Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149430 | XP_003588527.1 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149430 | G7I4B0 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0149430 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008210 | Msa0149430 | 0.984062 | 1.756756e-159 | -8.615850e-47 |
| Msa0057380 | Msa0149430 | 0.988952 | 4.428424e-176 | -8.615850e-47 |
| Msa0078120 | Msa0149430 | 0.815181 | 1.054349e-51 | -8.615850e-47 |
| Msa0149430 | Msa0236420 | 0.808776 | 2.622633e-50 | -8.615850e-47 |
| Msa0149430 | Msa0270960 | 0.808755 | 2.649599e-50 | -8.615850e-47 |
| Msa0149430 | Msa0278580 | 0.837351 | 5.473077e-57 | -8.615850e-47 |
| Msa0149430 | Msa0317960 | 0.826045 | 3.363868e-54 | -8.615850e-47 |
| Msa0149430 | Msa0388730 | 0.805155 | 1.530014e-49 | -8.615850e-47 |
| Msa0149430 | Msa0432160 | 0.808207 | 3.469275e-50 | -8.615850e-47 |
| Msa0149430 | Msa0476680 | 0.814901 | 1.216693e-51 | -8.615850e-47 |
| Msa0149430 | Msa0521010 | 0.812833 | 3.474857e-51 | -8.615850e-47 |
| Msa0149430 | Msa0600590 | 0.801876 | 7.320098e-49 | -8.615850e-47 |
| Msa0149430 | Msa0689430 | 0.996448 | 1.174051e-227 | -8.615850e-47 |
| Msa0149430 | Msa0709270 | 0.805210 | 1.489923e-49 | -8.615850e-47 |
| Msa0149430 | Msa0965290 | 0.805738 | 1.154958e-49 | -8.615850e-47 |
| Msa0149430 | Msa0999680 | 0.807198 | 5.682035e-50 | -8.615850e-47 |
| Msa0149430 | Msa1089460 | 0.833837 | 4.240659e-56 | -8.615850e-47 |
| Msa0149430 | Msa1122150 | 0.819266 | 1.270925e-52 | -8.615850e-47 |
| Msa0149430 | Msa1160560 | 0.817362 | 3.430236e-52 | -8.615850e-47 |
| Msa0149430 | Msa1226460 | 0.812977 | 3.231084e-51 | -8.615850e-47 |
| Msa0149430 | Msa1346840 | 0.811953 | 5.408805e-51 | -8.615850e-47 |
| Msa0149430 | Msa1368360 | 0.808704 | 2.717758e-50 | -8.615850e-47 |
| Msa0149430 | Msa1369920 | -0.832127 | 1.128392e-55 | -8.615850e-47 |
| Msa0149430 | Msa1393570 | 0.806131 | 9.548711e-50 | -8.615850e-47 |
| Msa0149430 | Msa1419840 | 0.823377 | 1.431199e-53 | -8.615850e-47 |
| Msa0149430 | Msa1442920 | 0.804539 | 2.057661e-49 | -8.615850e-47 |
| Msa0149430 | Msa1452710 | 0.800370 | 1.488061e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149430 | MtrunA17_Chr1g0147111 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Msa0149430 | MtrunA17_Chr3g0126721 | 66.192 | 281 | 63 | 6 | 1 | 254 | 1 | 276 | 2.22e-114 | 329 |
| Msa0149430 | MtrunA17_Chr8g0387241 | 51.429 | 70 | 32 | 1 | 185 | 252 | 200 | 269 | 3.06e-17 | 79.7 |
| Msa0149430 | MtrunA17_Chr1g0168401 | 64.583 | 48 | 17 | 0 | 206 | 253 | 317 | 364 | 4.87e-16 | 77.0 |
| Msa0149430 | MtrunA17_Chr1g0186171 | 57.143 | 56 | 24 | 0 | 198 | 253 | 306 | 361 | 5.34e-16 | 77.0 |
| Msa0149430 | MtrunA17_Chr4g0030421 | 58.000 | 50 | 21 | 0 | 204 | 253 | 31 | 80 | 9.73e-16 | 72.0 |
| Msa0149430 | MtrunA17_Chr5g0397361 | 50.000 | 70 | 34 | 1 | 186 | 254 | 150 | 219 | 6.52e-15 | 72.4 |
| Msa0149430 | MtrunA17_Chr2g0327621 | 56.863 | 51 | 22 | 0 | 206 | 256 | 153 | 203 | 7.64e-15 | 72.0 |
| Msa0149430 | MtrunA17_Chr2g0311591 | 53.061 | 49 | 23 | 0 | 204 | 252 | 166 | 214 | 7.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0149430 | AT4G27900.1 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0149430 | AT4G27900.2 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0149430 | AT5G53420.1 | 44.649 | 271 | 122 | 8 | 1 | 252 | 1 | 262 | 1.60e-69 | 215 |
| Msa0149430 | AT5G53420.2 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0149430 | AT5G53420.5 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0149430 | AT5G53420.4 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0149430 | AT5G53420.3 | 36.538 | 208 | 107 | 6 | 1 | 192 | 1 | 199 | 1.28e-33 | 121 |
| Msa0149430 | AT5G41380.1 | 55.932 | 59 | 26 | 0 | 195 | 253 | 202 | 260 | 6.91e-17 | 79.0 |
| Msa0149430 | AT1G04500.4 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0149430 | AT1G04500.1 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0149430 | AT1G04500.3 | 38.583 | 127 | 62 | 4 | 139 | 253 | 202 | 324 | 1.32e-16 | 79.0 |
| Msa0149430 | AT1G63820.1 | 62.000 | 50 | 19 | 0 | 204 | 253 | 188 | 237 | 1.51e-16 | 77.8 |
| Msa0149430 | AT2G33350.2 | 56.452 | 62 | 24 | 1 | 192 | 253 | 297 | 355 | 3.86e-16 | 77.8 |
| Msa0149430 | AT2G33350.1 | 56.452 | 62 | 24 | 1 | 192 | 253 | 298 | 356 | 3.98e-16 | 77.8 |
| Msa0149430 | AT2G33350.4 | 56.452 | 62 | 24 | 1 | 192 | 253 | 286 | 344 | 4.34e-16 | 77.4 |
| Msa0149430 | AT2G33350.5 | 64.000 | 50 | 18 | 0 | 204 | 253 | 315 | 364 | 4.51e-16 | 77.4 |
| Msa0149430 | AT5G59990.1 | 59.091 | 44 | 18 | 0 | 215 | 258 | 170 | 213 | 1.04e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAATTAATTCAGTTAA+AGG | 0.186554 | 1_4:+10200757 | None:intergenic |
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1_4:+10201566 | None:intergenic |
| TTTCTTTCTCTTACTACAAC+TGG | 0.317260 | 1_4:-10204742 | Msa0149430:five_prime_UTR |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1_4:-10202209 | Msa0149430:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1_4:+10200815 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1_4:+10202244 | None:intergenic |
| AGTACTAATGGCAATTTGTA+TGG | 0.364332 | 1_4:+10200365 | None:intergenic |
| GAATTATTTCTAACAATGAT+TGG | 0.365515 | 1_4:-10200417 | Msa0149430:three_prime_UTR |
| TGGGAAAATTATAGACTTGA+TGG | 0.366764 | 1_4:-10200660 | Msa0149430:three_prime_UTR |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1_4:-10202160 | Msa0149430:CDS |
| GCAATTTGTATGGATCAATA+TGG | 0.372128 | 1_4:+10200375 | None:intergenic |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1_4:-10200807 | Msa0149430:CDS |
| GTTTCAATGAGAAACATAAA+AGG | 0.384534 | 1_4:+10204700 | None:intergenic |
| GATTGTGAGGAAGGGGTTTG+AGG | 0.386629 | 1_4:+10204796 | None:intergenic |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1_4:-10201552 | Msa0149430:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1_4:-10200859 | Msa0149430:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1_4:+10202172 | None:intergenic |
| GACCTTCTAGATATGTATAT+AGG | 0.415169 | 1_4:-10200544 | Msa0149430:three_prime_UTR |
| CTACAAAGAAAAGGCTACTA+AGG | 0.418223 | 1_4:+10200575 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1_4:+10202142 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1_4:-10202204 | Msa0149430:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1_4:-10202226 | Msa0149430:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1_4:+10202302 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1_4:+10202238 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 1_4:+10204608 | None:intergenic |
| GTATGTAAAGATTGTGAGGA+AGG | 0.455281 | 1_4:+10204787 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1_4:-10201551 | Msa0149430:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1_4:+10201615 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1_4:+10202152 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1_4:-10202446 | Msa0149430:CDS |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 1_4:-10204552 | Msa0149430:intron |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 1_4:+10204609 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1_4:+10202516 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1_4:-10202515 | Msa0149430:CDS |
| AACCTATATACATATCTAGA+AGG | 0.488206 | 1_4:+10200542 | None:intergenic |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1_4:+10202485 | None:intergenic |
| CATATCCATCTACAAAGAAA+AGG | 0.491733 | 1_4:+10200566 | None:intergenic |
| TATAACTTGAGCAGGTATCA+TGG | 0.496613 | 1_4:-10200632 | Msa0149430:three_prime_UTR |
| GCTACTAAGGAAAACTGCTT+AGG | 0.497063 | 1_4:+10200588 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1_4:-10202431 | Msa0149430:CDS |
| TGGAATTCTATAACTTGAGC+AGG | 0.500490 | 1_4:-10200640 | Msa0149430:three_prime_UTR |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 1_4:+10204544 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1_4:-10201678 | Msa0149430:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1_4:-10202557 | Msa0149430:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1_4:+10202286 | None:intergenic |
| TCCCATCACATAGCACTACC+AGG | 0.529438 | 1_4:+10200678 | None:intergenic |
| ATGTAAAGATTGTGAGGAAG+GGG | 0.535767 | 1_4:+10204789 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1_4:+10202496 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1_4:+10202160 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1_4:-10202556 | Msa0149430:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1_4:-10202196 | Msa0149430:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1_4:+10202316 | None:intergenic |
| GTTTGATGAATAATAAAAGA+AGG | 0.543872 | 1_4:-10200522 | Msa0149430:three_prime_UTR |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1_4:-10202469 | Msa0149430:CDS |
| TATGTAAAGATTGTGAGGAA+GGG | 0.546950 | 1_4:+10204788 | None:intergenic |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1_4:-10202509 | Msa0149430:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1_4:+10202517 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1_4:+10202143 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1_4:+10201634 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1_4:-10201538 | Msa0149430:intron |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1_4:-10202445 | Msa0149430:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1_4:+10201629 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1_4:-10200787 | Msa0149430:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1_4:-10202465 | Msa0149430:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1_4:-10200855 | Msa0149430:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1_4:-10201672 | Msa0149430:intron |
| GCCTGGTAGTGCTATGTGAT+GGG | 0.609531 | 1_4:-10200679 | Msa0149430:three_prime_UTR |
| AGCCTGGTAGTGCTATGTGA+TGG | 0.609985 | 1_4:-10200680 | Msa0149430:three_prime_UTR |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1_4:-10200824 | Msa0149430:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1_4:-10201657 | Msa0149430:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 1_4:+10202465 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1_4:-10202466 | Msa0149430:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1_4:-10201563 | Msa0149430:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1_4:+10202330 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1_4:-10201638 | Msa0149430:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1_4:-10200804 | Msa0149430:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 1_4:+10202581 | None:intergenic |
| GTATGTATGTAAAGATTGTG+AGG | 0.669763 | 1_4:+10204783 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1_4:-10202464 | Msa0149430:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1_4:-10201548 | Msa0149430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTCTTCAATTTTA+TGG | - | chr1_4:10201343-10201362 | Msa0149430:intron | 10.0% |
| !! | ATACAATACTAATATTTAAA+AGG | - | chr1_4:10202447-10202466 | Msa0149430:CDS | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | - | chr1_4:10203127-10203146 | Msa0149430:intron | 10.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | + | chr1_4:10200673-10200692 | None:intergenic | 15.0% |
| !!! | ATATTTCTTAATAGTTTTCT+AGG | - | chr1_4:10200848-10200867 | Msa0149430:CDS | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | - | chr1_4:10201012-10201031 | Msa0149430:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | - | chr1_4:10201069-10201088 | Msa0149430:intron | 15.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | - | chr1_4:10201143-10201162 | Msa0149430:intron | 15.0% |
| !! | ATATTATTACCAAGAAAAAA+GGG | + | chr1_4:10201455-10201474 | None:intergenic | 15.0% |
| !! | AATATTATTACCAAGAAAAA+AGG | + | chr1_4:10201456-10201475 | None:intergenic | 15.0% |
| !! | TTGAAGTTAGATTAATTTAA+CGG | - | chr1_4:10201631-10201650 | Msa0149430:CDS | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | - | chr1_4:10202480-10202499 | Msa0149430:CDS | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | - | chr1_4:10203158-10203177 | Msa0149430:intron | 15.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | + | chr1_4:10200912-10200931 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | - | chr1_4:10200977-10200996 | Msa0149430:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | + | chr1_4:10201337-10201356 | None:intergenic | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | - | chr1_4:10201460-10201479 | Msa0149430:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | - | chr1_4:10201494-10201513 | Msa0149430:intron | 20.0% |
| !! | TAAATATATCGTTACAAAAG+AGG | - | chr1_4:10201532-10201551 | Msa0149430:intron | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | + | chr1_4:10201765-10201784 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | - | chr1_4:10201776-10201795 | Msa0149430:intron | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | - | chr1_4:10201899-10201918 | Msa0149430:intron | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | - | chr1_4:10202413-10202432 | Msa0149430:intron | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | - | chr1_4:10202610-10202629 | Msa0149430:intron | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | - | chr1_4:10202611-10202630 | Msa0149430:intron | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | + | chr1_4:10203153-10203172 | None:intergenic | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | + | chr1_4:10203281-10203300 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | + | chr1_4:10203406-10203425 | None:intergenic | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | - | chr1_4:10203730-10203749 | Msa0149430:intron | 20.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | + | chr1_4:10204001-10204020 | None:intergenic | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | + | chr1_4:10204286-10204305 | None:intergenic | 20.0% |
| !! | TCTTCAATTAATTCAGTTAA+AGG | + | chr1_4:10204413-10204432 | None:intergenic | 20.0% |
| !! | GTTTGATGAATAATAAAAGA+AGG | - | chr1_4:10204645-10204664 | Msa0149430:exon | 20.0% |
| !!! | GAATTATTTCTAACAATGAT+TGG | - | chr1_4:10204750-10204769 | Msa0149430:five_prime_UTR | 20.0% |
| ! | GTTTCAATGAGAAACATAAA+AGG | + | chr1_4:10200470-10200489 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | + | chr1_4:10200643-10200662 | None:intergenic | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | - | chr1_4:10201287-10201306 | Msa0149430:intron | 25.0% |
| !!! | CATATTATTCCCTTTTTTCT+TGG | - | chr1_4:10201443-10201462 | Msa0149430:intron | 25.0% |
| ! | ATTAATCTAACTTCAAAGTG+CGG | + | chr1_4:10201627-10201646 | None:intergenic | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | - | chr1_4:10201898-10201917 | Msa0149430:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | + | chr1_4:10201961-10201980 | None:intergenic | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | - | chr1_4:10202161-10202180 | Msa0149430:CDS | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | - | chr1_4:10202276-10202295 | Msa0149430:CDS | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | + | chr1_4:10202302-10202321 | None:intergenic | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr1_4:10202814-10202833 | Msa0149430:intron | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr1_4:10203066-10203085 | Msa0149430:intron | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | - | chr1_4:10203078-10203097 | Msa0149430:intron | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | + | chr1_4:10203253-10203272 | None:intergenic | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | - | chr1_4:10203380-10203399 | Msa0149430:intron | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | + | chr1_4:10203452-10203471 | None:intergenic | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | - | chr1_4:10203453-10203472 | Msa0149430:intron | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | + | chr1_4:10203460-10203479 | None:intergenic | 25.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | + | chr1_4:10203705-10203724 | None:intergenic | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | - | chr1_4:10203736-10203755 | Msa0149430:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | - | chr1_4:10204290-10204309 | Msa0149430:intron | 25.0% |
| ! | AACCTATATACATATCTAGA+AGG | + | chr1_4:10204628-10204647 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAAAAAAAAGAG+AGG | - | chr1_4:10204660-10204679 | Msa0149430:five_prime_UTR | 25.0% |
| TATGTAAAGATTGTGAGGAA+GGG | + | chr1_4:10200382-10200401 | None:intergenic | 30.0% | |
| GTATGTATGTAAAGATTGTG+AGG | + | chr1_4:10200387-10200406 | None:intergenic | 30.0% | |
| TTTCTTTCTCTTACTACAAC+TGG | - | chr1_4:10200425-10200444 | Msa0149430:three_prime_UTR | 30.0% | |
| ! | AAACATTTTTGTTAGCTGAG+AGG | + | chr1_4:10200518-10200537 | None:intergenic | 30.0% |
| ACAAAAATGTTTGCAGAAAC+TGG | - | chr1_4:10200526-10200545 | Msa0149430:three_prime_UTR | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | + | chr1_4:10200561-10200580 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | + | chr1_4:10200562-10200581 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | + | chr1_4:10200644-10200663 | None:intergenic | 30.0% | |
| !! | ATCTGGAAAAGTGTTACAAA+AGG | - | chr1_4:10201266-10201285 | Msa0149430:intron | 30.0% |
| !!! | GTAATCATGCTTGCTATTTT+TGG | - | chr1_4:10201554-10201573 | Msa0149430:CDS | 30.0% |
| ! | AACTTTTCGTACAAGCAAAA+TGG | + | chr1_4:10201741-10201760 | None:intergenic | 30.0% |
| TATTACTCAGCTCAAGAATA+TGG | + | chr1_4:10201804-10201823 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | - | chr1_4:10201909-10201928 | Msa0149430:intron | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | - | chr1_4:10201910-10201929 | Msa0149430:intron | 30.0% |
| CTTTCTCTCTCTTTGTAAAA+TGG | - | chr1_4:10202216-10202235 | Msa0149430:CDS | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | + | chr1_4:10202253-10202272 | None:intergenic | 30.0% | |
| ! | GTTTTCACTTTAACTGTGTA+AGG | - | chr1_4:10202342-10202361 | Msa0149430:CDS | 30.0% |
| AATGACAAAAGACATACTAG+GGG | + | chr1_4:10202518-10202537 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | + | chr1_4:10202519-10202538 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | + | chr1_4:10202520-10202539 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | + | chr1_4:10202854-10202873 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | + | chr1_4:10202926-10202945 | None:intergenic | 30.0% | |
| ! | CTCTTTGATAATAGTACATC+AGG | + | chr1_4:10202932-10202951 | None:intergenic | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr1_4:10202958-10202977 | Msa0149430:intron | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | - | chr1_4:10202963-10202982 | Msa0149430:intron | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | - | chr1_4:10203031-10203050 | Msa0149430:intron | 30.0% |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr1_4:10203247-10203266 | None:intergenic | 30.0% |
| TATGTTGATGTATCTAGACT+CGG | - | chr1_4:10203301-10203320 | Msa0149430:intron | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | - | chr1_4:10203489-10203508 | Msa0149430:intron | 30.0% | |
| AAGAAAAACTCTCCAGATAT+AGG | - | chr1_4:10203589-10203608 | Msa0149430:intron | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | + | chr1_4:10203604-10203623 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | - | chr1_4:10203604-10203623 | Msa0149430:intron | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | + | chr1_4:10203662-10203681 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | + | chr1_4:10203876-10203895 | None:intergenic | 30.0% | |
| ! | GGAGTATTAGTATTTGCAAA+TGG | + | chr1_4:10203937-10203956 | None:intergenic | 30.0% |
| TTTGCAAATACTAATACTCC+TGG | - | chr1_4:10203937-10203956 | Msa0149430:intron | 30.0% | |
| TCAACATTATACTTCATACC+AGG | + | chr1_4:10203958-10203977 | None:intergenic | 30.0% | |
| ! | AATCATTGCTTCAACTTTTG+AGG | - | chr1_4:10204088-10204107 | Msa0149430:intron | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | + | chr1_4:10204191-10204210 | None:intergenic | 30.0% |
| TGCATCAGATCAAAAAAAGA+TGG | - | chr1_4:10204461-10204480 | Msa0149430:intron | 30.0% | |
| TGGGAAAATTATAGACTTGA+TGG | - | chr1_4:10204507-10204526 | Msa0149430:intron | 30.0% | |
| CATATCCATCTACAAAGAAA+AGG | + | chr1_4:10204604-10204623 | None:intergenic | 30.0% | |
| GACCTTCTAGATATGTATAT+AGG | - | chr1_4:10204623-10204642 | Msa0149430:CDS | 30.0% | |
| AGGAAAAAAAAAGAGAGGTA+AGG | - | chr1_4:10204665-10204684 | Msa0149430:five_prime_UTR | 30.0% | |
| GCAATTTGTATGGATCAATA+TGG | + | chr1_4:10204795-10204814 | None:intergenic | 30.0% | |
| ATGTAAAGATTGTGAGGAAG+GGG | + | chr1_4:10200381-10200400 | None:intergenic | 35.0% | |
| GTATGTAAAGATTGTGAGGA+AGG | + | chr1_4:10200383-10200402 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | - | chr1_4:10200615-10200634 | Msa0149430:three_prime_UTR | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | + | chr1_4:10200754-10200773 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | - | chr1_4:10200753-10200772 | Msa0149430:three_prime_UTR | 35.0% | |
| TCAATAAACCTCTCCTTAGT+GGG | + | chr1_4:10201410-10201429 | None:intergenic | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | + | chr1_4:10201411-10201430 | None:intergenic | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | - | chr1_4:10201413-10201432 | Msa0149430:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | + | chr1_4:10201835-10201854 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | + | chr1_4:10201968-10201987 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | + | chr1_4:10202011-10202030 | None:intergenic | 35.0% | |
| AACTACTGCAGAAAATTCTC+AGG | + | chr1_4:10202105-10202124 | None:intergenic | 35.0% | |
| ! | GAATGATACCGAGTTTTCAT+AGG | + | chr1_4:10202172-10202191 | None:intergenic | 35.0% |
| CTCTCTTTGTAAAATGGTTG+AGG | - | chr1_4:10202222-10202241 | Msa0149430:CDS | 35.0% | |
| ! | TGGCCTTAACAATTACTTGA+TGG | - | chr1_4:10202296-10202315 | Msa0149430:CDS | 35.0% |
| CTCTGCATTTAAACACAGTA+AGG | + | chr1_4:10202563-10202582 | None:intergenic | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | + | chr1_4:10202589-10202608 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | + | chr1_4:10202840-10202859 | None:intergenic | 35.0% | |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr1_4:10202941-10202960 | Msa0149430:intron | 35.0% |
| AATCAATTCCAGGGAAATCA+AGG | + | chr1_4:10203018-10203037 | None:intergenic | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr1_4:10203246-10203265 | None:intergenic | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr1_4:10203248-10203267 | None:intergenic | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr1_4:10203260-10203279 | Msa0149430:intron | 35.0% |
| ATGTTGATGTATCTAGACTC+GGG | - | chr1_4:10203302-10203321 | Msa0149430:intron | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | - | chr1_4:10203615-10203634 | Msa0149430:intron | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | - | chr1_4:10203616-10203635 | Msa0149430:intron | 35.0% | |
| ! | AAACTTTGGGAGGAAAATCA+AGG | - | chr1_4:10203629-10203648 | Msa0149430:intron | 35.0% |
| TACTTGCTTCTCTTACATCA+GGG | + | chr1_4:10203765-10203784 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | + | chr1_4:10203766-10203785 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | + | chr1_4:10203812-10203831 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | - | chr1_4:10203814-10203833 | Msa0149430:intron | 35.0% | |
| ! | AACAAACTCGTCCATTGATT+TGG | - | chr1_4:10203862-10203881 | Msa0149430:intron | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | - | chr1_4:10203881-10203900 | Msa0149430:intron | 35.0% |
| TGCATAATGCAGTTATTGCA+GGG | - | chr1_4:10203908-10203927 | Msa0149430:intron | 35.0% | |
| AAAAAACTGCATCAGTAGCA+AGG | - | chr1_4:10204159-10204178 | Msa0149430:intron | 35.0% | |
| ! | TTAAAAGCATGCAAGGGATT+AGG | + | chr1_4:10204185-10204204 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | + | chr1_4:10204192-10204211 | None:intergenic | 35.0% |
| CAAAAAAAGATGGAAAAGCC+TGG | - | chr1_4:10204471-10204490 | Msa0149430:intron | 35.0% | |
| TGGAATTCTATAACTTGAGC+AGG | - | chr1_4:10204527-10204546 | Msa0149430:intron | 35.0% | |
| TATAACTTGAGCAGGTATCA+TGG | - | chr1_4:10204535-10204554 | Msa0149430:intron | 35.0% | |
| ! | AAAACTGCTTAGGAGTTTTG+AGG | + | chr1_4:10204572-10204591 | None:intergenic | 35.0% |
| CTACAAAGAAAAGGCTACTA+AGG | + | chr1_4:10204595-10204614 | None:intergenic | 35.0% | |
| ! | AGTAGCCTTTTCTTTGTAGA+TGG | - | chr1_4:10204596-10204615 | Msa0149430:CDS | 35.0% |
| AGTCATACTCAAAGCACAAG+TGG | - | chr1_4:10201214-10201233 | Msa0149430:intron | 40.0% | |
| !! | CTAGAGTTGGCTTTAATTGC+TGG | - | chr1_4:10201243-10201262 | Msa0149430:intron | 40.0% |
| !! | TTGGCTTTAATTGCTGGATC+TGG | - | chr1_4:10201249-10201268 | Msa0149430:intron | 40.0% |
| GTTGAAGTGTGAACTCATAG+TGG | - | chr1_4:10201367-10201386 | Msa0149430:intron | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | + | chr1_4:10201409-10201428 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | - | chr1_4:10201680-10201699 | Msa0149430:intron | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | + | chr1_4:10201732-10201751 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | - | chr1_4:10201817-10201836 | Msa0149430:intron | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | + | chr1_4:10201829-10201848 | None:intergenic | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | + | chr1_4:10202006-10202025 | None:intergenic | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | - | chr1_4:10202004-10202023 | Msa0149430:intron | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | + | chr1_4:10202044-10202063 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | + | chr1_4:10202390-10202409 | None:intergenic | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | + | chr1_4:10202653-10202672 | None:intergenic | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | + | chr1_4:10202654-10202673 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | - | chr1_4:10202652-10202671 | Msa0149430:intron | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | - | chr1_4:10202658-10202677 | Msa0149430:intron | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | + | chr1_4:10202674-10202693 | None:intergenic | 40.0% | |
| !! | AAGCGAACAACTTTTGAGTG+AGG | - | chr1_4:10202778-10202797 | Msa0149430:intron | 40.0% |
| GAGCAGGAATCTTGATTTCA+AGG | + | chr1_4:10202868-10202887 | None:intergenic | 40.0% | |
| !! | AGTTCAATGGATTGGATGCA+TGG | - | chr1_4:10202971-10202990 | Msa0149430:intron | 40.0% |
| CCGCGTTAAAATCAATTCCA+GGG | + | chr1_4:10203027-10203046 | None:intergenic | 40.0% | |
| !! | CCCTGGAATTGATTTTAACG+CGG | - | chr1_4:10203024-10203043 | Msa0149430:intron | 40.0% |
| ACCGCGTTAAAATCAATTCC+AGG | + | chr1_4:10203028-10203047 | None:intergenic | 40.0% | |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr1_4:10203055-10203074 | Msa0149430:intron | 40.0% |
| GTCTTATCTCTTCTCAACGT+GGG | + | chr1_4:10203197-10203216 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | + | chr1_4:10203198-10203217 | None:intergenic | 40.0% |
| CGTTGAGAAGAGATAAGACT+TGG | - | chr1_4:10203198-10203217 | Msa0149430:intron | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | - | chr1_4:10203495-10203514 | Msa0149430:intron | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | + | chr1_4:10203758-10203777 | None:intergenic | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | - | chr1_4:10203907-10203926 | Msa0149430:intron | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | + | chr1_4:10204059-10204078 | None:intergenic | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | + | chr1_4:10204262-10204281 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | - | chr1_4:10204308-10204327 | Msa0149430:intron | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | - | chr1_4:10204312-10204331 | Msa0149430:intron | 40.0% | |
| GCTACTAAGGAAAACTGCTT+AGG | + | chr1_4:10204582-10204601 | None:intergenic | 40.0% | |
| !! | AGAGGGTACCATTGAAGCAT+TGG | + | chr1_4:10200626-10200645 | None:intergenic | 45.0% |
| CAAGTGGAAACAGCTAGAGT+TGG | - | chr1_4:10201230-10201249 | Msa0149430:intron | 45.0% | |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | - | chr1_4:10201394-10201413 | Msa0149430:intron | 45.0% |
| ATCTAACTTCAAAGTGCGGC+TGG | + | chr1_4:10201623-10201642 | None:intergenic | 45.0% | |
| AGAAGCTGCATAAGCAACCT+AGG | - | chr1_4:10201712-10201731 | Msa0149430:intron | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | - | chr1_4:10201713-10201732 | Msa0149430:intron | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | - | chr1_4:10201872-10201891 | Msa0149430:intron | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | - | chr1_4:10201873-10201892 | Msa0149430:intron | 45.0% | |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | + | chr1_4:10201887-10201906 | None:intergenic | 45.0% |
| AGCTCTTCCTTTCCATGTCA+AGG | - | chr1_4:10201996-10202015 | Msa0149430:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | - | chr1_4:10202237-10202256 | Msa0149430:CDS | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | + | chr1_4:10202685-10202704 | None:intergenic | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | - | chr1_4:10202702-10202721 | Msa0149430:intron | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | - | chr1_4:10202703-10202722 | Msa0149430:intron | 45.0% | |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr1_4:10202736-10202755 | Msa0149430:intron | 45.0% |
| TTCTCGTCAATGTTCAGAGC+AGG | + | chr1_4:10202884-10202903 | None:intergenic | 45.0% | |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr1_4:10203386-10203405 | Msa0149430:intron | 45.0% |
| GGCAATGGTAACATGAGTGT+TGG | - | chr1_4:10203510-10203529 | Msa0149430:intron | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr1_4:10203541-10203560 | None:intergenic | 45.0% |
| GTGCAGTTGCTGAGAAGAAA+AGG | + | chr1_4:10203555-10203574 | None:intergenic | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | - | chr1_4:10203619-10203638 | Msa0149430:intron | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | + | chr1_4:10204272-10204291 | None:intergenic | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | + | chr1_4:10204355-10204374 | None:intergenic | 45.0% | |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr1_4:10204363-10204382 | None:intergenic | 45.0% |
| CCGTGGAAGATTTGCGAAAA+CGG | - | chr1_4:10204360-10204379 | Msa0149430:intron | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | - | chr1_4:10204363-10204382 | Msa0149430:intron | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | - | chr1_4:10204380-10204399 | Msa0149430:intron | 45.0% | |
| !!! | AACATATTAAATTTTTATAT+TGG | + | chr1_4:10203287-10203306 | None:intergenic | 5.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | - | chr1_4:10201399-10201418 | Msa0149430:intron | 50.0% |
| ATCCAACGACTGATCAGGTG+CGG | - | chr1_4:10201685-10201704 | Msa0149430:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | + | chr1_4:10201880-10201899 | None:intergenic | 50.0% |
| GAGCTGAGTAGTAGTGTCAC+AGG | + | chr1_4:10201981-10202000 | None:intergenic | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | + | chr1_4:10202380-10202399 | None:intergenic | 50.0% | |
| ACTGAGTAACGCGGATGAGT+TGG | + | chr1_4:10202381-10202400 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | - | chr1_4:10202698-10202717 | Msa0149430:intron | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | - | chr1_4:10202701-10202720 | Msa0149430:intron | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | + | chr1_4:10202705-10202724 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | + | chr1_4:10202998-10203017 | None:intergenic | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | + | chr1_4:10203010-10203029 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | - | chr1_4:10203007-10203026 | Msa0149430:intron | 50.0% | |
| ! | TTGGCCAATCCACTCTAGAG+AGG | - | chr1_4:10203529-10203548 | Msa0149430:intron | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr1_4:10203536-10203555 | None:intergenic | 50.0% |
| GACAGTCAACCAAGAATCCG+TGG | - | chr1_4:10204343-10204362 | Msa0149430:intron | 50.0% | |
| ! | AGCCTGGTAGTGCTATGTGA+TGG | - | chr1_4:10204487-10204506 | Msa0149430:intron | 50.0% |
| ! | GCCTGGTAGTGCTATGTGAT+GGG | - | chr1_4:10204488-10204507 | Msa0149430:intron | 50.0% |
| TCCCATCACATAGCACTACC+AGG | + | chr1_4:10204492-10204511 | None:intergenic | 50.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | + | chr1_4:10201618-10201637 | None:intergenic | 55.0% | |
| AACCGCACCTGATCAGTCGT+TGG | + | chr1_4:10201690-10201709 | None:intergenic | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | + | chr1_4:10202371-10202390 | None:intergenic | 55.0% |
| GTCCTCTTTAGCGCTGCACA+CGG | - | chr1_4:10203324-10203343 | Msa0149430:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | - | chr1_4:10203331-10203350 | Msa0149430:intron | 55.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | + | chr1_4:10202372-10202391 | None:intergenic | 60.0% |
| TGGGGAAGACATGTCGTCGC+AGG | - | chr1_4:10202721-10202740 | Msa0149430:intron | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | - | chr1_4:10202722-10202741 | Msa0149430:intron | 60.0% | |
| CACCGTGTGCAGCGCTAAAG+AGG | + | chr1_4:10203329-10203348 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 10200374 | 10204815 | 10200374 | ID=Msa0149430;Name=Msa0149430 |
| chr1_4 | mRNA | 10200374 | 10204815 | 10200374 | ID=Msa0149430-mRNA-1;Parent=Msa0149430;Name=Msa0149430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|0.5|0.6|1|0.25|0.4|5|407|258 |
| chr1_4 | exon | 10200374 | 10200870 | 10200374 | ID=Msa0149430-mRNA-1:exon:4350;Parent=Msa0149430-mRNA-1 |
| chr1_4 | exon | 10201539 | 10201685 | 10201539 | ID=Msa0149430-mRNA-1:exon:4349;Parent=Msa0149430-mRNA-1 |
| chr1_4 | exon | 10202144 | 10202389 | 10202144 | ID=Msa0149430-mRNA-1:exon:4348;Parent=Msa0149430-mRNA-1 |
| chr1_4 | exon | 10202420 | 10202608 | 10202420 | ID=Msa0149430-mRNA-1:exon:4347;Parent=Msa0149430-mRNA-1 |
| chr1_4 | exon | 10204553 | 10204815 | 10204553 | ID=Msa0149430-mRNA-1:exon:4346;Parent=Msa0149430-mRNA-1 |
| chr1_4 | five_prime_UTR | 10204658 | 10204815 | 10204658 | ID=Msa0149430-mRNA-1:five_prime_utr;Parent=Msa0149430-mRNA-1 |
| chr1_4 | CDS | 10204553 | 10204657 | 10204553 | ID=Msa0149430-mRNA-1:cds;Parent=Msa0149430-mRNA-1 |
| chr1_4 | CDS | 10202420 | 10202608 | 10202420 | ID=Msa0149430-mRNA-1:cds;Parent=Msa0149430-mRNA-1 |
| chr1_4 | CDS | 10202144 | 10202389 | 10202144 | ID=Msa0149430-mRNA-1:cds;Parent=Msa0149430-mRNA-1 |
| chr1_4 | CDS | 10201539 | 10201685 | 10201539 | ID=Msa0149430-mRNA-1:cds;Parent=Msa0149430-mRNA-1 |
| chr1_4 | CDS | 10200781 | 10200870 | 10200781 | ID=Msa0149430-mRNA-1:cds;Parent=Msa0149430-mRNA-1 |
| chr1_4 | three_prime_UTR | 10200374 | 10200780 | 10200374 | ID=Msa0149430-mRNA-1:three_prime_utr;Parent=Msa0149430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
