AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0624890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624890 MtrunA17_Chr4g0026951 94.661 768 32 3 1 759 1 768 0.0 1385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0624890 AT3G16000.1 43.528 703 370 7 1 682 1 697 5.22e-147 447

Find 119 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATGGTTTCTCCATTTC+AGG 0.199946 4_3:-3672760 None:intergenic
CAAGAGAACGTTTCTGTTAA+TGG 0.203507 4_3:+3669292 Msa0624890:CDS
TTCTTTGAACAACGATTTAC+AGG 0.220730 4_3:+3674558 Msa0624890:CDS
AGAGAGCAGAGGGAAGAAAT+TGG 0.259658 4_3:+3674858 Msa0624890:CDS
GGAGCTGCTTGGTGGTTCTA+TGG 0.294399 4_3:-3669217 None:intergenic
AGCATTGGATAATTCATCTT+TGG 0.295929 4_3:-3673783 None:intergenic
ATCATATCTTCTGGTCTGTT+GGG 0.298617 4_3:+3672814 Msa0624890:CDS
CTTTGCCTTTCCAAGTAGTT+TGG 0.309873 4_3:-3673429 None:intergenic
GTGCAAAGATCTTGAGCTTC+AGG 0.312959 4_3:+3674267 Msa0624890:CDS
TCTCTTCAGACTTCAACTTT+TGG 0.316670 4_3:-3673970 None:intergenic
TGCACTTACAACGACTTCTT+TGG 0.317800 4_3:-3675121 None:intergenic
TACAACGACTTCTTTGGTTT+CGG 0.328405 4_3:-3675115 None:intergenic
TTGCATTTCTTTGTTCTGTA+AGG 0.330684 4_3:-3674762 None:intergenic
GAAGAAGAAGGGAAGAGAAA+TGG 0.331116 4_3:-3669176 None:intergenic
CTTTCTTTGATTCATTATCT+AGG 0.341810 4_3:-3674141 None:intergenic
AACGTTCTCTTGTTGCATAT+TGG 0.348683 4_3:-3669281 None:intergenic
AAGAGAACGTTTCTGTTAAT+GGG 0.356090 4_3:+3669293 Msa0624890:CDS
ATTAATTGAGATCTACAAAA+AGG 0.357996 4_3:+3674489 Msa0624890:CDS
AAGAGTACTGTCACCAGTTT+GGG 0.358487 4_3:+3673491 Msa0624890:CDS
GAAGAAATTGGAAGAGGAAT+TGG 0.359838 4_3:+3674870 Msa0624890:CDS
TAGAAAGGATCACCGAATTT+CGG 0.364977 4_3:-3674672 None:intergenic
GTTATTATTCTCAAGAGTTA+AGG 0.365187 4_3:-3673906 None:intergenic
ATCTGAGCTCGCCGAAGTTA+AGG 0.367535 4_3:+3674303 Msa0624890:CDS
TGGATAATTCATCTTTGGTT+TGG 0.368506 4_3:-3673778 None:intergenic
GTGTCTCTTCTGAATGGAAT+TGG 0.373150 4_3:+3672790 Msa0624890:CDS
CAAGATTCTCTTGAGTAACT+TGG 0.375297 4_3:-3674186 None:intergenic
TCCTTTGTGTCTCTTCTGAA+TGG 0.376856 4_3:+3672784 Msa0624890:CDS
AAGAAGAAGGGAAGAGAAAT+GGG 0.376997 4_3:-3669175 None:intergenic
TTCATCTTTGGTTTGGTCAT+AGG 0.377065 4_3:-3673771 None:intergenic
AAAGAGTACTGTCACCAGTT+TGG 0.379797 4_3:+3673490 Msa0624890:CDS
GTTCATTTCATCTAGTGATT+TGG 0.384110 4_3:-3674650 None:intergenic
AATCATATCTTCTGGTCTGT+TGG 0.389869 4_3:+3672813 Msa0624890:CDS
CAACGATTTACAGGCTTTGA+AGG 0.401530 4_3:+3674567 Msa0624890:CDS
GAATTCATCCCTTGCAGAAA+AGG 0.404773 4_3:+3673721 Msa0624890:CDS
AAGAAATGACTCTACTGAAC+TGG 0.411333 4_3:+3674216 Msa0624890:CDS
TGGACAGGCAGCACCTGAAA+TGG 0.426569 4_3:+3672747 Msa0624890:intron
ACTGCCGATGCCGCTGTTGA+AGG 0.430461 4_3:+3669347 Msa0624890:CDS
AGATGAAATGAACCGAAATT+CGG 0.435411 4_3:+3674660 Msa0624890:CDS
GGTACTTTGCAGCTCTTCTT+CGG 0.439223 4_3:-3674416 None:intergenic
TCTTTGTTCTGTAAGGTACT+TGG 0.441168 4_3:-3674755 None:intergenic
GTCTGAAGAGAAGGCCACTT+TGG 0.441380 4_3:+3673982 Msa0624890:CDS
GGAATTGGAATCATATCTTC+TGG 0.443046 4_3:+3672805 Msa0624890:CDS
GTCACGAAGAACTGTTGAAA+TGG 0.446236 4_3:+3674612 Msa0624890:CDS
CGAGAGCAACATACCACAAC+GGG 0.451068 4_3:-3669245 None:intergenic
CAAGAAGAGGAAGAAGAAGA+AGG 0.460952 4_3:-3669188 None:intergenic
AAGAAGTGAATATGATGTAT+TGG 0.464888 4_3:+3673931 Msa0624890:CDS
CCTCTTCTAATTCACTAGAA+AGG 0.465124 4_3:-3674687 None:intergenic
CAACATGTTCTTTGTCCTTG+AGG 0.467033 4_3:-3673688 None:intergenic
CAACCGCAATATTTCACCCT+TGG 0.468447 4_3:-3674899 None:intergenic
GGCAGTGTTGAATTTGAGAA+AGG 0.471651 4_3:-3669330 None:intergenic
TCATATCTTCTGGTCTGTTG+GGG 0.477091 4_3:+3672815 Msa0624890:CDS
CGATCTTACAAAGGCTGATA+CGG 0.477419 4_3:+3673580 Msa0624890:CDS
AGAGACACAAAGGAAGTAGA+TGG 0.480663 4_3:-3672775 None:intergenic
GAAGGCCACTTTGGATGCTA+AGG 0.485310 4_3:+3673991 Msa0624890:CDS
TGAAAACAAATTGAAAGAAA+AGG 0.486501 4_3:+3673616 Msa0624890:CDS
TTTGAAGGAGCAAGTATTGA+AGG 0.492700 4_3:+3674582 Msa0624890:CDS
AATTCCTTCAACAGCGGCAT+CGG 0.493404 4_3:-3669351 None:intergenic
GAGAGAGTTTAGAGAGCAGA+GGG 0.494703 4_3:+3674848 Msa0624890:CDS
AAAAGCCAAGAGGAACTAGA+AGG 0.496547 4_3:+3673842 Msa0624890:CDS
CATAACCTCATTACTAGACT+TGG 0.503381 4_3:+3674817 Msa0624890:CDS
ATCCCTTGCAGAAAAGGAGT+TGG 0.505112 4_3:+3673727 Msa0624890:CDS
GAGCTGCTTGGTGGTTCTAT+GGG 0.506268 4_3:-3669216 None:intergenic
ACTAGAAGGAAAAGATTCCT+TGG 0.509288 4_3:+3673856 Msa0624890:CDS
TTGAATATGAAAATGAGCAT+TGG 0.513802 4_3:-3673798 None:intergenic
GGGAGCACGGAGCTGCTTGG+TGG 0.514022 4_3:-3669225 None:intergenic
AGGAAAAGATTCCTTGGTGA+TGG 0.515184 4_3:+3673862 Msa0624890:CDS
GAGGAACAAACCAAACTACT+TGG 0.517707 4_3:+3673419 Msa0624890:CDS
CTTTGCCAAGTCTAGTAATG+AGG 0.519176 4_3:-3674822 None:intergenic
CAGAGGGAAGAAATTGGAAG+AGG 0.524169 4_3:+3674864 Msa0624890:CDS
AGTTGTTAACAATGAGCAGC+AGG 0.529237 4_3:+3675077 Msa0624890:CDS
AACGGGAGCACGGAGCTGCT+TGG 0.532674 4_3:-3669228 None:intergenic
TGAATATGATGTATTGGAGA+AGG 0.538059 4_3:+3673937 Msa0624890:CDS
TACTGTCACCAGTTTGGGAA+AGG 0.541631 4_3:+3673496 Msa0624890:CDS
GCAGTGTTGAATTTGAGAAA+GGG 0.546459 4_3:-3669329 None:intergenic
AGAGGAATTGGCTTCTGCCA+AGG 0.547273 4_3:+3674882 Msa0624890:CDS
AACTGTTGAAATGGATCTCG+AGG 0.549243 4_3:+3674621 Msa0624890:CDS
AGAGAGAGTTTAGAGAGCAG+AGG 0.552368 4_3:+3674847 Msa0624890:CDS
AAGAGAAATGGGTATAGAAG+CGG 0.554477 4_3:-3669164 None:intergenic
AAAGTTGAAGTCTGAAGAGA+AGG 0.558645 4_3:+3673973 Msa0624890:CDS
CCTTTCTAGTGAATTAGAAG+AGG 0.560312 4_3:+3674687 Msa0624890:CDS
AAGAAGAGGAAGAAGAAGAA+GGG 0.560423 4_3:-3669187 None:intergenic
GCAGCTCCGTGCTCCCGTTG+TGG 0.560542 4_3:+3669232 Msa0624890:CDS
AAGAGCAGGTCGTTTCGTTG+AGG 0.574604 4_3:+3673363 Msa0624890:CDS
AACATACCACAACGGGAGCA+CGG 0.575250 4_3:-3669238 None:intergenic
GAGGAATTGGCTTCTGCCAA+GGG 0.577429 4_3:+3674883 Msa0624890:CDS
AAATGAATCAAGCGAAAACC+AGG 0.577858 4_3:+3674072 Msa0624890:CDS
CTGCCAAGGGTGAAATATTG+CGG 0.583288 4_3:+3674896 Msa0624890:CDS
TAAGGAGCTGATAACAGTAA+AGG 0.584606 4_3:+3674378 Msa0624890:CDS
GTTGAAGTTATCGAACGAGC+AGG 0.586669 4_3:+3673397 Msa0624890:CDS
TCTGCTTAGTGAAGACCTCA+AGG 0.589218 4_3:+3673673 Msa0624890:CDS
TTAAATCAGCGATGACAACC+TGG 0.590178 4_3:-3674090 None:intergenic
ACAAACCAAACTACTTGGAA+AGG 0.594982 4_3:+3673424 Msa0624890:CDS
ACAAAGAAATGCAAGCAAAG+AGG 0.598046 4_3:+3674771 Msa0624890:CDS
CATATCTTCTGGTCTGTTGG+GGG 0.603076 4_3:+3672816 Msa0624890:CDS
TCTATGGGAACGACAAGAAG+AGG 0.603571 4_3:-3669201 None:intergenic
AAGAAGTCGTTGTAAGTGCA+CGG 0.605490 4_3:+3675124 Msa0624890:CDS
ATGGGTATAGAAGCGGAGAG+TGG 0.608813 4_3:-3669157 None:intergenic
GATTTAACCAAAGAACGAGA+AGG 0.619090 4_3:+3674106 Msa0624890:CDS
CTGTAGCGAATCCTTAACTT+CGG 0.622154 4_3:-3674314 None:intergenic
TGAATTTAGTTCCATCACCA+AGG 0.625407 4_3:-3673873 None:intergenic
TCCATTCAGAAGAGACACAA+AGG 0.626993 4_3:-3672785 None:intergenic
CAAACTACTTGGAAAGGCAA+AGG 0.627372 4_3:+3673430 Msa0624890:CDS
AGACGAGCTTCATCAGCTAA+CGG 0.631119 4_3:+3674030 Msa0624890:CDS
ACAGATGAGCAACAAACTGA+AGG 0.633690 4_3:+3673334 Msa0624890:intron
TGTAGTCGTTAGTTCATGAG+AGG 0.649860 4_3:-3674437 None:intergenic
CAAAACCTTAGCATCCAAAG+TGG 0.651075 4_3:-3673996 None:intergenic
GAAGTTATCGAACGAGCAGG+AGG 0.659936 4_3:+3673400 Msa0624890:CDS
TCTCCTTACAGAAGAAAGTG+AGG 0.661466 4_3:+3672604 Msa0624890:intron
AAAGGCTGAAGTCACATCAG+AGG 0.661801 4_3:+3674507 Msa0624890:CDS
TGAAAGAATTCCTTCAACAG+CGG 0.674803 4_3:-3669357 None:intergenic
ACTACACTTGAAACCCGCGA+TGG 0.675763 4_3:+3674454 Msa0624890:CDS
TGATGATGCAAAACTCGAGG+CGG 0.676692 4_3:+3674345 Msa0624890:CDS
ACTTGATGATGCAAAACTCG+AGG 0.683771 4_3:+3674342 Msa0624890:CDS
GGAGCAAGTATTGAAGGACA+AGG 0.687727 4_3:+3674588 Msa0624890:CDS
AAGTGAGGTGAAGATACCAG+AGG 0.692163 4_3:+3672619 Msa0624890:CDS
ACTTGAAGTCGATCTTACAA+AGG 0.692206 4_3:+3673571 Msa0624890:CDS
TGAAATACTGAAAAGCCAAG+AGG 0.694568 4_3:+3673832 Msa0624890:CDS
TGTTGAAATGGATCTCGAGG+AGG 0.699159 4_3:+3674624 Msa0624890:CDS
ACGAGAGCAACATACCACAA+CGG 0.704981 4_3:-3669246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACAACAATAATTTAAT+TGG - chr4_3:3669439-3669458 None:intergenic 10.0%
!!! TCAAATATTTTAATGTTTAA+TGG + chr4_3:3669955-3669974 Msa0624890:intron 10.0%
!!! ATTTGTATTACTTTTTATAA+TGG + chr4_3:3671291-3671310 Msa0624890:intron 10.0%
!!! TTAAAATGGTTAATTTTTAA+AGG + chr4_3:3673262-3673281 Msa0624890:intron 10.0%
!!! AATATTTTAATGTTTAATGG+AGG + chr4_3:3669958-3669977 Msa0624890:intron 15.0%
!!! CTTTAAAATACAGTTTTAAA+AGG - chr4_3:3670052-3670071 None:intergenic 15.0%
!!! TACAAAATAGTATTTTAGTT+AGG + chr4_3:3670414-3670433 Msa0624890:intron 15.0%
!!! TGTGTTTTTAAAATATTTTG+CGG + chr4_3:3670886-3670905 Msa0624890:intron 15.0%
!! AAAAGTAATACAAATTAGTT+TGG - chr4_3:3671286-3671305 None:intergenic 15.0%
!!! TATTAGTTTTTTTGCAAAAT+AGG - chr4_3:3671632-3671651 None:intergenic 15.0%
!!! TTTGATAGTTAATTAACTAA+AGG - chr4_3:3672304-3672323 None:intergenic 15.0%
!!! TCTATCTAGTTTTTTTAAAA+TGG + chr4_3:3673248-3673267 Msa0624890:intron 15.0%
!! AATGTAATAAGAAACATACT+TGG - chr4_3:3669386-3669405 None:intergenic 20.0%
!!! ATTATGACATTATCTTGTTT+TGG + chr4_3:3669459-3669478 Msa0624890:intron 20.0%
!!! TTATGACATTATCTTGTTTT+GGG + chr4_3:3669460-3669479 Msa0624890:intron 20.0%
!!! ATTAATGTAGTTGATATTGT+TGG - chr4_3:3669866-3669885 None:intergenic 20.0%
!!! TTAATGTTAAGGGTATATTT+GGG + chr4_3:3670155-3670174 Msa0624890:intron 20.0%
!!! CTATTTTGTAACACTTTTAA+AGG - chr4_3:3670404-3670423 None:intergenic 20.0%
!!! TATTACTTTTTATAATGGAC+TGG + chr4_3:3671296-3671315 Msa0624890:intron 20.0%
!! CAAAGAAATATCTGATATTT+GGG - chr4_3:3671416-3671435 None:intergenic 20.0%
!! TCAAAGAAATATCTGATATT+TGG - chr4_3:3671417-3671436 None:intergenic 20.0%
!! CTGAAAAATTAGTTATAAGT+GGG + chr4_3:3671697-3671716 Msa0624890:intron 20.0%
!! AAAAGATTGGAAAAAAAGAT+TGG + chr4_3:3671916-3671935 Msa0624890:intron 20.0%
!! GAAAAAAAGATTGGAAAAAA+AGG + chr4_3:3671912-3671931 Msa0624890:intron 20.0%
!! TCTAGAAATAGAATATTATG+AGG + chr4_3:3672225-3672244 Msa0624890:intron 20.0%
!!! ACTTTCATTTATTTTCTTCA+AGG + chr4_3:3672253-3672272 Msa0624890:intron 20.0%
!! AGTAAAGTTATAGTTTAAAG+AGG + chr4_3:3673164-3673183 Msa0624890:intron 20.0%
!! TGAAAACAAATTGAAAGAAA+AGG + chr4_3:3673616-3673635 Msa0624890:CDS 20.0%
!!! TCTCAATTAATTCTTTTTGT+AGG - chr4_3:3674480-3674499 None:intergenic 20.0%
!! ATTAATTGAGATCTACAAAA+AGG + chr4_3:3674489-3674508 Msa0624890:CDS 20.0%
!!! TACTTTTGATTTTGAAGAAT+TGG - chr4_3:3674998-3675017 None:intergenic 20.0%
!!! AACTTTTGATTTTGAAGAAT+TGG - chr4_3:3674935-3674954 None:intergenic 20.0%
! ATATATCTCACATTACATAG+GGG - chr4_3:3669908-3669927 None:intergenic 25.0%
! CATATATCTCACATTACATA+GGG - chr4_3:3669909-3669928 None:intergenic 25.0%
! ACATATATCTCACATTACAT+AGG - chr4_3:3669910-3669929 None:intergenic 25.0%
! AACATTAACTATCGAGAAAA+GGG - chr4_3:3670143-3670162 None:intergenic 25.0%
! TAACATTAACTATCGAGAAA+AGG - chr4_3:3670144-3670163 None:intergenic 25.0%
! TTTCTCGATAGTTAATGTTA+AGG + chr4_3:3670144-3670163 Msa0624890:intron 25.0%
! TTCTCGATAGTTAATGTTAA+GGG + chr4_3:3670145-3670164 Msa0624890:intron 25.0%
!! GTTAATGTTAAGGGTATATT+TGG + chr4_3:3670154-3670173 Msa0624890:intron 25.0%
!! TAATGTTAAGGGTATATTTG+GGG + chr4_3:3670156-3670175 Msa0624890:intron 25.0%
! AAGACTAAAATTTCTATACG+CGG - chr4_3:3670453-3670472 None:intergenic 25.0%
! TTTAAAAATTAGCATCTGTG+TGG + chr4_3:3670863-3670882 Msa0624890:intron 25.0%
! ACTCTTTACTAGTTGTTAAT+TGG + chr4_3:3671163-3671182 Msa0624890:intron 25.0%
! AAATATCTGATATTTGGGTA+AGG - chr4_3:3671411-3671430 None:intergenic 25.0%
!! CCACTTATAACTAATTTTTC+AGG - chr4_3:3671699-3671718 None:intergenic 25.0%
! CCTGAAAAATTAGTTATAAG+TGG + chr4_3:3671696-3671715 Msa0624890:intron 25.0%
! TTGATACCACCTTAAAATTT+GGG - chr4_3:3671773-3671792 None:intergenic 25.0%
! TTTGATACCACCTTAAAATT+TGG - chr4_3:3671774-3671793 None:intergenic 25.0%
! AAAAAGATTGGAAAAAAAGG+TGG + chr4_3:3671928-3671947 Msa0624890:intron 25.0%
! TTAACTACCATACTATATGT+TGG + chr4_3:3672041-3672060 Msa0624890:intron 25.0%
! AGAATGAAATGAGAAGAATA+TGG + chr4_3:3672080-3672099 Msa0624890:intron 25.0%
! TAATTTCAATGAGAGAAAGT+GGG - chr4_3:3672116-3672135 None:intergenic 25.0%
! ATAATTTCAATGAGAGAAAG+TGG - chr4_3:3672117-3672136 None:intergenic 25.0%
! ATTGAAATTATTCAGCGAAA+AGG + chr4_3:3672126-3672145 Msa0624890:intron 25.0%
!!! TATTTCTAGATACGAATAGA+AGG - chr4_3:3672215-3672234 None:intergenic 25.0%
!! ATCTCCTTTTGACATATTAA+TGG - chr4_3:3672400-3672419 None:intergenic 25.0%
! TGATTCAAGAAAGGATAATT+TGG - chr4_3:3672425-3672444 None:intergenic 25.0%
! AATGCATGCATATACATATA+CGG - chr4_3:3672451-3672470 None:intergenic 25.0%
! TAGTTCACATCACAAAATTA+AGG - chr4_3:3672508-3672527 None:intergenic 25.0%
! TTCTAAACTTATTGCTTCTA+TGG + chr4_3:3672727-3672746 Msa0624890:intron 25.0%
!! CTTTTCAATTTCTCAAATCT+TGG + chr4_3:3673083-3673102 Msa0624890:intron 25.0%
!! ATGTGTTAGTCATATTTTAC+TGG + chr4_3:3673302-3673321 Msa0624890:intron 25.0%
! TTGAATATGAAAATGAGCAT+TGG - chr4_3:3673801-3673820 None:intergenic 25.0%
!! AATGCTCATTTTCATATTCA+AGG + chr4_3:3673800-3673819 Msa0624890:CDS 25.0%
!! ATGCTCATTTTCATATTCAA+GGG + chr4_3:3673801-3673820 Msa0624890:CDS 25.0%
! GTTATTATTCTCAAGAGTTA+AGG - chr4_3:3673909-3673928 None:intergenic 25.0%
! AAGAAGTGAATATGATGTAT+TGG + chr4_3:3673931-3673950 Msa0624890:CDS 25.0%
! CTTTCTTTGATTCATTATCT+AGG - chr4_3:3674144-3674163 None:intergenic 25.0%
AAGAGAACGTTTCTGTTAAT+GGG + chr4_3:3669293-3669312 Msa0624890:CDS 30.0%
CATATCAAATGTTCGTTGTA+AGG + chr4_3:3669657-3669676 Msa0624890:intron 30.0%
! GGAAATATGAGGTGTATTTT+TGG + chr4_3:3669678-3669697 Msa0624890:intron 30.0%
TTGATATTGTTGGAACTTAG+GGG - chr4_3:3669856-3669875 None:intergenic 30.0%
GTTGATATTGTTGGAACTTA+GGG - chr4_3:3669857-3669876 None:intergenic 30.0%
! AGTTGATATTGTTGGAACTT+AGG - chr4_3:3669858-3669877 None:intergenic 30.0%
ACATTAACTATCGAGAAAAG+GGG - chr4_3:3670142-3670161 None:intergenic 30.0%
TTAAATAAGCTCCTTGATCT+CGG + chr4_3:3670199-3670218 Msa0624890:intron 30.0%
TATAAAAATCACCGAGATCA+AGG - chr4_3:3670213-3670232 None:intergenic 30.0%
ACACTTCAAAAACTCTTTCT+TGG + chr4_3:3670336-3670355 Msa0624890:intron 30.0%
AGACTAAAATTTCTATACGC+GGG - chr4_3:3670452-3670471 None:intergenic 30.0%
AGAATCGAAATTGGGAAATT+GGG - chr4_3:3670497-3670516 None:intergenic 30.0%
TCCTTTATATTGGACATTAG+TGG + chr4_3:3671004-3671023 Msa0624890:intron 30.0%
ACCACTAATGTCCAATATAA+AGG - chr4_3:3671008-3671027 None:intergenic 30.0%
!! GACTTAGTTTGCATTAAACT+AGG - chr4_3:3671073-3671092 None:intergenic 30.0%
!! CAAGGGATTTATTTTCACAA+AGG - chr4_3:3671195-3671214 None:intergenic 30.0%
CTTTGTGAAAATAAATCCCT+TGG + chr4_3:3671193-3671212 Msa0624890:intron 30.0%
AATCCAAGAACAATGTTCAA+TGG + chr4_3:3671558-3671577 Msa0624890:intron 30.0%
CTAACTCAACCATACAAATT+TGG - chr4_3:3671744-3671763 None:intergenic 30.0%
CAAATTTGTATGGTTGAGTT+AGG + chr4_3:3671742-3671761 Msa0624890:intron 30.0%
! TTTTCCAATCTTTTTTTCCC+AGG - chr4_3:3671910-3671929 None:intergenic 30.0%
! AATCCGGTTTTTGTAAGATT+GGG + chr4_3:3671970-3671989 Msa0624890:intron 30.0%
TTTCCCTACCAATTCAAAAT+GGG + chr4_3:3672160-3672179 Msa0624890:intron 30.0%
! AAACCCATTTTGAATTGGTA+GGG - chr4_3:3672166-3672185 None:intergenic 30.0%
! TAAACCCATTTTGAATTGGT+AGG - chr4_3:3672167-3672186 None:intergenic 30.0%
! GGTTTAAACCCATTTTGAAT+TGG - chr4_3:3672171-3672190 None:intergenic 30.0%
AAGAAAAGAAGAATACTCAG+AGG - chr4_3:3672192-3672211 None:intergenic 30.0%
TCTTCAAGGATGTAAATAAC+TGG + chr4_3:3672267-3672286 Msa0624890:intron 30.0%
CAATAACAAAGTAGCAAATC+AGG - chr4_3:3672344-3672363 None:intergenic 30.0%
AGCTCCATTAATATGTCAAA+AGG + chr4_3:3672393-3672412 Msa0624890:intron 30.0%
TGTATATGCATGCATTGTTT+CGG + chr4_3:3672455-3672474 Msa0624890:intron 30.0%
ATCCAAAGGACAAAAACAAT+AGG - chr4_3:3672698-3672717 None:intergenic 30.0%
TAGAATACGTAAACATCCAA+AGG - chr4_3:3672712-3672731 None:intergenic 30.0%
TTGCAACAATAGAAACAGTA+AGG + chr4_3:3672878-3672897 Msa0624890:intron 30.0%
AATTTCTCAAATCTTGGTCT+CGG + chr4_3:3673089-3673108 Msa0624890:intron 30.0%
TATAGTTTAAAGAGGAAGTG+AGG + chr4_3:3673172-3673191 Msa0624890:intron 30.0%
ATAGTTTAAAGAGGAAGTGA+GGG + chr4_3:3673173-3673192 Msa0624890:intron 30.0%
! TCCTCTAGAAACATCAAAAA+GGG - chr4_3:3673208-3673227 None:intergenic 30.0%
! TTCCTCTAGAAACATCAAAA+AGG - chr4_3:3673209-3673228 None:intergenic 30.0%
TGGATAATTCATCTTTGGTT+TGG - chr4_3:3673781-3673800 None:intergenic 30.0%
! AGCATTGGATAATTCATCTT+TGG - chr4_3:3673786-3673805 None:intergenic 30.0%
TGAATATGATGTATTGGAGA+AGG + chr4_3:3673937-3673956 Msa0624890:CDS 30.0%
! GTTTTCGCTTGATTCATTTA+AGG - chr4_3:3674071-3674090 None:intergenic 30.0%
TTCTTTGAACAACGATTTAC+AGG + chr4_3:3674558-3674577 Msa0624890:CDS 30.0%
GTTCATTTCATCTAGTGATT+TGG - chr4_3:3674653-3674672 None:intergenic 30.0%
AGATGAAATGAACCGAAATT+CGG + chr4_3:3674660-3674679 Msa0624890:CDS 30.0%
! TAGCCTTAAAAATGAGAAAG+AGG + chr4_3:3674726-3674745 Msa0624890:CDS 30.0%
!! GAACCTCTTTCTCATTTTTA+AGG - chr4_3:3674732-3674751 None:intergenic 30.0%
TTGCATTTCTTTGTTCTGTA+AGG - chr4_3:3674765-3674784 None:intergenic 30.0%
! AGCATCTTCAATGTTTTCTT+GGG - chr4_3:3674797-3674816 None:intergenic 30.0%
AAGAGAAATGGGTATAGAAG+CGG - chr4_3:3669167-3669186 None:intergenic 35.0%
AAGAAGAAGGGAAGAGAAAT+GGG - chr4_3:3669178-3669197 None:intergenic 35.0%
AAGAAGAGGAAGAAGAAGAA+GGG - chr4_3:3669190-3669209 None:intergenic 35.0%
AACGTTCTCTTGTTGCATAT+TGG - chr4_3:3669284-3669303 None:intergenic 35.0%
CAAGAGAACGTTTCTGTTAA+TGG + chr4_3:3669292-3669311 Msa0624890:CDS 35.0%
! GCAGTGTTGAATTTGAGAAA+GGG - chr4_3:3669332-3669351 None:intergenic 35.0%
TGAAAGAATTCCTTCAACAG+CGG - chr4_3:3669360-3669379 None:intergenic 35.0%
!!! TGACATTATCTTGTTTTGGG+TGG + chr4_3:3669463-3669482 Msa0624890:intron 35.0%
!!! GACATTATCTTGTTTTGGGT+GGG + chr4_3:3669464-3669483 Msa0624890:intron 35.0%
!!! ACATTATCTTGTTTTGGGTG+GGG + chr4_3:3669465-3669484 Msa0624890:intron 35.0%
CTAACCAAGTGTCATAAAAC+CGG + chr4_3:3669539-3669558 Msa0624890:intron 35.0%
GTTCGTTGTAAGGAAATATG+AGG + chr4_3:3669667-3669686 Msa0624890:intron 35.0%
! TTTTGGTCGCATTATAAGTG+TGG + chr4_3:3669695-3669714 Msa0624890:intron 35.0%
TTTGGTCGCATTATAAGTGT+GGG + chr4_3:3669696-3669715 Msa0624890:intron 35.0%
AACATTCGGATCATCACATT+GGG - chr4_3:3669825-3669844 None:intergenic 35.0%
AAACATTCGGATCATCACAT+TGG - chr4_3:3669826-3669845 None:intergenic 35.0%
! GTGATGATCCGAATGTTTTA+AGG + chr4_3:3669828-3669847 Msa0624890:intron 35.0%
ACTCCTCTGATACTTTACTT+AGG + chr4_3:3670366-3670385 Msa0624890:intron 35.0%
! ATGCCTAAGTAAAGTATCAG+AGG - chr4_3:3670372-3670391 None:intergenic 35.0%
GAGAATCGAAATTGGGAAAT+TGG - chr4_3:3670498-3670517 None:intergenic 35.0%
GGAAATGGAGAATCGAAATT+GGG - chr4_3:3670505-3670524 None:intergenic 35.0%
CAATTTCGATTCTCCATTTC+CGG + chr4_3:3670504-3670523 Msa0624890:intron 35.0%
GAAGATGAAGACTGAAAAAG+AGG - chr4_3:3670542-3670561 None:intergenic 35.0%
AATTCAGGTACCTCTTTGAT+TGG + chr4_3:3670742-3670761 Msa0624890:intron 35.0%
! TACCTCTTTGATTGGTTACA+TGG + chr4_3:3670750-3670769 Msa0624890:intron 35.0%
GCAGACTAAGTTTCAAACTA+AGG - chr4_3:3670801-3670820 None:intergenic 35.0%
TGTGTCAGTGTCCTTTATAT+TGG + chr4_3:3670994-3671013 Msa0624890:intron 35.0%
TTGCATTAAACTAGGAAGCA+CGG - chr4_3:3671065-3671084 None:intergenic 35.0%
TTCCACTAGGAAAATCCATT+GGG - chr4_3:3671103-3671122 None:intergenic 35.0%
AGAGTAAGATTTCTCTCCAA+GGG - chr4_3:3671212-3671231 None:intergenic 35.0%
AAGAGTAAGATTTCTCTCCA+AGG - chr4_3:3671213-3671232 None:intergenic 35.0%
CTATTTCATCTGTCCATTTG+AGG - chr4_3:3671249-3671268 None:intergenic 35.0%
TGTCCATTGAACATTGTTCT+TGG - chr4_3:3671564-3671583 None:intergenic 35.0%
ACAATGTTCAATGGACAGTT+TGG + chr4_3:3671567-3671586 Msa0624890:intron 35.0%
CAATGTTCAATGGACAGTTT+GGG + chr4_3:3671568-3671587 Msa0624890:intron 35.0%
! ATTTTCTCAGAGTCTCACAT+TGG + chr4_3:3671662-3671681 Msa0624890:intron 35.0%
! AAATTTGGCTTACAAGGTGA+GGG - chr4_3:3671729-3671748 None:intergenic 35.0%
! CCATACAAATTTGGCTTACA+AGG - chr4_3:3671735-3671754 None:intergenic 35.0%
CCTTGTAAGCCAAATTTGTA+TGG + chr4_3:3671732-3671751 Msa0624890:intron 35.0%
! TAGGCACAACCCAAATTTTA+AGG + chr4_3:3671761-3671780 Msa0624890:intron 35.0%
AAAGTTTATCCAAGATCCGT+CGG + chr4_3:3671791-3671810 Msa0624890:intron 35.0%
ACACTCCAAATATTCAATCC+TGG + chr4_3:3671841-3671860 Msa0624890:intron 35.0%
CACTCCAAATATTCAATCCT+GGG + chr4_3:3671842-3671861 Msa0624890:intron 35.0%
ACTCCAAATATTCAATCCTG+GGG + chr4_3:3671843-3671862 Msa0624890:intron 35.0%
GTGTGTTAAGAGTCTCAAAT+TGG + chr4_3:3671873-3671892 Msa0624890:intron 35.0%
AAATTGGATGAGATATGACC+TGG + chr4_3:3671889-3671908 Msa0624890:intron 35.0%
AATTGGATGAGATATGACCT+GGG + chr4_3:3671890-3671909 Msa0624890:intron 35.0%
ATGACCTGGGAAAAAAAGAT+TGG + chr4_3:3671903-3671922 Msa0624890:intron 35.0%
AGATTGGAAAAAAAGGTGGT+AGG + chr4_3:3671932-3671951 Msa0624890:intron 35.0%
! CAATCCGGTTTTTGTAAGAT+TGG + chr4_3:3671969-3671988 Msa0624890:intron 35.0%
GAACCCAATCTTACAAAAAC+CGG - chr4_3:3671976-3671995 None:intergenic 35.0%
! GGTTTTTGTAAGATTGGGTT+CGG + chr4_3:3671975-3671994 Msa0624890:intron 35.0%
! AAACGTTCCATGTGATGTTT+TGG + chr4_3:3672011-3672030 Msa0624890:intron 35.0%
ACTACCATACTATATGTTGG+TGG + chr4_3:3672044-3672063 Msa0624890:intron 35.0%
TCAACCACCAACATATAGTA+TGG - chr4_3:3672051-3672070 None:intergenic 35.0%
GTTTCCCTACCAATTCAAAA+TGG + chr4_3:3672159-3672178 Msa0624890:intron 35.0%
ACAAAGTAGCAAATCAGGAA+GGG - chr4_3:3672339-3672358 None:intergenic 35.0%
AACAAAGTAGCAAATCAGGA+AGG - chr4_3:3672340-3672359 None:intergenic 35.0%
ATACGGTCATGATTCAAGAA+AGG - chr4_3:3672434-3672453 None:intergenic 35.0%
ACATCACAAAATTAAGGACG+TGG - chr4_3:3672502-3672521 None:intergenic 35.0%
! CTGTTTAGTGAAGTATCACT+TGG + chr4_3:3672548-3672567 Msa0624890:intron 35.0%
ACTTTCTTCTGTAAGGAGAA+TGG - chr4_3:3672603-3672622 None:intergenic 35.0%
ATACCAGAGGATAAAAAGCT+AGG + chr4_3:3672632-3672651 Msa0624890:CDS 35.0%
!!! TGCCTATTGTTTTTGTCCTT+TGG + chr4_3:3672693-3672712 Msa0624890:intron 35.0%
AACTTATTGCTTCTATGGAC+AGG + chr4_3:3672732-3672751 Msa0624890:intron 35.0%
GGAATTGGAATCATATCTTC+TGG + chr4_3:3672805-3672824 Msa0624890:CDS 35.0%
AATCATATCTTCTGGTCTGT+TGG + chr4_3:3672813-3672832 Msa0624890:CDS 35.0%
ATCATATCTTCTGGTCTGTT+GGG + chr4_3:3672814-3672833 Msa0624890:CDS 35.0%
GAAAACCAGTAAGACATGTA+TGG + chr4_3:3672927-3672946 Msa0624890:intron 35.0%
GCACAAACATTTCAGATTGA+CGG + chr4_3:3672983-3673002 Msa0624890:intron 35.0%
!!! TCCCTTTTTGATGTTTCTAG+AGG + chr4_3:3673204-3673223 Msa0624890:intron 35.0%
ACAAACCAAACTACTTGGAA+AGG + chr4_3:3673424-3673443 Msa0624890:CDS 35.0%
GCTAAAAAGCGAGAAAAGTT+TGG + chr4_3:3673520-3673539 Msa0624890:CDS 35.0%
ACTTGAAGTCGATCTTACAA+AGG + chr4_3:3673571-3673590 Msa0624890:CDS 35.0%
!! TTCATCTTTGGTTTGGTCAT+AGG - chr4_3:3673774-3673793 None:intergenic 35.0%
TGAAATACTGAAAAGCCAAG+AGG + chr4_3:3673832-3673851 Msa0624890:CDS 35.0%
ACTAGAAGGAAAAGATTCCT+TGG + chr4_3:3673856-3673875 Msa0624890:CDS 35.0%
! TGAATTTAGTTCCATCACCA+AGG - chr4_3:3673876-3673895 None:intergenic 35.0%
! TCTCTTCAGACTTCAACTTT+TGG - chr4_3:3673973-3673992 None:intergenic 35.0%
AAAGTTGAAGTCTGAAGAGA+AGG + chr4_3:3673973-3673992 Msa0624890:CDS 35.0%
AAATGAATCAAGCGAAAACC+AGG + chr4_3:3674072-3674091 Msa0624890:CDS 35.0%
CAAGATTCTCTTGAGTAACT+TGG - chr4_3:3674189-3674208 None:intergenic 35.0%
AAGAAATGACTCTACTGAAC+TGG + chr4_3:3674216-3674235 Msa0624890:CDS 35.0%
TAAGGAGCTGATAACAGTAA+AGG + chr4_3:3674378-3674397 Msa0624890:CDS 35.0%
!! TTTGAAGGAGCAAGTATTGA+AGG + chr4_3:3674582-3674601 Msa0624890:CDS 35.0%
TAGAAAGGATCACCGAATTT+CGG - chr4_3:3674675-3674694 None:intergenic 35.0%
CCTCTTCTAATTCACTAGAA+AGG - chr4_3:3674690-3674709 None:intergenic 35.0%
! CCTTTCTAGTGAATTAGAAG+AGG + chr4_3:3674687-3674706 Msa0624890:CDS 35.0%
! TCTTTGTTCTGTAAGGTACT+TGG - chr4_3:3674758-3674777 None:intergenic 35.0%
ACAAAGAAATGCAAGCAAAG+AGG + chr4_3:3674771-3674790 Msa0624890:CDS 35.0%
! GAGCATCTTCAATGTTTTCT+TGG - chr4_3:3674798-3674817 None:intergenic 35.0%
CATAACCTCATTACTAGACT+TGG + chr4_3:3674817-3674836 Msa0624890:CDS 35.0%
GAAGAAATTGGAAGAGGAAT+TGG + chr4_3:3674870-3674889 Msa0624890:CDS 35.0%
! TACAACGACTTCTTTGGTTT+CGG - chr4_3:3675118-3675137 None:intergenic 35.0%
GAAGAAGAAGGGAAGAGAAA+TGG - chr4_3:3669179-3669198 None:intergenic 40.0%
CAAGAAGAGGAAGAAGAAGA+AGG - chr4_3:3669191-3669210 None:intergenic 40.0%
! GGCAGTGTTGAATTTGAGAA+AGG - chr4_3:3669333-3669352 None:intergenic 40.0%
AATGTCTTGGTCGATGATGA+CGG + chr4_3:3669495-3669514 Msa0624890:intron 40.0%
! GATGACGGTCTTAGAATTTG+TGG + chr4_3:3669510-3669529 Msa0624890:intron 40.0%
ACGGTCTTAGAATTTGTGGT+TGG + chr4_3:3669514-3669533 Msa0624890:intron 40.0%
CGGTCTTAGAATTTGTGGTT+GGG + chr4_3:3669515-3669534 Msa0624890:intron 40.0%
!! CGGTTTTATGACACTTGGTT+AGG - chr4_3:3669541-3669560 None:intergenic 40.0%
!! CAAACCGGTTTTATGACACT+TGG - chr4_3:3669546-3669565 None:intergenic 40.0%
!! TAAAACCGGTTTGTGATGTG+AGG + chr4_3:3669553-3669572 Msa0624890:intron 40.0%
GAGTGACTCGTATACTTATG+TGG + chr4_3:3669769-3669788 Msa0624890:intron 40.0%
TAGGGGAGCCTTAAAACATT+CGG - chr4_3:3669839-3669858 None:intergenic 40.0%
! TGTTTAATGGAGGTGCATTG+TGG + chr4_3:3669968-3669987 Msa0624890:intron 40.0%
! GTTTAATGGAGGTGCATTGT+GGG + chr4_3:3669969-3669988 Msa0624890:intron 40.0%
GTTGAATTGTCATTACGCGA+CGG - chr4_3:3670012-3670031 None:intergenic 40.0%
CTATGAGTGTCATGCTTCTT+AGG - chr4_3:3670244-3670263 None:intergenic 40.0%
! CTAAGAAGCATGACACTCAT+AGG + chr4_3:3670242-3670261 Msa0624890:intron 40.0%
CGGAAATGGAGAATCGAAAT+TGG - chr4_3:3670506-3670525 None:intergenic 40.0%
AAAGAGGCGAATTATGAGAC+CGG - chr4_3:3670526-3670545 None:intergenic 40.0%
ACATCAGCATCCACAAATTC+AGG + chr4_3:3670727-3670746 Msa0624890:intron 40.0%
!! CAAAGAGGTACCTGAATTTG+TGG - chr4_3:3670740-3670759 None:intergenic 40.0%
CACCATGTAACCAATCAAAG+AGG - chr4_3:3670755-3670774 None:intergenic 40.0%
ACTAAGTCATGTGTACCCAA+TGG + chr4_3:3671085-3671104 Msa0624890:intron 40.0%
!! TACCCAATGGATTTTCCTAG+TGG + chr4_3:3671098-3671117 Msa0624890:intron 40.0%
CTTCCACTAGGAAAATCCAT+TGG - chr4_3:3671104-3671123 None:intergenic 40.0%
! GTTGCTTTATCAGCCTCAAA+TGG + chr4_3:3671233-3671252 Msa0624890:intron 40.0%
TGAGTGAAACTCCATCACTA+TGG + chr4_3:3671325-3671344 Msa0624890:intron 40.0%
! CAAATTTGGCTTACAAGGTG+AGG - chr4_3:3671730-3671749 None:intergenic 40.0%
!! GCACAACCCAAATTTTAAGG+TGG + chr4_3:3671764-3671783 Msa0624890:intron 40.0%
AAGTTTATCCAAGATCCGTC+GGG + chr4_3:3671792-3671811 Msa0624890:intron 40.0%
CTCCAAATATTCAATCCTGG+GGG + chr4_3:3671844-3671863 Msa0624890:intron 40.0%
AAATATTCAATCCTGGGGGT+GGG + chr4_3:3671848-3671867 Msa0624890:intron 40.0%
GCTTCTCTCATCTTACAATC+CGG + chr4_3:3671954-3671973 Msa0624890:intron 40.0%
GGACACAACTAACAAAGCAA+GGG - chr4_3:3672481-3672500 None:intergenic 40.0%
TGGACACAACTAACAAAGCA+AGG - chr4_3:3672482-3672501 None:intergenic 40.0%
TCTCCTTACAGAAGAAAGTG+AGG + chr4_3:3672604-3672623 Msa0624890:intron 40.0%
TCACCTCACTTTCTTCTGTA+AGG - chr4_3:3672610-3672629 None:intergenic 40.0%
GTAGATGGTTTCTCCATTTC+AGG - chr4_3:3672763-3672782 None:intergenic 40.0%
AGAGACACAAAGGAAGTAGA+TGG - chr4_3:3672778-3672797 None:intergenic 40.0%
TCCTTTGTGTCTCTTCTGAA+TGG + chr4_3:3672784-3672803 Msa0624890:CDS 40.0%
TCCATTCAGAAGAGACACAA+AGG - chr4_3:3672788-3672807 None:intergenic 40.0%
GTGTCTCTTCTGAATGGAAT+TGG + chr4_3:3672790-3672809 Msa0624890:CDS 40.0%
TCATATCTTCTGGTCTGTTG+GGG + chr4_3:3672815-3672834 Msa0624890:CDS 40.0%
AAAGGCCATACATGTCTTAC+TGG - chr4_3:3672935-3672954 None:intergenic 40.0%
TAAGACATGTATGGCCTTTG+AGG + chr4_3:3672936-3672955 Msa0624890:intron 40.0%
AGAAGAGAGACATTCCTCAA+AGG - chr4_3:3672953-3672972 None:intergenic 40.0%
TGTCAGTGTCATACAAGTCT+CGG - chr4_3:3673039-3673058 None:intergenic 40.0%
ACAGATGAGCAACAAACTGA+AGG + chr4_3:3673334-3673353 Msa0624890:intron 40.0%
ACTGAAGGAAAAAGAAGAGC+AGG + chr4_3:3673349-3673368 Msa0624890:CDS 40.0%
GAGGAACAAACCAAACTACT+TGG + chr4_3:3673419-3673438 Msa0624890:CDS 40.0%
CTTTGCCTTTCCAAGTAGTT+TGG - chr4_3:3673432-3673451 None:intergenic 40.0%
CAAACTACTTGGAAAGGCAA+AGG + chr4_3:3673430-3673449 Msa0624890:CDS 40.0%
!! AAAGAGTACTGTCACCAGTT+TGG + chr4_3:3673490-3673509 Msa0624890:CDS 40.0%
!! AAGAGTACTGTCACCAGTTT+GGG + chr4_3:3673491-3673510 Msa0624890:CDS 40.0%
!!! TTTTAGCTCCTTTCCCAAAC+TGG - chr4_3:3673507-3673526 None:intergenic 40.0%
CGATCTTACAAAGGCTGATA+CGG + chr4_3:3673580-3673599 Msa0624890:CDS 40.0%
CAACATGTTCTTTGTCCTTG+AGG - chr4_3:3673691-3673710 None:intergenic 40.0%
GAATTCATCCCTTGCAGAAA+AGG + chr4_3:3673721-3673740 Msa0624890:CDS 40.0%
! TTCCAACTCCTTTTCTGCAA+GGG - chr4_3:3673732-3673751 None:intergenic 40.0%
! ATTCCAACTCCTTTTCTGCA+AGG - chr4_3:3673733-3673752 None:intergenic 40.0%
AAAAGCCAAGAGGAACTAGA+AGG + chr4_3:3673842-3673861 Msa0624890:CDS 40.0%
!!! CTTTTCCTTCTAGTTCCTCT+TGG - chr4_3:3673850-3673869 None:intergenic 40.0%
AGGAAAAGATTCCTTGGTGA+TGG + chr4_3:3673862-3673881 Msa0624890:CDS 40.0%
CAAAACCTTAGCATCCAAAG+TGG - chr4_3:3673999-3674018 None:intergenic 40.0%
TTAAATCAGCGATGACAACC+TGG - chr4_3:3674093-3674112 None:intergenic 40.0%
CTGTAGCGAATCCTTAACTT+CGG - chr4_3:3674317-3674336 None:intergenic 40.0%
!! ACTTGATGATGCAAAACTCG+AGG + chr4_3:3674342-3674361 Msa0624890:CDS 40.0%
TGTAGTCGTTAGTTCATGAG+AGG - chr4_3:3674440-3674459 None:intergenic 40.0%
! ATTCTTTTTGTAGGCCATCG+CGG - chr4_3:3674471-3674490 None:intergenic 40.0%
!! AGTCACATCAGAGGTTTTGA+AGG + chr4_3:3674516-3674535 Msa0624890:CDS 40.0%
! CAACGATTTACAGGCTTTGA+AGG + chr4_3:3674567-3674586 Msa0624890:CDS 40.0%
GTCACGAAGAACTGTTGAAA+TGG + chr4_3:3674612-3674631 Msa0624890:CDS 40.0%
AACTGTTGAAATGGATCTCG+AGG + chr4_3:3674621-3674640 Msa0624890:CDS 40.0%
CTTTGCCAAGTCTAGTAATG+AGG - chr4_3:3674825-3674844 None:intergenic 40.0%
AGTTGTTAACAATGAGCAGC+AGG + chr4_3:3675077-3675096 Msa0624890:CDS 40.0%
TGCACTTACAACGACTTCTT+TGG - chr4_3:3675124-3675143 None:intergenic 40.0%
AAGAAGTCGTTGTAAGTGCA+CGG + chr4_3:3675124-3675143 Msa0624890:CDS 40.0%
TCTATGGGAACGACAAGAAG+AGG - chr4_3:3669204-3669223 None:intergenic 45.0%
ACGAGAGCAACATACCACAA+CGG - chr4_3:3669249-3669268 None:intergenic 45.0%
AATTCCTTCAACAGCGGCAT+CGG - chr4_3:3669354-3669373 None:intergenic 45.0%
GTGGGGATACATGAATGTCT+TGG + chr4_3:3669482-3669501 Msa0624890:intron 45.0%
TGCCCCCACTTATTAACAGA+GGG + chr4_3:3669578-3669597 Msa0624890:intron 45.0%
ACCCCCTCTGTTAATAAGTG+GGG - chr4_3:3669584-3669603 None:intergenic 45.0%
CACCCCCTCTGTTAATAAGT+GGG - chr4_3:3669585-3669604 None:intergenic 45.0%
ACACCCCCTCTGTTAATAAG+TGG - chr4_3:3669586-3669605 None:intergenic 45.0%
! GGGGTGTCTATCTCGTTATA+GGG + chr4_3:3669599-3669618 Msa0624890:intron 45.0%
AAGCAACCACACATGTGAGT+TGG - chr4_3:3669798-3669817 None:intergenic 45.0%
AGCATGACACTCATAGGTTC+AGG + chr4_3:3670248-3670267 Msa0624890:intron 45.0%
GCATGACACTCATAGGTTCA+GGG + chr4_3:3670249-3670268 Msa0624890:intron 45.0%
CATGACACTCATAGGTTCAG+GGG + chr4_3:3670250-3670269 Msa0624890:intron 45.0%
GCGAATTATGAGACCGGAAA+TGG - chr4_3:3670520-3670539 None:intergenic 45.0%
GAAACGTTGTCTACGAACAC+GGG - chr4_3:3670572-3670591 None:intergenic 45.0%
GGAAACGTTGTCTACGAACA+CGG - chr4_3:3670573-3670592 None:intergenic 45.0%
GAGATATCGGGACTAAAGAG+AGG - chr4_3:3670676-3670695 None:intergenic 45.0%
AACGTCTGAGAGGGAGATAT+CGG - chr4_3:3670689-3670708 None:intergenic 45.0%
GTGCACAATCTCTTCACTTG+CGG - chr4_3:3671137-3671156 None:intergenic 45.0%
CAAGTGAAGAGATTGTGCAC+AGG + chr4_3:3671137-3671156 Msa0624890:intron 45.0%
AACTCCATCACTATGGTGCT+CGG + chr4_3:3671332-3671351 Msa0624890:intron 45.0%
AATGGACAGTTTGGGCAGAA+AGG + chr4_3:3671576-3671595 Msa0624890:intron 45.0%
CACCCCCAGGATTGAATATT+TGG - chr4_3:3671849-3671868 None:intergenic 45.0%
CAAATATTCAATCCTGGGGG+TGG + chr4_3:3671847-3671866 Msa0624890:intron 45.0%
AATATTCAATCCTGGGGGTG+GGG + chr4_3:3671849-3671868 Msa0624890:intron 45.0%
GCTGTGTCCAAAACATCACA+TGG - chr4_3:3672021-3672040 None:intergenic 45.0%
AAGTGAGGTGAAGATACCAG+AGG + chr4_3:3672619-3672638 Msa0624890:CDS 45.0%
!! TCGCCTAGCTTTTTATCCTC+TGG - chr4_3:3672638-3672657 None:intergenic 45.0%
AGAGGATAAAAAGCTAGGCG+AGG + chr4_3:3672637-3672656 Msa0624890:CDS 45.0%
CATATCTTCTGGTCTGTTGG+GGG + chr4_3:3672816-3672835 Msa0624890:CDS 45.0%
GTCAGTGTCATACAAGTCTC+GGG - chr4_3:3673038-3673057 None:intergenic 45.0%
! TCAAATCTTGGTCTCGGTGT+TGG + chr4_3:3673095-3673114 Msa0624890:intron 45.0%
GTTGAAGTTATCGAACGAGC+AGG + chr4_3:3673397-3673416 Msa0624890:CDS 45.0%
TACTGTCACCAGTTTGGGAA+AGG + chr4_3:3673496-3673515 Msa0624890:CDS 45.0%
TCTGCTTAGTGAAGACCTCA+AGG + chr4_3:3673673-3673692 Msa0624890:CDS 45.0%
ATCCCTTGCAGAAAAGGAGT+TGG + chr4_3:3673727-3673746 Msa0624890:CDS 45.0%
AGACGAGCTTCATCAGCTAA+CGG + chr4_3:3674030-3674049 Msa0624890:CDS 45.0%
GTGCAAAGATCTTGAGCTTC+AGG + chr4_3:3674267-3674286 Msa0624890:CDS 45.0%
! TGATGATGCAAAACTCGAGG+CGG + chr4_3:3674345-3674364 Msa0624890:CDS 45.0%
CGAGGCGGAAAAATTGACTA+AGG + chr4_3:3674360-3674379 Msa0624890:CDS 45.0%
GGTACTTTGCAGCTCTTCTT+CGG - chr4_3:3674419-3674438 None:intergenic 45.0%
! TTCTTTTTGTAGGCCATCGC+GGG - chr4_3:3674470-3674489 None:intergenic 45.0%
AAAGGCTGAAGTCACATCAG+AGG + chr4_3:3674507-3674526 Msa0624890:CDS 45.0%
!! GGAGCAAGTATTGAAGGACA+AGG + chr4_3:3674588-3674607 Msa0624890:CDS 45.0%
TGTTGAAATGGATCTCGAGG+AGG + chr4_3:3674624-3674643 Msa0624890:CDS 45.0%
AGAGAGAGTTTAGAGAGCAG+AGG + chr4_3:3674847-3674866 Msa0624890:CDS 45.0%
GAGAGAGTTTAGAGAGCAGA+GGG + chr4_3:3674848-3674867 Msa0624890:CDS 45.0%
AGAGAGCAGAGGGAAGAAAT+TGG + chr4_3:3674858-3674877 Msa0624890:CDS 45.0%
CAGAGGGAAGAAATTGGAAG+AGG + chr4_3:3674864-3674883 Msa0624890:CDS 45.0%
CTGCCAAGGGTGAAATATTG+CGG + chr4_3:3674896-3674915 Msa0624890:CDS 45.0%
CAACCGCAATATTTCACCCT+TGG - chr4_3:3674902-3674921 None:intergenic 45.0%
ATGGGTATAGAAGCGGAGAG+TGG - chr4_3:3669160-3669179 None:intergenic 50.0%
! GAGCTGCTTGGTGGTTCTAT+GGG - chr4_3:3669219-3669238 None:intergenic 50.0%
AACATACCACAACGGGAGCA+CGG - chr4_3:3669241-3669260 None:intergenic 50.0%
CGAGAGCAACATACCACAAC+GGG - chr4_3:3669248-3669267 None:intergenic 50.0%
GCAGTCCTCACATCACAAAC+CGG - chr4_3:3669561-3669580 None:intergenic 50.0%
CTGCCCCCACTTATTAACAG+AGG + chr4_3:3669577-3669596 Msa0624890:intron 50.0%
GCCCCCACTTATTAACAGAG+GGG + chr4_3:3669579-3669598 Msa0624890:intron 50.0%
CCCCCTCTGTTAATAAGTGG+GGG - chr4_3:3669583-3669602 None:intergenic 50.0%
CCCCCACTTATTAACAGAGG+GGG + chr4_3:3669580-3669599 Msa0624890:intron 50.0%
!! GGGGGTGTCTATCTCGTTAT+AGG + chr4_3:3669598-3669617 Msa0624890:intron 50.0%
!! GTGGGCTAGAAGTCTTACGT+TGG + chr4_3:3669714-3669733 Msa0624890:intron 50.0%
TGGTGTCCAACTCACATGTG+TGG + chr4_3:3669789-3669808 Msa0624890:intron 50.0%
GAAAAGGGGATATGCACAGC+TGG - chr4_3:3670128-3670147 None:intergenic 50.0%
TGTCCAATCCACACCAACGT+AGG - chr4_3:3670291-3670310 None:intergenic 50.0%
GACAACGTTTCCCTTCCTCT+CGG + chr4_3:3670581-3670600 Msa0624890:intron 50.0%
ACAACGTTTCCCTTCCTCTC+GGG + chr4_3:3670582-3670601 Msa0624890:intron 50.0%
TACGTCGTCTGCGAATAGAG+CGG - chr4_3:3670630-3670649 None:intergenic 50.0%
ACGTCTGAGAGGGAGATATC+GGG - chr4_3:3670688-3670707 None:intergenic 50.0%
TGACGAGACAACGTCTGAGA+GGG - chr4_3:3670698-3670717 None:intergenic 50.0%
ATGACGAGACAACGTCTGAG+AGG - chr4_3:3670699-3670718 None:intergenic 50.0%
TCTCCGTGTCTGTCTTGTGT+CGG + chr4_3:3671029-3671048 Msa0624890:intron 50.0%
GATCCGACACAAGACAGACA+CGG - chr4_3:3671035-3671054 None:intergenic 50.0%
GGACTTAGCATGCTTCCACT+AGG - chr4_3:3671116-3671135 None:intergenic 50.0%
TCTACCGAGCACCATAGTGA+TGG - chr4_3:3671339-3671358 None:intergenic 50.0%
TACCAGCCATCAGACTACTC+AGG + chr4_3:3671816-3671835 Msa0624890:intron 50.0%
GTGTGACCTGAGTAGTCTGA+TGG - chr4_3:3671825-3671844 None:intergenic 50.0%
AAGAGCAGGTCGTTTCGTTG+AGG + chr4_3:3673363-3673382 Msa0624890:CDS 50.0%
GAAGTTATCGAACGAGCAGG+AGG + chr4_3:3673400-3673419 Msa0624890:CDS 50.0%
GTCTGAAGAGAAGGCCACTT+TGG + chr4_3:3673982-3674001 Msa0624890:CDS 50.0%
! GAAGGCCACTTTGGATGCTA+AGG + chr4_3:3673991-3674010 Msa0624890:CDS 50.0%
ATCTGAGCTCGCCGAAGTTA+AGG + chr4_3:3674303-3674322 Msa0624890:CDS 50.0%
ACTACACTTGAAACCCGCGA+TGG + chr4_3:3674454-3674473 Msa0624890:CDS 50.0%
! AGAGGAATTGGCTTCTGCCA+AGG + chr4_3:3674882-3674901 Msa0624890:CDS 50.0%
! GAGGAATTGGCTTCTGCCAA+GGG + chr4_3:3674883-3674902 Msa0624890:CDS 50.0%
! GGAGCTGCTTGGTGGTTCTA+TGG - chr4_3:3669220-3669239 None:intergenic 55.0%
!! TTCAGGGGTACCTGCATGTC+TGG + chr4_3:3670265-3670284 Msa0624890:intron 55.0%
ATGTCTGGCCTACGTTGGTG+TGG + chr4_3:3670280-3670299 Msa0624890:intron 55.0%
TGGCCTACGTTGGTGTGGAT+TGG + chr4_3:3670285-3670304 Msa0624890:intron 55.0%
GAACAGAGTCCCGAGAGGAA+GGG - chr4_3:3670594-3670613 None:intergenic 55.0%
GACCTGAGTAGTCTGATGGC+TGG - chr4_3:3671821-3671840 None:intergenic 55.0%
TGGACAGGCAGCACCTGAAA+TGG + chr4_3:3672747-3672766 Msa0624890:intron 55.0%
CCAATACATGCCGGACACTC+AGG - chr4_3:3673013-3673032 None:intergenic 55.0%
CCTGAGTGTCCGGCATGTAT+TGG + chr4_3:3673010-3673029 Msa0624890:intron 55.0%
TCTCGGGCACCAATACATGC+CGG - chr4_3:3673022-3673041 None:intergenic 55.0%
!! CTCGGTGTTGGTGTCGTGTT+CGG + chr4_3:3673107-3673126 Msa0624890:intron 55.0%
ACTGCCGATGCCGCTGTTGA+AGG + chr4_3:3669347-3669366 Msa0624890:CDS 60.0%
CCAACGTAGGCCAGACATGC+AGG - chr4_3:3670278-3670297 None:intergenic 60.0%
CCTGCATGTCTGGCCTACGT+TGG + chr4_3:3670275-3670294 Msa0624890:intron 60.0%
CGAACAGAGTCCCGAGAGGA+AGG - chr4_3:3670595-3670614 None:intergenic 60.0%
ACTGCGAACAGAGTCCCGAG+AGG - chr4_3:3670599-3670618 None:intergenic 60.0%
TCTGATGGCTGGTAGCCCGA+CGG - chr4_3:3671810-3671829 None:intergenic 60.0%
TTAACACACTCCCCACCCCC+AGG - chr4_3:3671862-3671881 None:intergenic 60.0%
TGACGGTGTGCCTGAGTGTC+CGG + chr4_3:3673000-3673019 Msa0624890:intron 60.0%
! AACGGGAGCACGGAGCTGCT+TGG - chr4_3:3669231-3669250 None:intergenic 65.0%
GCTGGTAGCCCGACGGATCT+TGG - chr4_3:3671803-3671822 None:intergenic 65.0%
! GGGAGCACGGAGCTGCTTGG+TGG - chr4_3:3669228-3669247 None:intergenic 70.0%
GCAGCTCCGTGCTCCCGTTG+TGG + chr4_3:3669232-3669251 Msa0624890:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 3669116 3675182 3669116 ID=Msa0624890;Name=Msa0624890
chr4_3 mRNA 3669116 3675182 3669116 ID=Msa0624890-mRNA-1;Parent=Msa0624890;Name=Msa0624890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|0.5|0.6|5|0|759
chr4_3 exon 3669116 3669253 3669116 ID=Msa0624890-mRNA-1:exon:840;Parent=Msa0624890-mRNA-1
chr4_3 exon 3669275 3669386 3669275 ID=Msa0624890-mRNA-1:exon:841;Parent=Msa0624890-mRNA-1
chr4_3 exon 3672615 3672658 3672615 ID=Msa0624890-mRNA-1:exon:842;Parent=Msa0624890-mRNA-1
chr4_3 exon 3672754 3672894 3672754 ID=Msa0624890-mRNA-1:exon:843;Parent=Msa0624890-mRNA-1
chr4_3 exon 3673338 3675182 3673338 ID=Msa0624890-mRNA-1:exon:844;Parent=Msa0624890-mRNA-1
chr4_3 CDS 3669116 3669253 3669116 ID=Msa0624890-mRNA-1:cds;Parent=Msa0624890-mRNA-1
chr4_3 CDS 3669275 3669386 3669275 ID=Msa0624890-mRNA-1:cds;Parent=Msa0624890-mRNA-1
chr4_3 CDS 3672615 3672658 3672615 ID=Msa0624890-mRNA-1:cds;Parent=Msa0624890-mRNA-1
chr4_3 CDS 3672754 3672894 3672754 ID=Msa0624890-mRNA-1:cds;Parent=Msa0624890-mRNA-1
chr4_3 CDS 3673338 3675182 3673338 ID=Msa0624890-mRNA-1:cds;Parent=Msa0624890-mRNA-1
Gene Sequence

>Msa0624890

ATGGGTTTTGTTGGAGCAGCGAGTAGCACATCTTCATTGCTCCACTCTCCGCTTCTATACCCATTTCTCTTCCCTTCTTCTTCTTCCTCTTCTTGTCGTTCCCATAGAACCACCAAGCAGCTCCGTGCTCCCGTTGTGCAAGATCCAATATGCAACAAGAGAACGTTTCTGTTAATGGGTGTTGCTGTTCTTCCCTTTCTCAAATTCAACACTGCCGATGCCGCTGTTGAAGGAATTCTTTCATCACCAAAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGGTCTGTTGGGGGCTCTTTATGCACTTGCTCAGAAAGAAAAGTCGACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTAAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0624890

MGFVGAASSTSSLLHSPLLYPFLFPSSSSSSCRSHRTTKQLRAPVVQDPICNKRTFLLMGVAVLPFLKFNTADAAVEGILSSPKESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSGLLGALYALAQKEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLKNEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*