AGG | - | chr1_3:67800007-67800026 | None:intergenic | 20.0% |
| !! | CTTAAAATATATAAGTCAAG+TGG | + | chr1_3:67800305-67800324 | Msa0136010:intron | 20.0% |
| !! | ACAATACTAGTATACTAAAA+AGG | + | chr1_3:67800431-67800450 | Msa0136010:intron | 20.0% |
| !! | TTGACAAACAGAAATTAATA+AGG | - | chr1_3:67800759-67800778 | None:intergenic | 20.0% |
| !! | TCAAAAACCTTATTAATTTC+TGG | + | chr1_3:67800775-67800794 | Msa0136010:intron | 20.0% |
| ! | GTGTATAATATATATGCATG+CGG | - | chr1_3:67799214-67799233 | None:intergenic | 25.0% |
| ! | AAGATGATAAATTAACATGC+AGG | - | chr1_3:67799249-67799268 | None:intergenic | 25.0% |
| ! | GTTTCAATTAAGTGATTTCA+TGG | + | chr1_3:67799303-67799322 | Msa0136010:intron | 25.0% |
| ! | AGTGATTTCATGGAATTAAT+AGG | + | chr1_3:67799313-67799332 | Msa0136010:intron | 25.0% |
| ! | AAATGAAATGAACGTGATTA+TGG | + | chr1_3:67799637-67799656 | Msa0136010:intron | 25.0% |
| ! | TAAGATAGTAGTATGTAGAT+TGG | - | chr1_3:67799834-67799853 | None:intergenic | 25.0% |
| !!! | AGTAGGTTGGTTTTAATTTT+AGG | - | chr1_3:67799924-67799943 | None:intergenic | 25.0% |
| ! | ATTGTTTATAGTTGTTGAGT+AGG | - | chr1_3:67799941-67799960 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr1_3:67799993-67800012 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr1_3:67799994-67800013 | None:intergenic | 25.0% |
| ! | AAAATATATAAGTCAAGTGG+AGG | + | chr1_3:67800308-67800327 | Msa0136010:intron | 25.0% |
| ! | AAATATATAAGTCAAGTGGA+GGG | + | chr1_3:67800309-67800328 | Msa0136010:intron | 25.0% |
| ! | AAAGAACAAAGATAAACGTA+TGG | - | chr1_3:67800586-67800605 | None:intergenic | 25.0% |
| !! | TTGCATTAATATGCATTTTG+AGG | - | chr1_3:67800615-67800634 | None:intergenic | 25.0% |
| ! | AATGCAAATGTAACAATTCT+TGG | + | chr1_3:67800628-67800647 | Msa0136010:intron | 25.0% |
| ! | CAGAAAACCAGAAATTAATA+AGG | - | chr1_3:67800785-67800804 | None:intergenic | 25.0% |
| ! | GTGTATAATATATATGCATG+CGG | - | chr1_3:67799214-67799233 | None:intergenic | 25.0% |
| ! | AAGATGATAAATTAACATGC+AGG | - | chr1_3:67799249-67799268 | None:intergenic | 25.0% |
| ! | GTTTCAATTAAGTGATTTCA+TGG | + | chr1_3:67799303-67799322 | Msa0136010:intron | 25.0% |
| ! | AGTGATTTCATGGAATTAAT+AGG | + | chr1_3:67799313-67799332 | Msa0136010:intron | 25.0% |
| ! | AAATGAAATGAACGTGATTA+TGG | + | chr1_3:67799637-67799656 | Msa0136010:intron | 25.0% |
| ! | TAAGATAGTAGTATGTAGAT+TGG | - | chr1_3:67799834-67799853 | None:intergenic | 25.0% |
| !!! | AGTAGGTTGGTTTTAATTTT+AGG | - | chr1_3:67799924-67799943 | None:intergenic | 25.0% |
| ! | ATTGTTTATAGTTGTTGAGT+AGG | - | chr1_3:67799941-67799960 | None:intergenic | 25.0% |
| ! | CTAAATAGGTCAAGTAATAT+GGG | - | chr1_3:67799993-67800012 | None:intergenic | 25.0% |
| ! | TCTAAATAGGTCAAGTAATA+TGG | - | chr1_3:67799994-67800013 | None:intergenic | 25.0% |
| ! | AAAATATATAAGTCAAGTGG+AGG | + | chr1_3:67800308-67800327 | Msa0136010:intron | 25.0% |
| ! | AAATATATAAGTCAAGTGGA+GGG | + | chr1_3:67800309-67800328 | Msa0136010:intron | 25.0% |
| ! | AAAGAACAAAGATAAACGTA+TGG | - | chr1_3:67800586-67800605 | None:intergenic | 25.0% |
| !! | TTGCATTAATATGCATTTTG+AGG | - | chr1_3:67800615-67800634 | None:intergenic | 25.0% |
| ! | AATGCAAATGTAACAATTCT+TGG | + | chr1_3:67800628-67800647 | Msa0136010:intron | 25.0% |
| ! | CAGAAAACCAGAAATTAATA+AGG | - | chr1_3:67800785-67800804 | None:intergenic | 25.0% |
| ATAACGTGACGAAAGATAAT+AGG | - | chr1_3:67799747-67799766 | None:intergenic | 30.0% | |
| ATTGGTATATCCGATGATAT+GGG | - | chr1_3:67799816-67799835 | None:intergenic | 30.0% | |
| TTTATAGTTGTTGAGTAGGT+TGG | - | chr1_3:67799937-67799956 | None:intergenic | 30.0% | |
| AGAAAAATAGAGTCAAAGCA+TGG | - | chr1_3:67800037-67800056 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr1_3:67800206-67800225 | Msa0136010:intron | 30.0% | |
| AATATATAAGTCAAGTGGAG+GGG | + | chr1_3:67800310-67800329 | Msa0136010:intron | 30.0% | |
| ! | GACAATATACCATTTCTAGA+TGG | - | chr1_3:67800386-67800405 | None:intergenic | 30.0% |
| ! | TGGTATATTGTCTTGTTCAA+CGG | + | chr1_3:67800394-67800413 | Msa0136010:intron | 30.0% |
| CTAGTATACTAAAAAGGTGA+AGG | + | chr1_3:67800437-67800456 | Msa0136010:intron | 30.0% | |
| ! | CGTTTATCTTTGTTCTTTTG+TGG | + | chr1_3:67800588-67800607 | Msa0136010:intron | 30.0% |
| TTTGTATAACTGGAAATAGG+TGG | - | chr1_3:67800691-67800710 | None:intergenic | 30.0% | |
| GTGTTTGTATAACTGGAAAT+AGG | - | chr1_3:67800694-67800713 | None:intergenic | 30.0% | |
| ATAACGTGACGAAAGATAAT+AGG | - | chr1_3:67799747-67799766 | None:intergenic | 30.0% | |
| ATTGGTATATCCGATGATAT+GGG | - | chr1_3:67799816-67799835 | None:intergenic | 30.0% | |
| TTTATAGTTGTTGAGTAGGT+TGG | - | chr1_3:67799937-67799956 | None:intergenic | 30.0% | |
| AGAAAAATAGAGTCAAAGCA+TGG | - | chr1_3:67800037-67800056 | None:intergenic | 30.0% | |
| TCAACTAGGTCAAGTAATAT+GGG | + | chr1_3:67800206-67800225 | Msa0136010:intron | 30.0% | |
| AATATATAAGTCAAGTGGAG+GGG | + | chr1_3:67800310-67800329 | Msa0136010:intron | 30.0% | |
| ! | GACAATATACCATTTCTAGA+TGG | - | chr1_3:67800386-67800405 | None:intergenic | 30.0% |
| ! | TGGTATATTGTCTTGTTCAA+CGG | + | chr1_3:67800394-67800413 | Msa0136010:intron | 30.0% |
| CTAGTATACTAAAAAGGTGA+AGG | + | chr1_3:67800437-67800456 | Msa0136010:intron | 30.0% | |
| ! | CGTTTATCTTTGTTCTTTTG+TGG | + | chr1_3:67800588-67800607 | Msa0136010:intron | 30.0% |
| TTTGTATAACTGGAAATAGG+TGG | - | chr1_3:67800691-67800710 | None:intergenic | 30.0% | |
| GTGTTTGTATAACTGGAAAT+AGG | - | chr1_3:67800694-67800713 | None:intergenic | 30.0% | |
| AGAAGAGAAAGTTGGAAATG+GGG | - | chr1_3:67799096-67799115 | None:intergenic | 35.0% | |
| GAGAAGAGAAAGTTGGAAAT+GGG | - | chr1_3:67799097-67799116 | None:intergenic | 35.0% | |
| AGAGAAGAGAAAGTTGGAAA+TGG | - | chr1_3:67799098-67799117 | None:intergenic | 35.0% | |
| TGGTTGTAGTAACTCATTGT+GGG | - | chr1_3:67799137-67799156 | None:intergenic | 35.0% | |
| TTGGTTGTAGTAACTCATTG+TGG | - | chr1_3:67799138-67799157 | None:intergenic | 35.0% | |
| CATGGAATTAATAGGTTACC+CGG | + | chr1_3:67799321-67799340 | Msa0136010:intron | 35.0% | |
| TAAGGAACAATCCAGAAAGA+TGG | - | chr1_3:67799554-67799573 | None:intergenic | 35.0% | |
| TGAAATGAACGTGATTATGG+AGG | + | chr1_3:67799640-67799659 | Msa0136010:intron | 35.0% | |
| GGATATTCATTCAGATCAAG+CGG | + | chr1_3:67799661-67799680 | Msa0136010:intron | 35.0% | |
| GATTGGTATATCCGATGATA+TGG | - | chr1_3:67799817-67799836 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr1_3:67799989-67800008 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr1_3:67800205-67800224 | Msa0136010:intron | 35.0% | |
| ATATATAAGTCAAGTGGAGG+GGG | + | chr1_3:67800311-67800330 | Msa0136010:intron | 35.0% | |
| ! | TAAAAAGGTGAAGGTGTATG+TGG | + | chr1_3:67800446-67800465 | Msa0136010:intron | 35.0% |
| TACGTGTGTGTTTGTATAAC+TGG | - | chr1_3:67800701-67800720 | None:intergenic | 35.0% | |
| CAGATCAGATTACATCACAT+TGG | - | chr1_3:67800834-67800853 | None:intergenic | 35.0% | |
| AGACATTACTTTGCACAGAT+TGG | + | chr1_3:67800927-67800946 | Msa0136010:CDS | 35.0% | |
| ! | TGTTGCTAGCATCTGTATTT+TGG | + | chr1_3:67801162-67801181 | Msa0136010:three_prime_UTR | 35.0% |
| AGAAGAGAAAGTTGGAAATG+GGG | - | chr1_3:67799096-67799115 | None:intergenic | 35.0% | |
| GAGAAGAGAAAGTTGGAAAT+GGG | - | chr1_3:67799097-67799116 | None:intergenic | 35.0% | |
| AGAGAAGAGAAAGTTGGAAA+TGG | - | chr1_3:67799098-67799117 | None:intergenic | 35.0% | |
| TGGTTGTAGTAACTCATTGT+GGG | - | chr1_3:67799137-67799156 | None:intergenic | 35.0% | |
| TTGGTTGTAGTAACTCATTG+TGG | - | chr1_3:67799138-67799157 | None:intergenic | 35.0% | |
| CATGGAATTAATAGGTTACC+CGG | + | chr1_3:67799321-67799340 | Msa0136010:intron | 35.0% | |
| TAAGGAACAATCCAGAAAGA+TGG | - | chr1_3:67799554-67799573 | None:intergenic | 35.0% | |
| TGAAATGAACGTGATTATGG+AGG | + | chr1_3:67799640-67799659 | Msa0136010:intron | 35.0% | |
| GGATATTCATTCAGATCAAG+CGG | + | chr1_3:67799661-67799680 | Msa0136010:intron | 35.0% | |
| GATTGGTATATCCGATGATA+TGG | - | chr1_3:67799817-67799836 | None:intergenic | 35.0% | |
| ATAGGTCAAGTAATATGGGA+CGG | - | chr1_3:67799989-67800008 | None:intergenic | 35.0% | |
| GTCAACTAGGTCAAGTAATA+TGG | + | chr1_3:67800205-67800224 | Msa0136010:intron | 35.0% | |
| ATATATAAGTCAAGTGGAGG+GGG | + | chr1_3:67800311-67800330 | Msa0136010:intron | 35.0% | |
| ! | TAAAAAGGTGAAGGTGTATG+TGG | + | chr1_3:67800446-67800465 | Msa0136010:intron | 35.0% |
| TACGTGTGTGTTTGTATAAC+TGG | - | chr1_3:67800701-67800720 | None:intergenic | 35.0% | |
| CAGATCAGATTACATCACAT+TGG | - | chr1_3:67800834-67800853 | None:intergenic | 35.0% | |
| AGACATTACTTTGCACAGAT+TGG | + | chr1_3:67800927-67800946 | Msa0136010:CDS | 35.0% | |
| ! | TGTTGCTAGCATCTGTATTT+TGG | + | chr1_3:67801162-67801181 | Msa0136010:three_prime_UTR | 35.0% |
| TAGTGGAGAGAAGAGAAAGT+TGG | - | chr1_3:67799104-67799123 | None:intergenic | 40.0% | |
| TTGTAGTAACTCATTGTGGG+GGG | - | chr1_3:67799134-67799153 | None:intergenic | 40.0% | |
| GTTGTAGTAACTCATTGTGG+GGG | - | chr1_3:67799135-67799154 | None:intergenic | 40.0% | |
| GGTTGTAGTAACTCATTGTG+GGG | - | chr1_3:67799136-67799155 | None:intergenic | 40.0% | |
| ATGCGGTTAAGAATAGAGGA+TGG | - | chr1_3:67799197-67799216 | None:intergenic | 40.0% | |
| ATGCATGCGGTTAAGAATAG+AGG | - | chr1_3:67799201-67799220 | None:intergenic | 40.0% | |
| ! | GCATCTTTTCCATAAGTCTC+CGG | - | chr1_3:67799349-67799368 | None:intergenic | 40.0% |
| ! | TTTTGTGGGACCCATATCAT+CGG | + | chr1_3:67799803-67799822 | Msa0136010:intron | 40.0% |
| CTAGGTCAAGTAATATGGGT+CGG | + | chr1_3:67800210-67800229 | Msa0136010:intron | 40.0% | |
| TAATGATGTCAATGACGTGC+AGG | + | chr1_3:67800354-67800373 | Msa0136010:intron | 40.0% | |
| AATGATGTCAATGACGTGCA+GGG | + | chr1_3:67800355-67800374 | Msa0136010:intron | 40.0% | |
| AGGGTTTAGCCATCTAGAAA+TGG | + | chr1_3:67800374-67800393 | Msa0136010:intron | 40.0% | |
| GAATTAGGCAGTACGAAAGT+TGG | - | chr1_3:67801081-67801100 | None:intergenic | 40.0% | |
| TTTCGTACTGCCTAATTCAC+AGG | + | chr1_3:67801083-67801102 | Msa0136010:three_prime_UTR | 40.0% | |
| TACTGCCTAATTCACAGGAT+TGG | + | chr1_3:67801088-67801107 | Msa0136010:three_prime_UTR | 40.0% | |
| ! | AAGGTAACAAGCATCGCAAA+AGG | - | chr1_3:67801126-67801145 | None:intergenic | 40.0% |
| TAGTGGAGAGAAGAGAAAGT+TGG | - | chr1_3:67799104-67799123 | None:intergenic | 40.0% | |
| TTGTAGTAACTCATTGTGGG+GGG | - | chr1_3:67799134-67799153 | None:intergenic | 40.0% | |
| GTTGTAGTAACTCATTGTGG+GGG | - | chr1_3:67799135-67799154 | None:intergenic | 40.0% | |
| GGTTGTAGTAACTCATTGTG+GGG | - | chr1_3:67799136-67799155 | None:intergenic | 40.0% | |
| ATGCGGTTAAGAATAGAGGA+TGG | - | chr1_3:67799197-67799216 | None:intergenic | 40.0% | |
| ATGCATGCGGTTAAGAATAG+AGG | - | chr1_3:67799201-67799220 | None:intergenic | 40.0% | |
| ! | GCATCTTTTCCATAAGTCTC+CGG | - | chr1_3:67799349-67799368 | None:intergenic | 40.0% |
| ! | TTTTGTGGGACCCATATCAT+CGG | + | chr1_3:67799803-67799822 | Msa0136010:intron | 40.0% |
| CTAGGTCAAGTAATATGGGT+CGG | + | chr1_3:67800210-67800229 | Msa0136010:intron | 40.0% | |
| TAATGATGTCAATGACGTGC+AGG | + | chr1_3:67800354-67800373 | Msa0136010:intron | 40.0% | |
| AATGATGTCAATGACGTGCA+GGG | + | chr1_3:67800355-67800374 | Msa0136010:intron | 40.0% | |
| AGGGTTTAGCCATCTAGAAA+TGG | + | chr1_3:67800374-67800393 | Msa0136010:intron | 40.0% | |
| GAATTAGGCAGTACGAAAGT+TGG | - | chr1_3:67801081-67801100 | None:intergenic | 40.0% | |
| TTTCGTACTGCCTAATTCAC+AGG | + | chr1_3:67801083-67801102 | Msa0136010:three_prime_UTR | 40.0% | |
| TACTGCCTAATTCACAGGAT+TGG | + | chr1_3:67801088-67801107 | Msa0136010:three_prime_UTR | 40.0% | |
| ! | AAGGTAACAAGCATCGCAAA+AGG | - | chr1_3:67801126-67801145 | None:intergenic | 40.0% |
| AATAGAGGATGGACCTTGCT+GGG | - | chr1_3:67799186-67799205 | None:intergenic | 45.0% | |
| TAACCTTGTGGAGGATATCC+TGG | - | chr1_3:67799382-67799401 | None:intergenic | 45.0% | |
| TACTCCTCTCTCCATCTTTC+TGG | + | chr1_3:67799540-67799559 | Msa0136010:intron | 45.0% | |
| CAATCCAGAAAGATGGAGAG+AGG | - | chr1_3:67799547-67799566 | None:intergenic | 45.0% | |
| ATCTTGGAATTGATCGCTGG+TGG | + | chr1_3:67799688-67799707 | Msa0136010:CDS | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr1_3:67799985-67800004 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr1_3:67800192-67800211 | Msa0136010:intron | 45.0% | |
| GTCAAGTAATATGGGTCGGA+GGG | + | chr1_3:67800214-67800233 | Msa0136010:intron | 45.0% | |
| ! | GCCTAATTCACAGGATTGGT+CGG | + | chr1_3:67801092-67801111 | Msa0136010:three_prime_UTR | 45.0% |
| ACCGACCAATCCTGTGAATT+AGG | - | chr1_3:67801096-67801115 | None:intergenic | 45.0% | |
| AATAGAGGATGGACCTTGCT+GGG | - | chr1_3:67799186-67799205 | None:intergenic | 45.0% | |
| TAACCTTGTGGAGGATATCC+TGG | - | chr1_3:67799382-67799401 | None:intergenic | 45.0% | |
| TACTCCTCTCTCCATCTTTC+TGG | + | chr1_3:67799540-67799559 | Msa0136010:intron | 45.0% | |
| CAATCCAGAAAGATGGAGAG+AGG | - | chr1_3:67799547-67799566 | None:intergenic | 45.0% | |
| ATCTTGGAATTGATCGCTGG+TGG | + | chr1_3:67799688-67799707 | Msa0136010:CDS | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | - | chr1_3:67799985-67800004 | None:intergenic | 45.0% | |
| CATACGTGACAGAGTCAACT+AGG | + | chr1_3:67800192-67800211 | Msa0136010:intron | 45.0% | |
| GTCAAGTAATATGGGTCGGA+GGG | + | chr1_3:67800214-67800233 | Msa0136010:intron | 45.0% | |
| ! | GCCTAATTCACAGGATTGGT+CGG | + | chr1_3:67801092-67801111 | Msa0136010:three_prime_UTR | 45.0% |
| ACCGACCAATCCTGTGAATT+AGG | - | chr1_3:67801096-67801115 | None:intergenic | 45.0% | |
| !! | AATTGATATAAAATTAAAAA+AGG | - | chr1_3:67800493-67800512 | None:intergenic | 5.0% |
| !! | AATTGATATAAAATTAAAAA+AGG | - | chr1_3:67800493-67800512 | None:intergenic | 5.0% |
| TAACTCATTGTGGGGGGTAG+GGG | - | chr1_3:67799128-67799147 | None:intergenic | 50.0% | |
| GTAACTCATTGTGGGGGGTA+GGG | - | chr1_3:67799129-67799148 | None:intergenic | 50.0% | |
| AGTAACTCATTGTGGGGGGT+AGG | - | chr1_3:67799130-67799149 | None:intergenic | 50.0% | |
| ATAGAGGATGGACCTTGCTG+GGG | - | chr1_3:67799185-67799204 | None:intergenic | 50.0% | |
| GAATAGAGGATGGACCTTGC+TGG | - | chr1_3:67799187-67799206 | None:intergenic | 50.0% | |
| ATTAATAGGTTACCCGGCGC+CGG | + | chr1_3:67799327-67799346 | Msa0136010:intron | 50.0% | |
| AAAGATGCTTACCCTCCACC+AGG | + | chr1_3:67799361-67799380 | Msa0136010:CDS | 50.0% | |
| TGTTGTGGAGGGTAACCTTG+TGG | - | chr1_3:67799394-67799413 | None:intergenic | 50.0% | |
| ACAAGGTTACCCTCCACAAC+AGG | + | chr1_3:67799393-67799412 | Msa0136010:CDS | 50.0% | |
| CAAGGTTACCCTCCACAACA+GGG | + | chr1_3:67799394-67799413 | Msa0136010:CDS | 50.0% | |
| ! | TGTTGTGGAGGATAGCCTTG+AGG | - | chr1_3:67799427-67799446 | None:intergenic | 50.0% |
| TCAAGGCTATCCTCCACAAC+AGG | + | chr1_3:67799426-67799445 | Msa0136010:CDS | 50.0% | |
| CAAGGCTATCCTCCACAACA+GGG | + | chr1_3:67799427-67799446 | Msa0136010:CDS | 50.0% | |
| ! | ACTGAGGAGCATATTGCGGT+GGG | - | chr1_3:67799456-67799475 | None:intergenic | 50.0% |
| ! | TACTGAGGAGCATATTGCGG+TGG | - | chr1_3:67799457-67799476 | None:intergenic | 50.0% |
| ! | GCGTACTGAGGAGCATATTG+CGG | - | chr1_3:67799460-67799479 | None:intergenic | 50.0% |
| ! | GAATTTTGCTGACGAGGTGG+TGG | - | chr1_3:67799487-67799506 | None:intergenic | 50.0% |
| ! | CCTGAATTTTGCTGACGAGG+TGG | - | chr1_3:67799490-67799509 | None:intergenic | 50.0% |
| CCACCTCGTCAGCAAAATTC+AGG | + | chr1_3:67799487-67799506 | Msa0136010:CDS | 50.0% | |
| CCTCGTCAGCAAAATTCAGG+CGG | + | chr1_3:67799490-67799509 | Msa0136010:CDS | 50.0% | |
| GCGATCTTGGAATTGATCGC+TGG | + | chr1_3:67799685-67799704 | Msa0136010:CDS | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr1_3:67799986-67800005 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGTCGG+AGG | + | chr1_3:67800213-67800232 | Msa0136010:intron | 50.0% | |
| TATAAGTCAAGTGGAGGGGG+TGG | + | chr1_3:67800314-67800333 | Msa0136010:intron | 50.0% | |
| ATAAGTCAAGTGGAGGGGGT+GGG | + | chr1_3:67800315-67800334 | Msa0136010:intron | 50.0% | |
| TCTCTGCTGTTGCTGTCTCT+TGG | + | chr1_3:67800888-67800907 | Msa0136010:CDS | 50.0% | |
| ! | CTCTTGGATGCGTGCTTTTG+AGG | + | chr1_3:67800904-67800923 | Msa0136010:CDS | 50.0% |
| TAACTCATTGTGGGGGGTAG+GGG | - | chr1_3:67799128-67799147 | None:intergenic | 50.0% | |
| GTAACTCATTGTGGGGGGTA+GGG | - | chr1_3:67799129-67799148 | None:intergenic | 50.0% | |
| AGTAACTCATTGTGGGGGGT+AGG | - | chr1_3:67799130-67799149 | None:intergenic | 50.0% | |
| ATAGAGGATGGACCTTGCTG+GGG | - | chr1_3:67799185-67799204 | None:intergenic | 50.0% | |
| GAATAGAGGATGGACCTTGC+TGG | - | chr1_3:67799187-67799206 | None:intergenic | 50.0% | |
| ATTAATAGGTTACCCGGCGC+CGG | + | chr1_3:67799327-67799346 | Msa0136010:intron | 50.0% | |
| AAAGATGCTTACCCTCCACC+AGG | + | chr1_3:67799361-67799380 | Msa0136010:CDS | 50.0% | |
| TGTTGTGGAGGGTAACCTTG+TGG | - | chr1_3:67799394-67799413 | None:intergenic | 50.0% | |
| ACAAGGTTACCCTCCACAAC+AGG | + | chr1_3:67799393-67799412 | Msa0136010:CDS | 50.0% | |
| CAAGGTTACCCTCCACAACA+GGG | + | chr1_3:67799394-67799413 | Msa0136010:CDS | 50.0% | |
| ! | TGTTGTGGAGGATAGCCTTG+AGG | - | chr1_3:67799427-67799446 | None:intergenic | 50.0% |
| TCAAGGCTATCCTCCACAAC+AGG | + | chr1_3:67799426-67799445 | Msa0136010:CDS | 50.0% | |
| CAAGGCTATCCTCCACAACA+GGG | + | chr1_3:67799427-67799446 | Msa0136010:CDS | 50.0% | |
| ! | ACTGAGGAGCATATTGCGGT+GGG | - | chr1_3:67799456-67799475 | None:intergenic | 50.0% |
| ! | TACTGAGGAGCATATTGCGG+TGG | - | chr1_3:67799457-67799476 | None:intergenic | 50.0% |
| ! | GCGTACTGAGGAGCATATTG+CGG | - | chr1_3:67799460-67799479 | None:intergenic | 50.0% |
| ! | GAATTTTGCTGACGAGGTGG+TGG | - | chr1_3:67799487-67799506 | None:intergenic | 50.0% |
| ! | CCTGAATTTTGCTGACGAGG+TGG | - | chr1_3:67799490-67799509 | None:intergenic | 50.0% |
| CCACCTCGTCAGCAAAATTC+AGG | + | chr1_3:67799487-67799506 | Msa0136010:CDS | 50.0% | |
| CCTCGTCAGCAAAATTCAGG+CGG | + | chr1_3:67799490-67799509 | Msa0136010:CDS | 50.0% | |
| GCGATCTTGGAATTGATCGC+TGG | + | chr1_3:67799685-67799704 | Msa0136010:CDS | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | - | chr1_3:67799986-67800005 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGTCGG+AGG | + | chr1_3:67800213-67800232 | Msa0136010:intron | 50.0% | |
| TATAAGTCAAGTGGAGGGGG+TGG | + | chr1_3:67800314-67800333 | Msa0136010:intron | 50.0% | |
| ATAAGTCAAGTGGAGGGGGT+GGG | + | chr1_3:67800315-67800334 | Msa0136010:intron | 50.0% | |
| TCTCTGCTGTTGCTGTCTCT+TGG | + | chr1_3:67800888-67800907 | Msa0136010:CDS | 50.0% | |
| ! | CTCTTGGATGCGTGCTTTTG+AGG | + | chr1_3:67800904-67800923 | Msa0136010:CDS | 50.0% |
| AACTCATTGTGGGGGGTAGG+GGG | - | chr1_3:67799127-67799146 | None:intergenic | 55.0% | |
| TTTCCATAAGTCTCCGGCGC+CGG | - | chr1_3:67799343-67799362 | None:intergenic | 55.0% | |
| GTGGAGGATATCCTGGTGGA+GGG | - | chr1_3:67799375-67799394 | None:intergenic | 55.0% | |
| TGTGGAGGATATCCTGGTGG+AGG | - | chr1_3:67799376-67799395 | None:intergenic | 55.0% | |
| CCTTGTGGAGGATATCCTGG+TGG | - | chr1_3:67799379-67799398 | None:intergenic | 55.0% | |
| CCACCAGGATATCCTCCACA+AGG | + | chr1_3:67799376-67799395 | Msa0136010:CDS | 55.0% | |
| TGTGGAGGGTAACCTTGTGG+AGG | - | chr1_3:67799391-67799410 | None:intergenic | 55.0% | |
| GTGGATAGCCCTGTTGTGGA+GGG | - | chr1_3:67799405-67799424 | None:intergenic | 55.0% | |
| TGAGGTGGATAGCCCTGTTG+TGG | - | chr1_3:67799409-67799428 | None:intergenic | 55.0% | |
| CAACAGGGCTATCCACCTCA+AGG | + | chr1_3:67799409-67799428 | Msa0136010:CDS | 55.0% | |
| ! | TGTGGAGGATAGCCTTGAGG+TGG | - | chr1_3:67799424-67799443 | None:intergenic | 55.0% |
| ! | CCGCCTGAATTTTGCTGACG+AGG | - | chr1_3:67799493-67799512 | None:intergenic | 55.0% |
| CAGCAAAATTCAGGCGGTGC+TGG | + | chr1_3:67799496-67799515 | Msa0136010:CDS | 55.0% | |
| CAGATCAAGCGGTGCGATCT+TGG | + | chr1_3:67799672-67799691 | Msa0136010:CDS | 55.0% | |
| AACTCATTGTGGGGGGTAGG+GGG | - | chr1_3:67799127-67799146 | None:intergenic | 55.0% | |
| TTTCCATAAGTCTCCGGCGC+CGG | - | chr1_3:67799343-67799362 | None:intergenic | 55.0% | |
| GTGGAGGATATCCTGGTGGA+GGG | - | chr1_3:67799375-67799394 | None:intergenic | 55.0% | |
| TGTGGAGGATATCCTGGTGG+AGG | - | chr1_3:67799376-67799395 | None:intergenic | 55.0% | |
| CCTTGTGGAGGATATCCTGG+TGG | - | chr1_3:67799379-67799398 | None:intergenic | 55.0% | |
| CCACCAGGATATCCTCCACA+AGG | + | chr1_3:67799376-67799395 | Msa0136010:CDS | 55.0% | |
| TGTGGAGGGTAACCTTGTGG+AGG | - | chr1_3:67799391-67799410 | None:intergenic | 55.0% | |
| GTGGATAGCCCTGTTGTGGA+GGG | - | chr1_3:67799405-67799424 | None:intergenic | 55.0% | |
| TGAGGTGGATAGCCCTGTTG+TGG | - | chr1_3:67799409-67799428 | None:intergenic | 55.0% | |
| CAACAGGGCTATCCACCTCA+AGG | + | chr1_3:67799409-67799428 | Msa0136010:CDS | 55.0% | |
| ! | TGTGGAGGATAGCCTTGAGG+TGG | - | chr1_3:67799424-67799443 | None:intergenic | 55.0% |
| ! | CCGCCTGAATTTTGCTGACG+AGG | - | chr1_3:67799493-67799512 | None:intergenic | 55.0% |
| CAGCAAAATTCAGGCGGTGC+TGG | + | chr1_3:67799496-67799515 | Msa0136010:CDS | 55.0% | |
| CAGATCAAGCGGTGCGATCT+TGG | + | chr1_3:67799672-67799691 | Msa0136010:CDS | 55.0% | |
| AACCAACAGCAACCGCCCGT+CGG | + | chr1_3:67799152-67799171 | Msa0136010:CDS | 60.0% | |
| TTCCATAAGTCTCCGGCGCC+GGG | - | chr1_3:67799342-67799361 | None:intergenic | 60.0% | |
| GGTGGATAGCCCTGTTGTGG+AGG | - | chr1_3:67799406-67799425 | None:intergenic | 60.0% | |
| !! | TTCAGGCGGTGCTGGTTGCA+TGG | + | chr1_3:67799504-67799523 | Msa0136010:CDS | 60.0% |
| !! | GTGCTGGTTGCATGGAAGGC+TGG | + | chr1_3:67799512-67799531 | Msa0136010:CDS | 60.0% |
| AACCAACAGCAACCGCCCGT+CGG | + | chr1_3:67799152-67799171 | Msa0136010:CDS | 60.0% | |
| TTCCATAAGTCTCCGGCGCC+GGG | - | chr1_3:67799342-67799361 | None:intergenic | 60.0% | |
| GGTGGATAGCCCTGTTGTGG+AGG | - | chr1_3:67799406-67799425 | None:intergenic | 60.0% | |
| !! | TTCAGGCGGTGCTGGTTGCA+TGG | + | chr1_3:67799504-67799523 | Msa0136010:CDS | 60.0% |
| !! | GTGCTGGTTGCATGGAAGGC+TGG | + | chr1_3:67799512-67799531 | Msa0136010:CDS | 60.0% |
| TTGTGGGGGGTAGGGGGTAG+TGG | - | chr1_3:67799121-67799140 | None:intergenic | 65.0% | |
| TTGCTGGGGAGGAACGCCGA+CGG | - | chr1_3:67799171-67799190 | None:intergenic | 65.0% | |
| GAGGATGGACCTTGCTGGGG+AGG | - | chr1_3:67799182-67799201 | None:intergenic | 65.0% | |
| ! | TACCCGGCGCCGGAGACTTA+TGG | + | chr1_3:67799337-67799356 | Msa0136010:CDS | 65.0% |
| GGTGGGTAGCCCTGTTGTGG+AGG | - | chr1_3:67799439-67799458 | None:intergenic | 65.0% | |
| TGCGGTGGGTAGCCCTGTTG+TGG | - | chr1_3:67799442-67799461 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGAGCGTACTG+AGG | - | chr1_3:67799472-67799491 | None:intergenic | 65.0% |
| !! | GGCGGTGCTGGTTGCATGGA+AGG | + | chr1_3:67799508-67799527 | Msa0136010:CDS | 65.0% |
| TTGTGGGGGGTAGGGGGTAG+TGG | - | chr1_3:67799121-67799140 | None:intergenic | 65.0% | |
| TTGCTGGGGAGGAACGCCGA+CGG | - | chr1_3:67799171-67799190 | None:intergenic | 65.0% | |
| GAGGATGGACCTTGCTGGGG+AGG | - | chr1_3:67799182-67799201 | None:intergenic | 65.0% | |
| ! | TACCCGGCGCCGGAGACTTA+TGG | + | chr1_3:67799337-67799356 | Msa0136010:CDS | 65.0% |
| GGTGGGTAGCCCTGTTGTGG+AGG | - | chr1_3:67799439-67799458 | None:intergenic | 65.0% | |
| TGCGGTGGGTAGCCCTGTTG+TGG | - | chr1_3:67799442-67799461 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGAGCGTACTG+AGG | - | chr1_3:67799472-67799491 | None:intergenic | 65.0% |
| !! | GGCGGTGCTGGTTGCATGGA+AGG | + | chr1_3:67799508-67799527 | Msa0136010:CDS | 65.0% |
| TGCTGGGGAGGAACGCCGAC+GGG | - | chr1_3:67799170-67799189 | None:intergenic | 70.0% | |
| GTCGGCGTTCCTCCCCAGCA+AGG | + | chr1_3:67799170-67799189 | Msa0136010:CDS | 70.0% | |
| TGCTGGGGAGGAACGCCGAC+GGG | - | chr1_3:67799170-67799189 | None:intergenic | 70.0% | |
| GTCGGCGTTCCTCCCCAGCA+AGG | + | chr1_3:67799170-67799189 | Msa0136010:CDS | 70.0% | |
| CGCCGACGGGCGGTTGCTGT+TGG | - | chr1_3:67799157-67799176 | None:intergenic | 75.0% | |
| TGGGGAGGAACGCCGACGGG+CGG | - | chr1_3:67799167-67799186 | None:intergenic | 75.0% | |
| CGCCGACGGGCGGTTGCTGT+TGG | - | chr1_3:67799157-67799176 | None:intergenic | 75.0% | |
| TGGGGAGGAACGCCGACGGG+CGG | - | chr1_3:67799167-67799186 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 67799063 | 67801190 | 67799063 | ID=Msa0136010;Name=Msa0136010 |
| chr1_3 | mRNA | 67799063 | 67801190 | 67799063 | ID=Msa0136010-mRNA-1;Parent=Msa0136010;Name=Msa0136010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=77|0.33|0.75|0.75|0.33|0.25|4|219|131 |
| chr1_3 | exon | 67799063 | 67799191 | 67799063 | ID=Msa0136010-mRNA-1:exon:23340;Parent=Msa0136010-mRNA-1 |
| chr1_3 | exon | 67799335 | 67799533 | 67799335 | ID=Msa0136010-mRNA-1:exon:23341;Parent=Msa0136010-mRNA-1 |
| chr1_3 | exon | 67799662 | 67799713 | 67799662 | ID=Msa0136010-mRNA-1:exon:23342;Parent=Msa0136010-mRNA-1 |
| chr1_3 | exon | 67800879 | 67801190 | 67800879 | ID=Msa0136010-mRNA-1:exon:23343;Parent=Msa0136010-mRNA-1 |
| chr1_3 | five_prime_UTR | 67799063 | 67799139 | 67799063 | ID=Msa0136010-mRNA-1:five_prime_utr;Parent=Msa0136010-mRNA-1 |
| chr1_3 | CDS | 67799140 | 67799191 | 67799140 | ID=Msa0136010-mRNA-1:cds;Parent=Msa0136010-mRNA-1 |
| chr1_3 | CDS | 67799335 | 67799533 | 67799335 | ID=Msa0136010-mRNA-1:cds;Parent=Msa0136010-mRNA-1 |
| chr1_3 | CDS | 67799662 | 67799713 | 67799662 | ID=Msa0136010-mRNA-1:cds;Parent=Msa0136010-mRNA-1 |
| chr1_3 | CDS | 67800879 | 67800971 | 67800879 | ID=Msa0136010-mRNA-1:cds;Parent=Msa0136010-mRNA-1 |
| chr1_3 | three_prime_UTR | 67800972 | 67801190 | 67800972 | ID=Msa0136010-mRNA-1:three_prime_utr;Parent=Msa0136010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
