Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144420 | XP_003588819.1 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 6.25e-126 | 361 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144420 | sp|Q6P011|EMC4_DANRE | 35.088 | 171 | 95 | 4 | 14 | 175 | 24 | 187 | 4.60e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144420 | G7I7L8 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.99e-126 | 361 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa0144420 | 0.807431 | 5.073036e-50 | -8.615850e-47 |
| Msa0020390 | Msa0144420 | 0.808702 | 2.719769e-50 | -8.615850e-47 |
| Msa0030300 | Msa0144420 | 0.806817 | 6.843248e-50 | -8.615850e-47 |
| Msa0033880 | Msa0144420 | 0.827710 | 1.346306e-54 | -8.615850e-47 |
| Msa0036540 | Msa0144420 | 0.818858 | 1.574270e-52 | -8.615850e-47 |
| Msa0068020 | Msa0144420 | 0.804799 | 1.816268e-49 | -8.615850e-47 |
| Msa0077900 | Msa0144420 | 0.842567 | 2.390050e-58 | -8.615850e-47 |
| Msa0081940 | Msa0144420 | 0.806109 | 9.649200e-50 | -8.615850e-47 |
| Msa0093010 | Msa0144420 | 0.821539 | 3.826445e-53 | -8.615850e-47 |
| Msa0113240 | Msa0144420 | 0.815332 | 9.761497e-52 | -8.615850e-47 |
| Msa0125790 | Msa0144420 | 0.822084 | 2.861541e-53 | -8.615850e-47 |
| Msa0126840 | Msa0144420 | 0.823653 | 1.233633e-53 | -8.615850e-47 |
| Msa0126880 | Msa0144420 | 0.818839 | 1.589905e-52 | -8.615850e-47 |
| Msa0127850 | Msa0144420 | 0.829456 | 5.096180e-55 | -8.615850e-47 |
| Msa0142410 | Msa0144420 | 0.804752 | 1.857428e-49 | -8.615850e-47 |
| Msa0144420 | Msa0144430 | 0.974454 | 3.484084e-138 | -8.615850e-47 |
| Msa0144420 | Msa0146080 | 0.810390 | 1.180694e-50 | -8.615850e-47 |
| Msa0144420 | Msa0146420 | 0.818301 | 2.105406e-52 | -8.615850e-47 |
| Msa0144420 | Msa0149440 | 0.821838 | 3.263103e-53 | -8.615850e-47 |
| Msa0144420 | Msa0171940 | 0.820934 | 5.274567e-53 | -8.615850e-47 |
| Msa0144420 | Msa0174000 | 0.826701 | 2.348125e-54 | -8.615850e-47 |
| Msa0144420 | Msa0183870 | 0.801360 | 9.341522e-49 | -8.615850e-47 |
| Msa0144420 | Msa0216850 | -0.805412 | 1.351976e-49 | -8.615850e-47 |
| Msa0144420 | Msa0233370 | 0.812067 | 5.107804e-51 | -8.615850e-47 |
| Msa0144420 | Msa0244970 | 0.811839 | 5.728418e-51 | -8.615850e-47 |
| Msa0144420 | Msa0244980 | 0.819868 | 9.265677e-53 | -8.615850e-47 |
| Msa0144420 | Msa0245430 | 0.830666 | 2.582253e-55 | -8.615850e-47 |
| Msa0144420 | Msa0245580 | 0.821737 | 3.443046e-53 | -8.615850e-47 |
| Msa0144420 | Msa0257490 | 0.801332 | 9.467173e-49 | -8.615850e-47 |
| Msa0144420 | Msa0269470 | 0.833884 | 4.125883e-56 | -8.615850e-47 |
| Msa0144420 | Msa0283420 | 0.817726 | 2.839755e-52 | -8.615850e-47 |
| Msa0144420 | Msa0296920 | 0.841617 | 4.262055e-58 | -8.615850e-47 |
| Msa0144420 | Msa0311720 | 0.807203 | 5.668311e-50 | -8.615850e-47 |
| Msa0144420 | Msa0382310 | 0.821096 | 4.842474e-53 | -8.615850e-47 |
| Msa0144420 | Msa0385500 | 0.808810 | 2.578892e-50 | -8.615850e-47 |
| Msa0144420 | Msa0427580 | 0.805213 | 1.487736e-49 | -8.615850e-47 |
| Msa0144420 | Msa0431210 | 0.809701 | 1.661094e-50 | -8.615850e-47 |
| Msa0144420 | Msa0518170 | 0.803779 | 2.962366e-49 | -8.615850e-47 |
| Msa0144420 | Msa0520270 | 0.815216 | 1.035786e-51 | -8.615850e-47 |
| Msa0144420 | Msa0544540 | 0.803604 | 3.220861e-49 | -8.615850e-47 |
| Msa0144420 | Msa0547990 | 0.804245 | 2.369266e-49 | -8.615850e-47 |
| Msa0144420 | Msa0581110 | 0.802445 | 5.591530e-49 | -8.615850e-47 |
| Msa0144420 | Msa0593700 | 0.804169 | 2.458138e-49 | -8.615850e-47 |
| Msa0144420 | Msa0605510 | 0.804234 | 2.382176e-49 | -8.615850e-47 |
| Msa0144420 | Msa0633570 | 0.808580 | 2.888574e-50 | -8.615850e-47 |
| Msa0144420 | Msa0642970 | 0.802235 | 6.177960e-49 | -8.615850e-47 |
| Msa0144420 | Msa0646470 | 0.814569 | 1.441057e-51 | -8.615850e-47 |
| Msa0144420 | Msa0662630 | 0.814100 | 1.829738e-51 | -8.615850e-47 |
| Msa0144420 | Msa0689440 | 0.823645 | 1.239089e-53 | -8.615850e-47 |
| Msa0144420 | Msa0693210 | 0.805328 | 1.407735e-49 | -8.615850e-47 |
| Msa0144420 | Msa0701100 | 0.806836 | 6.777313e-50 | -8.615850e-47 |
| Msa0144420 | Msa0705390 | 0.805397 | 1.361873e-49 | -8.615850e-47 |
| Msa0144420 | Msa0800370 | 0.825149 | 5.487811e-54 | -8.615850e-47 |
| Msa0144420 | Msa0838370 | 0.810127 | 1.345153e-50 | -8.615850e-47 |
| Msa0144420 | Msa0858440 | 0.804859 | 1.764745e-49 | -8.615850e-47 |
| Msa0144420 | Msa0913240 | 0.800775 | 1.230328e-48 | -8.615850e-47 |
| Msa0144420 | Msa1039810 | 0.845126 | 4.931204e-59 | -8.615850e-47 |
| Msa0144420 | Msa1039900 | 0.806198 | 9.241005e-50 | -8.615850e-47 |
| Msa0144420 | Msa1043630 | 0.846612 | 1.946659e-59 | -8.615850e-47 |
| Msa0144420 | Msa1074110 | 0.827840 | 1.252604e-54 | -8.615850e-47 |
| Msa0144420 | Msa1109780 | -0.813210 | 2.872143e-51 | -8.615850e-47 |
| Msa0144420 | Msa1123350 | 0.824706 | 6.980333e-54 | -8.615850e-47 |
| Msa0144420 | Msa1126830 | 0.803727 | 3.036403e-49 | -8.615850e-47 |
| Msa0144420 | Msa1128270 | 0.828908 | 6.920310e-55 | -8.615850e-47 |
| Msa0144420 | Msa1128280 | 0.831905 | 1.280584e-55 | -8.615850e-47 |
| Msa0144420 | Msa1131090 | 0.831227 | 1.880763e-55 | -8.615850e-47 |
| Msa0144420 | Msa1165270 | 0.849065 | 4.106685e-60 | -8.615850e-47 |
| Msa0144420 | Msa1165780 | 0.836394 | 9.600386e-57 | -8.615850e-47 |
| Msa0144420 | Msa1183140 | 0.819091 | 1.392923e-52 | -8.615850e-47 |
| Msa0144420 | Msa1206650 | 0.854875 | 9.197101e-62 | -8.615850e-47 |
| Msa0144420 | Msa1233850 | 0.807330 | 5.328837e-50 | -8.615850e-47 |
| Msa0144420 | Msa1276970 | 0.819888 | 9.164863e-53 | -8.615850e-47 |
| Msa0144420 | Msa1298100 | 0.864886 | 8.806000e-65 | -8.615850e-47 |
| Msa0144420 | Msa1304810 | 0.805262 | 1.453356e-49 | -8.615850e-47 |
| Msa0144420 | Msa1307160 | 0.810876 | 9.266582e-51 | -8.615850e-47 |
| Msa0144420 | Msa1307180 | 0.833159 | 6.259772e-56 | -8.615850e-47 |
| Msa0144420 | Msa1309760 | 0.809275 | 2.051196e-50 | -8.615850e-47 |
| Msa0144420 | Msa1316360 | 0.827213 | 1.770794e-54 | -8.615850e-47 |
| Msa0144420 | Msa1336560 | 0.825817 | 3.812052e-54 | -8.615850e-47 |
| Msa0144420 | Msa1351540 | 0.815057 | 1.123555e-51 | -8.615850e-47 |
| Msa0144420 | Msa1356610 | 0.805992 | 1.021383e-49 | -8.615850e-47 |
| Msa0144420 | Msa1374170 | 0.863162 | 3.031707e-64 | -8.615850e-47 |
| Msa0144420 | Msa1382020 | 0.824585 | 7.454818e-54 | -8.615850e-47 |
| Msa0144420 | Msa1382670 | 0.861823 | 7.826305e-64 | -8.615850e-47 |
| Msa0144420 | Msa1391480 | 0.801618 | 8.269999e-49 | -8.615850e-47 |
| Msa0144420 | Msa1395730 | 0.811412 | 7.091396e-51 | -8.615850e-47 |
| Msa0144420 | Msa1412110 | 0.803672 | 3.117893e-49 | -8.615850e-47 |
| Msa0144420 | Msa1447890 | 0.832021 | 1.198485e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144420 | MtrunA17_Chr8g0347021 | 99.160 | 119 | 1 | 0 | 60 | 178 | 28 | 146 | 2.74e-83 | 242 |
| Msa0144420 | MtrunA17_Chr8g0347341 | 100.000 | 118 | 0 | 0 | 61 | 178 | 179 | 296 | 8.40e-81 | 241 |
| Msa0144420 | MtrunA17_Chr8g0347341 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 5.38e-34 | 121 |
| Msa0144420 | MtrunA17_Chr1g0150351 | 90.984 | 122 | 0 | 1 | 1 | 111 | 1 | 122 | 1.25e-74 | 220 |
| Msa0144420 | MtrunA17_Chr8g0347031 | 93.651 | 63 | 4 | 0 | 1 | 63 | 1 | 63 | 1.67e-36 | 121 |
| Msa0144420 | MtrunA17_Chr8g0347041 | 92.063 | 63 | 5 | 0 | 1 | 63 | 1 | 63 | 1.70e-34 | 121 |
| Msa0144420 | MtrunA17_Chr8g0347041 | 92.157 | 51 | 0 | 1 | 61 | 111 | 179 | 225 | 7.24e-24 | 94.0 |
| Msa0144420 | MtrunA17_Chr1g0150341 | 98.182 | 55 | 1 | 0 | 112 | 166 | 7 | 61 | 4.80e-33 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0144420 | AT5G10780.1 | 81.768 | 181 | 29 | 2 | 1 | 178 | 1 | 180 | 3.52e-88 | 256 |
| Msa0144420 | AT5G10780.2 | 82.840 | 169 | 25 | 2 | 1 | 166 | 1 | 168 | 8.18e-82 | 240 |
Find 93 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTCTTGGAGGAATTTA+AGG | 0.091841 | 1_4:-3913524 | Msa0144420:three_prime_UTR |
| GGTATTCATCGCCCTTAATT+TGG | 0.174653 | 1_4:-3914749 | Msa0144420:CDS |
| TCTTCAGCGATTCAATTAAA+TGG | 0.185762 | 1_4:-3916423 | Msa0144420:exon |
| AACACTCTGTAAGGCACTTA+TGG | 0.194375 | 1_4:+3915689 | None:intergenic |
| TACTGCAAATCTGATGTAAA+AGG | 0.202542 | 1_4:-3913281 | Msa0144420:three_prime_UTR |
| ATCATTAACAAGTTCTTAAA+TGG | 0.219625 | 1_4:+3915789 | None:intergenic |
| GTAACATGCCTCCCAAATTA+AGG | 0.244098 | 1_4:+3914737 | None:intergenic |
| CTTGGAGGAATTTAAGGATT+TGG | 0.280619 | 1_4:-3913518 | Msa0144420:three_prime_UTR |
| CTTCACAATGGGAAGGTTAC+AGG | 0.295260 | 1_4:+3913146 | None:intergenic |
| TGAAGCAGGTATACAAAATA+TGG | 0.299528 | 1_4:-3913128 | Msa0144420:three_prime_UTR |
| TGGATTCAGCATCTTTCTTT+TGG | 0.301710 | 1_4:+3916261 | None:intergenic |
| CTGAAAGAACAATAAGAATT+CGG | 0.312632 | 1_4:+3913201 | None:intergenic |
| TCTTCTGCAGCTCAATTCAT+TGG | 0.332546 | 1_4:-3914339 | Msa0144420:intron |
| CTTTGTATCTCTTTGTATGT+AGG | 0.333936 | 1_4:-3913343 | Msa0144420:three_prime_UTR |
| GTATCACCTTCTCAGCTCTT+TGG | 0.334333 | 1_4:-3915716 | Msa0144420:CDS |
| AAGGGTGTGATGGGATCTTC+TGG | 0.346236 | 1_4:-3916392 | Msa0144420:CDS |
| GTATTCATCGCCCTTAATTT+GGG | 0.348550 | 1_4:-3914748 | Msa0144420:CDS |
| TACAAACCATGTCTAATCTT+TGG | 0.367592 | 1_4:+3913405 | None:intergenic |
| CTCTTTCATTCATTCATAGT+TGG | 0.368002 | 1_4:-3916507 | Msa0144420:five_prime_UTR |
| GATGCTAAAGTGGAGCTTCT+TGG | 0.369452 | 1_4:-3914781 | Msa0144420:CDS |
| AATAGCATACTAGAAATGTT+AGG | 0.385259 | 1_4:-3913257 | Msa0144420:three_prime_UTR |
| ATTTAAGAACTTGTTAATGA+TGG | 0.394212 | 1_4:-3915787 | Msa0144420:CDS |
| ATCGCGAGAAGTTGAATTAT+CGG | 0.394794 | 1_4:+3916346 | None:intergenic |
| GAGGGAAGCGCGTGAGAAAC+CGG | 0.398618 | 1_4:+3916310 | None:intergenic |
| AATTTGGGAGGCATGTTACT+AGG | 0.402445 | 1_4:-3914733 | Msa0144420:CDS |
| GAGGCATGTTACTAGGTGTT+TGG | 0.405795 | 1_4:-3914726 | Msa0144420:CDS |
| CGATTCAATTAAATGGATAA+AGG | 0.406344 | 1_4:-3916416 | Msa0144420:exon |
| ATGCTAAAGTGGAGCTTCTT+GGG | 0.409851 | 1_4:-3914780 | Msa0144420:CDS |
| TCCACTTTAGCATCTTTGTA+AGG | 0.413449 | 1_4:+3914790 | None:intergenic |
| TGAAAGAACAATAAGAATTC+GGG | 0.413709 | 1_4:+3913202 | None:intergenic |
| CTTCTGCAGCTCAATTCATT+GGG | 0.415950 | 1_4:-3914338 | Msa0144420:intron |
| TGGTCACAAATGATCTCATT+AGG | 0.422294 | 1_4:-3913476 | Msa0144420:three_prime_UTR |
| AAGAATGAGTGAAGAGAAGA+AGG | 0.424461 | 1_4:+3916442 | None:intergenic |
| ATTGTTGGAAACAGAAAGCT+TGG | 0.427332 | 1_4:-3915827 | Msa0144420:intron |
| ACACTCTGTAAGGCACTTAT+GGG | 0.435288 | 1_4:+3915690 | None:intergenic |
| TTTAAGAACTTGTTAATGAT+GGG | 0.445845 | 1_4:-3915786 | Msa0144420:CDS |
| AGAAAGATGCTGAATCCAAT+TGG | 0.446637 | 1_4:-3916256 | Msa0144420:CDS |
| TAACCTTCCCATTGTGAAGC+AGG | 0.447117 | 1_4:-3913142 | Msa0144420:three_prime_UTR |
| ATAGCATACTAGAAATGTTA+GGG | 0.456027 | 1_4:-3913256 | Msa0144420:three_prime_UTR |
| TAACATGCCTCCCAAATTAA+GGG | 0.464691 | 1_4:+3914738 | None:intergenic |
| GGGTTTATGATGTGGATGGC+TGG | 0.475763 | 1_4:-3915765 | Msa0144420:CDS |
| AACATAGACATTTAAAAGAA+AGG | 0.477427 | 1_4:+3913175 | None:intergenic |
| TTGTATACCTGCTTCACAAT+GGG | 0.483638 | 1_4:+3913135 | None:intergenic |
| TTCCTACCCACACATCAGAC+TGG | 0.494006 | 1_4:-3914310 | Msa0144420:CDS |
| TGGGATCTTCTGGACGAAGA+TGG | 0.499581 | 1_4:-3916382 | Msa0144420:CDS |
| TGAATCCAATTGGAAATCTC+AGG | 0.499594 | 1_4:-3916246 | Msa0144420:intron |
| AAAGAAAATCCAACCTGAGC+AGG | 0.500189 | 1_4:+3914272 | None:intergenic |
| TCTTTGGTGACTGCAAGTAT+TGG | 0.501455 | 1_4:+3913421 | None:intergenic |
| CAGGAGGTGGAGTACTCAGG+TGG | 0.509179 | 1_4:-3913589 | Msa0144420:CDS |
| GTCATCCTTAGCACCTGCTC+AGG | 0.516236 | 1_4:-3914285 | Msa0144420:intron |
| GTACTGTTAGCATGTTGTAA+TGG | 0.518335 | 1_4:-3913496 | Msa0144420:three_prime_UTR |
| GATAAAGGAAAGGGTGTGAT+GGG | 0.521901 | 1_4:-3916401 | Msa0144420:CDS |
| CTTCAGGAGGTGGAGTACTC+AGG | 0.524189 | 1_4:-3913592 | Msa0144420:intron |
| GAGGTGGAGTACTCAGGTGG+GGG | 0.524742 | 1_4:-3913586 | Msa0144420:CDS |
| GGATAAAGGAAAGGGTGTGA+TGG | 0.525644 | 1_4:-3916402 | Msa0144420:CDS |
| GGAGCTTCTTGGGCCTAAGT+TGG | 0.528352 | 1_4:-3914770 | Msa0144420:CDS |
| CGCGATATTATCGATCCTCC+CGG | 0.529746 | 1_4:-3916329 | Msa0144420:CDS |
| ACCTTACAAAGATGCTAAAG+TGG | 0.529869 | 1_4:-3914791 | Msa0144420:CDS |
| GGGATCTTCTGGACGAAGAT+GGG | 0.531311 | 1_4:-3916381 | Msa0144420:CDS |
| ACTGTTCACTTGTTTAGCAT+CGG | 0.532087 | 1_4:-3915738 | Msa0144420:CDS |
| GCATACCTGAGATTTCCAAT+TGG | 0.533753 | 1_4:+3916241 | None:intergenic |
| AGGAGGTGGAGTACTCAGGT+GGG | 0.535718 | 1_4:-3913588 | Msa0144420:CDS |
| AATTAAATGGATAAAGGAAA+GGG | 0.536006 | 1_4:-3916410 | Msa0144420:exon |
| CATGTTACTAGGTGTTTGGA+AGG | 0.537062 | 1_4:-3914722 | Msa0144420:intron |
| GAAAGCTTGGGAAGTTGCAC+AGG | 0.537408 | 1_4:-3915814 | Msa0144420:CDS |
| TCCAACCTGAGCAGGTGCTA+AGG | 0.537452 | 1_4:+3914280 | None:intergenic |
| CAGTCACCAAAGATTAGACA+TGG | 0.538585 | 1_4:-3913411 | Msa0144420:three_prime_UTR |
| CTTAAGAACTGGAGCATCAA+CGG | 0.547901 | 1_4:+3913554 | None:intergenic |
| GGAGGTGGAGTACTCAGGTG+GGG | 0.550312 | 1_4:-3913587 | Msa0144420:CDS |
| TCCTACCCACACATCAGACT+GGG | 0.552562 | 1_4:-3914309 | Msa0144420:CDS |
| CAATTAAATGGATAAAGGAA+AGG | 0.554170 | 1_4:-3916411 | Msa0144420:exon |
| AGGGCGATGAATACCAACTT+AGG | 0.558217 | 1_4:+3914757 | None:intergenic |
| AGGGAAGCGCGTGAGAAACC+GGG | 0.558868 | 1_4:+3916311 | None:intergenic |
| TTGTTGGAAACAGAAAGCTT+GGG | 0.565750 | 1_4:-3915826 | Msa0144420:intron |
| TTAAGAACTTGTTAATGATG+GGG | 0.568371 | 1_4:-3915785 | Msa0144420:CDS |
| TTTGTATACCTGCTTCACAA+TGG | 0.573399 | 1_4:+3913134 | None:intergenic |
| TTCATCGCCCTTAATTTGGG+AGG | 0.578157 | 1_4:-3914745 | Msa0144420:CDS |
| GGGTTGCCAAAGAGCTGAGA+AGG | 0.582231 | 1_4:+3915710 | None:intergenic |
| GGTAGAATCGTCTTGATCGA+GGG | 0.585755 | 1_4:+3916292 | None:intergenic |
| AGAATGAGTGAAGAGAAGAA+GGG | 0.591696 | 1_4:+3916443 | None:intergenic |
| TAATGATGGGGTTTATGATG+TGG | 0.592983 | 1_4:-3915773 | Msa0144420:CDS |
| ATAAGTGCCTTACAGAGTGT+TGG | 0.594768 | 1_4:-3915687 | Msa0144420:CDS |
| GGGTAGAATCGTCTTGATCG+AGG | 0.613210 | 1_4:+3916291 | None:intergenic |
| TGAATTATCGGAGAAATCAA+CGG | 0.616548 | 1_4:+3916358 | None:intergenic |
| ATACCTGCTTCACAATGGGA+AGG | 0.628040 | 1_4:+3913139 | None:intergenic |
| ACATACAAAGAGATACAAAG+AGG | 0.639704 | 1_4:+3913346 | None:intergenic |
| GATGGGGTTTATGATGTGGA+TGG | 0.644891 | 1_4:-3915769 | Msa0144420:CDS |
| CATACTAGAAATGTTAGGGG+AGG | 0.666754 | 1_4:-3913252 | Msa0144420:three_prime_UTR |
| TGACACCCAGTCTGATGTGT+GGG | 0.677476 | 1_4:+3914304 | None:intergenic |
| TAGCATACTAGAAATGTTAG+GGG | 0.703626 | 1_4:-3913255 | Msa0144420:three_prime_UTR |
| ATGACACCCAGTCTGATGTG+TGG | 0.709294 | 1_4:+3914303 | None:intergenic |
| GAAGCGCGTGAGAAACCGGG+AGG | 0.725314 | 1_4:+3916314 | None:intergenic |
| ACCCAGTCTGATGTGTGGGT+AGG | 0.740029 | 1_4:+3914308 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGATTAATTATATTGT+TGG | - | chr1_4:3913786-3913805 | Msa0144420:intron | 10.0% |
| !! | GAAAAATAATAATAAGTATA+TGG | + | chr1_4:3915248-3915267 | None:intergenic | 10.0% |
| !! | AAAATACAGAAATTATACAT+AGG | + | chr1_4:3913463-3913482 | None:intergenic | 15.0% |
| !! | TATTTAACAAAACAACAAAA+AGG | + | chr1_4:3914001-3914020 | None:intergenic | 15.0% |
| !! | TTTATATTATGGATGAAATT+AGG | - | chr1_4:3914221-3914240 | Msa0144420:intron | 15.0% |
| !! | TATGTTCTATAATATATTTG+AGG | - | chr1_4:3915158-3915177 | Msa0144420:intron | 15.0% |
| !! | TTGTATGTTATTAAAATGTT+TGG | - | chr1_4:3915549-3915568 | Msa0144420:intron | 15.0% |
| !! | TGTATGTTATTAAAATGTTT+GGG | - | chr1_4:3915550-3915569 | Msa0144420:intron | 15.0% |
| !! | TTTGAAAATAAATCTATAAC+TGG | - | chr1_4:3915888-3915907 | Msa0144420:intron | 15.0% |
| !!! | AAAAAAAATCTATAACTTGT+TGG | - | chr1_4:3915921-3915940 | Msa0144420:intron | 15.0% |
| !! | AATTAAATGGATAAAGGAAA+GGG | - | chr1_4:3913218-3913237 | Msa0144420:three_prime_UTR | 20.0% |
| !! | AGTTACAATAATTAGTTACA+TGG | + | chr1_4:3913712-3913731 | None:intergenic | 20.0% |
| !! | ATCATTAACAAGTTCTTAAA+TGG | + | chr1_4:3913842-3913861 | None:intergenic | 20.0% |
| !!! | ATTTAAGAACTTGTTAATGA+TGG | - | chr1_4:3913841-3913860 | Msa0144420:intron | 20.0% |
| !!! | TTTAAGAACTTGTTAATGAT+GGG | - | chr1_4:3913842-3913861 | Msa0144420:intron | 20.0% |
| !! | CAATGTTGATATTATTAGAA+TGG | + | chr1_4:3914083-3914102 | None:intergenic | 20.0% |
| !! | ATACAATTACAATCATTGAA+TGG | + | chr1_4:3914135-3914154 | None:intergenic | 20.0% |
| !!! | GAGGTTGATTATTTATATTA+TGG | - | chr1_4:3914210-3914229 | Msa0144420:intron | 20.0% |
| !!! | CTTAATATGTATTTGTTGAA+TGG | - | chr1_4:3914497-3914516 | Msa0144420:intron | 20.0% |
| !!! | GAACACTTTATTTTAAATTG+TGG | - | chr1_4:3914653-3914672 | Msa0144420:intron | 20.0% |
| !!! | TTTAACTCATTTTTGTTTCA+AGG | + | chr1_4:3914942-3914961 | None:intergenic | 20.0% |
| !!! | TTACCTCAAATTTTAAGTTT+TGG | - | chr1_4:3915103-3915122 | Msa0144420:intron | 20.0% |
| !!! | CTATAATATATTTGAGGTTT+AGG | - | chr1_4:3915164-3915183 | Msa0144420:intron | 20.0% |
| !! | TTAATAACATACAATGCTAT+GGG | + | chr1_4:3915543-3915562 | None:intergenic | 20.0% |
| !! | TTTAATAACATACAATGCTA+TGG | + | chr1_4:3915544-3915563 | None:intergenic | 20.0% |
| !!! | TGGTTTTTTTTTTTTTTCCT+GGG | + | chr1_4:3915592-3915611 | None:intergenic | 20.0% |
| !!! | CATTATTTCTGATATTAAAG+TGG | + | chr1_4:3915862-3915881 | None:intergenic | 20.0% |
| !!! | AGTTATAGATTTTTTTTCAG+TGG | + | chr1_4:3915918-3915937 | None:intergenic | 20.0% |
| !! | AACATAGACATTTAAAAGAA+AGG | + | chr1_4:3916456-3916475 | None:intergenic | 20.0% |
| ! | CGATTCAATTAAATGGATAA+AGG | - | chr1_4:3913212-3913231 | Msa0144420:three_prime_UTR | 25.0% |
| ! | CAATTAAATGGATAAAGGAA+AGG | - | chr1_4:3913217-3913236 | Msa0144420:three_prime_UTR | 25.0% |
| ! | TCAACTGATAATAAACGAAA+GGG | + | chr1_4:3913597-3913616 | None:intergenic | 25.0% |
| ! | TTCAACTGATAATAAACGAA+AGG | + | chr1_4:3913598-3913617 | None:intergenic | 25.0% |
| ! | CATCTGATTGTAATTGTTTA+AGG | - | chr1_4:3913740-3913759 | Msa0144420:intron | 25.0% |
| !!! | TTAAGAACTTGTTAATGATG+GGG | - | chr1_4:3913843-3913862 | Msa0144420:intron | 25.0% |
| ! | AAAGAAAAATAAAGTCGAAC+TGG | - | chr1_4:3914319-3914338 | Msa0144420:CDS | 25.0% |
| ! | ATCTTATGAAAACAACGTAT+AGG | + | chr1_4:3914355-3914374 | None:intergenic | 25.0% |
| ! | TATAAGCTGAAAACAACTTA+TGG | - | chr1_4:3914394-3914413 | Msa0144420:intron | 25.0% |
| !! | TATTTGTTGAATGGAATCAT+TGG | - | chr1_4:3914506-3914525 | Msa0144420:intron | 25.0% |
| ! | AAAATATGTAATTGCGTGTT+TGG | - | chr1_4:3914592-3914611 | Msa0144420:intron | 25.0% |
| ! | TTTCAAGAATTGTGAAAAGA+TGG | - | chr1_4:3914746-3914765 | Msa0144420:CDS | 25.0% |
| ! | ATTGATAAACTCTTGATTCT+AGG | - | chr1_4:3915036-3915055 | Msa0144420:intron | 25.0% |
| ! | TTGATAAACTCTTGATTCTA+GGG | - | chr1_4:3915037-3915056 | Msa0144420:intron | 25.0% |
| ! | ACAAAACCATGTATATACTT+AGG | + | chr1_4:3915083-3915102 | None:intergenic | 25.0% |
| ! | GAACCAAAACTTAAAATTTG+AGG | + | chr1_4:3915109-3915128 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGGTTCATTTTGT+TGG | - | chr1_4:3915116-3915135 | Msa0144420:intron | 25.0% |
| ! | ATTCTCAAGTTTGAAAATCT+TGG | - | chr1_4:3915220-3915239 | Msa0144420:intron | 25.0% |
| !! | TTCAGAGGACTAAAATATTT+TGG | + | chr1_4:3915420-3915439 | None:intergenic | 25.0% |
| !!! | CGTTTTAATTAATGTTTCAG+AGG | + | chr1_4:3915435-3915454 | None:intergenic | 25.0% |
| !! | ACATAATTTTACTGTCTTCA+AGG | - | chr1_4:3915460-3915479 | Msa0144420:intron | 25.0% |
| !!! | CTGGTTTTTTTTTTTTTTCC+TGG | + | chr1_4:3915593-3915612 | None:intergenic | 25.0% |
| ! | GGAAAAAAAAAAAAAACCAG+AGG | - | chr1_4:3915593-3915612 | Msa0144420:intron | 25.0% |
| !! | TTGCTTTATTGAGATGAAAT+TGG | - | chr1_4:3915650-3915669 | Msa0144420:intron | 25.0% |
| ! | ATTTATACACCAAATGATTG+TGG | + | chr1_4:3915748-3915767 | None:intergenic | 25.0% |
| ! | ACTTAAAGAAAAGAAACCAA+GGG | + | chr1_4:3915992-3916011 | None:intergenic | 25.0% |
| ! | AAGACAAAAAACTTAAGAAC+TGG | + | chr1_4:3916088-3916107 | None:intergenic | 25.0% |
| !!! | TTAAGTTTTTTGTCTTCTCT+TGG | - | chr1_4:3916092-3916111 | Msa0144420:intron | 25.0% |
| ! | AATAGCATACTAGAAATGTT+AGG | - | chr1_4:3916371-3916390 | Msa0144420:CDS | 25.0% |
| ! | ATAGCATACTAGAAATGTTA+GGG | - | chr1_4:3916372-3916391 | Msa0144420:CDS | 25.0% |
| ! | TGAAAGAACAATAAGAATTC+GGG | + | chr1_4:3916429-3916448 | None:intergenic | 25.0% |
| ! | CTGAAAGAACAATAAGAATT+CGG | + | chr1_4:3916430-3916449 | None:intergenic | 25.0% |
| TCTTCAGCGATTCAATTAAA+TGG | - | chr1_4:3913205-3913224 | Msa0144420:three_prime_UTR | 30.0% | |
| TGAATTATCGGAGAAATCAA+CGG | + | chr1_4:3913273-3913292 | None:intergenic | 30.0% | |
| TGGAGTAGTACTTATTAGAT+CGG | + | chr1_4:3913692-3913711 | None:intergenic | 30.0% | |
| ACAAAACAACAAAAAGGAAG+CGG | + | chr1_4:3913995-3914014 | None:intergenic | 30.0% | |
| ! | TGGATGAAATTAGGTTTGTT+TGG | - | chr1_4:3914230-3914249 | Msa0144420:intron | 30.0% |
| ATACATATTAAGACCCTGTT+TGG | + | chr1_4:3914489-3914508 | None:intergenic | 30.0% | |
| !! | TTGGTTTGTTGTAACTCATT+AGG | - | chr1_4:3914557-3914576 | Msa0144420:intron | 30.0% |
| ! | CTTGCGATGTTAAATCTTTT+AGG | - | chr1_4:3914676-3914695 | Msa0144420:intron | 30.0% |
| TATCAGCCTAAGTATATACA+TGG | - | chr1_4:3915074-3915093 | Msa0144420:intron | 30.0% | |
| ! | GTTCATTTTGTTGGATAGTT+GGG | - | chr1_4:3915125-3915144 | Msa0144420:intron | 30.0% |
| CTTACTACAAGTAATTTCTG+TGG | - | chr1_4:3915695-3915714 | Msa0144420:CDS | 30.0% | |
| GTGGTTCATCTATATTATTC+TGG | + | chr1_4:3915729-3915748 | None:intergenic | 30.0% | |
| ATAGATGAACCACAATCATT+TGG | - | chr1_4:3915736-3915755 | Msa0144420:CDS | 30.0% | |
| AATCTACCAATTCTTCACTA+TGG | + | chr1_4:3915784-3915803 | None:intergenic | 30.0% | |
| AAATCACAAAAGGATGAAGT+AGG | + | chr1_4:3915954-3915973 | None:intergenic | 30.0% | |
| CACTTAAAGAAAAGAAACCA+AGG | + | chr1_4:3915993-3916012 | None:intergenic | 30.0% | |
| CCTGAAGATACAAAAAAGTA+AGG | + | chr1_4:3916023-3916042 | None:intergenic | 30.0% | |
| !!! | CCTTACTTTTTTGTATCTTC+AGG | - | chr1_4:3916020-3916039 | Msa0144420:intron | 30.0% |
| !!! | TACTTTTTTGTATCTTCAGG+AGG | - | chr1_4:3916023-3916042 | Msa0144420:intron | 30.0% |
| TACAAACCATGTCTAATCTT+TGG | + | chr1_4:3916226-3916245 | None:intergenic | 30.0% | |
| ACATACAAAGAGATACAAAG+AGG | + | chr1_4:3916285-3916304 | None:intergenic | 30.0% | |
| CTTTGTATCTCTTTGTATGT+AGG | - | chr1_4:3916285-3916304 | Msa0144420:CDS | 30.0% | |
| TACTGCAAATCTGATGTAAA+AGG | - | chr1_4:3916347-3916366 | Msa0144420:CDS | 30.0% | |
| TAGCATACTAGAAATGTTAG+GGG | - | chr1_4:3916373-3916392 | Msa0144420:CDS | 30.0% | |
| !!! | AGGAGAATTTTTTTAGCAGT+GGG | - | chr1_4:3916396-3916415 | Msa0144420:CDS | 30.0% |
| TGAAGCAGGTATACAAAATA+TGG | - | chr1_4:3916500-3916519 | Msa0144420:five_prime_UTR | 30.0% | |
| AGAATGAGTGAAGAGAAGAA+GGG | + | chr1_4:3913188-3913207 | None:intergenic | 35.0% | |
| AAGAATGAGTGAAGAGAAGA+AGG | + | chr1_4:3913189-3913208 | None:intergenic | 35.0% | |
| ATCGCGAGAAGTTGAATTAT+CGG | + | chr1_4:3913285-3913304 | None:intergenic | 35.0% | |
| ! | ATCTTTCTTTTGGCGACTAA+GGG | + | chr1_4:3913360-3913379 | None:intergenic | 35.0% |
| ! | TGGATTCAGCATCTTTCTTT+TGG | + | chr1_4:3913370-3913389 | None:intergenic | 35.0% |
| AGAAAGATGCTGAATCCAAT+TGG | - | chr1_4:3913372-3913391 | Msa0144420:three_prime_UTR | 35.0% | |
| TGAATCCAATTGGAAATCTC+AGG | - | chr1_4:3913382-3913401 | Msa0144420:three_prime_UTR | 35.0% | |
| ACTGATAATAAACGAAAGGG+AGG | + | chr1_4:3913594-3913613 | None:intergenic | 35.0% | |
| ATTGTTGGAAACAGAAAGCT+TGG | - | chr1_4:3913801-3913820 | Msa0144420:intron | 35.0% | |
| TTGTTGGAAACAGAAAGCTT+GGG | - | chr1_4:3913802-3913821 | Msa0144420:intron | 35.0% | |
| ! | TAATGATGGGGTTTATGATG+TGG | - | chr1_4:3913855-3913874 | Msa0144420:intron | 35.0% |
| ACTGTTCACTTGTTTAGCAT+CGG | - | chr1_4:3913890-3913909 | Msa0144420:intron | 35.0% | |
| !! | ACTTTTTCCAACACTCTGTA+AGG | + | chr1_4:3913951-3913970 | None:intergenic | 35.0% |
| TTGAATGGAGAGATTCAGTA+AGG | + | chr1_4:3914120-3914139 | None:intergenic | 35.0% | |
| CTTGATGTCTATAGATAACG+AGG | - | chr1_4:3914191-3914210 | Msa0144420:intron | 35.0% | |
| AAGATATCCTAGTGAGCTTA+TGG | - | chr1_4:3914370-3914389 | Msa0144420:intron | 35.0% | |
| CTTATATCCATAAGCTCACT+AGG | + | chr1_4:3914380-3914399 | None:intergenic | 35.0% | |
| ! | GTCAGTCTCATAATTGCTTT+TGG | - | chr1_4:3914437-3914456 | Msa0144420:intron | 35.0% |
| TCAAATAAGTCGATCCAAAC+AGG | - | chr1_4:3914472-3914491 | Msa0144420:intron | 35.0% | |
| CAAATAAGTCGATCCAAACA+GGG | - | chr1_4:3914473-3914492 | Msa0144420:intron | 35.0% | |
| AACCAAAAGAGAAGAGAACT+GGG | + | chr1_4:3914543-3914562 | None:intergenic | 35.0% | |
| AAACCAAAAGAGAAGAGAAC+TGG | + | chr1_4:3914544-3914563 | None:intergenic | 35.0% | |
| !!! | TCTTTTAGGACCTTTGCAAT+TGG | - | chr1_4:3914690-3914709 | Msa0144420:intron | 35.0% |
| ACCTTACAAAGATGCTAAAG+TGG | - | chr1_4:3914837-3914856 | Msa0144420:intron | 35.0% | |
| TCCACTTTAGCATCTTTGTA+AGG | + | chr1_4:3914841-3914860 | None:intergenic | 35.0% | |
| GTATTCATCGCCCTTAATTT+GGG | - | chr1_4:3914880-3914899 | Msa0144420:intron | 35.0% | |
| TAACATGCCTCCCAAATTAA+GGG | + | chr1_4:3914893-3914912 | None:intergenic | 35.0% | |
| ! | GGTTCATTTTGTTGGATAGT+TGG | - | chr1_4:3915124-3915143 | Msa0144420:intron | 35.0% |
| AGGCAGTAACATGAATAACA+GGG | + | chr1_4:3915270-3915289 | None:intergenic | 35.0% | |
| ! | CTTCAAGGTATTATGACAAG+AGG | - | chr1_4:3915475-3915494 | Msa0144420:intron | 35.0% |
| TAACATACAATGCTATGGGT+AGG | + | chr1_4:3915539-3915558 | None:intergenic | 35.0% | |
| CATATGCCATAGTGAAGAAT+TGG | - | chr1_4:3915775-3915794 | Msa0144420:CDS | 35.0% | |
| !!! | TTTTTTGTATCTTCAGGAGG+TGG | - | chr1_4:3916026-3916045 | Msa0144420:intron | 35.0% |
| !!! | AGTTTTTTGTCTTCTCTTGG+AGG | - | chr1_4:3916095-3916114 | Msa0144420:intron | 35.0% |
| TCTTCTCTTGGAGGAATTTA+AGG | - | chr1_4:3916104-3916123 | Msa0144420:intron | 35.0% | |
| CTTGGAGGAATTTAAGGATT+TGG | - | chr1_4:3916110-3916129 | Msa0144420:intron | 35.0% | |
| GTACTGTTAGCATGTTGTAA+TGG | - | chr1_4:3916132-3916151 | Msa0144420:intron | 35.0% | |
| TGGTCACAAATGATCTCATT+AGG | - | chr1_4:3916152-3916171 | Msa0144420:intron | 35.0% | |
| !!! | GAGGAGAATTTTTTTAGCAG+TGG | - | chr1_4:3916395-3916414 | Msa0144420:CDS | 35.0% |
| !!! | GGAGAATTTTTTTAGCAGTG+GGG | - | chr1_4:3916397-3916416 | Msa0144420:CDS | 35.0% |
| TTGTATACCTGCTTCACAAT+GGG | + | chr1_4:3916496-3916515 | None:intergenic | 35.0% | |
| TTTGTATACCTGCTTCACAA+TGG | + | chr1_4:3916497-3916516 | None:intergenic | 35.0% | |
| ! | GATAAAGGAAAGGGTGTGAT+GGG | - | chr1_4:3913227-3913246 | Msa0144420:three_prime_UTR | 40.0% |
| ! | CATCTTTCTTTTGGCGACTA+AGG | + | chr1_4:3913361-3913380 | None:intergenic | 40.0% |
| GCATACCTGAGATTTCCAAT+TGG | + | chr1_4:3913390-3913409 | None:intergenic | 40.0% | |
| ! | ACACTCTGTAAGGCACTTAT+GGG | + | chr1_4:3913941-3913960 | None:intergenic | 40.0% |
| ! | AACACTCTGTAAGGCACTTA+TGG | + | chr1_4:3913942-3913961 | None:intergenic | 40.0% |
| ATAAGTGCCTTACAGAGTGT+TGG | - | chr1_4:3913941-3913960 | Msa0144420:intron | 40.0% | |
| ! | ATCCCAGTTCTCTTCTCTTT+TGG | - | chr1_4:3914538-3914557 | Msa0144420:intron | 40.0% |
| ATCCACAGTTCCAATTGCAA+AGG | + | chr1_4:3914703-3914722 | None:intergenic | 40.0% | |
| ATGCTAAAGTGGAGCTTCTT+GGG | - | chr1_4:3914848-3914867 | Msa0144420:intron | 40.0% | |
| GGTATTCATCGCCCTTAATT+TGG | - | chr1_4:3914879-3914898 | Msa0144420:intron | 40.0% | |
| GTAACATGCCTCCCAAATTA+AGG | + | chr1_4:3914894-3914913 | None:intergenic | 40.0% | |
| ! | AATTTGGGAGGCATGTTACT+AGG | - | chr1_4:3914895-3914914 | Msa0144420:intron | 40.0% |
| CATGTTACTAGGTGTTTGGA+AGG | - | chr1_4:3914906-3914925 | Msa0144420:intron | 40.0% | |
| AGGCTGATAAATTCACTGCT+AGG | + | chr1_4:3915063-3915082 | None:intergenic | 40.0% | |
| GAGGCAGTAACATGAATAAC+AGG | + | chr1_4:3915271-3915290 | None:intergenic | 40.0% | |
| AATGAATTGAGCTGCAGAAG+AGG | + | chr1_4:3915290-3915309 | None:intergenic | 40.0% | |
| TCTTCTGCAGCTCAATTCAT+TGG | - | chr1_4:3915289-3915308 | Msa0144420:intron | 40.0% | |
| CTTCTGCAGCTCAATTCATT+GGG | - | chr1_4:3915290-3915309 | Msa0144420:intron | 40.0% | |
| AAAGAAAATCCAACCTGAGC+AGG | + | chr1_4:3915359-3915378 | None:intergenic | 40.0% | |
| AAGCATGTAATCATTGCCTC+TGG | + | chr1_4:3915612-3915631 | None:intergenic | 40.0% | |
| CAGCTCATGGAAATCACAAA+AGG | + | chr1_4:3915964-3915983 | None:intergenic | 40.0% | |
| ! | CTTAAGAACTGGAGCATCAA+CGG | + | chr1_4:3916077-3916096 | None:intergenic | 40.0% |
| ! | TCTTTGGTGACTGCAAGTAT+TGG | + | chr1_4:3916210-3916229 | None:intergenic | 40.0% |
| CAGTCACCAAAGATTAGACA+TGG | - | chr1_4:3916217-3916236 | Msa0144420:intron | 40.0% | |
| CATACTAGAAATGTTAGGGG+AGG | - | chr1_4:3916376-3916395 | Msa0144420:CDS | 40.0% | |
| ! | GGATAAAGGAAAGGGTGTGA+TGG | - | chr1_4:3913226-3913245 | Msa0144420:three_prime_UTR | 45.0% |
| GGTAGAATCGTCTTGATCGA+GGG | + | chr1_4:3913339-3913358 | None:intergenic | 45.0% | |
| CTCAACTCATAGATGCCGAA+CGG | - | chr1_4:3913656-3913675 | Msa0144420:intron | 45.0% | |
| TCAACTCATAGATGCCGAAC+GGG | - | chr1_4:3913657-3913676 | Msa0144420:intron | 45.0% | |
| ATCGGTCAATCATTCCCGTT+CGG | + | chr1_4:3913674-3913693 | None:intergenic | 45.0% | |
| GATGGGGTTTATGATGTGGA+TGG | - | chr1_4:3913859-3913878 | Msa0144420:intron | 45.0% | |
| GTATCACCTTCTCAGCTCTT+TGG | - | chr1_4:3913912-3913931 | Msa0144420:intron | 45.0% | |
| CTAGGTGTGTGAGTTTCAAG+TGG | + | chr1_4:3914040-3914059 | None:intergenic | 45.0% | |
| CACTTGAAACTCACACACCT+AGG | - | chr1_4:3914038-3914057 | Msa0144420:intron | 45.0% | |
| ATCTTCACCTGAGATCTCCT+AGG | + | chr1_4:3914058-3914077 | None:intergenic | 45.0% | |
| GACCTTTGCAATTGGAACTG+TGG | - | chr1_4:3914698-3914717 | Msa0144420:intron | 45.0% | |
| GATGCTAAAGTGGAGCTTCT+TGG | - | chr1_4:3914847-3914866 | Msa0144420:intron | 45.0% | |
| AGGGCGATGAATACCAACTT+AGG | + | chr1_4:3914874-3914893 | None:intergenic | 45.0% | |
| ! | TTCATCGCCCTTAATTTGGG+AGG | - | chr1_4:3914883-3914902 | Msa0144420:intron | 45.0% |
| GAGGCATGTTACTAGGTGTT+TGG | - | chr1_4:3914902-3914921 | Msa0144420:intron | 45.0% | |
| GCAACAATATCTGTAGACCC+AGG | - | chr1_4:3915572-3915591 | Msa0144420:intron | 45.0% | |
| CTTCACAATGGGAAGGTTAC+AGG | + | chr1_4:3916485-3916504 | None:intergenic | 45.0% | |
| TAACCTTCCCATTGTGAAGC+AGG | - | chr1_4:3916486-3916505 | Msa0144420:five_prime_UTR | 45.0% | |
| ATACCTGCTTCACAATGGGA+AGG | + | chr1_4:3916492-3916511 | None:intergenic | 45.0% | |
| ! | AAGGGTGTGATGGGATCTTC+TGG | - | chr1_4:3913236-3913255 | Msa0144420:three_prime_UTR | 50.0% |
| TGGGATCTTCTGGACGAAGA+TGG | - | chr1_4:3913246-3913265 | Msa0144420:three_prime_UTR | 50.0% | |
| GGGATCTTCTGGACGAAGAT+GGG | - | chr1_4:3913247-3913266 | Msa0144420:three_prime_UTR | 50.0% | |
| CGCGATATTATCGATCCTCC+CGG | - | chr1_4:3913299-3913318 | Msa0144420:three_prime_UTR | 50.0% | |
| GGGTAGAATCGTCTTGATCG+AGG | + | chr1_4:3913340-3913359 | None:intergenic | 50.0% | |
| GAAAGCTTGGGAAGTTGCAC+AGG | - | chr1_4:3913814-3913833 | Msa0144420:intron | 50.0% | |
| GGGTTTATGATGTGGATGGC+TGG | - | chr1_4:3913863-3913882 | Msa0144420:intron | 50.0% | |
| TCACACACCTAGGAGATCTC+AGG | - | chr1_4:3914048-3914067 | Msa0144420:intron | 50.0% | |
| TTCCTACCCACACATCAGAC+TGG | - | chr1_4:3915318-3915337 | Msa0144420:intron | 50.0% | |
| TCCTACCCACACATCAGACT+GGG | - | chr1_4:3915319-3915338 | Msa0144420:intron | 50.0% | |
| TGACACCCAGTCTGATGTGT+GGG | + | chr1_4:3915327-3915346 | None:intergenic | 50.0% | |
| ATGACACCCAGTCTGATGTG+TGG | + | chr1_4:3915328-3915347 | None:intergenic | 50.0% | |
| GGGTTGCCAAAGAGCTGAGA+AGG | + | chr1_4:3913921-3913940 | None:intergenic | 55.0% | |
| GGAGCTTCTTGGGCCTAAGT+TGG | - | chr1_4:3914858-3914877 | Msa0144420:intron | 55.0% | |
| ACCCAGTCTGATGTGTGGGT+AGG | + | chr1_4:3915323-3915342 | None:intergenic | 55.0% | |
| GTCATCCTTAGCACCTGCTC+AGG | - | chr1_4:3915343-3915362 | Msa0144420:intron | 55.0% | |
| TCCTTAGCACCTGCTCAGGT+TGG | - | chr1_4:3915347-3915366 | Msa0144420:intron | 55.0% | |
| TCCAACCTGAGCAGGTGCTA+AGG | + | chr1_4:3915351-3915370 | None:intergenic | 55.0% | |
| TCCATGAGCTGCAACACCCT+TGG | - | chr1_4:3915973-3915992 | Msa0144420:intron | 55.0% | |
| !! | ACCAAGGGTGTTGCAGCTCA+TGG | + | chr1_4:3915977-3915996 | None:intergenic | 55.0% |
| ! | CTTCAGGAGGTGGAGTACTC+AGG | - | chr1_4:3916036-3916055 | Msa0144420:intron | 55.0% |
| ! | AGGAGGTGGAGTACTCAGGT+GGG | - | chr1_4:3916040-3916059 | Msa0144420:intron | 55.0% |
| ! | AGGGAAGCGCGTGAGAAACC+GGG | + | chr1_4:3913320-3913339 | None:intergenic | 60.0% |
| ! | GAGGGAAGCGCGTGAGAAAC+CGG | + | chr1_4:3913321-3913340 | None:intergenic | 60.0% |
| ! | CAGGAGGTGGAGTACTCAGG+TGG | - | chr1_4:3916039-3916058 | Msa0144420:intron | 60.0% |
| ! | GGAGGTGGAGTACTCAGGTG+GGG | - | chr1_4:3916041-3916060 | Msa0144420:intron | 60.0% |
| ! | GAGGTGGAGTACTCAGGTGG+GGG | - | chr1_4:3916042-3916061 | Msa0144420:intron | 60.0% |
| GAAGCGCGTGAGAAACCGGG+AGG | + | chr1_4:3913317-3913336 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 3913123 | 3916527 | 3913123 | ID=Msa0144420;Name=Msa0144420 |
| chr1_4 | mRNA | 3913123 | 3916527 | 3913123 | ID=Msa0144420-mRNA-1;Parent=Msa0144420;Name=Msa0144420-mRNA-1;_AED=0.06;_eAED=0.06;_QI=101|1|1|1|1|1|5|447|178 |
| chr1_4 | exon | 3913123 | 3913608 | 3913123 | ID=Msa0144420-mRNA-1:exon:1636;Parent=Msa0144420-mRNA-1 |
| chr1_4 | exon | 3914286 | 3914351 | 3914286 | ID=Msa0144420-mRNA-1:exon:1635;Parent=Msa0144420-mRNA-1 |
| chr1_4 | exon | 3914723 | 3914820 | 3914723 | ID=Msa0144420-mRNA-1:exon:1634;Parent=Msa0144420-mRNA-1 |
| chr1_4 | exon | 3915682 | 3915835 | 3915682 | ID=Msa0144420-mRNA-1:exon:1633;Parent=Msa0144420-mRNA-1 |
| chr1_4 | exon | 3916247 | 3916527 | 3916247 | ID=Msa0144420-mRNA-1:exon:1632;Parent=Msa0144420-mRNA-1 |
| chr1_4 | five_prime_UTR | 3916427 | 3916527 | 3916427 | ID=Msa0144420-mRNA-1:five_prime_utr;Parent=Msa0144420-mRNA-1 |
| chr1_4 | CDS | 3916247 | 3916426 | 3916247 | ID=Msa0144420-mRNA-1:cds;Parent=Msa0144420-mRNA-1 |
| chr1_4 | CDS | 3915682 | 3915835 | 3915682 | ID=Msa0144420-mRNA-1:cds;Parent=Msa0144420-mRNA-1 |
| chr1_4 | CDS | 3914723 | 3914820 | 3914723 | ID=Msa0144420-mRNA-1:cds;Parent=Msa0144420-mRNA-1 |
| chr1_4 | CDS | 3914286 | 3914351 | 3914286 | ID=Msa0144420-mRNA-1:cds;Parent=Msa0144420-mRNA-1 |
| chr1_4 | CDS | 3913570 | 3913608 | 3913570 | ID=Msa0144420-mRNA-1:cds;Parent=Msa0144420-mRNA-1 |
| chr1_4 | three_prime_UTR | 3913123 | 3913569 | 3913123 | ID=Msa0144420-mRNA-1:three_prime_utr;Parent=Msa0144420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
