AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1427900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427900 MtrunA17_Chr1g0196611 92.481 399 29 1 1 398 1 399 0.0 750
Msa1427900 MtrunA17_Chr7g0259491 57.895 418 168 3 2 412 1 417 3.48e-167 475
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1427900 AT4G02920.2 37.209 430 234 11 5 412 3 418 2.91e-81 256
Msa1427900 AT4G02920.1 37.209 430 233 12 5 412 3 417 2.64e-80 253
Msa1427900 AT1G03340.1 34.844 353 195 8 63 412 65 385 4.75e-52 179

Find 105 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGGGTTTGCAACTTTC+AGG 0.131456 tig0026227:+37553 Msa1427900:CDS
TTCAACACAGGGTTGGGTTT+TGG 0.134883 tig0026227:+39461 Msa1427900:CDS
TTGGGCTTATTTGGCTTTCT+TGG 0.139996 tig0026227:+39480 Msa1427900:CDS
TCATCTCATGCAATCATATT+TGG 0.156230 tig0026227:+40033 Msa1427900:three_prime_UTR
CCACTAAAGGAGGGGAATTT+TGG 0.184646 tig0026227:+36821 Msa1427900:five_prime_UTR
AAATGGTCAAGTCACGTTTA+TGG 0.221667 tig0026227:+37699 Msa1427900:CDS
AAAATTACTGTTCATCTAAA+TGG 0.237725 tig0026227:+37682 Msa1427900:CDS
GAGATGTAGAAAGTCCTATT+TGG 0.244598 tig0026227:-37616 None:intergenic
CACTGACCATTCCTTTAAAA+AGG 0.245242 tig0026227:+38723 Msa1427900:CDS
TGGGCTTATTTGGCTTTCTT+GGG 0.252384 tig0026227:+39481 Msa1427900:CDS
TGGTATGATTATTACTTATT+AGG 0.268162 tig0026227:+39827 Msa1427900:three_prime_UTR
GATATCAGAGTCCAAATCTT+AGG 0.281870 tig0026227:+37091 Msa1427900:CDS
CCAAAATTCCCCTCCTTTAG+TGG 0.284993 tig0026227:-36821 None:intergenic
GATGAATTTAACCTAAGATT+TGG 0.287708 tig0026227:-37102 None:intergenic
GATTCAGAAACTTACTTTGA+TGG 0.292699 tig0026227:+36893 Msa1427900:CDS
CAATTCTCTGCTGGCATTGC+TGG 0.299676 tig0026227:+39362 Msa1427900:CDS
GATATTCCCTTTCTTCATAA+AGG 0.301994 tig0026227:+39973 Msa1427900:three_prime_UTR
TGAGAACCTTCTGTTCTTGA+TGG 0.332945 tig0026227:+39262 Msa1427900:CDS
TTATGAAGAAAGGGAATATC+TGG 0.346505 tig0026227:-39970 None:intergenic
CTCTGATATCTAATAATATC+TGG 0.353756 tig0026227:-37078 None:intergenic
GGATTGGCTTTGACTTTCTT+CGG 0.356219 tig0026227:-39170 None:intergenic
TTCACCTAAGCTTTGACATT+TGG 0.358783 tig0026227:+39790 Msa1427900:three_prime_UTR
TATCTAATAATATCTGGTTT+TGG 0.360696 tig0026227:-37072 None:intergenic
AGCTTTGTTGTCTGACTTGA+TGG 0.364159 tig0026227:+37537 Msa1427900:CDS
AATGGTCAAGTCACGTTTAT+GGG 0.369340 tig0026227:+37700 Msa1427900:CDS
GTTCTTTCACTGAAGAAATC+AGG 0.382585 tig0026227:+39314 Msa1427900:CDS
AACCGTTGTATCTGATTTGT+TGG 0.383628 tig0026227:+39713 Msa1427900:three_prime_UTR
TCTGCTGGCATTGCTGGTAC+TGG 0.385638 tig0026227:+39368 Msa1427900:CDS
AAGATAAATTGTAAAGTCTA+AGG 0.387834 tig0026227:+39902 Msa1427900:three_prime_UTR
AAGGTCTTCAACACAGGGTT+GGG 0.391495 tig0026227:+39455 Msa1427900:CDS
ATCCTCTCATCTACCCAAAT+AGG 0.392024 tig0026227:+37602 Msa1427900:CDS
ATGATAGGGTTGTCAACAAT+TGG 0.402315 tig0026227:+37035 Msa1427900:intron
AGATGTAGAAAGTCCTATTT+GGG 0.403362 tig0026227:-37615 None:intergenic
TGTACATACCTAGTGAAGTA+TGG 0.405041 tig0026227:-37817 None:intergenic
TATGTAACCTTTATGAAGAA+AGG 0.413592 tig0026227:-39980 None:intergenic
ATTTGGCTTGATCATCACTA+TGG 0.414828 tig0026227:+39807 Msa1427900:three_prime_UTR
ACTGCTGAAGCAGGTGTAGA+TGG 0.422574 tig0026227:+37505 Msa1427900:CDS
AAGCAAGAATGCTGGAAAGA+TGG 0.436409 tig0026227:+39538 Msa1427900:CDS
AGCAAGAATGCTGGAAAGAT+GGG 0.449740 tig0026227:+39539 Msa1427900:CDS
TGTTCTTGATGGCTGATAAG+AGG 0.453397 tig0026227:+39273 Msa1427900:CDS
AAATGCTTACATTACTTGCT+TGG 0.454470 tig0026227:-39863 None:intergenic
GAGAATTGTGTAAGGAGCTC+GGG 0.454630 tig0026227:-39347 None:intergenic
TGATGGGTTTGCAACTTTCA+GGG 0.455500 tig0026227:+37554 Msa1427900:CDS
CTATCACTTCAGCAGCCATC+AGG 0.462770 tig0026227:-39744 None:intergenic
GAAGACCTTAGACGCACAAA+AGG 0.465886 tig0026227:-39441 None:intergenic
ATAACCATTGGCTTTAAAGC+TGG 0.468065 tig0026227:-37189 None:intergenic
GCGTCTAAGGTCTTCAACAC+AGG 0.476430 tig0026227:+39449 Msa1427900:CDS
CTTACTTTGATGGCTTCTCA+TGG 0.481501 tig0026227:+36903 Msa1427900:CDS
GGCTGATAAGAGGCATCGTC+GGG 0.482476 tig0026227:+39283 Msa1427900:CDS
TTCACTGAAGAAATCAGGTC+CGG 0.487415 tig0026227:+39319 Msa1427900:CDS
CAAGCCAAATGTCAAAGCTT+AGG 0.491076 tig0026227:-39794 None:intergenic
AAGCATTTGCTTGGCTTTAG+CGG 0.496226 tig0026227:+39878 Msa1427900:three_prime_UTR
TGCTAGTAGTGGCAGTGCTA+AGG 0.499557 tig0026227:+39633 Msa1427900:CDS
ATGTAACCTTTATGAAGAAA+GGG 0.501688 tig0026227:-39979 None:intergenic
CTCCTTACACAATTCTCTGC+TGG 0.505017 tig0026227:+39353 Msa1427900:CDS
TTGTTGGATGTTCAGCCTGA+TGG 0.508069 tig0026227:+39729 Msa1427900:three_prime_UTR
GGGCTTATTTGGCTTTCTTG+GGG 0.508276 tig0026227:+39482 Msa1427900:CDS
GTAAGGAGCTCGGGAAGCTC+CGG 0.511742 tig0026227:-39338 None:intergenic
GTATCAAAACGCACACATAC+AGG 0.515015 tig0026227:+37772 Msa1427900:CDS
AAGACCTTAGACGCACAAAA+GGG 0.516732 tig0026227:-39440 None:intergenic
TTCATGGCATATTCTTGAGA+TGG 0.519316 tig0026227:-36930 None:intergenic
AGAGGATGCAATGATATTTG+AGG 0.523196 tig0026227:-37586 None:intergenic
AAGCTCAAAAGTATAGTGCT+TGG 0.523213 tig0026227:-37424 None:intergenic
AAGTAATGTAAGCATTTGCT+TGG 0.525023 tig0026227:+39869 Msa1427900:three_prime_UTR
CCTTGTACATCAATAACCAT+TGG 0.531857 tig0026227:-37201 None:intergenic
TAAGGTCTTCAACACAGGGT+TGG 0.534621 tig0026227:+39454 Msa1427900:CDS
TTTGCCAGCTTTAAAGCCAA+TGG 0.535948 tig0026227:+37185 Msa1427900:CDS
AGAGAATTGTGTAAGGAGCT+CGG 0.542826 tig0026227:-39348 None:intergenic
AAAAGAAAGTAGCCAGGGAG+AGG 0.544026 tig0026227:+39207 Msa1427900:CDS
ATCTCAAGAATATGCCATGA+AGG 0.545054 tig0026227:+36932 Msa1427900:CDS
CTTGAACAGATCCCTCTCCC+TGG 0.545602 tig0026227:-39219 None:intergenic
ACATCTAAGACTGCTGAAGC+AGG 0.548211 tig0026227:+37496 Msa1427900:CDS
AGCTGCAGCGTTGCTAGTAG+TGG 0.549465 tig0026227:+39622 Msa1427900:CDS
GTTAACATAAGCAAGAATGC+TGG 0.550226 tig0026227:+39530 Msa1427900:CDS
TTTGATAGAGCCACTAAAGG+AGG 0.552159 tig0026227:+36811 Msa1427900:five_prime_UTR
TGGCTGCTGAAGTGATAGCC+AGG 0.563013 tig0026227:+39749 Msa1427900:three_prime_UTR
GCTTTGTTGTCTGACTTGAT+GGG 0.563096 tig0026227:+37538 Msa1427900:CDS
TTGATAGAGCCACTAAAGGA+GGG 0.573532 tig0026227:+36812 Msa1427900:five_prime_UTR
TGATAGAGCCACTAAAGGAG+GGG 0.573616 tig0026227:+36813 Msa1427900:five_prime_UTR
TGCCAGCAGAGAATTGTGTA+AGG 0.578242 tig0026227:-39355 None:intergenic
GCTGAATATAAATGAAGTAG+AGG 0.580301 tig0026227:+38664 Msa1427900:CDS
TGGCTGATAAGAGGCATCGT+CGG 0.580551 tig0026227:+39282 Msa1427900:CDS
CTTGGGGAGTAAATAAGCTG+AGG 0.580784 tig0026227:+39498 Msa1427900:CDS
CAAGAATGACATCAAAAGAG+TGG 0.595539 tig0026227:+37133 Msa1427900:CDS
TATCAGCCATCAAGAACAGA+AGG 0.595640 tig0026227:-39268 None:intergenic
TGCTTGTTCCATACTTCACT+AGG 0.596244 tig0026227:+37809 Msa1427900:CDS
AAAGAAAGTAGCCAGGGAGA+GGG 0.598067 tig0026227:+39208 Msa1427900:CDS
GACCTTAGACGCACAAAAGG+GGG 0.599512 tig0026227:-39438 None:intergenic
GTAGAGTGAATATCCAATGT+GGG 0.603918 tig0026227:-38701 None:intergenic
CGTCTAAGGTCTTCAACACA+GGG 0.609157 tig0026227:+39450 Msa1427900:CDS
TCTGCAAACTAGCTTGCGGA+AGG 0.611580 tig0026227:+39414 Msa1427900:CDS
CCAATGGTTATTGATGTACA+AGG 0.614079 tig0026227:+37201 Msa1427900:CDS
TTGGGGAGTAAATAAGCTGA+GGG 0.614442 tig0026227:+39499 Msa1427900:CDS
GTCCTATTTGGGTAGATGAG+AGG 0.616451 tig0026227:-37604 None:intergenic
AAAGATGGGATTGAAAGATG+AGG 0.631344 tig0026227:+39553 Msa1427900:CDS
GTGATCTGCAAACTAGCTTG+CGG 0.634286 tig0026227:+39410 Msa1427900:CDS
AGACCTTAGACGCACAAAAG+GGG 0.635020 tig0026227:-39439 None:intergenic
AAATGTCAAAGCTTAGGTGA+AGG 0.636141 tig0026227:-39788 None:intergenic
TAGAGTGAATATCCAATGTG+GGG 0.640007 tig0026227:-38700 None:intergenic
ATCCAACAAATCAGATACAA+CGG 0.645213 tig0026227:-39715 None:intergenic
GTTGCAATGAATGAACTGAC+TGG 0.649728 tig0026227:+39931 Msa1427900:three_prime_UTR
TGTAGAGTGAATATCCAATG+TGG 0.652502 tig0026227:-38702 None:intergenic
CTGCAAACTAGCTTGCGGAA+GGG 0.661355 tig0026227:+39415 Msa1427900:CDS
TCACAGATAGCACGACAGCA+AGG 0.673650 tig0026227:-39391 None:intergenic
AGAGTGAATATCCAATGTGG+GGG 0.681745 tig0026227:-38699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTTTTTTTATGAT+AGG + tig0026227:37020-37039 Msa1427900:intron 10.0%
!!! GAATTTTTTTTTTTATGATA+GGG + tig0026227:37021-37040 Msa1427900:intron 10.0%
!! GTTATATTTATAATTAAATC+CGG - tig0026227:37968-37987 None:intergenic 10.0%
!! ATAATAGAAAACAATATTCA+GGG + tig0026227:37901-37920 Msa1427900:intron 15.0%
!! TAACATCAAATTTAAAAACT+TGG + tig0026227:37984-38003 Msa1427900:intron 15.0%
!! AAAATGCATATAATTAAAGT+CGG - tig0026227:38926-38945 None:intergenic 15.0%
!! AAAAAAAACTTTGCGTTTAA+AGG + tig0026227:36762-36781 Msa1427900:five_prime_UTR 20.0%
!!! TTTTTTTTTGAGAGAGAATT+TGG - tig0026227:36857-36876 None:intergenic 20.0%
!!! TACTAATAATTTTACCTTCA+TGG - tig0026227:36949-36968 None:intergenic 20.0%
!!! TATCTAATAATATCTGGTTT+TGG - tig0026227:37075-37094 None:intergenic 20.0%
!!! CTGAAATTATTCTTATCTTT+TGG + tig0026227:37387-37406 Msa1427900:intron 20.0%
!!! AACAGTAATTTTTGAACTAA+GGG - tig0026227:37674-37693 None:intergenic 20.0%
!! AAAATTACTGTTCATCTAAA+TGG + tig0026227:37682-37701 Msa1427900:CDS 20.0%
!! TGTGATCAATTGAATTTAAA+CGG - tig0026227:37852-37871 None:intergenic 20.0%
!! CATAATAGAAAACAATATTC+AGG + tig0026227:37900-37919 Msa1427900:intron 20.0%
!!! CACATTTAAAAATGCATTTT+TGG - tig0026227:38010-38029 None:intergenic 20.0%
!!! TAAATTTGTCGTACATATTT+TGG + tig0026227:38172-38191 Msa1427900:intron 20.0%
!!! TCGAATAATTTTATCTAACT+CGG + tig0026227:38383-38402 Msa1427900:intron 20.0%
!! GTTAAAGTAGTAAAAATCAA+TGG + tig0026227:38459-38478 Msa1427900:intron 20.0%
!! CAAGAATAGAATATTGAATA+TGG - tig0026227:38595-38614 None:intergenic 20.0%
!! AAATGCATATAATTAAAGTC+GGG - tig0026227:38925-38944 None:intergenic 20.0%
!! TGGTATGATTATTACTTATT+AGG + tig0026227:39827-39846 Msa1427900:three_prime_UTR 20.0%
!! AAGATAAATTGTAAAGTCTA+AGG + tig0026227:39902-39921 Msa1427900:three_prime_UTR 20.0%
!!! CAAAGTTTTTTTTTTGTGGT+TGG - tig0026227:36755-36774 None:intergenic 25.0%
!!! AACGCAAAGTTTTTTTTTTG+TGG - tig0026227:36759-36778 None:intergenic 25.0%
! CTCTGATATCTAATAATATC+TGG - tig0026227:37081-37100 None:intergenic 25.0%
! GATGAATTTAACCTAAGATT+TGG - tig0026227:37105-37124 None:intergenic 25.0%
! AATGCACAAATTCAATAAAC+TGG - tig0026227:37234-37253 None:intergenic 25.0%
! AGTAGAATGCTTGAATTAAA+AGG + tig0026227:37317-37336 Msa1427900:intron 25.0%
! CTCGTAAAAAATATACAACA+TGG - tig0026227:37353-37372 None:intergenic 25.0%
! TCTTGAAAAAAATCAAGCAA+AGG - tig0026227:37646-37665 None:intergenic 25.0%
!! GAACAGTAATTTTTGAACTA+AGG - tig0026227:37675-37694 None:intergenic 25.0%
! ATAGCTGTAAATTTGATCAT+TGG + tig0026227:38282-38301 Msa1427900:intron 25.0%
! TAGCTGTAAATTTGATCATT+GGG + tig0026227:38283-38302 Msa1427900:intron 25.0%
!! TATTCTACCTACCTTTTTAA+AGG - tig0026227:38737-38756 None:intergenic 25.0%
!! AATATGTTTTCCATGACAAT+TGG + tig0026227:38753-38772 Msa1427900:intron 25.0%
! TTTCTCTTAAAATTTGAGCT+AGG - tig0026227:38980-38999 None:intergenic 25.0%
!!! AGGGAATCATGTTTTATTTT+TGG + tig0026227:39013-39032 Msa1427900:intron 25.0%
!!! GGGAATCATGTTTTATTTTT+GGG + tig0026227:39014-39033 Msa1427900:intron 25.0%
!!! TTCTTTTTCTTTTTTCGTGA+TGG - tig0026227:39194-39213 None:intergenic 25.0%
! ATGTAACCTTTATGAAGAAA+GGG - tig0026227:39982-40001 None:intergenic 25.0%
! TATGTAACCTTTATGAAGAA+AGG - tig0026227:39983-40002 None:intergenic 25.0%
GATTCAGAAACTTACTTTGA+TGG + tig0026227:36893-36912 Msa1427900:CDS 30.0%
TCAAGCATTCTACTAATACA+TGG - tig0026227:37311-37330 None:intergenic 30.0%
AGATGTAGAAAGTCCTATTT+GGG - tig0026227:37618-37637 None:intergenic 30.0%
! ATGTTAAAGCTTTATCATGC+AGG - tig0026227:38074-38093 None:intergenic 30.0%
! ACTTTTGCTGAAAATCTACA+TGG + tig0026227:38637-38656 Msa1427900:intron 30.0%
GCTGAATATAAATGAAGTAG+AGG + tig0026227:38664-38683 Msa1427900:CDS 30.0%
!! TACCTACCTTTTTAAAGGAA+TGG - tig0026227:38732-38751 None:intergenic 30.0%
! ATTTTGCGTATGTCAAATTC+AGG - tig0026227:38785-38804 None:intergenic 30.0%
TACGCAAAATATGCTGTTAT+AGG + tig0026227:38795-38814 Msa1427900:intron 30.0%
TCTATCCTCTGTAAAACAAA+TGG + tig0026227:38853-38872 Msa1427900:intron 30.0%
!!! ATGATCCATTTGTTTTACAG+AGG - tig0026227:38861-38880 None:intergenic 30.0%
CTGTAAAACAAATGGATCAT+TGG + tig0026227:38861-38880 Msa1427900:intron 30.0%
!! GAGAGCTTTTACTCTAAAAA+TGG + tig0026227:38887-38906 Msa1427900:intron 30.0%
TTTGTTTCCTTCATATGATG+TGG + tig0026227:38943-38962 Msa1427900:intron 30.0%
AGAGAAATAATCATCAGATG+AGG + tig0026227:38993-39012 Msa1427900:intron 30.0%
GAGAAATAATCATCAGATGA+GGG + tig0026227:38994-39013 Msa1427900:intron 30.0%
!!! TTTCTTTTTTCGTGATGGAT+TGG - tig0026227:39189-39208 None:intergenic 30.0%
AAAAGAAAAAGAAAGTAGCC+AGG + tig0026227:39201-39220 Msa1427900:CDS 30.0%
AAAGAAAAAGAAAGTAGCCA+GGG + tig0026227:39202-39221 Msa1427900:CDS 30.0%
TGAGGAAATGATTCAAAAAG+TGG + tig0026227:39571-39590 Msa1427900:CDS 30.0%
ATCCAACAAATCAGATACAA+CGG - tig0026227:39718-39737 None:intergenic 30.0%
AAATGCTTACATTACTTGCT+TGG - tig0026227:39866-39885 None:intergenic 30.0%
AAGTAATGTAAGCATTTGCT+TGG + tig0026227:39869-39888 Msa1427900:three_prime_UTR 30.0%
TTATGAAGAAAGGGAATATC+TGG - tig0026227:39973-39992 None:intergenic 30.0%
GATATTCCCTTTCTTCATAA+AGG + tig0026227:39973-39992 Msa1427900:three_prime_UTR 30.0%
TCATCTCATGCAATCATATT+TGG + tig0026227:40033-40052 Msa1427900:three_prime_UTR 30.0%
! GTTTTTGATAGAGCCACTAA+AGG + tig0026227:36808-36827 Msa1427900:five_prime_UTR 35.0%
TTCATGGCATATTCTTGAGA+TGG - tig0026227:36933-36952 None:intergenic 35.0%
ATCTCAAGAATATGCCATGA+AGG + tig0026227:36932-36951 Msa1427900:CDS 35.0%
ATGATAGGGTTGTCAACAAT+TGG + tig0026227:37035-37054 Msa1427900:intron 35.0%
GATATCAGAGTCCAAATCTT+AGG + tig0026227:37091-37110 Msa1427900:CDS 35.0%
CAAGAATGACATCAAAAGAG+TGG + tig0026227:37133-37152 Msa1427900:CDS 35.0%
!! ATAACCATTGGCTTTAAAGC+TGG - tig0026227:37192-37211 None:intergenic 35.0%
CCTTGTACATCAATAACCAT+TGG - tig0026227:37204-37223 None:intergenic 35.0%
CCAATGGTTATTGATGTACA+AGG + tig0026227:37201-37220 Msa1427900:CDS 35.0%
! AAGCTCAAAAGTATAGTGCT+TGG - tig0026227:37427-37446 None:intergenic 35.0%
! AGCACTATACTTTTGAGCTT+TGG + tig0026227:37427-37446 Msa1427900:CDS 35.0%
!! CTGTGAAGTTTTATCATGCT+CGG - tig0026227:37470-37489 None:intergenic 35.0%
AGAGGATGCAATGATATTTG+AGG - tig0026227:37589-37608 None:intergenic 35.0%
GAGATGTAGAAAGTCCTATT+TGG - tig0026227:37619-37638 None:intergenic 35.0%
AAATGGTCAAGTCACGTTTA+TGG + tig0026227:37699-37718 Msa1427900:CDS 35.0%
AATGGTCAAGTCACGTTTAT+GGG + tig0026227:37700-37719 Msa1427900:CDS 35.0%
TGTACATACCTAGTGAAGTA+TGG - tig0026227:37820-37839 None:intergenic 35.0%
TCACTAGGTATGTACATATG+TGG + tig0026227:37824-37843 Msa1427900:intron 35.0%
TCACATGAAATCCTTCTGTT+TGG + tig0026227:37867-37886 Msa1427900:intron 35.0%
CACATGAAATCCTTCTGTTT+GGG + tig0026227:37868-37887 Msa1427900:intron 35.0%
AACAATATTCAGGGACTTCT+TGG + tig0026227:37910-37929 Msa1427900:intron 35.0%
GTCAATCTATTGATCAACAC+CGG + tig0026227:37946-37965 Msa1427900:intron 35.0%
AAACAGAGTCACATGCATAT+GGG - tig0026227:38335-38354 None:intergenic 35.0%
AAAACAGAGTCACATGCATA+TGG - tig0026227:38336-38355 None:intergenic 35.0%
CGGCAACAAATACAAAAATC+AGG + tig0026227:38403-38422 Msa1427900:intron 35.0%
TAGAGTGAATATCCAATGTG+GGG - tig0026227:38703-38722 None:intergenic 35.0%
GTAGAGTGAATATCCAATGT+GGG - tig0026227:38704-38723 None:intergenic 35.0%
TGTAGAGTGAATATCCAATG+TGG - tig0026227:38705-38724 None:intergenic 35.0%
! CACTGACCATTCCTTTAAAA+AGG + tig0026227:38723-38742 Msa1427900:CDS 35.0%
! GACCATTCCTTTAAAAAGGT+AGG + tig0026227:38727-38746 Msa1427900:intron 35.0%
ACTCAATCCACATCATATGA+AGG - tig0026227:38953-38972 None:intergenic 35.0%
! CATATGATGTGGATTGAGTT+AGG + tig0026227:38954-38973 Msa1427900:intron 35.0%
CAAATACTGTGATCACTGTA+TGG - tig0026227:39097-39116 None:intergenic 35.0%
GTTCTTTCACTGAAGAAATC+AGG + tig0026227:39314-39333 Msa1427900:CDS 35.0%
GTTAACATAAGCAAGAATGC+TGG + tig0026227:39530-39549 Msa1427900:CDS 35.0%
AAAGATGGGATTGAAAGATG+AGG + tig0026227:39553-39572 Msa1427900:CDS 35.0%
! AACCGTTGTATCTGATTTGT+TGG + tig0026227:39713-39732 Msa1427900:three_prime_UTR 35.0%
AAATGTCAAAGCTTAGGTGA+AGG - tig0026227:39791-39810 None:intergenic 35.0%
! TTCACCTAAGCTTTGACATT+TGG + tig0026227:39790-39809 Msa1427900:three_prime_UTR 35.0%
!! ATTTGGCTTGATCATCACTA+TGG + tig0026227:39807-39826 Msa1427900:three_prime_UTR 35.0%
TTTGATAGAGCCACTAAAGG+AGG + tig0026227:36811-36830 Msa1427900:five_prime_UTR 40.0%
TTGATAGAGCCACTAAAGGA+GGG + tig0026227:36812-36831 Msa1427900:five_prime_UTR 40.0%
! CTTACTTTGATGGCTTCTCA+TGG + tig0026227:36903-36922 Msa1427900:CDS 40.0%
!!! TCTGGTTTTGGTGCATAACA+AGG - tig0026227:37063-37082 None:intergenic 40.0%
!! TTTGCCAGCTTTAAAGCCAA+TGG + tig0026227:37185-37204 Msa1427900:CDS 40.0%
!! AGCTTTGTTGTCTGACTTGA+TGG + tig0026227:37537-37556 Msa1427900:CDS 40.0%
! GCTTTGTTGTCTGACTTGAT+GGG + tig0026227:37538-37557 Msa1427900:CDS 40.0%
!! TTGATGGGTTTGCAACTTTC+AGG + tig0026227:37553-37572 Msa1427900:CDS 40.0%
!! TGATGGGTTTGCAACTTTCA+GGG + tig0026227:37554-37573 Msa1427900:CDS 40.0%
ATCCTCTCATCTACCCAAAT+AGG + tig0026227:37602-37621 Msa1427900:CDS 40.0%
GTATCAAAACGCACACATAC+AGG + tig0026227:37772-37791 Msa1427900:CDS 40.0%
TGCTTGTTCCATACTTCACT+AGG + tig0026227:37809-37828 Msa1427900:CDS 40.0%
GACAAAGTAACCCAAACAGA+AGG - tig0026227:37881-37900 None:intergenic 40.0%
TCGAGTGTATTGTCTGATAC+TGG + tig0026227:38037-38056 Msa1427900:intron 40.0%
AGTGTATTGTCTGATACTGG+AGG + tig0026227:38040-38059 Msa1427900:intron 40.0%
GTTTGTCGGAAACTTAGTTC+AGG - tig0026227:38515-38534 None:intergenic 40.0%
GCGTAACTTCAAAGGTTTGT+CGG - tig0026227:38529-38548 None:intergenic 40.0%
TGCTGAAAATCTACATGGAC+AGG + tig0026227:38642-38661 Msa1427900:intron 40.0%
AGAGTGAATATCCAATGTGG+GGG - tig0026227:38702-38721 None:intergenic 40.0%
TTGCGTATGTCAAATTCAGG+AGG - tig0026227:38782-38801 None:intergenic 40.0%
GCACATGAGACTATCAACAA+TGG - tig0026227:39072-39091 None:intergenic 40.0%
!! GGATTGGCTTTGACTTTCTT+CGG - tig0026227:39173-39192 None:intergenic 40.0%
TGAGAACCTTCTGTTCTTGA+TGG + tig0026227:39262-39281 Msa1427900:CDS 40.0%
TATCAGCCATCAAGAACAGA+AGG - tig0026227:39271-39290 None:intergenic 40.0%
! TGTTCTTGATGGCTGATAAG+AGG + tig0026227:39273-39292 Msa1427900:CDS 40.0%
TTCACTGAAGAAATCAGGTC+CGG + tig0026227:39319-39338 Msa1427900:CDS 40.0%
AGAGAATTGTGTAAGGAGCT+CGG - tig0026227:39351-39370 None:intergenic 40.0%
AAGACCTTAGACGCACAAAA+GGG - tig0026227:39443-39462 None:intergenic 40.0%
!! TTGGGCTTATTTGGCTTTCT+TGG + tig0026227:39480-39499 Msa1427900:CDS 40.0%
!! TGGGCTTATTTGGCTTTCTT+GGG + tig0026227:39481-39500 Msa1427900:CDS 40.0%
TTGGGGAGTAAATAAGCTGA+GGG + tig0026227:39499-39518 Msa1427900:CDS 40.0%
AAGCAAGAATGCTGGAAAGA+TGG + tig0026227:39538-39557 Msa1427900:CDS 40.0%
AGCAAGAATGCTGGAAAGAT+GGG + tig0026227:39539-39558 Msa1427900:CDS 40.0%
!!! GGTACAGATGTTTTGAAACC+TGG - tig0026227:39770-39789 None:intergenic 40.0%
CAAGCCAAATGTCAAAGCTT+AGG - tig0026227:39797-39816 None:intergenic 40.0%
!! AAGCATTTGCTTGGCTTTAG+CGG + tig0026227:39878-39897 Msa1427900:three_prime_UTR 40.0%
GTTGCAATGAATGAACTGAC+TGG + tig0026227:39931-39950 Msa1427900:three_prime_UTR 40.0%
TGATAGAGCCACTAAAGGAG+GGG + tig0026227:36813-36832 Msa1427900:five_prime_UTR 45.0%
CCAAAATTCCCCTCCTTTAG+TGG - tig0026227:36824-36843 None:intergenic 45.0%
! CCACTAAAGGAGGGGAATTT+TGG + tig0026227:36821-36840 Msa1427900:five_prime_UTR 45.0%
! ACATCTAAGACTGCTGAAGC+AGG + tig0026227:37496-37515 Msa1427900:CDS 45.0%
GTCCTATTTGGGTAGATGAG+AGG - tig0026227:37607-37626 None:intergenic 45.0%
TTGTATCCATAAGCGCGCAA+TGG + tig0026227:38137-38156 Msa1427900:intron 45.0%
CATGTTACTCTTGTCTTGCC+AGG + tig0026227:38217-38236 Msa1427900:intron 45.0%
!! CAGGAGTGCTGTGTTAGTTT+GGG + tig0026227:38236-38255 Msa1427900:intron 45.0%
AGTCACATGCATATGGGATC+AGG - tig0026227:38329-38348 None:intergenic 45.0%
GGACTCACTATGCAAGAACA+AGG - tig0026227:38489-38508 None:intergenic 45.0%
TCGGAAACTTAGTTCAGGCA+GGG - tig0026227:38510-38529 None:intergenic 45.0%
GCACGTATGCGTAACTTCAA+AGG - tig0026227:38537-38556 None:intergenic 45.0%
AAAAGAAAGTAGCCAGGGAG+AGG + tig0026227:39207-39226 Msa1427900:CDS 45.0%
AAAGAAAGTAGCCAGGGAGA+GGG + tig0026227:39208-39227 Msa1427900:CDS 45.0%
GAGAATTGTGTAAGGAGCTC+GGG - tig0026227:39350-39369 None:intergenic 45.0%
CTCCTTACACAATTCTCTGC+TGG + tig0026227:39353-39372 Msa1427900:CDS 45.0%
TGCCAGCAGAGAATTGTGTA+AGG - tig0026227:39358-39377 None:intergenic 45.0%
! GTGATCTGCAAACTAGCTTG+CGG + tig0026227:39410-39429 Msa1427900:CDS 45.0%
AGACCTTAGACGCACAAAAG+GGG - tig0026227:39442-39461 None:intergenic 45.0%
GAAGACCTTAGACGCACAAA+AGG - tig0026227:39444-39463 None:intergenic 45.0%
! CGTCTAAGGTCTTCAACACA+GGG + tig0026227:39450-39469 Msa1427900:CDS 45.0%
TAAGGTCTTCAACACAGGGT+TGG + tig0026227:39454-39473 Msa1427900:CDS 45.0%
AAGGTCTTCAACACAGGGTT+GGG + tig0026227:39455-39474 Msa1427900:CDS 45.0%
! TTCAACACAGGGTTGGGTTT+TGG + tig0026227:39461-39480 Msa1427900:CDS 45.0%
! TCAACACAGGGTTGGGTTTT+GGG + tig0026227:39462-39481 Msa1427900:CDS 45.0%
!!! GGTTGGGTTTTGGGCTTATT+TGG + tig0026227:39471-39490 Msa1427900:CDS 45.0%
!! GGGCTTATTTGGCTTTCTTG+GGG + tig0026227:39482-39501 Msa1427900:CDS 45.0%
CTTGGGGAGTAAATAAGCTG+AGG + tig0026227:39498-39517 Msa1427900:CDS 45.0%
TTGTTGGATGTTCAGCCTGA+TGG + tig0026227:39729-39748 Msa1427900:three_prime_UTR 45.0%
ACTGCTGAAGCAGGTGTAGA+TGG + tig0026227:37505-37524 Msa1427900:CDS 50.0%
CCAAACTAACACAGCACTCC+TGG - tig0026227:38238-38257 None:intergenic 50.0%
!! CCAGGAGTGCTGTGTTAGTT+TGG + tig0026227:38235-38254 Msa1427900:intron 50.0%
GTCGGAAACTTAGTTCAGGC+AGG - tig0026227:38511-38530 None:intergenic 50.0%
CAATGTGGGGGAAATGCTTC+TGG - tig0026227:38690-38709 None:intergenic 50.0%
!! CAGAAGCATTTCCCCCACAT+TGG + tig0026227:38688-38707 Msa1427900:CDS 50.0%
CAGGAGGAAGCCAATTGTCA+TGG - tig0026227:38766-38785 None:intergenic 50.0%
!! TGGCTGATAAGAGGCATCGT+CGG + tig0026227:39282-39301 Msa1427900:CDS 50.0%
CAATTCTCTGCTGGCATTGC+TGG + tig0026227:39362-39381 Msa1427900:CDS 50.0%
TCACAGATAGCACGACAGCA+AGG - tig0026227:39394-39413 None:intergenic 50.0%
! TCTGCAAACTAGCTTGCGGA+AGG + tig0026227:39414-39433 Msa1427900:CDS 50.0%
! CTGCAAACTAGCTTGCGGAA+GGG + tig0026227:39415-39434 Msa1427900:CDS 50.0%
GACCTTAGACGCACAAAAGG+GGG - tig0026227:39441-39460 None:intergenic 50.0%
! GCGTCTAAGGTCTTCAACAC+AGG + tig0026227:39449-39468 Msa1427900:CDS 50.0%
TGCTAGTAGTGGCAGTGCTA+AGG + tig0026227:39633-39652 Msa1427900:CDS 50.0%
CTATCACTTCAGCAGCCATC+AGG - tig0026227:39747-39766 None:intergenic 50.0%
CATGCACCATTGCGCGCTTA+TGG - tig0026227:38146-38165 None:intergenic 55.0%
CTTGAACAGATCCCTCTCCC+TGG - tig0026227:39222-39241 None:intergenic 55.0%
!! GGCTGATAAGAGGCATCGTC+GGG + tig0026227:39283-39302 Msa1427900:CDS 55.0%
TCTGCTGGCATTGCTGGTAC+TGG + tig0026227:39368-39387 Msa1427900:CDS 55.0%
AGCTGCAGCGTTGCTAGTAG+TGG + tig0026227:39622-39641 Msa1427900:CDS 55.0%
TGGCTGCTGAAGTGATAGCC+AGG + tig0026227:39749-39768 Msa1427900:three_prime_UTR 55.0%
GTAAGGAGCTCGGGAAGCTC+CGG - tig0026227:39341-39360 None:intergenic 60.0%
! GGCCCCCTTTTGTGCGTCTA+AGG + tig0026227:39436-39455 Msa1427900:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0026227 gene 36739 40080 36739 ID=Msa1427900;Name=Msa1427900
tig0026227 mRNA 36739 40080 36739 ID=Msa1427900-mRNA-1;Parent=Msa1427900;Name=Msa1427900-mRNA-1;_AED=0.02;_eAED=0.02;_QI=149|1|1|1|1|1|5|416|412
tig0026227 exon 36739 36953 36739 ID=Msa1427900-mRNA-1:exon:5655;Parent=Msa1427900-mRNA-1
tig0026227 exon 37042 37222 37042 ID=Msa1427900-mRNA-1:exon:5656;Parent=Msa1427900-mRNA-1
tig0026227 exon 37416 37830 37416 ID=Msa1427900-mRNA-1:exon:5657;Parent=Msa1427900-mRNA-1
tig0026227 exon 38664 38744 38664 ID=Msa1427900-mRNA-1:exon:5658;Parent=Msa1427900-mRNA-1
tig0026227 exon 39169 40080 39169 ID=Msa1427900-mRNA-1:exon:5659;Parent=Msa1427900-mRNA-1
tig0026227 five_prime_UTR 36739 36887 36739 ID=Msa1427900-mRNA-1:five_prime_utr;Parent=Msa1427900-mRNA-1
tig0026227 CDS 36888 36953 36888 ID=Msa1427900-mRNA-1:cds;Parent=Msa1427900-mRNA-1
tig0026227 CDS 37042 37222 37042 ID=Msa1427900-mRNA-1:cds;Parent=Msa1427900-mRNA-1
tig0026227 CDS 37416 37830 37416 ID=Msa1427900-mRNA-1:cds;Parent=Msa1427900-mRNA-1
tig0026227 CDS 38664 38744 38664 ID=Msa1427900-mRNA-1:cds;Parent=Msa1427900-mRNA-1
tig0026227 CDS 39169 39664 39169 ID=Msa1427900-mRNA-1:cds;Parent=Msa1427900-mRNA-1
tig0026227 three_prime_UTR 39665 40080 39665 ID=Msa1427900-mRNA-1:three_prime_utr;Parent=Msa1427900-mRNA-1
Gene Sequence

>Msa1427900

ATGATGATTCAGAAACTTACTTTGATGGCTTCTCATGGATTTCCATCTCAAGAATATGCCATGAAGGGTTGTCAACAATTGGTGCCTTGTTATGCACCAAAACCAGATATTATTAGATATCAGAGTCCAAATCTTAGGTTAAATTCATCTGATGAATCAAGAATGACATCAAAAGAGTGGTTCAATTCAAATCAGTTTGTTGATTTTGATTTGCCAGCTTTAAAGCCAATGGTTATTGATGTACAAGCAACTTGTCCAAGCACTATACTTTTGAGCTTTGGCGTCGTTGATCAATGCACCGAGCATGATAAAACTTCACAGTGTATCACATCTAAGACTGCTGAAGCAGGTGTAGATGGTATTCGTAAAGCTTTGTTGTCTGACTTGATGGGTTTGCAACTTTCAGGGATTAATATACCTCAAATATCATTGCATCCTCTCATCTACCCAAATAGGACTTTCTACATCTCGAAGCCTTTGCTTGATTTTTTTCAAGATTCAGCCCTTAGTTCAAAAATTACTGTTCATCTAAATGGTCAAGTCACGTTTATGGGTACTGAAATTGAGATGAAAGATTTTCTTGCTATAGTTGCTGAGTCATACGTATCAAAACGCACACATACAGGCGAAAAACAGTCTATGCTTGTTCCATACTTCACTAGGCTGAATATAAATGAAGTAGAGGCCAGAAGCATTTCCCCCACATTGGATATTCACTCTACACTGACCATTCCTTTAAAAAGTCCGAAGAAAGTCAAAGCCAATCCATCACGAAAAAAGAAAAAGAAAGTAGCCAGGGAGAGGGATCTGTTCAAGAAGAACTACATTCATGCATGTGAGAACCTTCTGTTCTTGATGGCTGATAAGAGGCATCGTCGGGAAACAGCAGTTCTTTCACTGAAGAAATCAGGTCCGGAGCTTCCCGAGCTCCTTACACAATTCTCTGCTGGCATTGCTGGTACTGGCCTTGCTGTCGTGCTATCTGTGATCTGCAAACTAGCTTGCGGAAGGGCCCCCTTTTGTGCGTCTAAGGTCTTCAACACAGGGTTGGGTTTTGGGCTTATTTGGCTTTCTTGGGGAGTAAATAAGCTGAGGGATACAATTGTTAACATAAGCAAGAATGCTGGAAAGATGGGATTGAAAGATGAGGAAATGATTCAAAAAGTGGATAAGAGTCTAAAAGAAGTTTACTTTAGAGCTGCAGCGTTGCTAGTAGTGGCAGTGCTAAGGCTTGCTTGA

Protein sequence

>Msa1427900

MMIQKLTLMASHGFPSQEYAMKGCQQLVPCYAPKPDIIRYQSPNLRLNSSDESRMTSKEWFNSNQFVDFDLPALKPMVIDVQATCPSTILLSFGVVDQCTEHDKTSQCITSKTAEAGVDGIRKALLSDLMGLQLSGINIPQISLHPLIYPNRTFYISKPLLDFFQDSALSSKITVHLNGQVTFMGTEIEMKDFLAIVAESYVSKRTHTGEKQSMLVPYFTRLNINEVEARSISPTLDIHSTLTIPLKSPKKVKANPSRKKKKKVARERDLFKKNYIHACENLLFLMADKRHRRETAVLSLKKSGPELPELLTQFSAGIAGTGLAVVLSVICKLACGRAPFCASKVFNTGLGFGLIWLSWGVNKLRDTIVNISKNAGKMGLKDEEMIQKVDKSLKEVYFRAAALLVVAVLRLA*