AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0036560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036560 MtrunA17_Chr1g0199101 96.170 470 16 2 1 469 71 539 0.0 928
Msa0036560 MtrunA17_Chr1g0163001 55.662 521 110 25 1 462 67 525 1.46e-150 439
Msa0036560 MtrunA17_Chr1g0162971 49.227 453 124 14 1 438 65 426 8.41e-116 347
Msa0036560 MtrunA17_Chr1g0210821 46.263 495 207 13 1 454 68 544 4.07e-114 347
Msa0036560 MtrunA17_Chr7g0263941 86.806 144 18 1 1 144 58 200 1.52e-94 291
Msa0036560 MtrunA17_Chr8g0342421 90.580 138 13 0 1 138 86 223 1.57e-94 295
Msa0036560 MtrunA17_Chr4g0040571 47.967 369 146 9 1 342 63 412 6.04e-94 293
Msa0036560 MtrunA17_Chr2g0330171 82.468 154 24 1 1 151 70 223 1.30e-93 291
Msa0036560 MtrunA17_Chr4g0029521 41.000 500 190 20 1 462 62 494 6.60e-93 290
Msa0036560 MtrunA17_Chr1g0181381 87.770 139 16 1 1 138 62 200 1.36e-91 287
Msa0036560 MtrunA17_Chr7g0268961 83.824 136 22 0 1 136 46 181 2.56e-89 281
Msa0036560 MtrunA17_Chr1g0191991 84.559 136 21 0 1 136 87 222 4.24e-89 281
Msa0036560 MtrunA17_Chr1g0151351 77.215 158 34 2 1 156 65 222 2.03e-88 277
Msa0036560 MtrunA17_Chr1g0185121 61.088 239 67 8 1 219 64 296 2.57e-88 276
Msa0036560 MtrunA17_Chr2g0326381 81.295 139 25 1 1 138 56 194 1.17e-83 263
Msa0036560 MtrunA17_Chr3g0141431 75.373 134 32 1 1 133 46 179 2.87e-77 247
Msa0036560 MtrunA17_Chr2g0324991 83.898 118 19 0 1 118 16 133 2.70e-73 228
Msa0036560 MtrunA17_Chr6g0479921 60.606 132 51 1 1 131 53 184 6.48e-58 198
Msa0036560 MtrunA17_Chr8g0375521 59.091 132 52 2 1 130 51 182 1.32e-55 191
Msa0036560 MtrunA17_Chr1g0200421 35.461 141 79 4 1 129 246 386 7.08e-22 98.2
Msa0036560 MtrunA17_Chr5g0422571 37.584 149 80 6 1 138 109 255 6.49e-21 92.8
Msa0036560 MtrunA17_Chr8g0352011 37.681 138 76 5 1 129 174 310 1.23e-19 90.1
Msa0036560 MtrunA17_Chr7g0258011 35.065 154 80 7 1 136 184 335 1.89e-19 89.4
Msa0036560 MtrunA17_Chr1g0198651 35.915 142 76 5 1 129 110 249 2.60e-19 88.2
Msa0036560 MtrunA17_Chr2g0320341 36.090 133 71 4 8 126 246 378 2.80e-19 89.7
Msa0036560 MtrunA17_Chr3g0123941 35.036 137 81 3 1 129 132 268 3.37e-19 88.6
Msa0036560 MtrunA17_Chr1g0173841 36.691 139 76 6 1 129 223 359 9.15e-19 88.2
Msa0036560 MtrunA17_Chr4g0053341 38.346 133 72 5 6 129 87 218 3.31e-18 83.6
Msa0036560 MtrunA17_Chr2g0328921 35.252 139 78 6 1 129 146 282 6.41e-18 84.3
Msa0036560 MtrunA17_Chr4g0026521 36.296 135 74 6 5 129 130 262 2.49e-17 82.4
Msa0036560 MtrunA17_Chr2g0321291 37.037 135 73 5 5 129 145 277 2.74e-17 82.4
Msa0036560 MtrunA17_Chr8g0382121 33.577 137 80 5 1 126 120 256 2.31e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0036560 AT2G02080.6 49.886 439 175 15 1 428 1 405 7.87e-114 342
Msa0036560 AT2G02080.2 49.886 439 175 15 1 428 1 405 7.87e-114 342
Msa0036560 AT2G02080.1 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0036560 AT2G02080.4 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0036560 AT2G02080.5 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0036560 AT2G02080.3 49.658 439 176 15 1 428 78 482 3.32e-113 343
Msa0036560 AT2G02070.2 84.568 162 19 2 1 162 76 231 2.48e-97 305
Msa0036560 AT2G02070.1 84.568 162 19 2 1 162 76 231 2.48e-97 305
Msa0036560 AT1G14580.1 90.141 142 13 1 1 142 77 217 3.49e-95 295
Msa0036560 AT1G14580.2 90.141 142 13 1 1 142 77 217 3.49e-95 295
Msa0036560 AT1G14580.3 90.141 142 13 1 1 142 91 231 4.49e-95 295
Msa0036560 AT3G50700.1 84.397 141 22 0 1 141 58 198 3.79e-92 287
Msa0036560 AT1G55110.3 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0036560 AT1G55110.1 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0036560 AT1G55110.2 85.616 146 20 1 1 145 87 232 8.22e-92 286
Msa0036560 AT5G66730.1 85.106 141 21 0 1 141 56 196 2.69e-91 286
Msa0036560 AT3G45260.2 68.000 200 55 2 1 191 63 262 6.04e-91 284
Msa0036560 AT3G45260.1 68.000 200 55 2 1 191 63 262 6.04e-91 284
Msa0036560 AT1G03840.2 83.333 138 23 0 1 138 63 200 1.19e-88 280
Msa0036560 AT1G03840.1 83.333 138 23 0 1 138 65 202 1.48e-88 280
Msa0036560 AT5G03150.1 80.128 156 26 2 1 151 77 232 1.10e-87 277
Msa0036560 AT3G13810.3 86.331 139 18 1 1 138 81 219 1.16e-87 277
Msa0036560 AT3G13810.6 86.331 139 18 1 1 138 75 213 1.20e-87 277
Msa0036560 AT3G13810.5 86.331 139 18 1 1 138 89 227 1.27e-87 277
Msa0036560 AT3G13810.4 86.331 139 18 1 1 138 94 232 1.52e-87 277
Msa0036560 AT3G13810.1 86.331 139 18 1 1 138 94 232 1.52e-87 277
Msa0036560 AT3G13810.2 86.331 139 18 1 1 138 95 233 1.75e-87 277
Msa0036560 AT5G44160.2 84.058 138 22 0 1 138 22 159 2.69e-87 274
Msa0036560 AT5G44160.1 84.058 138 22 0 1 138 61 198 3.71e-87 275
Msa0036560 AT5G60470.1 76.667 150 32 2 1 147 59 208 9.83e-86 270
Msa0036560 AT4G02670.2 76.623 154 26 2 1 144 79 232 2.05e-85 268
Msa0036560 AT4G02670.1 76.623 154 26 2 1 144 77 230 2.22e-85 268
Msa0036560 AT5G60470.2 76.667 150 32 2 1 147 68 217 2.83e-85 270
Msa0036560 AT5G60470.3 76.667 150 32 2 1 147 64 213 3.45e-85 269
Msa0036560 AT1G25250.1 44.248 226 98 6 1 222 34 235 2.96e-59 199
Msa0036560 AT1G25250.3 44.248 226 98 6 1 222 57 258 4.52e-59 199
Msa0036560 AT1G68130.1 48.039 204 87 5 1 202 65 251 5.07e-59 200
Msa0036560 AT2G01940.1 62.687 134 48 2 1 132 68 201 1.38e-57 197
Msa0036560 AT2G01940.3 61.481 135 49 3 1 132 68 202 4.93e-54 187
Msa0036560 AT1G68130.2 46.703 182 78 5 23 202 1 165 5.77e-46 163
Msa0036560 AT1G25250.2 42.647 204 89 6 23 222 1 180 6.41e-46 162
Msa0036560 AT2G01940.2 62.500 112 40 2 23 132 1 112 3.76e-44 159
Msa0036560 AT1G34370.3 34.568 162 92 4 1 148 29 190 6.59e-21 93.2
Msa0036560 AT1G34370.2 34.568 162 92 4 1 148 239 400 8.46e-21 95.5
Msa0036560 AT1G34370.1 34.568 162 92 4 1 148 239 400 8.46e-21 95.5
Msa0036560 AT5G22890.1 32.168 143 83 3 1 129 212 354 1.57e-19 90.5
Msa0036560 AT1G13290.1 36.000 150 82 6 1 138 96 243 3.63e-19 88.2
Msa0036560 AT3G20880.1 34.783 138 80 5 1 129 251 387 1.46e-18 88.2
Msa0036560 AT1G51220.1 31.677 161 96 6 1 152 173 328 1.56e-18 87.0
Msa0036560 AT3G57670.1 35.971 139 77 6 1 129 212 348 3.17e-18 86.7
Msa0036560 AT1G08290.1 37.500 136 72 6 5 129 179 312 1.42e-17 84.3
Msa0036560 AT1G34790.1 38.806 134 70 6 6 129 145 276 2.07e-17 83.2

Find 106 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATAAATTTATTAATTTA+AGG 0.118224 1_1:+65164916 Msa0036560:three_prime_UTR
CCAACTTGATGATCACTTAA+AGG 0.176750 1_1:-65164380 None:intergenic
CTAAAAGAAGTGTAGTTTAT+TGG 0.180835 1_1:+65165024 Msa0036560:three_prime_UTR
ATTGCTTTCATTGCCAAATA+TGG 0.188179 1_1:-65164684 None:intergenic
TTTGCAATTGATGGGATATT+TGG 0.199708 1_1:-65163980 None:intergenic
GCACATTCAACTCAACATTT+TGG 0.223217 1_1:+65164863 Msa0036560:CDS
AGCTACTTGCTTGGTGTTCC+AGG 0.228645 1_1:-65161324 None:intergenic
GGACGTGTTAAAATAAAATA+AGG 0.252394 1_1:-65165083 None:intergenic
AACAACATCAATGTCACTTT+TGG 0.258147 1_1:+65164572 Msa0036560:CDS
AATGATGAAGAGTGATTTAA+AGG 0.258726 1_1:-65164101 None:intergenic
GGAAACACATCATCCATATT+TGG 0.261465 1_1:+65164671 Msa0036560:CDS
GATTGCAAAATATATAATTA+TGG 0.270959 1_1:+65161149 Msa0036560:intron
TGCTAGTGGATGATGTAATT+TGG 0.279783 1_1:-65164013 None:intergenic
TGGAAATAGAAGTTCAAGTA+TGG 0.282481 1_1:+65164592 Msa0036560:CDS
CTTTCTCCTTGGCTCTTTGT+TGG 0.310223 1_1:-65162009 None:intergenic
ATTGTAGTAATTTCTAGAAT+TGG 0.317396 1_1:-65165059 None:intergenic
TTAAATCACTCTTCATCATT+TGG 0.318218 1_1:+65164104 Msa0036560:CDS
TTAAGACACCCTAACCCTTT+TGG 0.323474 1_1:+65163912 Msa0036560:CDS
CACGACCCTTCAAGAGCTTT+AGG 0.336517 1_1:+65162065 Msa0036560:CDS
AGCAATCTTAATATGAGATT+TGG 0.345761 1_1:+65164701 Msa0036560:CDS
AATATGTTGCAATGAAGGTT+AGG 0.360874 1_1:+65164893 Msa0036560:exon
TTGCAAGAGGAAAGGATCTA+AGG 0.371590 1_1:-65160870 None:intergenic
GATGACAACAACGATCTTCA+TGG 0.372227 1_1:+65164626 Msa0036560:CDS
CAACTTGATGATCACTTAAA+GGG 0.376548 1_1:-65164379 None:intergenic
AACCATAAGGTTGAAAAGAT+TGG 0.377417 1_1:-65164294 None:intergenic
TTTGTTGCCATTAGAGTCTT+GGG 0.377742 1_1:-65161885 None:intergenic
ATACCTAGCTATTTATCTTC+TGG 0.377801 1_1:-65160811 None:intergenic
GTAGTAGTTGATTGAGGATG+AGG 0.387074 1_1:-65161243 None:intergenic
ACAAACCATCACATTAGTTT+AGG 0.387648 1_1:+65163957 Msa0036560:CDS
ATGATCATAAATCAGCTGAT+AGG 0.388164 1_1:+65164528 Msa0036560:CDS
ATTACTACCTTTGTTATTGT+TGG 0.391654 1_1:-65164504 None:intergenic
TGAGTACTCCCAAAAGGGTT+AGG 0.396876 1_1:-65163921 None:intergenic
CTCACAGATTGAGAGCAAAA+AGG 0.402598 1_1:-65160893 None:intergenic
ATTTGTTGCCATTAGAGTCT+TGG 0.406931 1_1:-65161886 None:intergenic
TTTGTATTGCCTTGAAGATC+AGG 0.407490 1_1:-65164251 None:intergenic
AGTGCTATCACTTCTGCATC+TGG 0.408067 1_1:-65161858 None:intergenic
TTGATAAACTCTATTGCAAA+TGG 0.417216 1_1:+65164650 Msa0036560:CDS
GTGACAGTTTCATCACTCAT+AGG 0.424200 1_1:+65163856 Msa0036560:CDS
TTTGACCATGTTGCATTGAA+TGG 0.424923 1_1:-65164409 None:intergenic
AATATGCTGTTCAATCTGAT+TGG 0.427517 1_1:+65162165 Msa0036560:CDS
ATGCATCTTCCTGATCTTCA+AGG 0.433107 1_1:+65164242 Msa0036560:CDS
GCTCAAATATGTTGCAATGA+AGG 0.444416 1_1:+65164888 Msa0036560:CDS
TTGAGATTGTTGTTCTTCAA+AGG 0.461712 1_1:-65164183 None:intergenic
CACAAATAAACCTTTCTCCT+TGG 0.464750 1_1:-65162020 None:intergenic
TTGTTCCTTGGTTACTACTC+AGG 0.465952 1_1:-65164334 None:intergenic
TATGTGAGGTTTGCAACAAA+GGG 0.467995 1_1:+65161916 Msa0036560:CDS
ACTATCTCCCAAGACTCTAA+TGG 0.473692 1_1:+65161878 Msa0036560:exon
TGATGGACGCATGTGGGCTC+AGG 0.479979 1_1:-65162044 None:intergenic
TGTAGTTTATTGGTAAAATG+AGG 0.480030 1_1:+65165034 Msa0036560:three_prime_UTR
GAAGAGGACACAATCTTCCT+TGG 0.488329 1_1:+65161970 Msa0036560:CDS
AATTGATGAGTACTCCCAAA+AGG 0.490054 1_1:-65163927 None:intergenic
CCTTTAAGTGATCATCAAGT+TGG 0.496965 1_1:+65164380 Msa0036560:CDS
CAACAAAGAGCCAAGGAGAA+AGG 0.497525 1_1:+65162010 Msa0036560:CDS
TAAACTAATGTGATGGTTTG+TGG 0.499948 1_1:-65163955 None:intergenic
TGATCATAAATCAGCTGATA+GGG 0.500020 1_1:+65164529 Msa0036560:CDS
ATTAAGTGTTGTTCAAACTT+TGG 0.503007 1_1:-65164068 None:intergenic
TGAATTGATCATGAACCATA+AGG 0.503794 1_1:-65164307 None:intergenic
ATATGTTGCAATGAAGGTTA+GGG 0.507680 1_1:+65164894 Msa0036560:exon
AATCTTAATATGAGATTTGG+TGG 0.509729 1_1:+65164704 Msa0036560:CDS
CAAAATGTTGTTATTGCTAG+TGG 0.510794 1_1:-65164027 None:intergenic
AAGAGCAAGAGCAAGGAAAA+GGG 0.511623 1_1:-65165104 None:intergenic
GAGTACTCCCAAAAGGGTTA+GGG 0.513767 1_1:-65163920 None:intergenic
TTGAAGAATGGTGATGAAGA+TGG 0.514253 1_1:-65164137 None:intergenic
ATATGTGAGGTTTGCAACAA+AGG 0.517578 1_1:+65161915 Msa0036560:CDS
GACGTGTTAAAATAAAATAA+GGG 0.519515 1_1:-65165082 None:intergenic
CAGTTCCTCAAAAGAAAAGA+AGG 0.521220 1_1:+65161295 Msa0036560:five_prime_UTR
TAATGTAAAGTGTTGTTCCT+TGG 0.521540 1_1:-65164346 None:intergenic
TTTGCAACAAAGGGTTTCAA+AGG 0.521693 1_1:+65161925 Msa0036560:CDS
TTGCAACAAAGGGTTTCAAA+GGG 0.525797 1_1:+65161926 Msa0036560:CDS
ATTGATGAGTACTCCCAAAA+GGG 0.530292 1_1:-65163926 None:intergenic
GCAGAAGTAGTAGTTGATTG+AGG 0.531988 1_1:-65161249 None:intergenic
ATTGTGGCACCCTCTTCTCT+AGG 0.536248 1_1:+65162231 Msa0036560:CDS
ATATCACTCATATTGAAGAA+TGG 0.537313 1_1:-65164149 None:intergenic
AGATCTCCTAAAGCTCTTGA+AGG 0.547138 1_1:-65162071 None:intergenic
ACTTTGGTGGTGTTGATCCA+AGG 0.547369 1_1:-65164052 None:intergenic
GTAAGCATGGTGAGAAGAAG+TGG 0.548240 1_1:+65162120 Msa0036560:CDS
AAAAGTCCAACAAAGAGCCA+AGG 0.555795 1_1:+65162003 Msa0036560:CDS
AATCTTCAACTTCATAGAAG+AGG 0.557392 1_1:+65161954 Msa0036560:CDS
AACAAATAGATTTATATGTG+AGG 0.560724 1_1:+65161902 Msa0036560:CDS
TTTGGCCTAAACTAATGTGA+TGG 0.560847 1_1:-65163962 None:intergenic
TAGCCAGAAGATAAATAGCT+AGG 0.563569 1_1:+65160808 None:intergenic
AAGCATTACTCTCGTAAGCA+TGG 0.570554 1_1:+65162107 Msa0036560:CDS
ATGTTTGTTACCTAGAGAAG+AGG 0.572256 1_1:-65162241 None:intergenic
AAGCTCTTGAAGGGTCGTGA+TGG 0.580721 1_1:-65162061 None:intergenic
TTCTTAAACAAACAACTACA+TGG 0.582618 1_1:+65164215 Msa0036560:CDS
TGACAGTTTCATCACTCATA+GGG 0.582640 1_1:+65163857 Msa0036560:CDS
TGTTTGTTACCTAGAGAAGA+GGG 0.585590 1_1:-65162240 None:intergenic
AGAGAATATAGATGTGATTG+TGG 0.589973 1_1:+65162215 Msa0036560:CDS
AGAGCTTTAGGAGATCTCAC+TGG 0.591272 1_1:+65162077 Msa0036560:CDS
AAGTGTTGTTCAAACTTTGG+TGG 0.596159 1_1:-65164065 None:intergenic
AAGAAAAGAAGGAATCAACC+TGG 0.619630 1_1:+65161306 Msa0036560:five_prime_UTR
ATGGTCAGAAACATGAGTGG+TGG 0.622609 1_1:+65164767 Msa0036560:CDS
TTTGTCCATTCAATGCAACA+TGG 0.623181 1_1:+65164404 Msa0036560:CDS
AAAGCACATTCTAAGACTTG+TGG 0.628477 1_1:+65162188 Msa0036560:CDS
AGGGTCGTGATGGACGCATG+TGG 0.629562 1_1:-65162051 None:intergenic
GATCTCCTAAAGCTCTTGAA+GGG 0.629745 1_1:-65162070 None:intergenic
TGCAAAATATATAATTATGG+CGG 0.632865 1_1:+65161152 Msa0036560:five_prime_UTR
GGGTCGTGATGGACGCATGT+GGG 0.641981 1_1:-65162050 None:intergenic
TGACATGATGAATACTAGCA+TGG 0.643758 1_1:+65164814 Msa0036560:CDS
AATTCTACCAACAATAACAA+AGG 0.649478 1_1:+65164497 Msa0036560:CDS
GATGAAGAGTGATTTAAAGG+TGG 0.652236 1_1:-65164098 None:intergenic
AACAACCTGAGTAGTAACCA+AGG 0.667707 1_1:+65164329 Msa0036560:CDS
AATGCAGTGGCAGACATGTG+AGG 0.674772 1_1:-65164443 None:intergenic
ACAAGAGTAATGAAGAGACG+AGG 0.717918 1_1:-65160845 None:intergenic
GAAGAACAACAATCTCAACA+AGG 0.728667 1_1:+65164188 Msa0036560:CDS
GGAATGGTCAGAAACATGAG+TGG 0.767875 1_1:+65164764 Msa0036560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATATTTGATTTTTTTG+TGG - chr1_1:65160957-65160976 None:intergenic 10.0%
!!! TATATAATATTTTGTTGTTT+TGG + chr1_1:65161814-65161833 Msa0036560:intron 10.0%
!! ATTAAAATGAAAAAAAAAGA+AGG - chr1_1:65163545-65163564 None:intergenic 10.0%
!! GAGATAAATTTATTAATTTA+AGG + chr1_1:65164916-65164935 Msa0036560:three_prime_UTR 10.0%
!! GATTGCAAAATATATAATTA+TGG + chr1_1:65161149-65161168 Msa0036560:intron 15.0%
!!! GATTTTGATAATAAAATTGA+AGG - chr1_1:65161544-65161563 None:intergenic 15.0%
!! CGAATTCTTATAATAAAAAT+TGG - chr1_1:65162444-65162463 None:intergenic 15.0%
!!! TACCTTTTTCATATAATAAA+AGG + chr1_1:65162711-65162730 Msa0036560:intron 15.0%
!! ATATTCATTACACAAAAATA+TGG + chr1_1:65163633-65163652 Msa0036560:intron 15.0%
!! TATTCATTACACAAAAATAT+GGG + chr1_1:65163634-65163653 Msa0036560:intron 15.0%
!!! AAACTCATTTTTAGTAAAAA+TGG + chr1_1:65163748-65163767 Msa0036560:intron 15.0%
!!! TATCATTGACAATTTTTTTT+GGG - chr1_1:65163795-65163814 None:intergenic 15.0%
!!! ATATCATTGACAATTTTTTT+TGG - chr1_1:65163796-65163815 None:intergenic 15.0%
!!! TAATTCTTTGTGATTAATTT+TGG + chr1_1:65163826-65163845 Msa0036560:intron 15.0%
!!! AAATTAACTTTAGATTTTCT+TGG + chr1_1:65164734-65164753 Msa0036560:CDS 15.0%
!! TGCAAAATATATAATTATGG+CGG + chr1_1:65161152-65161171 Msa0036560:five_prime_UTR 20.0%
!! TAATTCATGTTCATGATTTA+GGG - chr1_1:65161459-65161478 None:intergenic 20.0%
!! TAAATCATGAACATGAATTA+GGG + chr1_1:65161459-65161478 Msa0036560:intron 20.0%
!! AACAAATAGATTTATATGTG+AGG + chr1_1:65161902-65161921 Msa0036560:CDS 20.0%
!! TAGCATATATTATATATACG+TGG - chr1_1:65162333-65162352 None:intergenic 20.0%
!! AAAAAAGACAACGATATATA+AGG - chr1_1:65162591-65162610 None:intergenic 20.0%
!!! CACCTTTTATTATATGAAAA+AGG - chr1_1:65162716-65162735 None:intergenic 20.0%
!!! ACAAAATTTGAAATGTTTGA+AGG + chr1_1:65162953-65162972 Msa0036560:intron 20.0%
!!! TGAAGGAAAAAAATCAATTT+TGG + chr1_1:65162970-65162989 Msa0036560:intron 20.0%
!!! AAAAAATCAATTTTGGTTCT+AGG + chr1_1:65162977-65162996 Msa0036560:intron 20.0%
!!! AAAAATCAATTTTGGTTCTA+GGG + chr1_1:65162978-65162997 Msa0036560:intron 20.0%
!! GGTAATTAAATTGAAGAATA+GGG - chr1_1:65163166-65163185 None:intergenic 20.0%
!! TGGTAATTAAATTGAAGAAT+AGG - chr1_1:65163167-65163186 None:intergenic 20.0%
!! AGAAAATTCTCTTCATTAAT+TGG + chr1_1:65163189-65163208 Msa0036560:intron 20.0%
!! ATACTCAAAAACTTCAATAT+GGG - chr1_1:65163331-65163350 None:intergenic 20.0%
!! AATACTCAAAAACTTCAATA+TGG - chr1_1:65163332-65163351 None:intergenic 20.0%
!!! AAGTTTGATTTAGAAATTCT+TGG + chr1_1:65163414-65163433 Msa0036560:intron 20.0%
!!! TCATTTTAATTTGTTACAAG+TGG + chr1_1:65163555-65163574 Msa0036560:intron 20.0%
!! ATTATAATATGAACTTCCAA+AGG + chr1_1:65163657-65163676 Msa0036560:intron 20.0%
!!! TCATTTTTAGTAAAAATGGT+AGG + chr1_1:65163752-65163771 Msa0036560:intron 20.0%
!!! CATTTTTAGTAAAAATGGTA+GGG + chr1_1:65163753-65163772 Msa0036560:intron 20.0%
!!! ATTTTTAGTAAAAATGGTAG+GGG + chr1_1:65163754-65163773 Msa0036560:intron 20.0%
!!! ATTGTAGTAATTTCTAGAAT+TGG - chr1_1:65165062-65165081 None:intergenic 20.0%
!! GACGTGTTAAAATAAAATAA+GGG - chr1_1:65165085-65165104 None:intergenic 20.0%
! ATTAAAAGAAGCTAGAAAGA+AGG - chr1_1:65160985-65161004 None:intergenic 25.0%
!! TTGTTATCTTTTCATGAGAA+AGG + chr1_1:65161050-65161069 Msa0036560:intron 25.0%
!!! TCTTCATCTACATCATTTTT+TGG + chr1_1:65161180-65161199 Msa0036560:five_prime_UTR 25.0%
! AAAAAATTAAGCTACTTGCT+TGG - chr1_1:65161336-65161355 None:intergenic 25.0%
! AAAAACAAAAATTCCGAGAA+GGG - chr1_1:65161397-65161416 None:intergenic 25.0%
! CTAATTCATGTTCATGATTT+AGG - chr1_1:65161460-65161479 None:intergenic 25.0%
! CTAAATCATGAACATGAATT+AGG + chr1_1:65161458-65161477 Msa0036560:intron 25.0%
! AGCTATATAAGAACTATGAT+TGG + chr1_1:65161504-65161523 Msa0036560:intron 25.0%
! GCTATATAAGAACTATGATT+GGG + chr1_1:65161505-65161524 Msa0036560:intron 25.0%
! CTATATAAGAACTATGATTG+GGG + chr1_1:65161506-65161525 Msa0036560:intron 25.0%
!! ATATAAGTAACCCTAACTTT+TGG - chr1_1:65162362-65162381 None:intergenic 25.0%
! TTAGGGTTACTTATATTGTT+TGG + chr1_1:65162366-65162385 Msa0036560:intron 25.0%
! CTCTTTAAACTTCTTTACTA+AGG + chr1_1:65162686-65162705 Msa0036560:intron 25.0%
!!! GCTCTTGTTAACTTTTTTTT+GGG - chr1_1:65162834-65162853 None:intergenic 25.0%
!!! AGCTCTTGTTAACTTTTTTT+TGG - chr1_1:65162835-65162854 None:intergenic 25.0%
! CGTGAATGTTAATAGATTAT+GGG - chr1_1:65163011-65163030 None:intergenic 25.0%
! ACGTGAATGTTAATAGATTA+TGG - chr1_1:65163012-65163031 None:intergenic 25.0%
! AACTTTGTTCTCATATGAAT+TGG + chr1_1:65163050-65163069 Msa0036560:intron 25.0%
!! TAATGAAGAGAATTTTCTGT+TGG - chr1_1:65163187-65163206 None:intergenic 25.0%
! ATATATAGTCATGTTTGTCA+TGG + chr1_1:65163221-65163240 Msa0036560:intron 25.0%
!! TAGAATATAGACAAGTATTG+AGG + chr1_1:65163282-65163301 Msa0036560:intron 25.0%
! TACTCAAAAACTTCAATATG+GGG - chr1_1:65163330-65163349 None:intergenic 25.0%
! TAAATCAAACTTCCAATTTG+AGG - chr1_1:65163406-65163425 None:intergenic 25.0%
!!! TCTTGGTTTGTTTCATATTT+TGG + chr1_1:65163431-65163450 Msa0036560:intron 25.0%
! TAAACTACAATAGAAGTAGA+GGG - chr1_1:65163471-65163490 None:intergenic 25.0%
!! AGAAGGTTAATTGATTTAAG+TGG - chr1_1:65163528-65163547 None:intergenic 25.0%
!!! ATTGACAATTTTTTTTGGGT+GGG - chr1_1:65163791-65163810 None:intergenic 25.0%
!! ATTAAGTGTTGTTCAAACTT+TGG - chr1_1:65164071-65164090 None:intergenic 25.0%
! AATGATGAAGAGTGATTTAA+AGG - chr1_1:65164104-65164123 None:intergenic 25.0%
! TTAAATCACTCTTCATCATT+TGG + chr1_1:65164104-65164123 Msa0036560:CDS 25.0%
! ATATCACTCATATTGAAGAA+TGG - chr1_1:65164152-65164171 None:intergenic 25.0%
! TTCTTAAACAAACAACTACA+TGG + chr1_1:65164215-65164234 Msa0036560:CDS 25.0%
! AATTCTACCAACAATAACAA+AGG + chr1_1:65164497-65164516 Msa0036560:CDS 25.0%
!!! ATTACTACCTTTGTTATTGT+TGG - chr1_1:65164507-65164526 None:intergenic 25.0%
! TTGATAAACTCTATTGCAAA+TGG + chr1_1:65164650-65164669 Msa0036560:CDS 25.0%
! AGCAATCTTAATATGAGATT+TGG + chr1_1:65164701-65164720 Msa0036560:CDS 25.0%
! AATCTTAATATGAGATTTGG+TGG + chr1_1:65164704-65164723 Msa0036560:CDS 25.0%
!! CAATAAACTACACTTCTTTT+AGG - chr1_1:65165026-65165045 None:intergenic 25.0%
!! CTAAAAGAAGTGTAGTTTAT+TGG + chr1_1:65165024-65165043 Msa0036560:three_prime_UTR 25.0%
! TGTAGTTTATTGGTAAAATG+AGG + chr1_1:65165034-65165053 Msa0036560:three_prime_UTR 25.0%
! GGACGTGTTAAAATAAAATA+AGG - chr1_1:65165086-65165105 None:intergenic 25.0%
ATACCTAGCTATTTATCTTC+TGG - chr1_1:65160814-65160833 None:intergenic 30.0%
! TGATTCCTTCTTTTCTTTTG+AGG - chr1_1:65161303-65161322 None:intergenic 30.0%
CAAAAACAAAAATTCCGAGA+AGG - chr1_1:65161398-65161417 None:intergenic 30.0%
!! TTTTAAAAGCCACAAACTCA+TGG - chr1_1:65161638-65161657 None:intergenic 30.0%
!!! TGTTGTTTTGGCATTTTTCA+TGG + chr1_1:65161826-65161845 Msa0036560:intron 30.0%
AATCTTCAACTTCATAGAAG+AGG + chr1_1:65161954-65161973 Msa0036560:CDS 30.0%
AATATGCTGTTCAATCTGAT+TGG + chr1_1:65162165-65162184 Msa0036560:CDS 30.0%
AGAGAATATAGATGTGATTG+TGG + chr1_1:65162215-65162234 Msa0036560:CDS 30.0%
! TGACCATTTTCTTTGCAAAT+CGG - chr1_1:65162513-65162532 None:intergenic 30.0%
AATTAGAGCTGAAAATGAAG+AGG - chr1_1:65162615-65162634 None:intergenic 30.0%
AACACAAACTAACAGAGAAA+GGG - chr1_1:65162862-65162881 None:intergenic 30.0%
AAACACAAACTAACAGAGAA+AGG - chr1_1:65162863-65162882 None:intergenic 30.0%
!! TTTCTCTGTTAGTTTGTGTT+TGG + chr1_1:65162862-65162881 Msa0036560:intron 30.0%
!! TTCTCTGTTAGTTTGTGTTT+GGG + chr1_1:65162863-65162882 Msa0036560:intron 30.0%
! GTTAGAAGGTGTATATTGTA+TGG + chr1_1:65162887-65162906 Msa0036560:intron 30.0%
TGTTCTCATATGAATTGGAA+TGG + chr1_1:65163055-65163074 Msa0036560:intron 30.0%
TGTGATATAACGAATTCTCT+TGG + chr1_1:65163259-65163278 Msa0036560:intron 30.0%
ATCAAAGAAAGACCTCAAAT+TGG + chr1_1:65163391-65163410 Msa0036560:intron 30.0%
!!! ATATTTTGGCATAATCCCAT+GGG + chr1_1:65163445-65163464 Msa0036560:intron 30.0%
GTAAACTACAATAGAAGTAG+AGG - chr1_1:65163472-65163491 None:intergenic 30.0%
ATTAAACCCACCAAATACAA+AGG - chr1_1:65163584-65163603 None:intergenic 30.0%
AAAAGAGTTATGTTCACCTT+TGG - chr1_1:65163676-65163695 None:intergenic 30.0%
!!! AGGTGAACATAACTCTTTTT+TGG + chr1_1:65163677-65163696 Msa0036560:intron 30.0%
!!! CATTGACAATTTTTTTTGGG+TGG - chr1_1:65163792-65163811 None:intergenic 30.0%
!! TTTGTGATTAATTTTGGTGC+AGG + chr1_1:65163832-65163851 Msa0036560:intron 30.0%
TAAACTAATGTGATGGTTTG+TGG - chr1_1:65163958-65163977 None:intergenic 30.0%
! ACAAACCATCACATTAGTTT+AGG + chr1_1:65163957-65163976 Msa0036560:CDS 30.0%
TTTGCAATTGATGGGATATT+TGG - chr1_1:65163983-65164002 None:intergenic 30.0%
! CTGATGATTTTGCAATTGAT+GGG - chr1_1:65163991-65164010 None:intergenic 30.0%
! TCTGATGATTTTGCAATTGA+TGG - chr1_1:65163992-65164011 None:intergenic 30.0%
! CAAAATGTTGTTATTGCTAG+TGG - chr1_1:65164030-65164049 None:intergenic 30.0%
! TTGAGATTGTTGTTCTTCAA+AGG - chr1_1:65164186-65164205 None:intergenic 30.0%
! TTCCAATCTTTTCAACCTTA+TGG + chr1_1:65164292-65164311 Msa0036560:CDS 30.0%
AACCATAAGGTTGAAAAGAT+TGG - chr1_1:65164297-65164316 None:intergenic 30.0%
TGAATTGATCATGAACCATA+AGG - chr1_1:65164310-65164329 None:intergenic 30.0%
!! TAATGTAAAGTGTTGTTCCT+TGG - chr1_1:65164349-65164368 None:intergenic 30.0%
! CAACTTGATGATCACTTAAA+GGG - chr1_1:65164382-65164401 None:intergenic 30.0%
CTTCAAAAAGCTTCTCAAAT+TGG + chr1_1:65164467-65164486 Msa0036560:CDS 30.0%
ATGATCATAAATCAGCTGAT+AGG + chr1_1:65164528-65164547 Msa0036560:CDS 30.0%
TGATCATAAATCAGCTGATA+GGG + chr1_1:65164529-65164548 Msa0036560:CDS 30.0%
!!! AACAACATCAATGTCACTTT+TGG + chr1_1:65164572-65164591 Msa0036560:CDS 30.0%
TGGAAATAGAAGTTCAAGTA+TGG + chr1_1:65164592-65164611 Msa0036560:CDS 30.0%
ATTGCTTTCATTGCCAAATA+TGG - chr1_1:65164687-65164706 None:intergenic 30.0%
!! ACTTTAGATTTTCTTGGTGT+TGG + chr1_1:65164740-65164759 Msa0036560:CDS 30.0%
AATATGTTGCAATGAAGGTT+AGG + chr1_1:65164893-65164912 Msa0036560:exon 30.0%
ATATGTTGCAATGAAGGTTA+GGG + chr1_1:65164894-65164913 Msa0036560:exon 30.0%
!! TCTTTTCTTTTGAGGAACTG+TGG - chr1_1:65161295-65161314 None:intergenic 35.0%
CAGTTCCTCAAAAGAAAAGA+AGG + chr1_1:65161295-65161314 Msa0036560:five_prime_UTR 35.0%
AAGAAAAGAAGGAATCAACC+TGG + chr1_1:65161306-65161325 Msa0036560:five_prime_UTR 35.0%
CTACTATTACCATGAGTTTG+TGG + chr1_1:65161626-65161645 Msa0036560:intron 35.0%
TTTGTTGCCATTAGAGTCTT+GGG - chr1_1:65161888-65161907 None:intergenic 35.0%
! ATTTGTTGCCATTAGAGTCT+TGG - chr1_1:65161889-65161908 None:intergenic 35.0%
ATATGTGAGGTTTGCAACAA+AGG + chr1_1:65161915-65161934 Msa0036560:CDS 35.0%
TATGTGAGGTTTGCAACAAA+GGG + chr1_1:65161916-65161935 Msa0036560:CDS 35.0%
TTTGCAACAAAGGGTTTCAA+AGG + chr1_1:65161925-65161944 Msa0036560:CDS 35.0%
TTGCAACAAAGGGTTTCAAA+GGG + chr1_1:65161926-65161945 Msa0036560:CDS 35.0%
CACAAATAAACCTTTCTCCT+TGG - chr1_1:65162023-65162042 None:intergenic 35.0%
!! AAAGCACATTCTAAGACTTG+TGG + chr1_1:65162188-65162207 Msa0036560:CDS 35.0%
! TGTTTGTTACCTAGAGAAGA+GGG - chr1_1:65162243-65162262 None:intergenic 35.0%
! ATGTTTGTTACCTAGAGAAG+AGG - chr1_1:65162244-65162263 None:intergenic 35.0%
!!! TGCTACTTTTGCCAAAAGTT+AGG + chr1_1:65162348-65162367 Msa0036560:intron 35.0%
!!! GCTACTTTTGCCAAAAGTTA+GGG + chr1_1:65162349-65162368 Msa0036560:intron 35.0%
! CATCCGATTTGCAAAGAAAA+TGG + chr1_1:65162507-65162526 Msa0036560:intron 35.0%
! TTCCATGTTCTTTTCAGCAA+TGG + chr1_1:65163139-65163158 Msa0036560:intron 35.0%
! TCCATGTTCTTTTCAGCAAT+GGG + chr1_1:65163140-65163159 Msa0036560:intron 35.0%
GTTGCTTGCATTTATTGAGT+AGG + chr1_1:65163304-65163323 Msa0036560:intron 35.0%
!!! CATATTTTGGCATAATCCCA+TGG + chr1_1:65163444-65163463 Msa0036560:intron 35.0%
TGACAGTTTCATCACTCATA+GGG + chr1_1:65163857-65163876 Msa0036560:CDS 35.0%
ATTGATGAGTACTCCCAAAA+GGG - chr1_1:65163929-65163948 None:intergenic 35.0%
AATTGATGAGTACTCCCAAA+AGG - chr1_1:65163930-65163949 None:intergenic 35.0%
TTTGGCCTAAACTAATGTGA+TGG - chr1_1:65163965-65163984 None:intergenic 35.0%
! TGCTAGTGGATGATGTAATT+TGG - chr1_1:65164016-65164035 None:intergenic 35.0%
! AATAACAACATTTTGCGCCT+TGG + chr1_1:65164035-65164054 Msa0036560:CDS 35.0%
! AAGTGTTGTTCAAACTTTGG+TGG - chr1_1:65164068-65164087 None:intergenic 35.0%
GATGAAGAGTGATTTAAAGG+TGG - chr1_1:65164101-65164120 None:intergenic 35.0%
! TTGAAGAATGGTGATGAAGA+TGG - chr1_1:65164140-65164159 None:intergenic 35.0%
GAAGAACAACAATCTCAACA+AGG + chr1_1:65164188-65164207 Msa0036560:CDS 35.0%
TTTGTATTGCCTTGAAGATC+AGG - chr1_1:65164254-65164273 None:intergenic 35.0%
! CCAACTTGATGATCACTTAA+AGG - chr1_1:65164383-65164402 None:intergenic 35.0%
CCTTTAAGTGATCATCAAGT+TGG + chr1_1:65164380-65164399 Msa0036560:CDS 35.0%
TTTGTCCATTCAATGCAACA+TGG + chr1_1:65164404-65164423 Msa0036560:CDS 35.0%
TTTGACCATGTTGCATTGAA+TGG - chr1_1:65164412-65164431 None:intergenic 35.0%
GGAAACACATCATCCATATT+TGG + chr1_1:65164671-65164690 Msa0036560:CDS 35.0%
!!! TTAGATTTTCTTGGTGTTGG+AGG + chr1_1:65164743-65164762 Msa0036560:CDS 35.0%
TGACATGATGAATACTAGCA+TGG + chr1_1:65164814-65164833 Msa0036560:CDS 35.0%
!!! GAGTTGAATGTGCTGATTTT+AGG - chr1_1:65164856-65164875 None:intergenic 35.0%
! GCACATTCAACTCAACATTT+TGG + chr1_1:65164863-65164882 Msa0036560:CDS 35.0%
GCTCAAATATGTTGCAATGA+AGG + chr1_1:65164888-65164907 Msa0036560:CDS 35.0%
ACAAGAGTAATGAAGAGACG+AGG - chr1_1:65160848-65160867 None:intergenic 40.0%
TTGCAAGAGGAAAGGATCTA+AGG - chr1_1:65160873-65160892 None:intergenic 40.0%
CAAAAAGGTTGCAAGAGGAA+AGG - chr1_1:65160881-65160900 None:intergenic 40.0%
CTCACAGATTGAGAGCAAAA+AGG - chr1_1:65160896-65160915 None:intergenic 40.0%
GTAGTAGTTGATTGAGGATG+AGG - chr1_1:65161246-65161265 None:intergenic 40.0%
GCAGAAGTAGTAGTTGATTG+AGG - chr1_1:65161252-65161271 None:intergenic 40.0%
!! TTTTGAGGAACTGTGGTTGA+AGG - chr1_1:65161288-65161307 None:intergenic 40.0%
ACTATCTCCCAAGACTCTAA+TGG + chr1_1:65161878-65161897 Msa0036560:exon 40.0%
!! GACTTTTGCTTTAGCTTCCA+AGG - chr1_1:65161990-65162009 None:intergenic 40.0%
AAAAGTCCAACAAAGAGCCA+AGG + chr1_1:65162003-65162022 Msa0036560:CDS 40.0%
GATCTCCTAAAGCTCTTGAA+GGG - chr1_1:65162073-65162092 None:intergenic 40.0%
AGATCTCCTAAAGCTCTTGA+AGG - chr1_1:65162074-65162093 None:intergenic 40.0%
AAGCATTACTCTCGTAAGCA+TGG + chr1_1:65162107-65162126 Msa0036560:CDS 40.0%
GTTTGTGTTTGGGTGTTAGA+AGG + chr1_1:65162873-65162892 Msa0036560:intron 40.0%
ATGAATTGGAATGGAGATGC+TGG + chr1_1:65163064-65163083 Msa0036560:intron 40.0%
TGAATTGGAATGGAGATGCT+GGG + chr1_1:65163065-65163084 Msa0036560:intron 40.0%
CAAGTGGCTACCTTTGTATT+TGG + chr1_1:65163571-65163590 Msa0036560:intron 40.0%
TGGCTACCTTTGTATTTGGT+GGG + chr1_1:65163575-65163594 Msa0036560:intron 40.0%
GTGACAGTTTCATCACTCAT+AGG + chr1_1:65163856-65163875 Msa0036560:CDS 40.0%
! TTAAGACACCCTAACCCTTT+TGG + chr1_1:65163912-65163931 Msa0036560:CDS 40.0%
! TAAGACACCCTAACCCTTTT+GGG + chr1_1:65163913-65163932 Msa0036560:CDS 40.0%
ATGCATCTTCCTGATCTTCA+AGG + chr1_1:65164242-65164261 Msa0036560:CDS 40.0%
AACAACCTGAGTAGTAACCA+AGG + chr1_1:65164329-65164348 Msa0036560:CDS 40.0%
TTGTTCCTTGGTTACTACTC+AGG - chr1_1:65164337-65164356 None:intergenic 40.0%
!!! AGCTTTTTGAAGCAATGCAG+TGG - chr1_1:65164459-65164478 None:intergenic 40.0%
GATGACAACAACGATCTTCA+TGG + chr1_1:65164626-65164645 Msa0036560:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG + chr1_1:65164748-65164767 Msa0036560:CDS 40.0%
GAGAGCAAAAAGGTTGCAAG+AGG - chr1_1:65160886-65160905 None:intergenic 45.0%
AGTGCTATCACTTCTGCATC+TGG - chr1_1:65161861-65161880 None:intergenic 45.0%
GAAGAGGACACAATCTTCCT+TGG + chr1_1:65161970-65161989 Msa0036560:CDS 45.0%
! CTTTCTCCTTGGCTCTTTGT+TGG - chr1_1:65162012-65162031 None:intergenic 45.0%
CAACAAAGAGCCAAGGAGAA+AGG + chr1_1:65162010-65162029 Msa0036560:CDS 45.0%
!! AGAGCTTTAGGAGATCTCAC+TGG + chr1_1:65162077-65162096 Msa0036560:CDS 45.0%
GTAAGCATGGTGAGAAGAAG+TGG + chr1_1:65162120-65162139 Msa0036560:CDS 45.0%
AGGTGTATATTGTATGGCGC+AGG + chr1_1:65162893-65162912 Msa0036560:intron 45.0%
GCCCATTGCTGAAAAGAACA+TGG - chr1_1:65163144-65163163 None:intergenic 45.0%
AATAGAAGTAGAGGGCCCAT+GGG - chr1_1:65163463-65163482 None:intergenic 45.0%
GTGGCTACCTTTGTATTTGG+TGG + chr1_1:65163574-65163593 Msa0036560:intron 45.0%
GAGTACTCCCAAAAGGGTTA+GGG - chr1_1:65163923-65163942 None:intergenic 45.0%
TGAGTACTCCCAAAAGGGTT+AGG - chr1_1:65163924-65163943 None:intergenic 45.0%
!! ACTTTGGTGGTGTTGATCCA+AGG - chr1_1:65164055-65164074 None:intergenic 45.0%
GGAATGGTCAGAAACATGAG+TGG + chr1_1:65164764-65164783 Msa0036560:CDS 45.0%
ATGGTCAGAAACATGAGTGG+TGG + chr1_1:65164767-65164786 Msa0036560:CDS 45.0%
!! TATAATTTATATAATCAATT+AGG + chr1_1:65163604-65163623 Msa0036560:intron 5.0%
!! AGCTACTTGCTTGGTGTTCC+AGG - chr1_1:65161327-65161346 None:intergenic 50.0%
AAGCTCTTGAAGGGTCGTGA+TGG - chr1_1:65162064-65162083 None:intergenic 50.0%
CACGACCCTTCAAGAGCTTT+AGG + chr1_1:65162065-65162084 Msa0036560:CDS 50.0%
ATTGTGGCACCCTCTTCTCT+AGG + chr1_1:65162231-65162250 Msa0036560:CDS 50.0%
CAATAGAAGTAGAGGGCCCA+TGG - chr1_1:65163464-65163483 None:intergenic 50.0%
AATGCAGTGGCAGACATGTG+AGG - chr1_1:65164446-65164465 None:intergenic 50.0%
CCACATGCACACACCCTTCT+CGG + chr1_1:65161381-65161400 Msa0036560:intron 55.0%
! CCGAGAAGGGTGTGTGCATG+TGG - chr1_1:65161384-65161403 None:intergenic 60.0%
! TGATGGACGCATGTGGGCTC+AGG - chr1_1:65162047-65162066 None:intergenic 60.0%
!! GGGTCGTGATGGACGCATGT+GGG - chr1_1:65162053-65162072 None:intergenic 60.0%
!! AGGGTCGTGATGGACGCATG+TGG - chr1_1:65162054-65162073 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 65160811 65165111 65160811 ID=Msa0036560;Name=Msa0036560
chr1_1 mRNA 65160811 65165111 65160811 ID=Msa0036560-mRNA-1;Parent=Msa0036560;Name=Msa0036560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=332|1|1|1|0.33|0.25|4|204|469
chr1_1 exon 65160811 65160910 65160811 ID=Msa0036560-mRNA-1:exon:20964;Parent=Msa0036560-mRNA-1
chr1_1 exon 65161150 65161340 65161150 ID=Msa0036560-mRNA-1:exon:20965;Parent=Msa0036560-mRNA-1
chr1_1 exon 65161856 65162252 65161856 ID=Msa0036560-mRNA-1:exon:20966;Parent=Msa0036560-mRNA-1
chr1_1 exon 65163854 65165111 65163854 ID=Msa0036560-mRNA-1:exon:20967;Parent=Msa0036560-mRNA-1
chr1_1 five_prime_UTR 65160811 65160910 65160811 ID=Msa0036560-mRNA-1:five_prime_utr;Parent=Msa0036560-mRNA-1
chr1_1 five_prime_UTR 65161150 65161340 65161150 ID=Msa0036560-mRNA-1:five_prime_utr;Parent=Msa0036560-mRNA-1
chr1_1 five_prime_UTR 65161856 65161896 65161856 ID=Msa0036560-mRNA-1:five_prime_utr;Parent=Msa0036560-mRNA-1
chr1_1 CDS 65161897 65162252 65161897 ID=Msa0036560-mRNA-1:cds;Parent=Msa0036560-mRNA-1
chr1_1 CDS 65163854 65164907 65163854 ID=Msa0036560-mRNA-1:cds;Parent=Msa0036560-mRNA-1
chr1_1 three_prime_UTR 65164908 65165111 65164908 ID=Msa0036560-mRNA-1:three_prime_utr;Parent=Msa0036560-mRNA-1
Gene Sequence

>Msa0036560

ATGGCAACAAATAGATTTATATGTGAGGTTTGCAACAAAGGGTTTCAAAGGGAGCAAAATCTTCAACTTCATAGAAGAGGACACAATCTTCCTTGGAAGCTAAAGCAAAAGTCCAACAAAGAGCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGCGTCCATCACGACCCTTCAAGAGCTTTAGGAGATCTCACTGGAATTAAAAAGCATTACTCTCGTAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGTACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCTAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACAAGAGAGTGTATTAAGACACCCTAACCCTTTTGGGAGTACTCATCAATTGTATGCCACAAACCATCACATTAGTTTAGGCCAAATATCCCATCAATTGCAAAATCATCAGAACCAAATTACATCATCCACTAGCAATAACAACATTTTGCGCCTTGGATCAACACCACCAAAGTTTGAACAACACTTAATATCATCACCACCTTTAAATCACTCTTCATCATTTGGACACTCAATTCCATCTTCATCACCATTCTTCAATATGAGTGATATTTCAAATCAATCCTTTGAAGAACAACAATCTCAACAAGGACAATTCTTAAACAAACAACTACATGGTCTAATGCATCTTCCTGATCTTCAAGGCAATACAAATACAAACAATTCAAATTCTTCCAATCTTTTCAACCTTATGGTTCATGATCAATTCAACAACCTGAGTAGTAACCAAGGAACAACACTTTACATTAACAACAACAACCCTTTAAGTGATCATCAAGTTGGTTTTGTCCATTCAATGCAACATGGTCAAAACATGTCTAGTCCTCACATGTCTGCCACTGCATTGCTTCAAAAAGCTTCTCAAATTGGTTCAACTAATTCTACCAACAATAACAAAGGTAGTAATAATGATCATAAATCAGCTGATAGGGACTTTGTTGTGTCTGATCACAACAACATCAATGTCACTTTTGGAAATAGAAGTTCAAGTATGGAAAATGATCATGATGACAACAACGATCTTCATGGATTGATAAACTCTATTGCAAATGGAAACACATCATCCATATTTGGCAATGAAAGCAATCTTAATATGAGATTTGGTGGATCTGATAAATTAACTTTAGATTTTCTTGGTGTTGGAGGAATGGTCAGAAACATGAGTGGTGGATTTTCACAAAGTGAACAACAACGTGACATGATGAATACTAGCATGGCTTCTTTGAATCATGACCTAAAATCAGCACATTCAACTCAACATTTTGGAAGCTCAAATATGTTGCAATGA
Protein sequence

>Msa0036560

MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESVLRHPNPFGSTHQLYATNHHISLGQISHQLQNHQNQITSSTSNNNILRLGSTPPKFEQHLISSPPLNHSSSFGHSIPSSSPFFNMSDISNQSFEEQQSQQGQFLNKQLHGLMHLPDLQGNTNTNNSNSSNLFNLMVHDQFNNLSSNQGTTLYINNNNPLSDHQVGFVHSMQHGQNMSSPHMSATALLQKASQIGSTNSTNNNKGSNNDHKSADRDFVVSDHNNINVTFGNRSSSMENDHDDNNDLHGLINSIANGNTSSIFGNESNLNMRFGGSDKLTLDFLGVGGMVRNMSGGFSQSEQQRDMMNTSMASLNHDLKSAHSTQHFGSSNMLQ*