Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0008210 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008210 | Msa0030700 | 0.804219 | 2.399011e-49 | -8.615850e-47 |
| Msa0008210 | Msa0057380 | 0.989653 | 4.682359e-179 | -8.615850e-47 |
| Msa0008210 | Msa0078120 | 0.821228 | 4.514351e-53 | -8.615850e-47 |
| Msa0008210 | Msa0079070 | 0.800988 | 1.113271e-48 | -8.615850e-47 |
| Msa0008210 | Msa0149430 | 0.984062 | 1.756756e-159 | -8.615850e-47 |
| Msa0008210 | Msa0236420 | 0.817495 | 3.200799e-52 | -8.615850e-47 |
| Msa0008210 | Msa0241140 | 0.806888 | 6.608832e-50 | -8.615850e-47 |
| Msa0008210 | Msa0270960 | 0.816863 | 4.441895e-52 | -8.615850e-47 |
| Msa0008210 | Msa0278580 | 0.840106 | 1.061491e-57 | -8.615850e-47 |
| Msa0008210 | Msa0287870 | 0.812718 | 3.681539e-51 | -8.615850e-47 |
| Msa0008210 | Msa0309270 | 0.801621 | 8.257641e-49 | -8.615850e-47 |
| Msa0008210 | Msa0317960 | 0.826836 | 2.180281e-54 | -8.615850e-47 |
| Msa0008210 | Msa0388730 | 0.804213 | 2.406263e-49 | -8.615850e-47 |
| Msa0008210 | Msa0432160 | 0.814091 | 1.837938e-51 | -8.615850e-47 |
| Msa0008210 | Msa0476680 | 0.821356 | 4.218028e-53 | -8.615850e-47 |
| Msa0008210 | Msa0521010 | 0.818954 | 1.496905e-52 | -8.615850e-47 |
| Msa0008210 | Msa0600590 | 0.803937 | 2.745765e-49 | -8.615850e-47 |
| Msa0008210 | Msa0641130 | 0.801639 | 8.187645e-49 | -8.615850e-47 |
| Msa0008210 | Msa0689430 | 0.981185 | 5.593026e-152 | -8.615850e-47 |
| Msa0008210 | Msa0709270 | 0.814732 | 1.326184e-51 | -8.615850e-47 |
| Msa0008210 | Msa0733010 | 0.805348 | 1.393823e-49 | -8.615850e-47 |
| Msa0008210 | Msa0743930 | 0.818680 | 1.727124e-52 | -8.615850e-47 |
| Msa0008210 | Msa0784480 | 0.804518 | 2.078284e-49 | -8.615850e-47 |
| Msa0008210 | Msa0822500 | 0.800841 | 1.192813e-48 | -8.615850e-47 |
| Msa0008210 | Msa0855870 | 0.800044 | 1.733743e-48 | -8.615850e-47 |
| Msa0008210 | Msa0965080 | 0.807337 | 5.309666e-50 | -8.615850e-47 |
| Msa0008210 | Msa0965290 | 0.809920 | 1.490348e-50 | -8.615850e-47 |
| Msa0008210 | Msa0999680 | 0.811689 | 6.174777e-51 | -8.615850e-47 |
| Msa0008210 | Msa1048220 | 0.811400 | 7.134410e-51 | -8.615850e-47 |
| Msa0008210 | Msa1056240 | 0.801969 | 7.005112e-49 | -8.615850e-47 |
| Msa0008210 | Msa1089460 | 0.837375 | 5.394500e-57 | -8.615850e-47 |
| Msa0008210 | Msa1122150 | 0.810204 | 1.294513e-50 | -8.615850e-47 |
| Msa0008210 | Msa1160560 | 0.813742 | 2.194005e-51 | -8.615850e-47 |
| Msa0008210 | Msa1226460 | 0.823024 | 1.730757e-53 | -8.615850e-47 |
| Msa0008210 | Msa1238600 | 0.800695 | 1.277586e-48 | -8.615850e-47 |
| Msa0008210 | Msa1305810 | 0.803046 | 4.203095e-49 | -8.615850e-47 |
| Msa0008210 | Msa1346840 | 0.812083 | 5.067907e-51 | -8.615850e-47 |
| Msa0008210 | Msa1368360 | 0.804253 | 2.360204e-49 | -8.615850e-47 |
| Msa0008210 | Msa1369920 | -0.830184 | 3.387890e-55 | -8.615850e-47 |
| Msa0008210 | Msa1419840 | 0.816796 | 4.596261e-52 | -8.615850e-47 |
| Msa0008210 | Msa1442920 | 0.816910 | 4.334781e-52 | -8.615850e-47 |
| Msa0008210 | Msa1452710 | 0.804051 | 2.600266e-49 | -8.615850e-47 |
| Msa0008210 | Msa1458680 | 0.807447 | 5.031506e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008210 | MtrunA17_Chr1g0147111 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Msa0008210 | MtrunA17_Chr3g0126721 | 66.192 | 281 | 63 | 6 | 1 | 254 | 1 | 276 | 2.22e-114 | 329 |
| Msa0008210 | MtrunA17_Chr8g0387241 | 51.429 | 70 | 32 | 1 | 185 | 252 | 200 | 269 | 3.06e-17 | 79.7 |
| Msa0008210 | MtrunA17_Chr1g0168401 | 64.583 | 48 | 17 | 0 | 206 | 253 | 317 | 364 | 4.87e-16 | 77.0 |
| Msa0008210 | MtrunA17_Chr1g0186171 | 57.143 | 56 | 24 | 0 | 198 | 253 | 306 | 361 | 5.34e-16 | 77.0 |
| Msa0008210 | MtrunA17_Chr4g0030421 | 58.000 | 50 | 21 | 0 | 204 | 253 | 31 | 80 | 9.73e-16 | 72.0 |
| Msa0008210 | MtrunA17_Chr5g0397361 | 50.000 | 70 | 34 | 1 | 186 | 254 | 150 | 219 | 6.52e-15 | 72.4 |
| Msa0008210 | MtrunA17_Chr2g0327621 | 56.863 | 51 | 22 | 0 | 206 | 256 | 153 | 203 | 7.64e-15 | 72.0 |
| Msa0008210 | MtrunA17_Chr2g0311591 | 53.061 | 49 | 23 | 0 | 204 | 252 | 166 | 214 | 7.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008210 | AT4G27900.1 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0008210 | AT4G27900.2 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0008210 | AT5G53420.1 | 44.649 | 271 | 122 | 8 | 1 | 252 | 1 | 262 | 1.60e-69 | 215 |
| Msa0008210 | AT5G53420.2 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0008210 | AT5G53420.5 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0008210 | AT5G53420.4 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0008210 | AT5G53420.3 | 36.538 | 208 | 107 | 6 | 1 | 192 | 1 | 199 | 1.28e-33 | 121 |
| Msa0008210 | AT5G41380.1 | 55.932 | 59 | 26 | 0 | 195 | 253 | 202 | 260 | 6.91e-17 | 79.0 |
| Msa0008210 | AT1G04500.4 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0008210 | AT1G04500.1 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0008210 | AT1G04500.3 | 38.583 | 127 | 62 | 4 | 139 | 253 | 202 | 324 | 1.32e-16 | 79.0 |
| Msa0008210 | AT1G63820.1 | 62.000 | 50 | 19 | 0 | 204 | 253 | 188 | 237 | 1.51e-16 | 77.8 |
| Msa0008210 | AT2G33350.2 | 56.452 | 62 | 24 | 1 | 192 | 253 | 297 | 355 | 3.86e-16 | 77.8 |
| Msa0008210 | AT2G33350.1 | 56.452 | 62 | 24 | 1 | 192 | 253 | 298 | 356 | 3.98e-16 | 77.8 |
| Msa0008210 | AT2G33350.4 | 56.452 | 62 | 24 | 1 | 192 | 253 | 286 | 344 | 4.34e-16 | 77.4 |
| Msa0008210 | AT2G33350.5 | 64.000 | 50 | 18 | 0 | 204 | 253 | 315 | 364 | 4.51e-16 | 77.4 |
| Msa0008210 | AT5G59990.1 | 59.091 | 44 | 18 | 0 | 215 | 258 | 170 | 213 | 1.04e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAATTAATTCAGTTAA+AGG | 0.186554 | 1_1:-11849238 | None:intergenic |
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1_1:-11848429 | None:intergenic |
| TTTCTTTCTCTTACTACAAC+TGG | 0.317260 | 1_1:+11845257 | Msa0008210:five_prime_UTR |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1_1:+11847786 | Msa0008210:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1_1:-11849180 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1_1:-11847751 | None:intergenic |
| AGTACTAATGGCAATTTGTA+TGG | 0.364332 | 1_1:-11849630 | None:intergenic |
| GAATTATTTCTAACAATGAT+TGG | 0.365515 | 1_1:+11849578 | Msa0008210:three_prime_UTR |
| TGGGAAAATTATAGACTTGA+TGG | 0.366764 | 1_1:+11849335 | Msa0008210:three_prime_UTR |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1_1:+11847835 | Msa0008210:CDS |
| GCAATTTGTATGGATCAATA+TGG | 0.372128 | 1_1:-11849620 | None:intergenic |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1_1:+11849188 | Msa0008210:CDS |
| GTTTCAATGAGAAACATAAA+AGG | 0.384534 | 1_1:-11845299 | None:intergenic |
| GATTGTGAGGAAGGGGTTTG+AGG | 0.386629 | 1_1:-11845203 | None:intergenic |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1_1:+11848443 | Msa0008210:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1_1:+11849136 | Msa0008210:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1_1:-11847823 | None:intergenic |
| GACCTTCTAGATATGTATAT+AGG | 0.415169 | 1_1:+11849451 | Msa0008210:three_prime_UTR |
| CTACAAAGAAAAGGCTACTA+AGG | 0.418223 | 1_1:-11849420 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1_1:-11847853 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1_1:+11847791 | Msa0008210:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1_1:+11847769 | Msa0008210:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1_1:-11847693 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1_1:-11847757 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 1_1:-11845391 | None:intergenic |
| GTATGTAAAGATTGTGAGGA+AGG | 0.455281 | 1_1:-11845212 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1_1:+11848444 | Msa0008210:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1_1:-11848380 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1_1:-11847843 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1_1:+11847549 | Msa0008210:CDS |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 1_1:+11845447 | Msa0008210:CDS |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 1_1:-11845390 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1_1:-11847479 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1_1:+11847480 | Msa0008210:CDS |
| AACCTATATACATATCTAGA+AGG | 0.488206 | 1_1:-11849453 | None:intergenic |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1_1:-11847510 | None:intergenic |
| CATATCCATCTACAAAGAAA+AGG | 0.491733 | 1_1:-11849429 | None:intergenic |
| TATAACTTGAGCAGGTATCA+TGG | 0.496613 | 1_1:+11849363 | Msa0008210:three_prime_UTR |
| GCTACTAAGGAAAACTGCTT+AGG | 0.497063 | 1_1:-11849407 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1_1:+11847564 | Msa0008210:CDS |
| TGGAATTCTATAACTTGAGC+AGG | 0.500490 | 1_1:+11849355 | Msa0008210:three_prime_UTR |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 1_1:-11845455 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1_1:+11848317 | Msa0008210:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1_1:+11847438 | Msa0008210:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1_1:-11847709 | None:intergenic |
| TCCCATCACATAGCACTACC+AGG | 0.529438 | 1_1:-11849317 | None:intergenic |
| ATGTAAAGATTGTGAGGAAG+GGG | 0.535767 | 1_1:-11845210 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1_1:-11847499 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1_1:-11847835 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1_1:+11847439 | Msa0008210:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1_1:+11847799 | Msa0008210:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1_1:-11847679 | None:intergenic |
| GTTTGATGAATAATAAAAGA+AGG | 0.543872 | 1_1:+11849473 | Msa0008210:three_prime_UTR |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1_1:+11847526 | Msa0008210:CDS |
| TATGTAAAGATTGTGAGGAA+GGG | 0.546950 | 1_1:-11845211 | None:intergenic |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1_1:+11847486 | Msa0008210:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1_1:-11847478 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1_1:-11847852 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1_1:-11848361 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1_1:+11848457 | Msa0008210:CDS |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1_1:+11847550 | Msa0008210:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1_1:-11848366 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1_1:+11849208 | Msa0008210:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1_1:+11847530 | Msa0008210:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1_1:+11849140 | Msa0008210:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1_1:+11848323 | Msa0008210:intron |
| GCCTGGTAGTGCTATGTGAT+GGG | 0.609531 | 1_1:+11849316 | Msa0008210:three_prime_UTR |
| AGCCTGGTAGTGCTATGTGA+TGG | 0.609985 | 1_1:+11849315 | Msa0008210:three_prime_UTR |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1_1:+11849171 | Msa0008210:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1_1:+11848338 | Msa0008210:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 1_1:-11847530 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1_1:+11847529 | Msa0008210:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1_1:+11848432 | Msa0008210:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1_1:-11847665 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1_1:+11848357 | Msa0008210:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1_1:+11849191 | Msa0008210:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 1_1:-11847414 | None:intergenic |
| GTATGTATGTAAAGATTGTG+AGG | 0.669763 | 1_1:-11845216 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1_1:+11847531 | Msa0008210:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1_1:+11848447 | Msa0008210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTCTTCAATTTTA+TGG | + | chr1_1:11846175-11846194 | Msa0008210:intron | 10.0% |
| !! | ATACAATACTAATATTTAAA+AGG | + | chr1_1:11847275-11847294 | Msa0008210:intron | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | + | chr1_1:11847955-11847974 | Msa0008210:intron | 10.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | - | chr1_1:11845505-11845524 | None:intergenic | 15.0% |
| !!! | ATATTTCTTAATAGTTTTCT+AGG | + | chr1_1:11845680-11845699 | Msa0008210:intron | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | + | chr1_1:11845844-11845863 | Msa0008210:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | + | chr1_1:11845900-11845919 | Msa0008210:intron | 15.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | + | chr1_1:11845974-11845993 | Msa0008210:intron | 15.0% |
| !! | AATATTATTACCAAGAAAAA+GGG | - | chr1_1:11846287-11846306 | None:intergenic | 15.0% |
| !! | TAAATATATAGTTACAAAAG+AGG | + | chr1_1:11846363-11846382 | Msa0008210:intron | 15.0% |
| !! | TTGAAGTTAGATTAATTTAA+CGG | + | chr1_1:11846462-11846481 | Msa0008210:intron | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | + | chr1_1:11847308-11847327 | Msa0008210:intron | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | + | chr1_1:11847986-11848005 | Msa0008210:intron | 15.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | - | chr1_1:11845744-11845763 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | + | chr1_1:11845809-11845828 | Msa0008210:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | - | chr1_1:11846169-11846188 | None:intergenic | 20.0% |
| !! | CAATATTATTACCAAGAAAA+AGG | - | chr1_1:11846288-11846307 | None:intergenic | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | + | chr1_1:11846291-11846310 | Msa0008210:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | + | chr1_1:11846325-11846344 | Msa0008210:intron | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | - | chr1_1:11846596-11846615 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | + | chr1_1:11846607-11846626 | Msa0008210:intron | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | + | chr1_1:11846730-11846749 | Msa0008210:intron | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | + | chr1_1:11847241-11847260 | Msa0008210:intron | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | + | chr1_1:11847438-11847457 | Msa0008210:CDS | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | + | chr1_1:11847439-11847458 | Msa0008210:CDS | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | - | chr1_1:11847981-11848000 | None:intergenic | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | - | chr1_1:11848109-11848128 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | - | chr1_1:11848234-11848253 | None:intergenic | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | + | chr1_1:11848558-11848577 | Msa0008210:intron | 20.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | - | chr1_1:11848829-11848848 | None:intergenic | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | - | chr1_1:11849114-11849133 | None:intergenic | 20.0% |
| !! | TCTTCAATTAATTCAGTTAA+AGG | - | chr1_1:11849241-11849260 | None:intergenic | 20.0% |
| !! | GTTTGATGAATAATAAAAGA+AGG | + | chr1_1:11849473-11849492 | Msa0008210:three_prime_UTR | 20.0% |
| !!! | GAATTATTTCTAACAATGAT+TGG | + | chr1_1:11849578-11849597 | Msa0008210:three_prime_UTR | 20.0% |
| ! | GTTTCAATGAGAAACATAAA+AGG | - | chr1_1:11845302-11845321 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | - | chr1_1:11845475-11845494 | None:intergenic | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | + | chr1_1:11846119-11846138 | Msa0008210:intron | 25.0% |
| !! | TCATATTATTCCCTTTTTCT+TGG | + | chr1_1:11846274-11846293 | Msa0008210:intron | 25.0% |
| ! | ATTAATCTAACTTCAAAGTG+CGG | - | chr1_1:11846458-11846477 | None:intergenic | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | + | chr1_1:11846729-11846748 | Msa0008210:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | - | chr1_1:11846792-11846811 | None:intergenic | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | + | chr1_1:11846991-11847010 | Msa0008210:intron | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | + | chr1_1:11847104-11847123 | Msa0008210:intron | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | - | chr1_1:11847130-11847149 | None:intergenic | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | + | chr1_1:11847642-11847661 | Msa0008210:CDS | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | + | chr1_1:11847894-11847913 | Msa0008210:intron | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | + | chr1_1:11847906-11847925 | Msa0008210:intron | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | - | chr1_1:11848081-11848100 | None:intergenic | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | + | chr1_1:11848208-11848227 | Msa0008210:intron | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | - | chr1_1:11848280-11848299 | None:intergenic | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | + | chr1_1:11848281-11848300 | Msa0008210:intron | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | - | chr1_1:11848288-11848307 | None:intergenic | 25.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | - | chr1_1:11848533-11848552 | None:intergenic | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | + | chr1_1:11848564-11848583 | Msa0008210:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | + | chr1_1:11849118-11849137 | Msa0008210:intron | 25.0% |
| ! | AACCTATATACATATCTAGA+AGG | - | chr1_1:11849456-11849475 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAAAAAAAAGAG+AGG | + | chr1_1:11849488-11849507 | Msa0008210:three_prime_UTR | 25.0% |
| TATGTAAAGATTGTGAGGAA+GGG | - | chr1_1:11845214-11845233 | None:intergenic | 30.0% | |
| GTATGTATGTAAAGATTGTG+AGG | - | chr1_1:11845219-11845238 | None:intergenic | 30.0% | |
| TTTCTTTCTCTTACTACAAC+TGG | + | chr1_1:11845257-11845276 | Msa0008210:five_prime_UTR | 30.0% | |
| ! | AAACATTTTTGTTAGCTGAG+AGG | - | chr1_1:11845350-11845369 | None:intergenic | 30.0% |
| ACAAAAATGTTTGCAGAAAC+TGG | + | chr1_1:11845358-11845377 | Msa0008210:exon | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | - | chr1_1:11845393-11845412 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | - | chr1_1:11845394-11845413 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | - | chr1_1:11845476-11845495 | None:intergenic | 30.0% | |
| !! | ATCTGGAAAAGTGTTACAAA+AGG | + | chr1_1:11846098-11846117 | Msa0008210:intron | 30.0% |
| !!! | GTAATCATGCTTGCTATTTT+TGG | + | chr1_1:11846385-11846404 | Msa0008210:intron | 30.0% |
| ! | AACTTTTCGTACAAGCAAAA+TGG | - | chr1_1:11846572-11846591 | None:intergenic | 30.0% |
| TATTACTCAGCTCAAGAATA+TGG | - | chr1_1:11846635-11846654 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | + | chr1_1:11846740-11846759 | Msa0008210:intron | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | + | chr1_1:11846741-11846760 | Msa0008210:intron | 30.0% |
| TAACTACTGCAGAAAATTCT+CGG | - | chr1_1:11846936-11846955 | None:intergenic | 30.0% | |
| CTTTCTCTCTCTTTGTAAAA+TGG | + | chr1_1:11847044-11847063 | Msa0008210:intron | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | - | chr1_1:11847081-11847100 | None:intergenic | 30.0% | |
| ! | GTTTTCACTTTAACTGTGTA+AGG | + | chr1_1:11847170-11847189 | Msa0008210:intron | 30.0% |
| AATGACAAAAGACATACTAG+GGG | - | chr1_1:11847346-11847365 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | - | chr1_1:11847347-11847366 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | - | chr1_1:11847348-11847367 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | - | chr1_1:11847682-11847701 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | - | chr1_1:11847754-11847773 | None:intergenic | 30.0% | |
| ! | CTCTTTGATAATAGTACATC+AGG | - | chr1_1:11847760-11847779 | None:intergenic | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | + | chr1_1:11847786-11847805 | Msa0008210:CDS | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | + | chr1_1:11847791-11847810 | Msa0008210:CDS | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | + | chr1_1:11847859-11847878 | Msa0008210:intron | 30.0% |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | - | chr1_1:11848075-11848094 | None:intergenic | 30.0% |
| TATGTTGATGTATCTAGACT+CGG | + | chr1_1:11848129-11848148 | Msa0008210:intron | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | + | chr1_1:11848317-11848336 | Msa0008210:intron | 30.0% | |
| AAGAAAAACTCTCCAGATAT+AGG | + | chr1_1:11848417-11848436 | Msa0008210:CDS | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | - | chr1_1:11848432-11848451 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | + | chr1_1:11848432-11848451 | Msa0008210:CDS | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | - | chr1_1:11848490-11848509 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | - | chr1_1:11848704-11848723 | None:intergenic | 30.0% | |
| ! | GGAGTATTAGTATTTGCAAA+TGG | - | chr1_1:11848765-11848784 | None:intergenic | 30.0% |
| TTTGCAAATACTAATACTCC+TGG | + | chr1_1:11848765-11848784 | Msa0008210:intron | 30.0% | |
| TCAACATTATACTTCATACC+AGG | - | chr1_1:11848786-11848805 | None:intergenic | 30.0% | |
| ! | AATCATTGCTTCAACTTTTG+AGG | + | chr1_1:11848916-11848935 | Msa0008210:intron | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | - | chr1_1:11849019-11849038 | None:intergenic | 30.0% |
| TGCATCAGATCAAAAAAAGA+TGG | + | chr1_1:11849289-11849308 | Msa0008210:three_prime_UTR | 30.0% | |
| TGGGAAAATTATAGACTTGA+TGG | + | chr1_1:11849335-11849354 | Msa0008210:three_prime_UTR | 30.0% | |
| CATATCCATCTACAAAGAAA+AGG | - | chr1_1:11849432-11849451 | None:intergenic | 30.0% | |
| GACCTTCTAGATATGTATAT+AGG | + | chr1_1:11849451-11849470 | Msa0008210:three_prime_UTR | 30.0% | |
| AGGAAAAAAAAAGAGAGGTA+AGG | + | chr1_1:11849493-11849512 | Msa0008210:three_prime_UTR | 30.0% | |
| GCAATTTGTATGGATCAATA+TGG | - | chr1_1:11849623-11849642 | None:intergenic | 30.0% | |
| ATGTAAAGATTGTGAGGAAG+GGG | - | chr1_1:11845213-11845232 | None:intergenic | 35.0% | |
| GTATGTAAAGATTGTGAGGA+AGG | - | chr1_1:11845215-11845234 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | + | chr1_1:11845447-11845466 | Msa0008210:CDS | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | - | chr1_1:11845586-11845605 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | + | chr1_1:11845585-11845604 | Msa0008210:intron | 35.0% | |
| TCAATAAACCTCTCCTTAGT+GGG | - | chr1_1:11846242-11846261 | None:intergenic | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | - | chr1_1:11846243-11846262 | None:intergenic | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | + | chr1_1:11846245-11846264 | Msa0008210:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | - | chr1_1:11846666-11846685 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | - | chr1_1:11846799-11846818 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | - | chr1_1:11846842-11846861 | None:intergenic | 35.0% | |
| ! | GAATGATACCGAGTTTTCAT+AGG | - | chr1_1:11847002-11847021 | None:intergenic | 35.0% |
| CTCTCTTTGTAAAATGGTTG+AGG | + | chr1_1:11847050-11847069 | Msa0008210:intron | 35.0% | |
| ! | TGGCCTTAACAATTACTTGA+TGG | + | chr1_1:11847124-11847143 | Msa0008210:intron | 35.0% |
| CTCTGCATTAAAACACAGTA+AGG | - | chr1_1:11847391-11847410 | None:intergenic | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | - | chr1_1:11847417-11847436 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | - | chr1_1:11847668-11847687 | None:intergenic | 35.0% | |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | + | chr1_1:11847769-11847788 | Msa0008210:CDS | 35.0% |
| AATCAATTCCAGGGAAATCA+AGG | - | chr1_1:11847846-11847865 | None:intergenic | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | - | chr1_1:11848074-11848093 | None:intergenic | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | - | chr1_1:11848076-11848095 | None:intergenic | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | + | chr1_1:11848088-11848107 | Msa0008210:intron | 35.0% |
| ATGTTGATGTATCTAGACTC+GGG | + | chr1_1:11848130-11848149 | Msa0008210:intron | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | + | chr1_1:11848443-11848462 | Msa0008210:CDS | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | + | chr1_1:11848444-11848463 | Msa0008210:CDS | 35.0% | |
| ! | AAACTTTGGGAGGAAAATCA+AGG | + | chr1_1:11848457-11848476 | Msa0008210:CDS | 35.0% |
| TACTTGCTTCTCTTACATCA+GGG | - | chr1_1:11848593-11848612 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | - | chr1_1:11848594-11848613 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | - | chr1_1:11848640-11848659 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | + | chr1_1:11848642-11848661 | Msa0008210:intron | 35.0% | |
| ! | AACAAACTCGTCCATTGATT+TGG | + | chr1_1:11848690-11848709 | Msa0008210:intron | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | + | chr1_1:11848709-11848728 | Msa0008210:intron | 35.0% |
| TGCATAATGCAGTTATTGCA+GGG | + | chr1_1:11848736-11848755 | Msa0008210:intron | 35.0% | |
| AAAAAACTGCATCAGTAGCA+AGG | + | chr1_1:11848987-11849006 | Msa0008210:intron | 35.0% | |
| ! | TTAAAAGCATGCAAGGGATT+AGG | - | chr1_1:11849013-11849032 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | - | chr1_1:11849020-11849039 | None:intergenic | 35.0% |
| CAAAAAAAGATGGAAAAGCC+TGG | + | chr1_1:11849299-11849318 | Msa0008210:three_prime_UTR | 35.0% | |
| TGGAATTCTATAACTTGAGC+AGG | + | chr1_1:11849355-11849374 | Msa0008210:three_prime_UTR | 35.0% | |
| TATAACTTGAGCAGGTATCA+TGG | + | chr1_1:11849363-11849382 | Msa0008210:three_prime_UTR | 35.0% | |
| ! | AAAACTGCTTAGGAGTTTTG+AGG | - | chr1_1:11849400-11849419 | None:intergenic | 35.0% |
| CTACAAAGAAAAGGCTACTA+AGG | - | chr1_1:11849423-11849442 | None:intergenic | 35.0% | |
| ! | AGTAGCCTTTTCTTTGTAGA+TGG | + | chr1_1:11849424-11849443 | Msa0008210:three_prime_UTR | 35.0% |
| AGTCATACTCAAAGCACAAG+TGG | + | chr1_1:11846046-11846065 | Msa0008210:intron | 40.0% | |
| !! | CTAGAGTTGGCTTTAATTGC+TGG | + | chr1_1:11846075-11846094 | Msa0008210:intron | 40.0% |
| !! | TTGGCTTTAATTGCTGGATC+TGG | + | chr1_1:11846081-11846100 | Msa0008210:intron | 40.0% |
| GTTGAAGTGTGAACTCATAG+TGG | + | chr1_1:11846199-11846218 | Msa0008210:intron | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | - | chr1_1:11846241-11846260 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | + | chr1_1:11846511-11846530 | Msa0008210:intron | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | - | chr1_1:11846563-11846582 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | + | chr1_1:11846648-11846667 | Msa0008210:intron | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | - | chr1_1:11846660-11846679 | None:intergenic | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | - | chr1_1:11846837-11846856 | None:intergenic | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | + | chr1_1:11846835-11846854 | Msa0008210:intron | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | - | chr1_1:11846875-11846894 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | - | chr1_1:11847218-11847237 | None:intergenic | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | - | chr1_1:11847481-11847500 | None:intergenic | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | - | chr1_1:11847482-11847501 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | + | chr1_1:11847480-11847499 | Msa0008210:CDS | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | + | chr1_1:11847486-11847505 | Msa0008210:CDS | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | - | chr1_1:11847502-11847521 | None:intergenic | 40.0% | |
| !! | AAGCGAACAACTTTTGAGTG+AGG | + | chr1_1:11847606-11847625 | Msa0008210:intron | 40.0% |
| GAGCAGGAATCTTGATTTCA+AGG | - | chr1_1:11847696-11847715 | None:intergenic | 40.0% | |
| !! | AGTTCAATGGATTGGATGCA+TGG | + | chr1_1:11847799-11847818 | Msa0008210:CDS | 40.0% |
| CCGCGTTAAAATCAATTCCA+GGG | - | chr1_1:11847855-11847874 | None:intergenic | 40.0% | |
| !! | CCCTGGAATTGATTTTAACG+CGG | + | chr1_1:11847852-11847871 | Msa0008210:CDS | 40.0% |
| ACCGCGTTAAAATCAATTCC+AGG | - | chr1_1:11847856-11847875 | None:intergenic | 40.0% | |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | + | chr1_1:11847883-11847902 | Msa0008210:intron | 40.0% |
| GTCTTATCTCTTCTCAACGT+GGG | - | chr1_1:11848025-11848044 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | - | chr1_1:11848026-11848045 | None:intergenic | 40.0% |
| CGTTGAGAAGAGATAAGACT+TGG | + | chr1_1:11848026-11848045 | Msa0008210:intron | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | + | chr1_1:11848323-11848342 | Msa0008210:intron | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | - | chr1_1:11848586-11848605 | None:intergenic | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | + | chr1_1:11848735-11848754 | Msa0008210:intron | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | - | chr1_1:11848887-11848906 | None:intergenic | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | - | chr1_1:11849090-11849109 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | + | chr1_1:11849136-11849155 | Msa0008210:intron | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | + | chr1_1:11849140-11849159 | Msa0008210:intron | 40.0% | |
| GCTACTAAGGAAAACTGCTT+AGG | - | chr1_1:11849410-11849429 | None:intergenic | 40.0% | |
| !! | AGAGGGTACCATTGAAGCAT+TGG | - | chr1_1:11845458-11845477 | None:intergenic | 45.0% |
| CAAGTGGAAACAGCTAGAGT+TGG | + | chr1_1:11846062-11846081 | Msa0008210:intron | 45.0% | |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | + | chr1_1:11846226-11846245 | Msa0008210:intron | 45.0% |
| ATCTAACTTCAAAGTGCGGC+TGG | - | chr1_1:11846454-11846473 | None:intergenic | 45.0% | |
| AGAAGCTGCATAAGCAACCT+AGG | + | chr1_1:11846543-11846562 | Msa0008210:intron | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | + | chr1_1:11846544-11846563 | Msa0008210:intron | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | + | chr1_1:11846703-11846722 | Msa0008210:intron | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | + | chr1_1:11846704-11846723 | Msa0008210:intron | 45.0% | |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | - | chr1_1:11846718-11846737 | None:intergenic | 45.0% |
| AGCTCTTCCTTTCCATGTCA+AGG | + | chr1_1:11846827-11846846 | Msa0008210:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | + | chr1_1:11847065-11847084 | Msa0008210:intron | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | - | chr1_1:11847513-11847532 | None:intergenic | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | + | chr1_1:11847530-11847549 | Msa0008210:CDS | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | + | chr1_1:11847531-11847550 | Msa0008210:CDS | 45.0% | |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | + | chr1_1:11847564-11847583 | Msa0008210:CDS | 45.0% |
| TTCTCGTCAATGTTCAGAGC+AGG | - | chr1_1:11847712-11847731 | None:intergenic | 45.0% | |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | + | chr1_1:11848214-11848233 | Msa0008210:intron | 45.0% |
| GGCAATGGTAACATGAGTGT+TGG | + | chr1_1:11848338-11848357 | Msa0008210:CDS | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | - | chr1_1:11848369-11848388 | None:intergenic | 45.0% |
| GTGCAGTTGCTGAGAAGAAA+AGG | - | chr1_1:11848383-11848402 | None:intergenic | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | + | chr1_1:11848447-11848466 | Msa0008210:CDS | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | - | chr1_1:11849100-11849119 | None:intergenic | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | - | chr1_1:11849183-11849202 | None:intergenic | 45.0% | |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | - | chr1_1:11849191-11849210 | None:intergenic | 45.0% |
| CCGTGGAAGATTTGCGAAAA+CGG | + | chr1_1:11849188-11849207 | Msa0008210:CDS | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | + | chr1_1:11849191-11849210 | Msa0008210:CDS | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | + | chr1_1:11849208-11849227 | Msa0008210:CDS | 45.0% | |
| !!! | AACATATTAAATTTTTATAT+TGG | - | chr1_1:11848115-11848134 | None:intergenic | 5.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | + | chr1_1:11846231-11846250 | Msa0008210:intron | 50.0% |
| ATCCAACGACTGATCAGGTG+CGG | + | chr1_1:11846516-11846535 | Msa0008210:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | - | chr1_1:11846711-11846730 | None:intergenic | 50.0% |
| GAGCTGAGTAGTAGTGTCAC+AGG | - | chr1_1:11846812-11846831 | None:intergenic | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | - | chr1_1:11847208-11847227 | None:intergenic | 50.0% | |
| ACTGAGTAACGCGGATGAGT+TGG | - | chr1_1:11847209-11847228 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | + | chr1_1:11847526-11847545 | Msa0008210:CDS | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | + | chr1_1:11847529-11847548 | Msa0008210:CDS | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | - | chr1_1:11847533-11847552 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | - | chr1_1:11847826-11847845 | None:intergenic | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | - | chr1_1:11847838-11847857 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | + | chr1_1:11847835-11847854 | Msa0008210:CDS | 50.0% | |
| ! | TTGGCCAATCCACTCTAGAG+AGG | + | chr1_1:11848357-11848376 | Msa0008210:CDS | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | - | chr1_1:11848364-11848383 | None:intergenic | 50.0% |
| GACAGTCAACCAAGAATCCG+TGG | + | chr1_1:11849171-11849190 | Msa0008210:CDS | 50.0% | |
| ! | AGCCTGGTAGTGCTATGTGA+TGG | + | chr1_1:11849315-11849334 | Msa0008210:three_prime_UTR | 50.0% |
| ! | GCCTGGTAGTGCTATGTGAT+GGG | + | chr1_1:11849316-11849335 | Msa0008210:three_prime_UTR | 50.0% |
| TCCCATCACATAGCACTACC+AGG | - | chr1_1:11849320-11849339 | None:intergenic | 50.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | - | chr1_1:11846449-11846468 | None:intergenic | 55.0% | |
| AACCGCACCTGATCAGTCGT+TGG | - | chr1_1:11846521-11846540 | None:intergenic | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | - | chr1_1:11847199-11847218 | None:intergenic | 55.0% |
| GTCCTCTTTAGCGCTGCACA+CGG | + | chr1_1:11848152-11848171 | Msa0008210:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | + | chr1_1:11848159-11848178 | Msa0008210:intron | 55.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | - | chr1_1:11847200-11847219 | None:intergenic | 60.0% |
| TGGGGAAGACATGTCGTCGC+AGG | + | chr1_1:11847549-11847568 | Msa0008210:CDS | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | + | chr1_1:11847550-11847569 | Msa0008210:CDS | 60.0% | |
| CACCGTGTGCAGCGCTAAAG+AGG | - | chr1_1:11848157-11848176 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11845206 | 11849643 | 11845206 | ID=Msa0008210;Name=Msa0008210 |
| chr1_1 | mRNA | 11845206 | 11849643 | 11845206 | ID=Msa0008210-mRNA-1;Parent=Msa0008210;Name=Msa0008210-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|0.5|0.6|1|0.5|0.4|5|407|258 |
| chr1_1 | exon | 11845206 | 11845468 | 11845206 | ID=Msa0008210-mRNA-1:exon:4404;Parent=Msa0008210-mRNA-1 |
| chr1_1 | exon | 11847409 | 11847597 | 11847409 | ID=Msa0008210-mRNA-1:exon:4405;Parent=Msa0008210-mRNA-1 |
| chr1_1 | exon | 11847628 | 11847873 | 11847628 | ID=Msa0008210-mRNA-1:exon:4406;Parent=Msa0008210-mRNA-1 |
| chr1_1 | exon | 11848332 | 11848478 | 11848332 | ID=Msa0008210-mRNA-1:exon:4407;Parent=Msa0008210-mRNA-1 |
| chr1_1 | exon | 11849147 | 11849643 | 11849147 | ID=Msa0008210-mRNA-1:exon:4408;Parent=Msa0008210-mRNA-1 |
| chr1_1 | five_prime_UTR | 11845206 | 11845363 | 11845206 | ID=Msa0008210-mRNA-1:five_prime_utr;Parent=Msa0008210-mRNA-1 |
| chr1_1 | CDS | 11845364 | 11845468 | 11845364 | ID=Msa0008210-mRNA-1:cds;Parent=Msa0008210-mRNA-1 |
| chr1_1 | CDS | 11847409 | 11847597 | 11847409 | ID=Msa0008210-mRNA-1:cds;Parent=Msa0008210-mRNA-1 |
| chr1_1 | CDS | 11847628 | 11847873 | 11847628 | ID=Msa0008210-mRNA-1:cds;Parent=Msa0008210-mRNA-1 |
| chr1_1 | CDS | 11848332 | 11848478 | 11848332 | ID=Msa0008210-mRNA-1:cds;Parent=Msa0008210-mRNA-1 |
| chr1_1 | CDS | 11849147 | 11849236 | 11849147 | ID=Msa0008210-mRNA-1:cds;Parent=Msa0008210-mRNA-1 |
| chr1_1 | three_prime_UTR | 11849237 | 11849643 | 11849237 | ID=Msa0008210-mRNA-1:three_prime_utr;Parent=Msa0008210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
