Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689430 | XP_003588527.1 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689430 | G7I4B0 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0689430 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008210 | Msa0689430 | 0.981185 | 5.593026e-152 | -8.615850e-47 |
| Msa0057380 | Msa0689430 | 0.986883 | 2.664322e-168 | -8.615850e-47 |
| Msa0078120 | Msa0689430 | 0.817591 | 3.046111e-52 | -8.615850e-47 |
| Msa0624060 | Msa0689430 | 0.802899 | 4.506504e-49 | -8.615850e-47 |
| Msa0641130 | Msa0689430 | 0.803624 | 3.189717e-49 | -8.615850e-47 |
| Msa0676180 | Msa0689430 | 0.800161 | 1.641035e-48 | -8.615850e-47 |
| Msa0689430 | Msa0709270 | 0.800133 | 1.662692e-48 | -8.615850e-47 |
| Msa0689430 | Msa0733010 | 0.802680 | 5.001349e-49 | -8.615850e-47 |
| Msa0689430 | Msa0965080 | 0.802889 | 4.528156e-49 | -8.615850e-47 |
| Msa0689430 | Msa0965290 | 0.810132 | 1.341677e-50 | -8.615850e-47 |
| Msa0689430 | Msa0999680 | 0.810943 | 8.964117e-51 | -8.615850e-47 |
| Msa0689430 | Msa1048220 | 0.802826 | 4.665826e-49 | -8.615850e-47 |
| Msa0689430 | Msa1089460 | 0.836250 | 1.044936e-56 | -8.615850e-47 |
| Msa0689430 | Msa1122150 | 0.825517 | 4.490333e-54 | -8.615850e-47 |
| Msa0689430 | Msa1160560 | 0.824299 | 8.703069e-54 | -8.615850e-47 |
| Msa0689430 | Msa1226460 | 0.808090 | 3.673361e-50 | -8.615850e-47 |
| Msa0689430 | Msa1305810 | 0.801311 | 9.560274e-49 | -8.615850e-47 |
| Msa0689430 | Msa1342380 | 0.800842 | 1.191978e-48 | -8.615850e-47 |
| Msa0689430 | Msa1346840 | 0.815543 | 8.760358e-52 | -8.615850e-47 |
| Msa0689430 | Msa1368360 | 0.810869 | 9.300518e-51 | -8.615850e-47 |
| Msa0689430 | Msa1369920 | -0.833535 | 5.044971e-56 | -8.615850e-47 |
| Msa0689430 | Msa1378410 | 0.802602 | 5.190343e-49 | -8.615850e-47 |
| Msa0689430 | Msa1393570 | 0.808137 | 3.589751e-50 | -8.615850e-47 |
| Msa0689430 | Msa1419840 | 0.828810 | 7.307718e-55 | -8.615850e-47 |
| Msa0689430 | Msa1442920 | 0.813692 | 2.251092e-51 | -8.615850e-47 |
| Msa0689430 | Msa1452710 | 0.807761 | 4.317003e-50 | -8.615850e-47 |
| Msa0689430 | Msa1458680 | 0.802137 | 6.470245e-49 | -8.615850e-47 |
| Msa0149430 | Msa0689430 | 0.996448 | 1.174051e-227 | -8.615850e-47 |
| Msa0236420 | Msa0689430 | 0.813300 | 2.744868e-51 | -8.615850e-47 |
| Msa0388730 | Msa0689430 | 0.809791 | 1.589025e-50 | -8.615850e-47 |
| Msa0432160 | Msa0689430 | 0.811723 | 6.070266e-51 | -8.615850e-47 |
| Msa0476680 | Msa0689430 | 0.817772 | 2.772288e-52 | -8.615850e-47 |
| Msa0270960 | Msa0689430 | 0.813624 | 2.330036e-51 | -8.615850e-47 |
| Msa0278580 | Msa0689430 | 0.838139 | 3.432976e-57 | -8.615850e-47 |
| Msa0287870 | Msa0689430 | 0.806438 | 8.225009e-50 | -8.615850e-47 |
| Msa0309270 | Msa0689430 | 0.802181 | 6.335780e-49 | -8.615850e-47 |
| Msa0317960 | Msa0689430 | 0.828223 | 1.013100e-54 | -8.615850e-47 |
| Msa0363790 | Msa0689430 | 0.801354 | 9.369197e-49 | -8.615850e-47 |
| Msa0521010 | Msa0689430 | 0.815967 | 7.045434e-52 | -8.615850e-47 |
| Msa0545050 | Msa0689430 | 0.800328 | 1.517713e-48 | -8.615850e-47 |
| Msa0600590 | Msa0689430 | 0.808037 | 3.770109e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689430 | MtrunA17_Chr1g0147111 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Msa0689430 | MtrunA17_Chr3g0126721 | 66.192 | 281 | 63 | 6 | 1 | 254 | 1 | 276 | 2.22e-114 | 329 |
| Msa0689430 | MtrunA17_Chr8g0387241 | 51.429 | 70 | 32 | 1 | 185 | 252 | 200 | 269 | 3.06e-17 | 79.7 |
| Msa0689430 | MtrunA17_Chr1g0168401 | 64.583 | 48 | 17 | 0 | 206 | 253 | 317 | 364 | 4.87e-16 | 77.0 |
| Msa0689430 | MtrunA17_Chr1g0186171 | 57.143 | 56 | 24 | 0 | 198 | 253 | 306 | 361 | 5.34e-16 | 77.0 |
| Msa0689430 | MtrunA17_Chr4g0030421 | 58.000 | 50 | 21 | 0 | 204 | 253 | 31 | 80 | 9.73e-16 | 72.0 |
| Msa0689430 | MtrunA17_Chr5g0397361 | 50.000 | 70 | 34 | 1 | 186 | 254 | 150 | 219 | 6.52e-15 | 72.4 |
| Msa0689430 | MtrunA17_Chr2g0327621 | 56.863 | 51 | 22 | 0 | 206 | 256 | 153 | 203 | 7.64e-15 | 72.0 |
| Msa0689430 | MtrunA17_Chr2g0311591 | 53.061 | 49 | 23 | 0 | 204 | 252 | 166 | 214 | 7.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0689430 | AT4G27900.1 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0689430 | AT4G27900.2 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0689430 | AT5G53420.1 | 44.649 | 271 | 122 | 8 | 1 | 252 | 1 | 262 | 1.60e-69 | 215 |
| Msa0689430 | AT5G53420.2 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0689430 | AT5G53420.5 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0689430 | AT5G53420.4 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0689430 | AT5G53420.3 | 36.538 | 208 | 107 | 6 | 1 | 192 | 1 | 199 | 1.28e-33 | 121 |
| Msa0689430 | AT5G41380.1 | 55.932 | 59 | 26 | 0 | 195 | 253 | 202 | 260 | 6.91e-17 | 79.0 |
| Msa0689430 | AT1G04500.4 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0689430 | AT1G04500.1 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0689430 | AT1G04500.3 | 38.583 | 127 | 62 | 4 | 139 | 253 | 202 | 324 | 1.32e-16 | 79.0 |
| Msa0689430 | AT1G63820.1 | 62.000 | 50 | 19 | 0 | 204 | 253 | 188 | 237 | 1.51e-16 | 77.8 |
| Msa0689430 | AT2G33350.2 | 56.452 | 62 | 24 | 1 | 192 | 253 | 297 | 355 | 3.86e-16 | 77.8 |
| Msa0689430 | AT2G33350.1 | 56.452 | 62 | 24 | 1 | 192 | 253 | 298 | 356 | 3.98e-16 | 77.8 |
| Msa0689430 | AT2G33350.4 | 56.452 | 62 | 24 | 1 | 192 | 253 | 286 | 344 | 4.34e-16 | 77.4 |
| Msa0689430 | AT2G33350.5 | 64.000 | 50 | 18 | 0 | 204 | 253 | 315 | 364 | 4.51e-16 | 77.4 |
| Msa0689430 | AT5G59990.1 | 59.091 | 44 | 18 | 0 | 215 | 258 | 170 | 213 | 1.04e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAATTAATTCAGTTAA+AGG | 0.186554 | 4_4:+56465675 | None:intergenic |
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 4_4:+56466484 | None:intergenic |
| TTTCTTTCTCTTACTACAAC+TGG | 0.317260 | 4_4:-56469661 | Msa0689430:five_prime_UTR |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 4_4:-56467127 | Msa0689430:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 4_4:+56465733 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 4_4:+56467162 | None:intergenic |
| AGTACTAATGGCAATTTGTA+TGG | 0.364332 | 4_4:+56465283 | None:intergenic |
| GAATTATTTCTAACAATGAT+TGG | 0.365515 | 4_4:-56465335 | Msa0689430:three_prime_UTR |
| TGGGAAAATTATAGACTTGA+TGG | 0.366764 | 4_4:-56465578 | Msa0689430:three_prime_UTR |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 4_4:-56467078 | Msa0689430:CDS |
| GCAATTTGTATGGATCAATA+TGG | 0.372128 | 4_4:+56465293 | None:intergenic |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 4_4:-56465725 | Msa0689430:CDS |
| GTTTCAATGAGAAACATAAA+AGG | 0.384534 | 4_4:+56469619 | None:intergenic |
| GATTGTGAGGAAGGGGTTTG+AGG | 0.386629 | 4_4:+56469715 | None:intergenic |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 4_4:-56466470 | Msa0689430:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 4_4:-56465777 | Msa0689430:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 4_4:+56467090 | None:intergenic |
| GACCTTCTAGATATGTATAT+AGG | 0.415169 | 4_4:-56465462 | Msa0689430:three_prime_UTR |
| CTACAAAGAAAAGGCTACTA+AGG | 0.418223 | 4_4:+56465493 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 4_4:+56467060 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 4_4:-56467122 | Msa0689430:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 4_4:-56467144 | Msa0689430:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 4_4:+56467220 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 4_4:+56467156 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 4_4:+56469527 | None:intergenic |
| GTATGTAAAGATTGTGAGGA+AGG | 0.455281 | 4_4:+56469706 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 4_4:-56466469 | Msa0689430:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 4_4:+56466533 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 4_4:+56467070 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 4_4:-56467364 | Msa0689430:CDS |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 4_4:-56469471 | Msa0689430:intron |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 4_4:+56469528 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 4_4:+56467434 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 4_4:-56467433 | Msa0689430:CDS |
| AACCTATATACATATCTAGA+AGG | 0.488206 | 4_4:+56465460 | None:intergenic |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 4_4:+56467403 | None:intergenic |
| CATATCCATCTACAAAGAAA+AGG | 0.491733 | 4_4:+56465484 | None:intergenic |
| TATAACTTGAGCAGGTATCA+TGG | 0.496613 | 4_4:-56465550 | Msa0689430:three_prime_UTR |
| GCTACTAAGGAAAACTGCTT+AGG | 0.497063 | 4_4:+56465506 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 4_4:-56467349 | Msa0689430:CDS |
| TGGAATTCTATAACTTGAGC+AGG | 0.500490 | 4_4:-56465558 | Msa0689430:three_prime_UTR |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 4_4:+56469463 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 4_4:-56466596 | Msa0689430:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 4_4:-56467475 | Msa0689430:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 4_4:+56467204 | None:intergenic |
| TCCCATCACATAGCACTACC+AGG | 0.529438 | 4_4:+56465596 | None:intergenic |
| ATGTAAAGATTGTGAGGAAG+GGG | 0.535767 | 4_4:+56469708 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 4_4:+56467414 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 4_4:+56467078 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 4_4:-56467474 | Msa0689430:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 4_4:-56467114 | Msa0689430:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 4_4:+56467234 | None:intergenic |
| GTTTGATGAATAATAAAAGA+AGG | 0.543872 | 4_4:-56465440 | Msa0689430:three_prime_UTR |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 4_4:-56467387 | Msa0689430:CDS |
| TATGTAAAGATTGTGAGGAA+GGG | 0.546950 | 4_4:+56469707 | None:intergenic |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 4_4:-56467427 | Msa0689430:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 4_4:+56467435 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 4_4:+56467061 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 4_4:+56466552 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 4_4:-56466456 | Msa0689430:intron |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 4_4:-56467363 | Msa0689430:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 4_4:+56466547 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 4_4:-56465705 | Msa0689430:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 4_4:-56467383 | Msa0689430:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 4_4:-56465773 | Msa0689430:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 4_4:-56466590 | Msa0689430:intron |
| GCCTGGTAGTGCTATGTGAT+GGG | 0.609531 | 4_4:-56465597 | Msa0689430:three_prime_UTR |
| AGCCTGGTAGTGCTATGTGA+TGG | 0.609985 | 4_4:-56465598 | Msa0689430:three_prime_UTR |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 4_4:-56465742 | Msa0689430:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 4_4:-56466575 | Msa0689430:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 4_4:+56467383 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 4_4:-56467384 | Msa0689430:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 4_4:-56466481 | Msa0689430:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 4_4:+56467248 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 4_4:-56466556 | Msa0689430:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 4_4:-56465722 | Msa0689430:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 4_4:+56467499 | None:intergenic |
| GTATGTATGTAAAGATTGTG+AGG | 0.669763 | 4_4:+56469702 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 4_4:-56467382 | Msa0689430:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 4_4:-56466466 | Msa0689430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTCTTCAATTTTA+TGG | - | chr4_4:56466263-56466282 | Msa0689430:intron | 10.0% |
| !! | ATACAATACTAATATTTAAA+AGG | - | chr4_4:56467366-56467385 | Msa0689430:CDS | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | - | chr4_4:56468046-56468065 | Msa0689430:intron | 10.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | + | chr4_4:56465591-56465610 | None:intergenic | 15.0% |
| !!! | ATATTTCTTAATAGTTTTCT+AGG | - | chr4_4:56465767-56465786 | Msa0689430:CDS | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | - | chr4_4:56465931-56465950 | Msa0689430:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | - | chr4_4:56465988-56466007 | Msa0689430:intron | 15.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | - | chr4_4:56466062-56466081 | Msa0689430:intron | 15.0% |
| !! | ATATTATTACCAAGAAAAAA+GGG | + | chr4_4:56466375-56466394 | None:intergenic | 15.0% |
| !! | AATATTATTACCAAGAAAAA+AGG | + | chr4_4:56466376-56466395 | None:intergenic | 15.0% |
| !! | TTGAAGTTAGATTAATTTAA+CGG | - | chr4_4:56466551-56466570 | Msa0689430:CDS | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | - | chr4_4:56467399-56467418 | Msa0689430:CDS | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | - | chr4_4:56468077-56468096 | Msa0689430:intron | 15.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | + | chr4_4:56465831-56465850 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | - | chr4_4:56465896-56465915 | Msa0689430:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | + | chr4_4:56466257-56466276 | None:intergenic | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | - | chr4_4:56466380-56466399 | Msa0689430:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | - | chr4_4:56466414-56466433 | Msa0689430:intron | 20.0% |
| !! | TAAATATATCGTTACAAAAG+AGG | - | chr4_4:56466452-56466471 | Msa0689430:intron | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | + | chr4_4:56466685-56466704 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | - | chr4_4:56466696-56466715 | Msa0689430:intron | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | - | chr4_4:56466819-56466838 | Msa0689430:intron | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | - | chr4_4:56467332-56467351 | Msa0689430:intron | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | - | chr4_4:56467529-56467548 | Msa0689430:intron | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | - | chr4_4:56467530-56467549 | Msa0689430:intron | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | + | chr4_4:56468072-56468091 | None:intergenic | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | + | chr4_4:56468200-56468219 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | + | chr4_4:56468325-56468344 | None:intergenic | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | - | chr4_4:56468649-56468668 | Msa0689430:intron | 20.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | + | chr4_4:56468920-56468939 | None:intergenic | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | + | chr4_4:56469205-56469224 | None:intergenic | 20.0% |
| !! | TCTTCAATTAATTCAGTTAA+AGG | + | chr4_4:56469332-56469351 | None:intergenic | 20.0% |
| !! | GTTTGATGAATAATAAAAGA+AGG | - | chr4_4:56469564-56469583 | Msa0689430:exon | 20.0% |
| !!! | GAATTATTTCTAACAATGAT+TGG | - | chr4_4:56469669-56469688 | Msa0689430:five_prime_UTR | 20.0% |
| ! | GTTTCAATGAGAAACATAAA+AGG | + | chr4_4:56465388-56465407 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | + | chr4_4:56465561-56465580 | None:intergenic | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | - | chr4_4:56466207-56466226 | Msa0689430:intron | 25.0% |
| !!! | CATATTATTCCCTTTTTTCT+TGG | - | chr4_4:56466363-56466382 | Msa0689430:intron | 25.0% |
| ! | ATTAATCTAACTTCAAAGTG+CGG | + | chr4_4:56466547-56466566 | None:intergenic | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | - | chr4_4:56466818-56466837 | Msa0689430:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | + | chr4_4:56466881-56466900 | None:intergenic | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | - | chr4_4:56467081-56467100 | Msa0689430:CDS | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | - | chr4_4:56467195-56467214 | Msa0689430:CDS | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | + | chr4_4:56467221-56467240 | None:intergenic | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr4_4:56467733-56467752 | Msa0689430:intron | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr4_4:56467985-56468004 | Msa0689430:intron | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | - | chr4_4:56467997-56468016 | Msa0689430:intron | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | + | chr4_4:56468172-56468191 | None:intergenic | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | - | chr4_4:56468299-56468318 | Msa0689430:intron | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | + | chr4_4:56468371-56468390 | None:intergenic | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | - | chr4_4:56468372-56468391 | Msa0689430:intron | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | + | chr4_4:56468379-56468398 | None:intergenic | 25.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | + | chr4_4:56468624-56468643 | None:intergenic | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | - | chr4_4:56468655-56468674 | Msa0689430:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | - | chr4_4:56469209-56469228 | Msa0689430:intron | 25.0% |
| ! | AACCTATATACATATCTAGA+AGG | + | chr4_4:56469547-56469566 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAAAAAAAAGAG+AGG | - | chr4_4:56469579-56469598 | Msa0689430:five_prime_UTR | 25.0% |
| TATGTAAAGATTGTGAGGAA+GGG | + | chr4_4:56465300-56465319 | None:intergenic | 30.0% | |
| GTATGTATGTAAAGATTGTG+AGG | + | chr4_4:56465305-56465324 | None:intergenic | 30.0% | |
| TTTCTTTCTCTTACTACAAC+TGG | - | chr4_4:56465343-56465362 | Msa0689430:three_prime_UTR | 30.0% | |
| ! | AAACATTTTTGTTAGCTGAG+AGG | + | chr4_4:56465436-56465455 | None:intergenic | 30.0% |
| ACAAAAATGTTTGCAGAAAC+TGG | - | chr4_4:56465444-56465463 | Msa0689430:three_prime_UTR | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | + | chr4_4:56465479-56465498 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | + | chr4_4:56465480-56465499 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | + | chr4_4:56465562-56465581 | None:intergenic | 30.0% | |
| !! | ATCTGGAAAAGTGTTACAAA+AGG | - | chr4_4:56466186-56466205 | Msa0689430:intron | 30.0% |
| !!! | GTAATCATGCTTGCTATTTT+TGG | - | chr4_4:56466474-56466493 | Msa0689430:CDS | 30.0% |
| ! | AACTTTTCGTACAAGCAAAA+TGG | + | chr4_4:56466661-56466680 | None:intergenic | 30.0% |
| TATTACTCAGCTCAAGAATA+TGG | + | chr4_4:56466724-56466743 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | - | chr4_4:56466829-56466848 | Msa0689430:intron | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | - | chr4_4:56466830-56466849 | Msa0689430:intron | 30.0% |
| CTTTCTCTCTCTTTGTAAAA+TGG | - | chr4_4:56467135-56467154 | Msa0689430:CDS | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | + | chr4_4:56467172-56467191 | None:intergenic | 30.0% | |
| ! | GTTTTCACTTTAACTGTGTA+AGG | - | chr4_4:56467261-56467280 | Msa0689430:CDS | 30.0% |
| AATGACAAAAGACATACTAG+GGG | + | chr4_4:56467437-56467456 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | + | chr4_4:56467438-56467457 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | + | chr4_4:56467439-56467458 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | + | chr4_4:56467773-56467792 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | + | chr4_4:56467845-56467864 | None:intergenic | 30.0% | |
| ! | CTCTTTGATAATAGTACATC+AGG | + | chr4_4:56467851-56467870 | None:intergenic | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr4_4:56467877-56467896 | Msa0689430:intron | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | - | chr4_4:56467882-56467901 | Msa0689430:intron | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | - | chr4_4:56467950-56467969 | Msa0689430:intron | 30.0% |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr4_4:56468166-56468185 | None:intergenic | 30.0% |
| TATGTTGATGTATCTAGACT+CGG | - | chr4_4:56468220-56468239 | Msa0689430:intron | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | - | chr4_4:56468408-56468427 | Msa0689430:intron | 30.0% | |
| AAGAAAAACTCTCCAGATAT+AGG | - | chr4_4:56468508-56468527 | Msa0689430:intron | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | + | chr4_4:56468523-56468542 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | - | chr4_4:56468523-56468542 | Msa0689430:intron | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | + | chr4_4:56468581-56468600 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | + | chr4_4:56468795-56468814 | None:intergenic | 30.0% | |
| ! | GGAGTATTAGTATTTGCAAA+TGG | + | chr4_4:56468856-56468875 | None:intergenic | 30.0% |
| TTTGCAAATACTAATACTCC+TGG | - | chr4_4:56468856-56468875 | Msa0689430:intron | 30.0% | |
| TCAACATTATACTTCATACC+AGG | + | chr4_4:56468877-56468896 | None:intergenic | 30.0% | |
| ! | AATCATTGCTTCAACTTTTG+AGG | - | chr4_4:56469007-56469026 | Msa0689430:intron | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | + | chr4_4:56469110-56469129 | None:intergenic | 30.0% |
| TGCATCAGATCAAAAAAAGA+TGG | - | chr4_4:56469380-56469399 | Msa0689430:intron | 30.0% | |
| TGGGAAAATTATAGACTTGA+TGG | - | chr4_4:56469426-56469445 | Msa0689430:intron | 30.0% | |
| CATATCCATCTACAAAGAAA+AGG | + | chr4_4:56469523-56469542 | None:intergenic | 30.0% | |
| GACCTTCTAGATATGTATAT+AGG | - | chr4_4:56469542-56469561 | Msa0689430:CDS | 30.0% | |
| AGGAAAAAAAAAGAGAGGTA+AGG | - | chr4_4:56469584-56469603 | Msa0689430:five_prime_UTR | 30.0% | |
| GCAATTTGTATGGATCAATA+TGG | + | chr4_4:56469714-56469733 | None:intergenic | 30.0% | |
| ATGTAAAGATTGTGAGGAAG+GGG | + | chr4_4:56465299-56465318 | None:intergenic | 35.0% | |
| GTATGTAAAGATTGTGAGGA+AGG | + | chr4_4:56465301-56465320 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | - | chr4_4:56465533-56465552 | Msa0689430:three_prime_UTR | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | + | chr4_4:56465673-56465692 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | - | chr4_4:56465672-56465691 | Msa0689430:three_prime_UTR | 35.0% | |
| !! | CTAGAGTTAGCTTTAATTGC+TGG | - | chr4_4:56466163-56466182 | Msa0689430:intron | 35.0% |
| !! | TTAGCTTTAATTGCTGGATC+TGG | - | chr4_4:56466169-56466188 | Msa0689430:intron | 35.0% |
| TCAATAAACCTCTCCTTAGT+GGG | + | chr4_4:56466330-56466349 | None:intergenic | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | + | chr4_4:56466331-56466350 | None:intergenic | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | - | chr4_4:56466333-56466352 | Msa0689430:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | + | chr4_4:56466755-56466774 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | + | chr4_4:56466888-56466907 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | + | chr4_4:56466931-56466950 | None:intergenic | 35.0% | |
| AACTACTGCAGAAAATTCTC+AGG | + | chr4_4:56467025-56467044 | None:intergenic | 35.0% | |
| ! | GAATGATACCGAGTTTTCAT+AGG | + | chr4_4:56467092-56467111 | None:intergenic | 35.0% |
| CTCTCTTTGTAAAATGGTTG+AGG | - | chr4_4:56467141-56467160 | Msa0689430:CDS | 35.0% | |
| ! | TGGCCTTAACAATTACTTGA+TGG | - | chr4_4:56467215-56467234 | Msa0689430:CDS | 35.0% |
| CTCTGCATTTAAACACAGTA+AGG | + | chr4_4:56467482-56467501 | None:intergenic | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | + | chr4_4:56467508-56467527 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | + | chr4_4:56467759-56467778 | None:intergenic | 35.0% | |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr4_4:56467860-56467879 | Msa0689430:intron | 35.0% |
| AATCAATTCCAGGGAAATCA+AGG | + | chr4_4:56467937-56467956 | None:intergenic | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr4_4:56468165-56468184 | None:intergenic | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr4_4:56468167-56468186 | None:intergenic | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr4_4:56468179-56468198 | Msa0689430:intron | 35.0% |
| ATGTTGATGTATCTAGACTC+GGG | - | chr4_4:56468221-56468240 | Msa0689430:intron | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | - | chr4_4:56468534-56468553 | Msa0689430:intron | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | - | chr4_4:56468535-56468554 | Msa0689430:intron | 35.0% | |
| ! | AAACTTTGGGAGGAAAATCA+AGG | - | chr4_4:56468548-56468567 | Msa0689430:intron | 35.0% |
| TACTTGCTTCTCTTACATCA+GGG | + | chr4_4:56468684-56468703 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | + | chr4_4:56468685-56468704 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | + | chr4_4:56468731-56468750 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | - | chr4_4:56468733-56468752 | Msa0689430:intron | 35.0% | |
| ! | AACAAACTCGTCCATTGATT+TGG | - | chr4_4:56468781-56468800 | Msa0689430:intron | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | - | chr4_4:56468800-56468819 | Msa0689430:intron | 35.0% |
| TGCATAATGCAGTTATTGCA+GGG | - | chr4_4:56468827-56468846 | Msa0689430:intron | 35.0% | |
| AAAAAACTGCATCAGTAGCA+AGG | - | chr4_4:56469078-56469097 | Msa0689430:intron | 35.0% | |
| ! | TTAAAAGCATGCAAGGGATT+AGG | + | chr4_4:56469104-56469123 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | + | chr4_4:56469111-56469130 | None:intergenic | 35.0% |
| CAAAAAAAGATGGAAAAGCC+TGG | - | chr4_4:56469390-56469409 | Msa0689430:intron | 35.0% | |
| TGGAATTCTATAACTTGAGC+AGG | - | chr4_4:56469446-56469465 | Msa0689430:intron | 35.0% | |
| TATAACTTGAGCAGGTATCA+TGG | - | chr4_4:56469454-56469473 | Msa0689430:intron | 35.0% | |
| ! | AAAACTGCTTAGGAGTTTTG+AGG | + | chr4_4:56469491-56469510 | None:intergenic | 35.0% |
| CTACAAAGAAAAGGCTACTA+AGG | + | chr4_4:56469514-56469533 | None:intergenic | 35.0% | |
| ! | AGTAGCCTTTTCTTTGTAGA+TGG | - | chr4_4:56469515-56469534 | Msa0689430:CDS | 35.0% |
| AGTCATACTCAAAGCACAAG+TGG | - | chr4_4:56466134-56466153 | Msa0689430:intron | 40.0% | |
| GTTGAAGTGTGAACTCATAG+TGG | - | chr4_4:56466287-56466306 | Msa0689430:intron | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | + | chr4_4:56466329-56466348 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | - | chr4_4:56466600-56466619 | Msa0689430:intron | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | + | chr4_4:56466652-56466671 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | - | chr4_4:56466737-56466756 | Msa0689430:intron | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | + | chr4_4:56466749-56466768 | None:intergenic | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | + | chr4_4:56466926-56466945 | None:intergenic | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | - | chr4_4:56466924-56466943 | Msa0689430:intron | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | + | chr4_4:56466964-56466983 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | + | chr4_4:56467309-56467328 | None:intergenic | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | + | chr4_4:56467572-56467591 | None:intergenic | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | + | chr4_4:56467573-56467592 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | - | chr4_4:56467571-56467590 | Msa0689430:intron | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | - | chr4_4:56467577-56467596 | Msa0689430:intron | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | + | chr4_4:56467593-56467612 | None:intergenic | 40.0% | |
| !! | AAGCGAACAACTTTTGAGTG+AGG | - | chr4_4:56467697-56467716 | Msa0689430:intron | 40.0% |
| GAGCAGGAATCTTGATTTCA+AGG | + | chr4_4:56467787-56467806 | None:intergenic | 40.0% | |
| !! | AGTTCAATGGATTGGATGCA+TGG | - | chr4_4:56467890-56467909 | Msa0689430:intron | 40.0% |
| CCGCGTTAAAATCAATTCCA+GGG | + | chr4_4:56467946-56467965 | None:intergenic | 40.0% | |
| !! | CCCTGGAATTGATTTTAACG+CGG | - | chr4_4:56467943-56467962 | Msa0689430:intron | 40.0% |
| ACCGCGTTAAAATCAATTCC+AGG | + | chr4_4:56467947-56467966 | None:intergenic | 40.0% | |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr4_4:56467974-56467993 | Msa0689430:intron | 40.0% |
| GTCTTATCTCTTCTCAACGT+GGG | + | chr4_4:56468116-56468135 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | + | chr4_4:56468117-56468136 | None:intergenic | 40.0% |
| CGTTGAGAAGAGATAAGACT+TGG | - | chr4_4:56468117-56468136 | Msa0689430:intron | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | - | chr4_4:56468414-56468433 | Msa0689430:intron | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | + | chr4_4:56468677-56468696 | None:intergenic | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | - | chr4_4:56468826-56468845 | Msa0689430:intron | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | + | chr4_4:56468978-56468997 | None:intergenic | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | + | chr4_4:56469181-56469200 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | - | chr4_4:56469227-56469246 | Msa0689430:intron | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | - | chr4_4:56469231-56469250 | Msa0689430:intron | 40.0% | |
| GCTACTAAGGAAAACTGCTT+AGG | + | chr4_4:56469501-56469520 | None:intergenic | 40.0% | |
| !! | AGAGGGTACCATTGAAGCAT+TGG | + | chr4_4:56465544-56465563 | None:intergenic | 45.0% |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | - | chr4_4:56466314-56466333 | Msa0689430:intron | 45.0% |
| ATCTAACTTCAAAGTGCGGC+TGG | + | chr4_4:56466543-56466562 | None:intergenic | 45.0% | |
| AGAAGCTGCATAAGCAACCT+AGG | - | chr4_4:56466632-56466651 | Msa0689430:intron | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | - | chr4_4:56466633-56466652 | Msa0689430:intron | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | - | chr4_4:56466792-56466811 | Msa0689430:intron | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | - | chr4_4:56466793-56466812 | Msa0689430:intron | 45.0% | |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | + | chr4_4:56466807-56466826 | None:intergenic | 45.0% |
| AGCTCTTCCTTTCCATGTCA+AGG | - | chr4_4:56466916-56466935 | Msa0689430:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | - | chr4_4:56467156-56467175 | Msa0689430:CDS | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | + | chr4_4:56467604-56467623 | None:intergenic | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | - | chr4_4:56467621-56467640 | Msa0689430:intron | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | - | chr4_4:56467622-56467641 | Msa0689430:intron | 45.0% | |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr4_4:56467655-56467674 | Msa0689430:intron | 45.0% |
| TTCTCGTCAATGTTCAGAGC+AGG | + | chr4_4:56467803-56467822 | None:intergenic | 45.0% | |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr4_4:56468305-56468324 | Msa0689430:intron | 45.0% |
| GGCAATGGTAACATGAGTGT+TGG | - | chr4_4:56468429-56468448 | Msa0689430:intron | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr4_4:56468460-56468479 | None:intergenic | 45.0% |
| GTGCAGTTGCTGAGAAGAAA+AGG | + | chr4_4:56468474-56468493 | None:intergenic | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | - | chr4_4:56468538-56468557 | Msa0689430:intron | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | + | chr4_4:56469191-56469210 | None:intergenic | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | + | chr4_4:56469274-56469293 | None:intergenic | 45.0% | |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr4_4:56469282-56469301 | None:intergenic | 45.0% |
| CCGTGGAAGATTTGCGAAAA+CGG | - | chr4_4:56469279-56469298 | Msa0689430:intron | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | - | chr4_4:56469282-56469301 | Msa0689430:intron | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | - | chr4_4:56469299-56469318 | Msa0689430:intron | 45.0% | |
| !!! | AACATATTAAATTTTTATAT+TGG | + | chr4_4:56468206-56468225 | None:intergenic | 5.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | - | chr4_4:56466319-56466338 | Msa0689430:intron | 50.0% |
| ATCCAACGACTGATCAGGTG+CGG | - | chr4_4:56466605-56466624 | Msa0689430:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | + | chr4_4:56466800-56466819 | None:intergenic | 50.0% |
| GAGCTGAGTAGTAGTGTCAC+AGG | + | chr4_4:56466901-56466920 | None:intergenic | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | + | chr4_4:56467299-56467318 | None:intergenic | 50.0% | |
| ACTGAGTAACGCGGATGAGT+TGG | + | chr4_4:56467300-56467319 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | - | chr4_4:56467617-56467636 | Msa0689430:intron | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | - | chr4_4:56467620-56467639 | Msa0689430:intron | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | + | chr4_4:56467624-56467643 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | + | chr4_4:56467917-56467936 | None:intergenic | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | + | chr4_4:56467929-56467948 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | - | chr4_4:56467926-56467945 | Msa0689430:intron | 50.0% | |
| ! | TTGGCCAATCCACTCTAGAG+AGG | - | chr4_4:56468448-56468467 | Msa0689430:intron | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr4_4:56468455-56468474 | None:intergenic | 50.0% |
| GACAGTCAACCAAGAATCCG+TGG | - | chr4_4:56469262-56469281 | Msa0689430:intron | 50.0% | |
| ! | AGCCTGGTAGTGCTATGTGA+TGG | - | chr4_4:56469406-56469425 | Msa0689430:intron | 50.0% |
| ! | GCCTGGTAGTGCTATGTGAT+GGG | - | chr4_4:56469407-56469426 | Msa0689430:intron | 50.0% |
| TCCCATCACATAGCACTACC+AGG | + | chr4_4:56469411-56469430 | None:intergenic | 50.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | + | chr4_4:56466538-56466557 | None:intergenic | 55.0% | |
| AACCGCACCTGATCAGTCGT+TGG | + | chr4_4:56466610-56466629 | None:intergenic | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | + | chr4_4:56467290-56467309 | None:intergenic | 55.0% |
| GTCCTCTTTAGCGCTGCACA+CGG | - | chr4_4:56468243-56468262 | Msa0689430:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | - | chr4_4:56468250-56468269 | Msa0689430:intron | 55.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | + | chr4_4:56467291-56467310 | None:intergenic | 60.0% |
| TGGGGAAGACATGTCGTCGC+AGG | - | chr4_4:56467640-56467659 | Msa0689430:intron | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | - | chr4_4:56467641-56467660 | Msa0689430:intron | 60.0% | |
| CACCGTGTGCAGCGCTAAAG+AGG | + | chr4_4:56468248-56468267 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 56465292 | 56469734 | 56465292 | ID=Msa0689430;Name=Msa0689430 |
| chr4_4 | mRNA | 56465292 | 56469734 | 56465292 | ID=Msa0689430-mRNA-1;Parent=Msa0689430;Name=Msa0689430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=158|0.5|0.6|1|0.5|0.6|5|407|258 |
| chr4_4 | exon | 56465292 | 56465788 | 56465292 | ID=Msa0689430-mRNA-1:exon:14897;Parent=Msa0689430-mRNA-1 |
| chr4_4 | exon | 56466457 | 56466603 | 56466457 | ID=Msa0689430-mRNA-1:exon:14896;Parent=Msa0689430-mRNA-1 |
| chr4_4 | exon | 56467062 | 56467307 | 56467062 | ID=Msa0689430-mRNA-1:exon:14895;Parent=Msa0689430-mRNA-1 |
| chr4_4 | exon | 56467338 | 56467526 | 56467338 | ID=Msa0689430-mRNA-1:exon:14894;Parent=Msa0689430-mRNA-1 |
| chr4_4 | exon | 56469472 | 56469734 | 56469472 | ID=Msa0689430-mRNA-1:exon:14893;Parent=Msa0689430-mRNA-1 |
| chr4_4 | five_prime_UTR | 56469577 | 56469734 | 56469577 | ID=Msa0689430-mRNA-1:five_prime_utr;Parent=Msa0689430-mRNA-1 |
| chr4_4 | CDS | 56469472 | 56469576 | 56469472 | ID=Msa0689430-mRNA-1:cds;Parent=Msa0689430-mRNA-1 |
| chr4_4 | CDS | 56467338 | 56467526 | 56467338 | ID=Msa0689430-mRNA-1:cds;Parent=Msa0689430-mRNA-1 |
| chr4_4 | CDS | 56467062 | 56467307 | 56467062 | ID=Msa0689430-mRNA-1:cds;Parent=Msa0689430-mRNA-1 |
| chr4_4 | CDS | 56466457 | 56466603 | 56466457 | ID=Msa0689430-mRNA-1:cds;Parent=Msa0689430-mRNA-1 |
| chr4_4 | CDS | 56465699 | 56465788 | 56465699 | ID=Msa0689430-mRNA-1:cds;Parent=Msa0689430-mRNA-1 |
| chr4_4 | three_prime_UTR | 56465292 | 56465698 | 56465292 | ID=Msa0689430-mRNA-1:three_prime_utr;Parent=Msa0689430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
