AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0421690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421690 MtrunA17_Chr3g0122261 99.237 131 0 1 1 131 1 130 6.43e-90 256
Msa0421690 MtrunA17_Chr8g0377531 53.957 139 49 5 1 131 82 213 4.58e-41 135
Msa0421690 MtrunA17_Chr5g0434711 88.235 68 8 0 15 82 4 71 7.06e-37 120
Msa0421690 MtrunA17_Chr7g0224931 37.500 128 61 3 1 109 21 148 7.11e-17 72.4
Msa0421690 MtrunA17_Chr7g0224971 37.500 128 61 3 1 109 21 148 7.11e-17 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0421690 AT1G27290.2 56.944 144 47 2 1 131 1 142 6.52e-51 158
Msa0421690 AT1G27290.1 56.944 144 47 2 1 131 1 142 6.52e-51 158

Find 77 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTCTTTGCATTACAAAT+AGG 0.200673 3_2:-70720333 Msa0421690:three_prime_UTR
GGATCGGTCACGTTCTTTAT+TGG 0.225023 3_2:-70721370 Msa0421690:CDS
GAATGGATAAAGTTGAAAAT+TGG 0.229504 3_2:+70721728 None:intergenic
ATAATTGAAATCTTAATATT+AGG 0.243021 3_2:-70720246 Msa0421690:three_prime_UTR
CGTTTCTTGCATCTAATAAA+AGG 0.265274 3_2:+70720406 None:intergenic
TCTGCTTCTGGGAATTTCTA+TGG 0.268697 3_2:-70721407 Msa0421690:CDS
ATATAACAATTTCCACATTA+TGG 0.276917 3_2:-70720440 Msa0421690:three_prime_UTR
CTATGTTTATGTTTATGTTT+AGG 0.298933 3_2:+70721630 None:intergenic
GTGGGTTATTGGATTGATTA+TGG 0.317283 3_2:-70721332 Msa0421690:CDS
ATCTCTTTGCATTACAAATA+GGG 0.322428 3_2:-70720332 Msa0421690:three_prime_UTR
GTAAAACAACAACTTATAAC+AGG 0.335247 3_2:+70720281 None:intergenic
CTTTGATTTCTTTCTCCAAT+TGG 0.347715 3_2:+70720463 None:intergenic
ATTATGGTTCTCTATGTTGC+TGG 0.354926 3_2:-70721316 Msa0421690:CDS
CCGCGTAAAGATTCTATTCC+AGG 0.361280 3_2:-70721223 Msa0421690:intron
AAATTGGGATTGACTGAGTT+TGG 0.366889 3_2:+70721744 None:intergenic
AATGGATAAAGTTGAAAATT+GGG 0.368376 3_2:+70721729 None:intergenic
ATGAGATAAAATAAAGTGTT+GGG 0.371291 3_2:+70721787 None:intergenic
TTCTGTTCTCTGTTATATCA+TGG 0.373629 3_2:-70721263 Msa0421690:CDS
TTCTTCTCATCATCTTGTCT+TGG 0.387442 3_2:+70721590 None:intergenic
AAGAGAAGGAAAATATGATT+TGG 0.392654 3_2:-70720164 Msa0421690:three_prime_UTR
GCAAGAAACGTGGATATATA+TGG 0.396794 3_2:-70720393 Msa0421690:three_prime_UTR
GAAAATATGATTTGGCTCAT+TGG 0.398671 3_2:-70720156 Msa0421690:three_prime_UTR
TCTTTACGCGGCGGTGGCTC+CGG 0.404881 3_2:+70721235 None:intergenic
CGGTTGCTCCGGTGGATGAT+TGG 0.416801 3_2:+70721477 None:intergenic
GTTACCACTCTCTCTGATAT+AGG 0.444657 3_2:-70721289 Msa0421690:CDS
GAGAAATTTAACGGCGTTGG+TGG 0.453775 3_2:+70721499 None:intergenic
CGCCGTAACGGTTGCTCCGG+TGG 0.458989 3_2:+70721469 None:intergenic
AGCAGAGAGGCAAAACCCGC+AGG 0.469362 3_2:+70721424 None:intergenic
GGTTGAGAAGGATTGCAGAT+AGG 0.472984 3_2:+70721533 None:intergenic
AACTTATAACAGGGGAAGGA+GGG 0.477542 3_2:+70720291 None:intergenic
GGATGATTGGAGAAATTTAA+CGG 0.478874 3_2:+70721490 None:intergenic
AAGCTAATGTGAGTACCAAT+TGG 0.492910 3_2:-70720478 Msa0421690:exon
TTGGAGAAATTTAACGGCGT+TGG 0.502757 3_2:+70721496 None:intergenic
ATAGAATCTTTACGCGGCGG+TGG 0.505827 3_2:+70721229 None:intergenic
CTGTTATATCATGGCGGCGC+CGG 0.507370 3_2:-70721254 Msa0421690:CDS
TTGGGATTGACTGAGTTTGG+TGG 0.511014 3_2:+70721747 None:intergenic
AATGAGATAAAATAAAGTGT+TGG 0.511437 3_2:+70721786 None:intergenic
GAGTTTGGTGGAAAGAAGAA+TGG 0.513029 3_2:+70721759 None:intergenic
TTAACGGCGTTGGTGGTGAA+CGG 0.531777 3_2:+70721506 None:intergenic
GGCTCTGATGCTCTGTGGAT+CGG 0.537627 3_2:-70721386 Msa0421690:CDS
CAACTTATAACAGGGGAAGG+AGG 0.539505 3_2:+70720290 None:intergenic
GTGAACGGAGGAGGTTGAGA+AGG 0.548099 3_2:+70721521 None:intergenic
GCGTTGGTGGTGAACGGAGG+AGG 0.549273 3_2:+70721512 None:intergenic
CCACCTCAAATCTCACCTGC+GGG 0.549426 3_2:-70721439 Msa0421690:CDS
ACTTATAACAGGGGAAGGAG+GGG 0.552523 3_2:+70720292 None:intergenic
AAACGCCGTAACGGTTGCTC+CGG 0.554974 3_2:+70721466 None:intergenic
TTGCATCTAATAAAAGGAGA+AGG 0.555126 3_2:+70720412 None:intergenic
AAACCCGCAGGTGAGATTTG+AGG 0.566480 3_2:+70721436 None:intergenic
ATCCACCGGAGCAACCGTTA+CGG 0.568881 3_2:-70721471 Msa0421690:CDS
CTTATAACAGGGGAAGGAGG+GGG 0.570781 3_2:+70720293 None:intergenic
AAATTTCTCCAATCATCCAC+CGG 0.571678 3_2:-70721485 Msa0421690:CDS
GAGAAGGAAGCTCCATAATG+TGG 0.580065 3_2:+70720428 None:intergenic
ATTGGGAGAAACGAGGCGAA+TGG 0.581574 3_2:+70721711 None:intergenic
CAACAACTTATAACAGGGGA+AGG 0.584055 3_2:+70720287 None:intergenic
TGAGATAAAATAAAGTGTTG+GGG 0.593110 3_2:+70721788 None:intergenic
GGTGGAGGTAAACGCCGTAA+CGG 0.594940 3_2:+70721457 None:intergenic
TATCATAAACTATAAAGAGA+AGG 0.595855 3_2:-70720178 Msa0421690:three_prime_UTR
GCAGGTGAGATTTGAGGTGG+AGG 0.603112 3_2:+70721442 None:intergenic
GATAAAATAAAGTGTTGGGG+GGG 0.607293 3_2:+70721791 None:intergenic
CCCGCAGGTGAGATTTGAGG+TGG 0.619368 3_2:+70721439 None:intergenic
TAAAACAACAACTTATAACA+GGG 0.620755 3_2:+70720282 None:intergenic
TTTATTAGATGCAAGAAACG+TGG 0.623065 3_2:-70720403 Msa0421690:three_prime_UTR
GAGATAAAATAAAGTGTTGG+GGG 0.625884 3_2:+70721789 None:intergenic
AGATAAAATAAAGTGTTGGG+GGG 0.628391 3_2:+70721790 None:intergenic
TCTATGGCTCTGATGCTCTG+TGG 0.628501 3_2:-70721391 Msa0421690:CDS
TCCACCTCAAATCTCACCTG+CGG 0.630396 3_2:-70721440 Msa0421690:CDS
ACGACCTATATCAGAGAGAG+TGG 0.640005 3_2:+70721285 None:intergenic
ACGGCGTTGGTGGTGAACGG+AGG 0.653070 3_2:+70721509 None:intergenic
AGGGTTTATTGGGAGAAACG+AGG 0.660421 3_2:+70721704 None:intergenic
ATAATCAATCCAATAACCCA+CGG 0.673735 3_2:+70721334 None:intergenic
TGTTCTCTGTTATATCATGG+CGG 0.675392 3_2:-70721260 Msa0421690:CDS
AAAACAACAACTTATAACAG+GGG 0.691991 3_2:+70720283 None:intergenic
TGATAAGCAGAGCAGCGAGG+TGG 0.699742 3_2:+70721830 None:intergenic
AGAAATTCCCAGAAGCAGAG+AGG 0.703569 3_2:+70721411 None:intergenic
CCTGGAATAGAATCTTTACG+CGG 0.704020 3_2:+70721223 None:intergenic
GGAATAGAATCTTTACGCGG+CGG 0.733807 3_2:+70721226 None:intergenic
GAATGATAAGCAGAGCAGCG+AGG 0.754887 3_2:+70721827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGATAACAAAAATTTAAA+CGG - chr3_2:70720778-70720797 Msa0421690:intron 10.0%
!! ATAATTGAAATCTTAATATT+AGG - chr3_2:70721732-70721751 Msa0421690:five_prime_UTR 10.0%
!! TAAGATAACAAAAATTTAAA+CGG - chr3_2:70720778-70720797 Msa0421690:intron 10.0%
!! ATAATTGAAATCTTAATATT+AGG - chr3_2:70721732-70721751 Msa0421690:five_prime_UTR 10.0%
!! TCTATATACATAATGTATTA+AGG + chr3_2:70721274-70721293 None:intergenic 15.0%
!! TCTATATACATAATGTATTA+AGG + chr3_2:70721274-70721293 None:intergenic 15.0%
!!! ATGAGATAAAATAAAGTGTT+GGG + chr3_2:70720194-70720213 None:intergenic 20.0%
!! AATGAGATAAAATAAAGTGT+TGG + chr3_2:70720195-70720214 None:intergenic 20.0%
!! AATGGATAAAGTTGAAAATT+GGG + chr3_2:70720252-70720271 None:intergenic 20.0%
!! AAAAAGATTAAGGGTTTATT+GGG + chr3_2:70720287-70720306 None:intergenic 20.0%
!! AAGAAGAAGAAAAAGATTAA+GGG + chr3_2:70720296-70720315 None:intergenic 20.0%
!! CTATGTTTATGTTTATGTTT+AGG + chr3_2:70720351-70720370 None:intergenic 20.0%
!!! TAAATTTTTGTTATCTTACC+TGG + chr3_2:70720776-70720795 None:intergenic 20.0%
!!! TTTCAAATTTTCCAAAGAAA+TGG - chr3_2:70721015-70721034 Msa0421690:intron 20.0%
!!! TTCAAATTTTCCAAAGAAAT+GGG - chr3_2:70721016-70721035 Msa0421690:intron 20.0%
!! TAGTAATGAACTAAATGTTT+AGG - chr3_2:70721208-70721227 Msa0421690:intron 20.0%
!! AATGCATACATATATCTTAA+TGG + chr3_2:70721235-70721254 None:intergenic 20.0%
!!! TACATAATGTATTAAGGTTT+TGG + chr3_2:70721268-70721287 None:intergenic 20.0%
!! ATATAACAATTTCCACATTA+TGG - chr3_2:70721538-70721557 Msa0421690:CDS 20.0%
!!! ATCAAAGTTACTAAATTTTG+TGG - chr3_2:70721616-70721635 Msa0421690:five_prime_UTR 20.0%
!! TAAAACAACAACTTATAACA+GGG + chr3_2:70721699-70721718 None:intergenic 20.0%
!!! TATGTTTTAAACTGAACAAA+AGG + chr3_2:70721770-70721789 None:intergenic 20.0%
!! TATCATAAACTATAAAGAGA+AGG - chr3_2:70721800-70721819 Msa0421690:five_prime_UTR 20.0%
!!! ATGAGATAAAATAAAGTGTT+GGG + chr3_2:70720194-70720213 None:intergenic 20.0%
!! AATGAGATAAAATAAAGTGT+TGG + chr3_2:70720195-70720214 None:intergenic 20.0%
!! AATGGATAAAGTTGAAAATT+GGG + chr3_2:70720252-70720271 None:intergenic 20.0%
!! AAAAAGATTAAGGGTTTATT+GGG + chr3_2:70720287-70720306 None:intergenic 20.0%
!! AAGAAGAAGAAAAAGATTAA+GGG + chr3_2:70720296-70720315 None:intergenic 20.0%
!! CTATGTTTATGTTTATGTTT+AGG + chr3_2:70720351-70720370 None:intergenic 20.0%
!!! TAAATTTTTGTTATCTTACC+TGG + chr3_2:70720776-70720795 None:intergenic 20.0%
!!! TTTCAAATTTTCCAAAGAAA+TGG - chr3_2:70721015-70721034 Msa0421690:intron 20.0%
!!! TTCAAATTTTCCAAAGAAAT+GGG - chr3_2:70721016-70721035 Msa0421690:intron 20.0%
!! TAGTAATGAACTAAATGTTT+AGG - chr3_2:70721208-70721227 Msa0421690:intron 20.0%
!! AATGCATACATATATCTTAA+TGG + chr3_2:70721235-70721254 None:intergenic 20.0%
!!! TACATAATGTATTAAGGTTT+TGG + chr3_2:70721268-70721287 None:intergenic 20.0%
!! ATATAACAATTTCCACATTA+TGG - chr3_2:70721538-70721557 Msa0421690:CDS 20.0%
!!! ATCAAAGTTACTAAATTTTG+TGG - chr3_2:70721616-70721635 Msa0421690:five_prime_UTR 20.0%
!! TAAAACAACAACTTATAACA+GGG + chr3_2:70721699-70721718 None:intergenic 20.0%
!!! TATGTTTTAAACTGAACAAA+AGG + chr3_2:70721770-70721789 None:intergenic 20.0%
!! TATCATAAACTATAAAGAGA+AGG - chr3_2:70721800-70721819 Msa0421690:five_prime_UTR 20.0%
!!! TGAGATAAAATAAAGTGTTG+GGG + chr3_2:70720193-70720212 None:intergenic 25.0%
! GAATGGATAAAGTTGAAAAT+TGG + chr3_2:70720253-70720272 None:intergenic 25.0%
! GAAAAAGATTAAGGGTTTAT+TGG + chr3_2:70720288-70720307 None:intergenic 25.0%
! GAAGAAGAAGAAAAAGATTA+AGG + chr3_2:70720297-70720316 None:intergenic 25.0%
!!! TTTGTCTTTTGTTTCGTATT+TGG - chr3_2:70720833-70720852 Msa0421690:intron 25.0%
! AAACAAGTATGAGACAAAAA+AGG + chr3_2:70720868-70720887 None:intergenic 25.0%
! GTTGTTCAATGATTTAACAA+AGG - chr3_2:70720888-70720907 Msa0421690:intron 25.0%
!! TTTTCTTTCTTTTTCTGTGT+TGG - chr3_2:70720967-70720986 Msa0421690:intron 25.0%
!! TTTCTTTCTTTTTCTGTGTT+GGG - chr3_2:70720968-70720987 Msa0421690:intron 25.0%
! ACTACTCAAAATTTGATGTT+TGG - chr3_2:70721373-70721392 Msa0421690:CDS 25.0%
!!! CTAGGACAACATTTTTTTAA+GGG + chr3_2:70721409-70721428 None:intergenic 25.0%
! AATCTCTTTGCATTACAAAT+AGG - chr3_2:70721645-70721664 Msa0421690:five_prime_UTR 25.0%
! ATCTCTTTGCATTACAAATA+GGG - chr3_2:70721646-70721665 Msa0421690:five_prime_UTR 25.0%
! AAAACAACAACTTATAACAG+GGG + chr3_2:70721698-70721717 None:intergenic 25.0%
! GTAAAACAACAACTTATAAC+AGG + chr3_2:70721700-70721719 None:intergenic 25.0%
! AAGAGAAGGAAAATATGATT+TGG - chr3_2:70721814-70721833 Msa0421690:five_prime_UTR 25.0%
!!! TGAGATAAAATAAAGTGTTG+GGG + chr3_2:70720193-70720212 None:intergenic 25.0%
! GAATGGATAAAGTTGAAAAT+TGG + chr3_2:70720253-70720272 None:intergenic 25.0%
! GAAAAAGATTAAGGGTTTAT+TGG + chr3_2:70720288-70720307 None:intergenic 25.0%
! GAAGAAGAAGAAAAAGATTA+AGG + chr3_2:70720297-70720316 None:intergenic 25.0%
!!! TTTGTCTTTTGTTTCGTATT+TGG - chr3_2:70720833-70720852 Msa0421690:intron 25.0%
! AAACAAGTATGAGACAAAAA+AGG + chr3_2:70720868-70720887 None:intergenic 25.0%
! GTTGTTCAATGATTTAACAA+AGG - chr3_2:70720888-70720907 Msa0421690:intron 25.0%
!! TTTTCTTTCTTTTTCTGTGT+TGG - chr3_2:70720967-70720986 Msa0421690:intron 25.0%
!! TTTCTTTCTTTTTCTGTGTT+GGG - chr3_2:70720968-70720987 Msa0421690:intron 25.0%
! ACTACTCAAAATTTGATGTT+TGG - chr3_2:70721373-70721392 Msa0421690:CDS 25.0%
!!! CTAGGACAACATTTTTTTAA+GGG + chr3_2:70721409-70721428 None:intergenic 25.0%
! AATCTCTTTGCATTACAAAT+AGG - chr3_2:70721645-70721664 Msa0421690:five_prime_UTR 25.0%
! ATCTCTTTGCATTACAAATA+GGG - chr3_2:70721646-70721665 Msa0421690:five_prime_UTR 25.0%
! AAAACAACAACTTATAACAG+GGG + chr3_2:70721698-70721717 None:intergenic 25.0%
! GTAAAACAACAACTTATAAC+AGG + chr3_2:70721700-70721719 None:intergenic 25.0%
! AAGAGAAGGAAAATATGATT+TGG - chr3_2:70721814-70721833 Msa0421690:five_prime_UTR 25.0%
!! AGATAAAATAAAGTGTTGGG+GGG + chr3_2:70720191-70720210 None:intergenic 30.0%
!! GAGATAAAATAAAGTGTTGG+GGG + chr3_2:70720192-70720211 None:intergenic 30.0%
GGATGATTGGAGAAATTTAA+CGG + chr3_2:70720491-70720510 None:intergenic 30.0%
ATAATCAATCCAATAACCCA+CGG + chr3_2:70720647-70720666 None:intergenic 30.0%
TTCTGTTCTCTGTTATATCA+TGG - chr3_2:70720715-70720734 Msa0421690:intron 30.0%
! GGATGCAAATTGATATGTTT+TGG - chr3_2:70721037-70721056 Msa0421690:intron 30.0%
AGCGAAAATCGAACATATTT+GGG + chr3_2:70721070-70721089 None:intergenic 30.0%
TGGTTTGATCATAAAAGACA+AGG - chr3_2:70721163-70721182 Msa0421690:intron 30.0%
!!! GCTAGGACAACATTTTTTTA+AGG + chr3_2:70721410-70721429 None:intergenic 30.0%
TTAAGCCACACATGATAAAA+GGG + chr3_2:70721452-70721471 None:intergenic 30.0%
ATTAAGCCACACATGATAAA+AGG + chr3_2:70721453-70721472 None:intergenic 30.0%
! CTTTGATTTCTTTCTCCAAT+TGG + chr3_2:70721518-70721537 None:intergenic 30.0%
TTGCATCTAATAAAAGGAGA+AGG + chr3_2:70721569-70721588 None:intergenic 30.0%
CGTTTCTTGCATCTAATAAA+AGG + chr3_2:70721575-70721594 None:intergenic 30.0%
TTTATTAGATGCAAGAAACG+TGG - chr3_2:70721575-70721594 Msa0421690:CDS 30.0%
! GAAAATATGATTTGGCTCAT+TGG - chr3_2:70721822-70721841 Msa0421690:five_prime_UTR 30.0%
!! AGATAAAATAAAGTGTTGGG+GGG + chr3_2:70720191-70720210 None:intergenic 30.0%
!! GAGATAAAATAAAGTGTTGG+GGG + chr3_2:70720192-70720211 None:intergenic 30.0%
GGATGATTGGAGAAATTTAA+CGG + chr3_2:70720491-70720510 None:intergenic 30.0%
ATAATCAATCCAATAACCCA+CGG + chr3_2:70720647-70720666 None:intergenic 30.0%
TTCTGTTCTCTGTTATATCA+TGG - chr3_2:70720715-70720734 Msa0421690:intron 30.0%
! GGATGCAAATTGATATGTTT+TGG - chr3_2:70721037-70721056 Msa0421690:intron 30.0%
AGCGAAAATCGAACATATTT+GGG + chr3_2:70721070-70721089 None:intergenic 30.0%
TGGTTTGATCATAAAAGACA+AGG - chr3_2:70721163-70721182 Msa0421690:intron 30.0%
!!! GCTAGGACAACATTTTTTTA+AGG + chr3_2:70721410-70721429 None:intergenic 30.0%
TTAAGCCACACATGATAAAA+GGG + chr3_2:70721452-70721471 None:intergenic 30.0%
ATTAAGCCACACATGATAAA+AGG + chr3_2:70721453-70721472 None:intergenic 30.0%
! CTTTGATTTCTTTCTCCAAT+TGG + chr3_2:70721518-70721537 None:intergenic 30.0%
TTGCATCTAATAAAAGGAGA+AGG + chr3_2:70721569-70721588 None:intergenic 30.0%
CGTTTCTTGCATCTAATAAA+AGG + chr3_2:70721575-70721594 None:intergenic 30.0%
TTTATTAGATGCAAGAAACG+TGG - chr3_2:70721575-70721594 Msa0421690:CDS 30.0%
! GAAAATATGATTTGGCTCAT+TGG - chr3_2:70721822-70721841 Msa0421690:five_prime_UTR 30.0%
!! GATAAAATAAAGTGTTGGGG+GGG + chr3_2:70720190-70720209 None:intergenic 35.0%
AAATTGGGATTGACTGAGTT+TGG + chr3_2:70720237-70720256 None:intergenic 35.0%
TTCTTCTCATCATCTTGTCT+TGG + chr3_2:70720391-70720410 None:intergenic 35.0%
AAATTTCTCCAATCATCCAC+CGG - chr3_2:70720493-70720512 Msa0421690:intron 35.0%
! GTGGGTTATTGGATTGATTA+TGG - chr3_2:70720646-70720665 Msa0421690:intron 35.0%
ATTATGGTTCTCTATGTTGC+TGG - chr3_2:70720662-70720681 Msa0421690:intron 35.0%
TGTTCTCTGTTATATCATGG+CGG - chr3_2:70720718-70720737 Msa0421690:intron 35.0%
! TTTCTTTTTCTGTGTTGGGT+TGG - chr3_2:70720972-70720991 Msa0421690:intron 35.0%
CAATTTGCATCCCATTTCTT+TGG + chr3_2:70721029-70721048 None:intergenic 35.0%
GCGAAAATCGAACATATTTG+GGG + chr3_2:70721069-70721088 None:intergenic 35.0%
CAGCGAAAATCGAACATATT+TGG + chr3_2:70721071-70721090 None:intergenic 35.0%
! TATGTTCGATTTTCGCTGAT+TGG - chr3_2:70721073-70721092 Msa0421690:intron 35.0%
!! ATGTTCGATTTTCGCTGATT+GGG - chr3_2:70721074-70721093 Msa0421690:intron 35.0%
!! GGTCTTGTTTCTTCATCAAA+TGG - chr3_2:70721095-70721114 Msa0421690:intron 35.0%
TCTTCATCAAATGGAACCTA+CGG - chr3_2:70721104-70721123 Msa0421690:intron 35.0%
GTGCAATAGGCAAAATTTGT+TGG - chr3_2:70721143-70721162 Msa0421690:intron 35.0%
AAGGTGTATGTGAATTTCGT+GGG - chr3_2:70721182-70721201 Msa0421690:intron 35.0%
!!! AGCTGCTTTGCTTTTTAAGA+AGG + chr3_2:70721350-70721369 None:intergenic 35.0%
AAAAAATGTTGTCCTAGCTG+CGG - chr3_2:70721412-70721431 Msa0421690:CDS 35.0%
TAAGCCACACATGATAAAAG+GGG + chr3_2:70721451-70721470 None:intergenic 35.0%
AAGCTAATGTGAGTACCAAT+TGG - chr3_2:70721500-70721519 Msa0421690:CDS 35.0%
GCAAGAAACGTGGATATATA+TGG - chr3_2:70721585-70721604 Msa0421690:exon 35.0%
!! GATAAAATAAAGTGTTGGGG+GGG + chr3_2:70720190-70720209 None:intergenic 35.0%
AAATTGGGATTGACTGAGTT+TGG + chr3_2:70720237-70720256 None:intergenic 35.0%
TTCTTCTCATCATCTTGTCT+TGG + chr3_2:70720391-70720410 None:intergenic 35.0%
AAATTTCTCCAATCATCCAC+CGG - chr3_2:70720493-70720512 Msa0421690:intron 35.0%
! GTGGGTTATTGGATTGATTA+TGG - chr3_2:70720646-70720665 Msa0421690:intron 35.0%
ATTATGGTTCTCTATGTTGC+TGG - chr3_2:70720662-70720681 Msa0421690:intron 35.0%
TGTTCTCTGTTATATCATGG+CGG - chr3_2:70720718-70720737 Msa0421690:intron 35.0%
! TTTCTTTTTCTGTGTTGGGT+TGG - chr3_2:70720972-70720991 Msa0421690:intron 35.0%
CAATTTGCATCCCATTTCTT+TGG + chr3_2:70721029-70721048 None:intergenic 35.0%
GCGAAAATCGAACATATTTG+GGG + chr3_2:70721069-70721088 None:intergenic 35.0%
CAGCGAAAATCGAACATATT+TGG + chr3_2:70721071-70721090 None:intergenic 35.0%
! TATGTTCGATTTTCGCTGAT+TGG - chr3_2:70721073-70721092 Msa0421690:intron 35.0%
!! ATGTTCGATTTTCGCTGATT+GGG - chr3_2:70721074-70721093 Msa0421690:intron 35.0%
!! GGTCTTGTTTCTTCATCAAA+TGG - chr3_2:70721095-70721114 Msa0421690:intron 35.0%
TCTTCATCAAATGGAACCTA+CGG - chr3_2:70721104-70721123 Msa0421690:intron 35.0%
GTGCAATAGGCAAAATTTGT+TGG - chr3_2:70721143-70721162 Msa0421690:intron 35.0%
AAGGTGTATGTGAATTTCGT+GGG - chr3_2:70721182-70721201 Msa0421690:intron 35.0%
!!! AGCTGCTTTGCTTTTTAAGA+AGG + chr3_2:70721350-70721369 None:intergenic 35.0%
AAAAAATGTTGTCCTAGCTG+CGG - chr3_2:70721412-70721431 Msa0421690:CDS 35.0%
TAAGCCACACATGATAAAAG+GGG + chr3_2:70721451-70721470 None:intergenic 35.0%
AAGCTAATGTGAGTACCAAT+TGG - chr3_2:70721500-70721519 Msa0421690:CDS 35.0%
GCAAGAAACGTGGATATATA+TGG - chr3_2:70721585-70721604 Msa0421690:exon 35.0%
! GAGTTTGGTGGAAAGAAGAA+TGG + chr3_2:70720222-70720241 None:intergenic 40.0%
TTGGAGAAATTTAACGGCGT+TGG + chr3_2:70720485-70720504 None:intergenic 40.0%
! TCTGCTTCTGGGAATTTCTA+TGG - chr3_2:70720571-70720590 Msa0421690:intron 40.0%
!!! TTGGATTTGTTTTGATGCCG+TGG - chr3_2:70720627-70720646 Msa0421690:intron 40.0%
!!! TGGATTTGTTTTGATGCCGT+GGG - chr3_2:70720628-70720647 Msa0421690:intron 40.0%
GTTACCACTCTCTCTGATAT+AGG - chr3_2:70720689-70720708 Msa0421690:intron 40.0%
CCTGGAATAGAATCTTTACG+CGG + chr3_2:70720758-70720777 None:intergenic 40.0%
CAAGGTGTATGTGAATTTCG+TGG - chr3_2:70721181-70721200 Msa0421690:intron 40.0%
AGGTGTATGTGAATTTCGTG+GGG - chr3_2:70721183-70721202 Msa0421690:intron 40.0%
! GCTTTTTGTTGCGTTGCATT+AGG - chr3_2:70721311-70721330 Msa0421690:CDS 40.0%
AACTTATAACAGGGGAAGGA+GGG + chr3_2:70721690-70721709 None:intergenic 40.0%
CAACAACTTATAACAGGGGA+AGG + chr3_2:70721694-70721713 None:intergenic 40.0%
! GAGTTTGGTGGAAAGAAGAA+TGG + chr3_2:70720222-70720241 None:intergenic 40.0%
TTGGAGAAATTTAACGGCGT+TGG + chr3_2:70720485-70720504 None:intergenic 40.0%
! TCTGCTTCTGGGAATTTCTA+TGG - chr3_2:70720571-70720590 Msa0421690:intron 40.0%
!!! TTGGATTTGTTTTGATGCCG+TGG - chr3_2:70720627-70720646 Msa0421690:intron 40.0%
!!! TGGATTTGTTTTGATGCCGT+GGG - chr3_2:70720628-70720647 Msa0421690:intron 40.0%
GTTACCACTCTCTCTGATAT+AGG - chr3_2:70720689-70720708 Msa0421690:intron 40.0%
CCTGGAATAGAATCTTTACG+CGG + chr3_2:70720758-70720777 None:intergenic 40.0%
CAAGGTGTATGTGAATTTCG+TGG - chr3_2:70721181-70721200 Msa0421690:intron 40.0%
AGGTGTATGTGAATTTCGTG+GGG - chr3_2:70721183-70721202 Msa0421690:intron 40.0%
! GCTTTTTGTTGCGTTGCATT+AGG - chr3_2:70721311-70721330 Msa0421690:CDS 40.0%
AACTTATAACAGGGGAAGGA+GGG + chr3_2:70721690-70721709 None:intergenic 40.0%
CAACAACTTATAACAGGGGA+AGG + chr3_2:70721694-70721713 None:intergenic 40.0%
TTGGGATTGACTGAGTTTGG+TGG + chr3_2:70720234-70720253 None:intergenic 45.0%
AGGGTTTATTGGGAGAAACG+AGG + chr3_2:70720277-70720296 None:intergenic 45.0%
GGTTGAGAAGGATTGCAGAT+AGG + chr3_2:70720448-70720467 None:intergenic 45.0%
! GAGAAATTTAACGGCGTTGG+TGG + chr3_2:70720482-70720501 None:intergenic 45.0%
AGAAATTCCCAGAAGCAGAG+AGG + chr3_2:70720570-70720589 None:intergenic 45.0%
GGATCGGTCACGTTCTTTAT+TGG - chr3_2:70720608-70720627 Msa0421690:intron 45.0%
!! GTTTTGATGCCGTGGGTTAT+TGG - chr3_2:70720635-70720654 Msa0421690:intron 45.0%
ACGACCTATATCAGAGAGAG+TGG + chr3_2:70720696-70720715 None:intergenic 45.0%
GGAATAGAATCTTTACGCGG+CGG + chr3_2:70720755-70720774 None:intergenic 45.0%
CCGCGTAAAGATTCTATTCC+AGG - chr3_2:70720755-70720774 Msa0421690:intron 45.0%
!! TTGGGTTGGTGAGAGAACAT+AGG - chr3_2:70720986-70721005 Msa0421690:intron 45.0%
!! TGGGTTGGTGAGAGAACATA+GGG - chr3_2:70720987-70721006 Msa0421690:intron 45.0%
TGGTGAGAGAACATAGGGAA+AGG - chr3_2:70720992-70721011 Msa0421690:intron 45.0%
CTCTAATTCAGCGAAACCGT+AGG + chr3_2:70721123-70721142 None:intergenic 45.0%
CTACGGTTTCGCTGAATTAG+AGG - chr3_2:70721121-70721140 Msa0421690:intron 45.0%
! CGCTGAATTAGAGGTGCAAT+AGG - chr3_2:70721130-70721149 Msa0421690:intron 45.0%
CCACACATGATAAAAGGGGT+GGG + chr3_2:70721447-70721466 None:intergenic 45.0%
! AAATTTGTGTTGCTGCAGCG+TGG - chr3_2:70721477-70721496 Msa0421690:CDS 45.0%
GAGAAGGAAGCTCCATAATG+TGG + chr3_2:70721553-70721572 None:intergenic 45.0%
ACTTATAACAGGGGAAGGAG+GGG + chr3_2:70721689-70721708 None:intergenic 45.0%
CAACTTATAACAGGGGAAGG+AGG + chr3_2:70721691-70721710 None:intergenic 45.0%
TTGGGATTGACTGAGTTTGG+TGG + chr3_2:70720234-70720253 None:intergenic 45.0%
AGGGTTTATTGGGAGAAACG+AGG + chr3_2:70720277-70720296 None:intergenic 45.0%
GGTTGAGAAGGATTGCAGAT+AGG + chr3_2:70720448-70720467 None:intergenic 45.0%
! GAGAAATTTAACGGCGTTGG+TGG + chr3_2:70720482-70720501 None:intergenic 45.0%
AGAAATTCCCAGAAGCAGAG+AGG + chr3_2:70720570-70720589 None:intergenic 45.0%
GGATCGGTCACGTTCTTTAT+TGG - chr3_2:70720608-70720627 Msa0421690:intron 45.0%
!! GTTTTGATGCCGTGGGTTAT+TGG - chr3_2:70720635-70720654 Msa0421690:intron 45.0%
ACGACCTATATCAGAGAGAG+TGG + chr3_2:70720696-70720715 None:intergenic 45.0%
GGAATAGAATCTTTACGCGG+CGG + chr3_2:70720755-70720774 None:intergenic 45.0%
CCGCGTAAAGATTCTATTCC+AGG - chr3_2:70720755-70720774 Msa0421690:intron 45.0%
!! TTGGGTTGGTGAGAGAACAT+AGG - chr3_2:70720986-70721005 Msa0421690:intron 45.0%
!! TGGGTTGGTGAGAGAACATA+GGG - chr3_2:70720987-70721006 Msa0421690:intron 45.0%
TGGTGAGAGAACATAGGGAA+AGG - chr3_2:70720992-70721011 Msa0421690:intron 45.0%
CTCTAATTCAGCGAAACCGT+AGG + chr3_2:70721123-70721142 None:intergenic 45.0%
CTACGGTTTCGCTGAATTAG+AGG - chr3_2:70721121-70721140 Msa0421690:intron 45.0%
! CGCTGAATTAGAGGTGCAAT+AGG - chr3_2:70721130-70721149 Msa0421690:intron 45.0%
CCACACATGATAAAAGGGGT+GGG + chr3_2:70721447-70721466 None:intergenic 45.0%
! AAATTTGTGTTGCTGCAGCG+TGG - chr3_2:70721477-70721496 Msa0421690:CDS 45.0%
GAGAAGGAAGCTCCATAATG+TGG + chr3_2:70721553-70721572 None:intergenic 45.0%
ACTTATAACAGGGGAAGGAG+GGG + chr3_2:70721689-70721708 None:intergenic 45.0%
CAACTTATAACAGGGGAAGG+AGG + chr3_2:70721691-70721710 None:intergenic 45.0%
GAATGATAAGCAGAGCAGCG+AGG + chr3_2:70720154-70720173 None:intergenic 50.0%
ATTGGGAGAAACGAGGCGAA+TGG + chr3_2:70720270-70720289 None:intergenic 50.0%
!! TTAACGGCGTTGGTGGTGAA+CGG + chr3_2:70720475-70720494 None:intergenic 50.0%
TCCACCTCAAATCTCACCTG+CGG - chr3_2:70720538-70720557 Msa0421690:intron 50.0%
AAACCCGCAGGTGAGATTTG+AGG + chr3_2:70720545-70720564 None:intergenic 50.0%
! GGTTTTGCCTCTCTGCTTCT+GGG - chr3_2:70720560-70720579 Msa0421690:intron 50.0%
!! TCTATGGCTCTGATGCTCTG+TGG - chr3_2:70720587-70720606 Msa0421690:intron 50.0%
ATAGAATCTTTACGCGGCGG+TGG + chr3_2:70720752-70720771 None:intergenic 50.0%
GATAAAAGGGGTGGGCAAGA+GGG + chr3_2:70721439-70721458 None:intergenic 50.0%
TGATAAAAGGGGTGGGCAAG+AGG + chr3_2:70721440-70721459 None:intergenic 50.0%
! CCCACCCCTTTTATCATGTG+TGG - chr3_2:70721444-70721463 Msa0421690:CDS 50.0%
GCCACACATGATAAAAGGGG+TGG + chr3_2:70721448-70721467 None:intergenic 50.0%
CTTATAACAGGGGAAGGAGG+GGG + chr3_2:70721688-70721707 None:intergenic 50.0%
GAATGATAAGCAGAGCAGCG+AGG + chr3_2:70720154-70720173 None:intergenic 50.0%
ATTGGGAGAAACGAGGCGAA+TGG + chr3_2:70720270-70720289 None:intergenic 50.0%
!! TTAACGGCGTTGGTGGTGAA+CGG + chr3_2:70720475-70720494 None:intergenic 50.0%
TCCACCTCAAATCTCACCTG+CGG - chr3_2:70720538-70720557 Msa0421690:intron 50.0%
AAACCCGCAGGTGAGATTTG+AGG + chr3_2:70720545-70720564 None:intergenic 50.0%
! GGTTTTGCCTCTCTGCTTCT+GGG - chr3_2:70720560-70720579 Msa0421690:intron 50.0%
!! TCTATGGCTCTGATGCTCTG+TGG - chr3_2:70720587-70720606 Msa0421690:intron 50.0%
ATAGAATCTTTACGCGGCGG+TGG + chr3_2:70720752-70720771 None:intergenic 50.0%
GATAAAAGGGGTGGGCAAGA+GGG + chr3_2:70721439-70721458 None:intergenic 50.0%
TGATAAAAGGGGTGGGCAAG+AGG + chr3_2:70721440-70721459 None:intergenic 50.0%
! CCCACCCCTTTTATCATGTG+TGG - chr3_2:70721444-70721463 Msa0421690:CDS 50.0%
GCCACACATGATAAAAGGGG+TGG + chr3_2:70721448-70721467 None:intergenic 50.0%
CTTATAACAGGGGAAGGAGG+GGG + chr3_2:70721688-70721707 None:intergenic 50.0%
GTGAACGGAGGAGGTTGAGA+AGG + chr3_2:70720460-70720479 None:intergenic 55.0%
ATCCACCGGAGCAACCGTTA+CGG - chr3_2:70720507-70720526 Msa0421690:intron 55.0%
AAACGCCGTAACGGTTGCTC+CGG + chr3_2:70720515-70720534 None:intergenic 55.0%
GGTGGAGGTAAACGCCGTAA+CGG + chr3_2:70720524-70720543 None:intergenic 55.0%
! GCAGGTGAGATTTGAGGTGG+AGG + chr3_2:70720539-70720558 None:intergenic 55.0%
CCACCTCAAATCTCACCTGC+GGG - chr3_2:70720539-70720558 Msa0421690:intron 55.0%
! GGGTTTTGCCTCTCTGCTTC+TGG - chr3_2:70720559-70720578 Msa0421690:intron 55.0%
! GGCTCTGATGCTCTGTGGAT+CGG - chr3_2:70720592-70720611 Msa0421690:intron 55.0%
CTGTTATATCATGGCGGCGC+CGG - chr3_2:70720724-70720743 Msa0421690:intron 55.0%
GTGAACGGAGGAGGTTGAGA+AGG + chr3_2:70720460-70720479 None:intergenic 55.0%
ATCCACCGGAGCAACCGTTA+CGG - chr3_2:70720507-70720526 Msa0421690:intron 55.0%
AAACGCCGTAACGGTTGCTC+CGG + chr3_2:70720515-70720534 None:intergenic 55.0%
GGTGGAGGTAAACGCCGTAA+CGG + chr3_2:70720524-70720543 None:intergenic 55.0%
! GCAGGTGAGATTTGAGGTGG+AGG + chr3_2:70720539-70720558 None:intergenic 55.0%
CCACCTCAAATCTCACCTGC+GGG - chr3_2:70720539-70720558 Msa0421690:intron 55.0%
! GGGTTTTGCCTCTCTGCTTC+TGG - chr3_2:70720559-70720578 Msa0421690:intron 55.0%
! GGCTCTGATGCTCTGTGGAT+CGG - chr3_2:70720592-70720611 Msa0421690:intron 55.0%
CTGTTATATCATGGCGGCGC+CGG - chr3_2:70720724-70720743 Msa0421690:intron 55.0%
CGGTTGCTCCGGTGGATGAT+TGG + chr3_2:70720504-70720523 None:intergenic 60.0%
CCCGCAGGTGAGATTTGAGG+TGG + chr3_2:70720542-70720561 None:intergenic 60.0%
AGCAGAGAGGCAAAACCCGC+AGG + chr3_2:70720557-70720576 None:intergenic 60.0%
CGGTTGCTCCGGTGGATGAT+TGG + chr3_2:70720504-70720523 None:intergenic 60.0%
CCCGCAGGTGAGATTTGAGG+TGG + chr3_2:70720542-70720561 None:intergenic 60.0%
AGCAGAGAGGCAAAACCCGC+AGG + chr3_2:70720557-70720576 None:intergenic 60.0%
!! GCGTTGGTGGTGAACGGAGG+AGG + chr3_2:70720469-70720488 None:intergenic 65.0%
!! ACGGCGTTGGTGGTGAACGG+AGG + chr3_2:70720472-70720491 None:intergenic 65.0%
TCTTTACGCGGCGGTGGCTC+CGG + chr3_2:70720746-70720765 None:intergenic 65.0%
!! GCGTTGGTGGTGAACGGAGG+AGG + chr3_2:70720469-70720488 None:intergenic 65.0%
!! ACGGCGTTGGTGGTGAACGG+AGG + chr3_2:70720472-70720491 None:intergenic 65.0%
TCTTTACGCGGCGGTGGCTC+CGG + chr3_2:70720746-70720765 None:intergenic 65.0%
CGCCGTAACGGTTGCTCCGG+TGG + chr3_2:70720512-70720531 None:intergenic 70.0%
GGGCAAGAGGGACCGCAGCT+AGG + chr3_2:70721427-70721446 None:intergenic 70.0%
CGCCGTAACGGTTGCTCCGG+TGG + chr3_2:70720512-70720531 None:intergenic 70.0%
GGGCAAGAGGGACCGCAGCT+AGG + chr3_2:70721427-70721446 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 70720151 70721849 70720151 ID=Msa0421690;Name=Msa0421690
chr3_2 mRNA 70720151 70721849 70720151 ID=Msa0421690-mRNA-1;Parent=Msa0421690;Name=Msa0421690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=247|1|1|1|1|1|2|338|131
chr3_2 exon 70720151 70720505 70720151 ID=Msa0421690-mRNA-1:exon:17086;Parent=Msa0421690-mRNA-1
chr3_2 exon 70721224 70721849 70721224 ID=Msa0421690-mRNA-1:exon:17085;Parent=Msa0421690-mRNA-1
chr3_2 five_prime_UTR 70721603 70721849 70721603 ID=Msa0421690-mRNA-1:five_prime_utr;Parent=Msa0421690-mRNA-1
chr3_2 CDS 70721224 70721602 70721224 ID=Msa0421690-mRNA-1:cds;Parent=Msa0421690-mRNA-1
chr3_2 CDS 70720489 70720505 70720489 ID=Msa0421690-mRNA-1:cds;Parent=Msa0421690-mRNA-1
chr3_2 three_prime_UTR 70720151 70720488 70720151 ID=Msa0421690-mRNA-1:three_prime_utr;Parent=Msa0421690-mRNA-1
Gene Sequence

>Msa0421690

ATGATGAGAAGAACACGTGAAGATGAACAATCACGAGCTTTCTACGACCTATCTGCAATCCTTCTCAACCTCCTCCGTTCACCACCAACGCCGTTAAATTTCTCCAATCATCCACCGGAGCAACCGTTACGGCGTTTACCTCCACCTCAAATCTCACCTGCGGGTTTTGCCTCTCTGCTTCTGGGAATTTCTATGGCTCTGATGCTCTGTGGATCGGTCACGTTCTTTATTGGATTTGTTTTGATGCCGTGGGTTATTGGATTGATTATGGTTCTCTATGTTGCTGGAATTGTTACCACTCTCTCTGATATAGGTCGTTCTGTTCTCTGTTATATCATGGCGGCGCCGGAGCCACCGCCGCGTAAAGATTCTATTCCAGCGTGGAAGCTAATGTGA

Protein sequence

>Msa0421690

MMRRTREDEQSRAFYDLSAILLNLLRSPPTPLNFSNHPPEQPLRRLPPPQISPAGFASLLLGISMALMLCGSVTFFIGFVLMPWVIGLIMVLYVAGIVTTLSDIGRSVLCYIMAAPEPPPRKDSIPAWKLM*