AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078120 MtrunA17_Chr1g0188211 99.412 340 2 0 1 340 1 340 0.0 685
Msa0078120 MtrunA17_Chr6g0476061 53.644 343 115 13 1 325 1 317 6.89e-91 274
Msa0078120 MtrunA17_Chr7g0245841 49.107 336 124 11 1 310 1 315 2.08e-76 238
Msa0078120 MtrunA17_Chr4g0056761 51.799 278 90 8 17 267 17 277 5.78e-63 203
Msa0078120 MtrunA17_Chr8g0351761 41.096 365 133 9 1 310 1 338 5.55e-60 196
Msa0078120 MtrunA17_Chr1g0179461 39.871 311 145 11 49 340 69 356 5.32e-50 171
Msa0078120 MtrunA17_Chr5g0398621 44.151 265 98 9 14 264 3 231 5.00e-48 162
Msa0078120 MtrunA17_Chr8g0349091 42.578 256 120 8 49 301 89 320 1.92e-43 152
Msa0078120 MtrunA17_Chr5g0397551 43.363 226 104 7 37 261 59 261 1.46e-42 150
Msa0078120 MtrunA17_Chr7g0247431 41.026 234 116 4 48 278 88 302 1.53e-42 150
Msa0078120 MtrunA17_Chr4g0054661 45.413 218 83 6 42 249 66 257 1.11e-41 148
Msa0078120 MtrunA17_Chr6g0476241 42.534 221 95 5 46 266 117 305 4.58e-40 143
Msa0078120 MtrunA17_Chr8g0386741 39.035 228 121 5 48 274 96 306 5.04e-36 133
Msa0078120 MtrunA17_Chr1g0190011 50.427 117 53 3 134 248 109 222 1.07e-27 110
Msa0078120 MtrunA17_Chr7g0274821 53.719 121 52 2 130 249 139 256 1.36e-27 110
Msa0078120 MtrunA17_Chr4g0027371 47.287 129 64 2 124 248 9 137 2.03e-26 105
Msa0078120 MtrunA17_Chr4g0027351 50.382 131 57 3 115 243 4 128 3.85e-26 101
Msa0078120 MtrunA17_Chr4g0027331 49.242 132 59 3 115 242 4 131 7.02e-26 100
Msa0078120 MtrunA17_Chr1g0165101 37.443 219 97 6 47 248 83 278 4.73e-24 101
Msa0078120 MtrunA17_Chr3g0133051 41.463 123 69 3 134 253 101 223 1.06e-23 99.0
Msa0078120 MtrunA17_Chr4g0027301 44.355 124 65 2 124 243 16 139 6.52e-20 84.7
Msa0078120 MtrunA17_Chr5g0417581 41.912 136 62 4 129 248 14 148 1.59e-19 85.5
Msa0078120 MtrunA17_Chr5g0443311 38.172 186 89 6 69 249 27 191 1.05e-18 84.3
Msa0078120 MtrunA17_Chr3g0112131 43.966 116 61 2 134 248 106 218 1.12e-17 82.4
Msa0078120 MtrunA17_Chr5g0427311 36.552 145 83 6 126 263 72 214 1.55e-17 80.9
Msa0078120 MtrunA17_Chr1g0168121 40.171 117 66 2 133 248 68 181 2.27e-16 78.2
Msa0078120 MtrunA17_Chr5g0398531 37.654 162 81 4 88 248 97 239 2.54e-16 78.6
Msa0078120 MtrunA17_Chr7g0250031 46.610 118 55 3 134 248 84 196 2.70e-16 77.8
Msa0078120 MtrunA17_Chr4g0054651 44.068 118 58 3 134 248 103 215 1.05e-15 76.6
Msa0078120 MtrunA17_Chr8g0351651 37.736 159 79 4 91 248 86 225 1.21e-15 76.6
Msa0078120 MtrunA17_Chr5g0435681 42.241 116 63 2 134 248 116 228 9.32e-15 74.3
Msa0078120 MtrunA17_Chr3g0086021 39.252 107 58 2 146 248 118 221 8.61e-14 70.9
Msa0078120 MtrunA17_Chr1g0190051 40.517 116 65 2 134 248 101 213 3.12e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078120 AT4G25320.1 67.925 212 58 5 48 256 85 289 1.93e-84 261
Msa0078120 AT5G62260.1 64.545 220 64 7 49 261 76 288 1.69e-83 259
Msa0078120 AT5G62260.3 64.545 220 64 7 49 261 76 288 1.69e-83 259
Msa0078120 AT5G62260.2 62.150 214 67 7 49 255 76 282 4.49e-77 238
Msa0078120 AT4G12080.1 58.051 236 73 7 48 271 88 309 1.62e-75 236
Msa0078120 AT5G51590.1 59.016 244 63 6 34 251 64 296 3.08e-71 228
Msa0078120 AT4G22770.2 56.195 226 80 7 48 267 71 283 1.32e-58 192
Msa0078120 AT4G22770.1 56.195 226 80 7 48 267 71 283 1.32e-58 192
Msa0078120 AT4G00200.2 53.817 262 91 8 15 265 14 256 1.70e-56 186
Msa0078120 AT4G00200.1 53.817 262 91 8 15 265 14 256 1.70e-56 186
Msa0078120 AT2G33620.1 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0078120 AT2G33620.4 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0078120 AT2G33620.2 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0078120 AT2G33620.3 53.589 209 67 6 48 250 96 280 1.17e-52 177
Msa0078120 AT2G45850.1 37.544 285 149 5 7 288 56 314 8.11e-45 157
Msa0078120 AT2G45850.2 37.544 285 149 5 7 288 56 314 8.11e-45 157
Msa0078120 AT1G63470.1 45.933 209 90 5 48 251 104 294 5.60e-44 155
Msa0078120 AT2G45850.3 40.000 240 118 4 7 243 56 272 9.50e-41 144
Msa0078120 AT4G17950.1 37.868 272 112 9 48 292 130 371 2.29e-39 144
Msa0078120 AT3G61310.1 46.377 207 86 6 45 249 97 280 2.67e-39 142
Msa0078120 AT5G46640.1 43.119 218 92 5 45 249 98 296 2.03e-37 138
Msa0078120 AT1G63480.2 40.385 208 92 6 48 251 98 277 8.39e-35 130
Msa0078120 AT1G63480.1 40.385 208 92 6 48 251 98 277 8.39e-35 130
Msa0078120 AT1G63480.5 40.385 208 92 6 48 251 92 271 9.40e-35 130
Msa0078120 AT1G63480.7 40.385 208 92 6 48 251 92 271 9.40e-35 130
Msa0078120 AT1G63480.4 40.385 208 92 6 48 251 92 271 9.40e-35 130
Msa0078120 AT1G63480.3 40.385 208 92 6 48 251 92 271 9.40e-35 130
Msa0078120 AT1G63480.6 40.385 208 92 6 48 251 92 271 9.40e-35 130
Msa0078120 AT3G04590.1 39.207 227 108 6 30 248 79 283 9.24e-33 124
Msa0078120 AT3G04590.2 39.207 227 108 6 30 248 79 283 5.76e-32 124
Msa0078120 AT2G36560.1 43.704 135 70 4 131 262 102 233 6.29e-24 102
Msa0078120 AT5G49700.1 37.778 135 78 4 134 262 83 217 2.89e-20 89.4
Msa0078120 AT2G42940.1 38.983 177 79 7 76 249 43 193 1.05e-18 84.7
Msa0078120 AT1G14490.2 37.500 144 83 5 126 262 41 184 1.43e-17 80.9
Msa0078120 AT1G14490.1 37.500 144 83 5 126 262 22 165 1.47e-17 80.5
Msa0078120 AT3G60870.1 40.517 116 63 3 134 248 86 196 3.73e-17 80.5
Msa0078120 AT4G14465.1 43.103 116 62 2 134 248 94 206 4.31e-16 77.8
Msa0078120 AT2G35270.1 39.130 161 74 5 91 248 78 217 9.17e-16 77.0
Msa0078120 AT3G55560.1 41.026 117 66 2 134 249 115 229 1.91e-14 73.6
Msa0078120 AT1G76500.1 35.200 125 68 3 134 248 99 220 1.61e-13 70.5
Msa0078120 AT4G17800.1 41.228 114 63 2 136 248 111 221 1.79e-13 70.5
Msa0078120 AT3G04570.1 38.710 124 64 3 134 248 107 227 2.31e-12 67.4
Msa0078120 AT5G28590.1 37.398 123 46 3 130 248 26 121 2.34e-12 65.9
Msa0078120 AT4G12050.1 40.171 117 65 3 134 248 145 258 9.19e-12 65.9
Msa0078120 AT4G22810.1 32.716 162 86 5 91 248 105 247 1.25e-11 65.1
Msa0078120 AT2G45430.1 34.969 163 82 5 91 248 89 232 1.67e-11 64.7
Msa0078120 AT4G35390.1 41.176 119 62 4 134 248 90 204 1.73e-11 64.7

Find 121 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATTACCACAGAAATTT+TGG 0.113361 1_2:+55429852 None:intergenic
TTAAGCTAAATTTAGAATTT+TGG 0.127303 1_2:-55429544 Msa0078120:five_prime_UTR
AAAATTGAAAGTATAAATTT+TGG 0.212639 1_2:+55430073 None:intergenic
ACTGTTCCAATTCAATTTCT+AGG 0.268350 1_2:-55429757 Msa0078120:five_prime_UTR
AAATAAAGTAATTAAATATT+CGG 0.279604 1_2:+55430020 None:intergenic
ATGTGTGATTTGTGAATTTA+GGG 0.286667 1_2:+55429929 None:intergenic
ATGGAAGAAAGAGAGAATTT+TGG 0.289936 1_2:-55429490 Msa0078120:CDS
CTTCGTCAATCGACTTCTTC+AGG 0.300773 1_2:-55426374 Msa0078120:CDS
CATGTGTGATTTGTGAATTT+AGG 0.300996 1_2:+55429928 None:intergenic
AATTCTATTCTCTATATATA+TGG 0.303409 1_2:-55425296 Msa0078120:three_prime_UTR
CCACCCAATACTCGGCCATC+TGG 0.308208 1_2:+55425965 None:intergenic
GATTTGTGAATTTAGGGTTT+TGG 0.311501 1_2:+55429935 None:intergenic
TCCATTCTCAGTTGGCATAA+AGG 0.318075 1_2:+55426033 None:intergenic
AACGGTGCCGGTGTCGTTGC+CGG 0.338330 1_2:-55429380 Msa0078120:CDS
GGCCCAGATGGCCGAGTATT+GGG 0.346491 1_2:-55425968 Msa0078120:CDS
TTTGAGATTCTTTCCTTGTC+TGG 0.357599 1_2:-55426058 Msa0078120:CDS
AATGCAGCAGGTGTCATAAA+AGG 0.358990 1_2:+55425657 None:intergenic
TATGTGCTTACAGTGAATTC+TGG 0.363275 1_2:-55426657 Msa0078120:CDS
TCCTTTATGCCAACTGAGAA+TGG 0.367271 1_2:-55426034 Msa0078120:CDS
TGAAGACCTAGAAATTGAAT+TGG 0.368969 1_2:+55429751 None:intergenic
TGGTGGGATGAGTGTCTCTT+TGG 0.369450 1_2:-55425993 Msa0078120:CDS
TAACTTCAGAAAACAGAGTT+TGG 0.376776 1_2:+55429658 None:intergenic
AGGCCCAGATGGCCGAGTAT+TGG 0.385737 1_2:-55425969 Msa0078120:CDS
CTTGTAATTCCATTCTCAGT+TGG 0.403549 1_2:+55426025 None:intergenic
TCAAGTTATTCTGTTGTGAA+TGG 0.409214 1_2:-55425225 Msa0078120:three_prime_UTR
GAGAGTTCTCAGCTTGGAAA+AGG 0.409824 1_2:-55429237 Msa0078120:CDS
CCATCTGGACCATACTTCCT+TGG 0.412247 1_2:+55429328 None:intergenic
GTCTCTTTGGCAGGCCCAGA+TGG 0.415568 1_2:-55425980 Msa0078120:CDS
CAGAGATCCTTTACCTGAAA+AGG 0.415604 1_2:-55425565 Msa0078120:CDS
GAAAACGTTTGAATCTTCAA+TGG 0.416459 1_2:-55429574 Msa0078120:five_prime_UTR
GAAAGCGCAGTCACAGCTCC+AGG 0.416976 1_2:+55429295 None:intergenic
GCTGGTTTGCTTATAGCTTC+CGG 0.419761 1_2:-55425935 Msa0078120:CDS
TCCAAGTTGTTATCAATCCT+TGG 0.429223 1_2:+55429415 None:intergenic
TTCTTCTTCAAAGCTGTCTC+CGG 0.437794 1_2:+55429361 None:intergenic
GTTTAGTGTTAGATGTTAGT+TGG 0.439419 1_2:-55425426 Msa0078120:three_prime_UTR
AACGGAATCGACGATGAAAT+CGG 0.441018 1_2:+55429265 None:intergenic
GATTTCTTCATAGATTCAAC+AGG 0.446009 1_2:+55429202 None:intergenic
TTCGTCAATCGACTTCTTCA+GGG 0.447507 1_2:-55426373 Msa0078120:CDS
ATGCTATAATTAAGTGTGAT+TGG 0.454428 1_2:-55425273 Msa0078120:three_prime_UTR
AGGGGAAGACCAAGGAAGTA+TGG 0.459354 1_2:-55429337 Msa0078120:CDS
TGCATTCATTAGGTCGTTGT+GGG 0.460179 1_2:-55425822 Msa0078120:intron
GGAATTACAAGAAGCAGATC+TGG 0.463594 1_2:-55426013 Msa0078120:CDS
TATTGCACGTGATCCTTGTT+GGG 0.468137 1_2:+55426436 None:intergenic
CCAGGAGCAGGCTTACCATC+TGG 0.469400 1_2:+55429313 None:intergenic
TTCTCTTCTTGAAATGCAGC+AGG 0.470365 1_2:+55425645 None:intergenic
ATATTGCACGTGATCCTTGT+TGG 0.472595 1_2:+55426435 None:intergenic
CACCCAATACTCGGCCATCT+GGG 0.474541 1_2:+55425966 None:intergenic
AAAACGTTTGAATCTTCAAT+GGG 0.476944 1_2:-55429573 Msa0078120:five_prime_UTR
GCAGTCACAGCTCCAGGAGC+AGG 0.477303 1_2:+55429301 None:intergenic
GTGTCTAATGAAGTAAGTTT+CGG 0.481593 1_2:-55425690 Msa0078120:CDS
GTATTGGGTGGTGGACTCGC+TGG 0.482204 1_2:-55425953 Msa0078120:CDS
GTTTGAATCTTCAATGGGTA+GGG 0.483701 1_2:-55429568 Msa0078120:five_prime_UTR
CGACACCGGCACCGTTGCCA+TGG 0.488569 1_2:+55429387 None:intergenic
GGGATGAGTGTCTCTTTGGC+AGG 0.488739 1_2:-55425989 Msa0078120:CDS
TAAACTCACCTCATACGTTA+AGG 0.491146 1_2:+55426346 None:intergenic
TCATCGTCGATTCCGTTGAC+TGG 0.493414 1_2:-55429259 Msa0078120:CDS
CGTTTGAATCTTCAATGGGT+AGG 0.496496 1_2:-55429569 Msa0078120:five_prime_UTR
TCATTGTAGCAAATAGATGT+AGG 0.498893 1_2:-55425351 Msa0078120:three_prime_UTR
TTTGGTGCTGTGAATGTAGT+GGG 0.499641 1_2:-55429472 Msa0078120:CDS
CCAGATGGTAAGCCTGCTCC+TGG 0.499803 1_2:-55429313 Msa0078120:CDS
AAAATGGTTCACGTCCGTCT+TGG 0.503428 1_2:+55430101 None:intergenic
CGAGTCCACCACCCAATACT+CGG 0.505760 1_2:+55425957 None:intergenic
AGCAAAACAGCAAGAAGCAG+AGG 0.510263 1_2:-55425773 Msa0078120:CDS
AGAGTTTACCTGCACGGGAC+CGG 0.519678 1_2:+55425916 None:intergenic
ATCTCTGTCTTCAGCAGATG+AGG 0.527702 1_2:+55425581 None:intergenic
ACAACAATGCTCAAGACTCT+AGG 0.534120 1_2:-55425608 Msa0078120:CDS
AGAGTTCTCAGCTTGGAAAA+GGG 0.534719 1_2:-55429236 Msa0078120:CDS
TATAGCTTCCGGTCCCGTGC+AGG 0.538508 1_2:-55425924 Msa0078120:intron
ATATGTATTCTCTCTGCCAC+TGG 0.538679 1_2:-55426416 Msa0078120:CDS
GATGGCCGAGTATTGGGTGG+TGG 0.550417 1_2:-55425962 Msa0078120:CDS
GTGCATTCATTAGGTCGTTG+TGG 0.552620 1_2:-55425823 Msa0078120:intron
TCAGCTTGGAAAAGGGGTAG+AGG 0.552867 1_2:-55429229 Msa0078120:CDS
GAGTTCTCAGCTTGGAAAAG+GGG 0.553297 1_2:-55429235 Msa0078120:CDS
TCCAAGGATTGATAACAACT+TGG 0.557972 1_2:-55429416 Msa0078120:CDS
AGACAACCACAATTCTGTCC+TGG 0.562239 1_2:+55425467 None:intergenic
GCTGTCTCCGGCAACGACAC+CGG 0.564357 1_2:+55429373 None:intergenic
ACTCCAGAGTTTACCTGCAC+GGG 0.565877 1_2:+55425911 None:intergenic
TGATGATTAACATGCGGAGG+AGG 0.567490 1_2:+55425714 None:intergenic
AGACAGCTTTGAAGAAGAAG+AGG 0.569402 1_2:-55429357 Msa0078120:CDS
TGAGCTTTCAAGCTGCTCCA+AGG 0.570496 1_2:-55429432 Msa0078120:CDS
GACAGCTTTGAAGAAGAAGA+GGG 0.570605 1_2:-55429356 Msa0078120:CDS
AAGCACATAAGCTGTGAAGT+TGG 0.573504 1_2:+55426671 None:intergenic
CCAAGGAAGTATGGTCCAGA+TGG 0.574476 1_2:-55429328 Msa0078120:CDS
GAGGGAATTGCATACTCAGT+AGG 0.575333 1_2:-55426696 Msa0078120:CDS
CATTGTAGCAAATAGATGTA+GGG 0.575767 1_2:-55425350 Msa0078120:three_prime_UTR
GTAGGTGGAGGTGTAAGTGA+GGG 0.576701 1_2:-55426714 Msa0078120:CDS
AACTTACCAGGACAGAATTG+TGG 0.576879 1_2:-55425473 Msa0078120:three_prime_UTR
TACTCCAGAGTTTACCTGCA+CGG 0.581270 1_2:+55425910 None:intergenic
TGTAGGTGGAGGTGTAAGTG+AGG 0.583447 1_2:-55426715 Msa0078120:CDS
TAAATAATACCTTGCACAGG+TGG 0.587655 1_2:+55429154 None:intergenic
GCTGTCAAAATTAACTTACC+AGG 0.589328 1_2:-55425485 Msa0078120:three_prime_UTR
CAGCTTGGAAAAGGGGTAGA+GGG 0.590560 1_2:-55429228 Msa0078120:CDS
TTTGAAAGTCCACCTGTGCA+AGG 0.595210 1_2:-55429163 Msa0078120:intron
GCTGAGAACTCTCCAGTCAA+CGG 0.597272 1_2:+55429247 None:intergenic
GGAGCAGCTTGAAAGCTCAC+AGG 0.597686 1_2:+55429436 None:intergenic
ACTTTATTAAATTTCCAAGA+CGG 0.599935 1_2:-55430115 None:intergenic
AAACAGCAAGAAGCAGAGGG+TGG 0.602793 1_2:-55425769 Msa0078120:CDS
GAATGTAGTGGGTGGTAATG+AGG 0.604474 1_2:-55429461 Msa0078120:CDS
TGGCATAAAGGAACCAGACA+AGG 0.611075 1_2:+55426045 None:intergenic
TCGTCAATCGACTTCTTCAG+GGG 0.612115 1_2:-55426372 Msa0078120:CDS
AAAATTATGTCCTCCCAACA+AGG 0.612526 1_2:-55426449 Msa0078120:CDS
TGACTGGAGAGTTCTCAGCT+TGG 0.612765 1_2:-55429243 Msa0078120:CDS
TGCACGTGATCCTTGTTGGG+AGG 0.616462 1_2:+55426439 None:intergenic
CTATAAATAATACCTTGCAC+AGG 0.617295 1_2:+55429151 None:intergenic
TCTAATGAAGTAAGTTTCGG+TGG 0.620980 1_2:-55425687 Msa0078120:CDS
ATTACAAGAAGCAGATCTGG+TGG 0.630094 1_2:-55426010 Msa0078120:CDS
GCAAAACAGCAAGAAGCAGA+GGG 0.637562 1_2:-55425772 Msa0078120:CDS
AACATTTGAAATTGTGCCAG+TGG 0.637698 1_2:+55426400 None:intergenic
CCAGATGGCCGAGTATTGGG+TGG 0.641351 1_2:-55425965 Msa0078120:CDS
ACAGCATCAGTAAAAGCATG+AGG 0.647482 1_2:+55425503 None:intergenic
GGTGCTGTGAATGTAGTGGG+TGG 0.656148 1_2:-55429469 Msa0078120:CDS
ATCGACGATGAAATCGGCAT+AGG 0.666533 1_2:+55429271 None:intergenic
TTACAAGAAGCAGATCTGGT+GGG 0.675023 1_2:-55426009 Msa0078120:CDS
GACACATGATGATTAACATG+CGG 0.679694 1_2:+55425708 None:intergenic
AGAAGAAGAGGGGAAGACCA+AGG 0.680559 1_2:-55429345 Msa0078120:CDS
ACATGATGATTAACATGCGG+AGG 0.682437 1_2:+55425711 None:intergenic
GCTTACAGTGAATTCTGGCG+AGG 0.694276 1_2:-55426652 Msa0078120:intron
ACAGCTTTGAAGAAGAAGAG+GGG 0.698390 1_2:-55429355 Msa0078120:CDS
CGTCAATCGACTTCTTCAGG+GGG 0.699414 1_2:-55426371 Msa0078120:CDS
AGAGAATAGAATTCTTAACA+AGG 0.710713 1_2:+55425306 None:intergenic
AGATGAACAAAACAACCACG+TGG 0.758321 1_2:+55425391 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTATTTTTATATTTAA+TGG - chr1_2:55428420-55428439 Msa0078120:intron 0.0%
!!! ATTTTATTTTTATATTTAAT+GGG - chr1_2:55428421-55428440 Msa0078120:intron 0.0%
!!! ATAAATTTTGGTTAATAAAA+TGG + chr1_2:55425222-55425241 None:intergenic 10.0%
!!! AAAATTGAAAGTATAAATTT+TGG + chr1_2:55425234-55425253 None:intergenic 10.0%
!!! AAAATGAATTTTTTTCAAAA+GGG + chr1_2:55425680-55425699 None:intergenic 10.0%
!!! AAAAATGAATTTTTTTCAAA+AGG + chr1_2:55425681-55425700 None:intergenic 10.0%
!! ATGAAAATTATAAGAAAAAA+AGG + chr1_2:55426238-55426257 None:intergenic 10.0%
!! TTAAGTATTATGTAAATTAT+TGG + chr1_2:55427380-55427399 None:intergenic 10.0%
!!! ATAAAGTTGATAAAAAAATG+AGG + chr1_2:55425328-55425347 None:intergenic 15.0%
!! TAAGAAAAAAATACAAACTT+TGG + chr1_2:55425414-55425433 None:intergenic 15.0%
!!! AAATGAATTTTTTTCAAAAG+GGG + chr1_2:55425679-55425698 None:intergenic 15.0%
!!! TTAAGCTAAATTTAGAATTT+TGG - chr1_2:55425760-55425779 Msa0078120:CDS 15.0%
!!! TAAGCTAAATTTAGAATTTT+GGG - chr1_2:55425761-55425780 Msa0078120:CDS 15.0%
!! ATTAAGAACAAGTTAAAATT+TGG + chr1_2:55426898-55426917 None:intergenic 15.0%
!! TGAATGTTAAAAAAAAACAA+AGG + chr1_2:55427208-55427227 None:intergenic 15.0%
!!! TTTATTTTTGTGAACTATAA+AGG - chr1_2:55428478-55428497 Msa0078120:intron 15.0%
!! ATAAAATATGATAAAAGGAA+AGG + chr1_2:55428687-55428706 None:intergenic 15.0%
!!! TCCTTTTATCATATTTTATA+TGG - chr1_2:55428688-55428707 Msa0078120:intron 15.0%
!! ACCATATAAAATATGATAAA+AGG + chr1_2:55428692-55428711 None:intergenic 15.0%
!!! TTATCATATTTTATATGGTA+TGG - chr1_2:55428693-55428712 Msa0078120:intron 15.0%
!!! TAGTTTTTGAATTTCATTTT+TGG - chr1_2:55428770-55428789 Msa0078120:intron 15.0%
!! AATTCTATTCTCTATATATA+TGG - chr1_2:55430008-55430027 Msa0078120:five_prime_UTR 15.0%
!!! AATTTTTTCCAAAATTTCTG+TGG - chr1_2:55425444-55425463 Msa0078120:three_prime_UTR 20.0%
!!! AAGCTAAATTTAGAATTTTG+GGG - chr1_2:55425762-55425781 Msa0078120:CDS 20.0%
!!! TTCTTTGATTTGCATAAAAA+TGG - chr1_2:55425795-55425814 Msa0078120:CDS 20.0%
!! TATGTTGAAAAAATAACAAG+AGG + chr1_2:55426384-55426403 None:intergenic 20.0%
!!! TTTTTGAGTTCTAATTGTTA+TGG - chr1_2:55426434-55426453 Msa0078120:CDS 20.0%
!! TTGTGATAGAGTTTATATTT+AGG - chr1_2:55426511-55426530 Msa0078120:intron 20.0%
!! TGTGATAGAGTTTATATTTA+GGG - chr1_2:55426512-55426531 Msa0078120:intron 20.0%
!! TCTTCTTATAAAGGAAAATA+AGG + chr1_2:55426666-55426685 None:intergenic 20.0%
!!! TACTTTTCTTCTTCTTATAA+AGG + chr1_2:55426675-55426694 None:intergenic 20.0%
!!! TTTTAACTTGTTCTTAATCA+TGG - chr1_2:55426900-55426919 Msa0078120:intron 20.0%
!!! ATTTTTTTGTCTTAATCATC+GGG + chr1_2:55426955-55426974 None:intergenic 20.0%
!!! CATTTTTTTGTCTTAATCAT+CGG + chr1_2:55426956-55426975 None:intergenic 20.0%
!! TAATAACTATGCCAAAAAAA+TGG + chr1_2:55427240-55427259 None:intergenic 20.0%
!!! GTAAAGAATCTTCTAAAATT+AGG - chr1_2:55428122-55428141 Msa0078120:intron 20.0%
!!! CTTTTATATAATGAATGAAC+TGG - chr1_2:55428447-55428466 Msa0078120:intron 20.0%
!! AACTACATAAAATACGTATA+AGG + chr1_2:55428570-55428589 None:intergenic 20.0%
!! ATGTGTGATTTGTGAATTTA+GGG + chr1_2:55425378-55425397 None:intergenic 25.0%
!! TGAAATTACCACAGAAATTT+TGG + chr1_2:55425455-55425474 None:intergenic 25.0%
!!! AATTTTTTGTGTTCTTGCAA+TGG - chr1_2:55425476-55425495 Msa0078120:three_prime_UTR 25.0%
! AAAACGTTTGAATCTTCAAT+GGG - chr1_2:55425731-55425750 Msa0078120:CDS 25.0%
! AGTGGAATTCATTATTATTC+AGG - chr1_2:55426322-55426341 Msa0078120:intron 25.0%
! GTGATAGAGTTTATATTTAG+GGG - chr1_2:55426513-55426532 Msa0078120:intron 25.0%
! TGATAGAGTTTATATTTAGG+GGG - chr1_2:55426514-55426533 Msa0078120:intron 25.0%
! AGTATTGCATTATATGACAA+TGG - chr1_2:55426691-55426710 Msa0078120:CDS 25.0%
! AAATGGTTAGAGTAAATGAA+GGG - chr1_2:55426714-55426733 Msa0078120:CDS 25.0%
! TCTTCTTGTAAAAAATAGAG+TGG - chr1_2:55426979-55426998 Msa0078120:intron 25.0%
!!! TCCATCAGTATTTTAATCAA+AGG - chr1_2:55427020-55427039 Msa0078120:intron 25.0%
!!! TTTTGGTTGCATATAGTATA+AGG - chr1_2:55427077-55427096 Msa0078120:intron 25.0%
! AGAGATTTATAGAACGTATT+AGG - chr1_2:55427113-55427132 Msa0078120:intron 25.0%
!!! TGTTTGTTTTACGAGTTTTT+TGG + chr1_2:55427468-55427487 None:intergenic 25.0%
!!! GGTTTTATTCGTCTAATATT+GGG + chr1_2:55427546-55427565 None:intergenic 25.0%
! TTCAGAAAAATGTGGTATTA+GGG + chr1_2:55427578-55427597 None:intergenic 25.0%
! TTTCAGAAAAATGTGGTATT+AGG + chr1_2:55427579-55427598 None:intergenic 25.0%
! CTAAAAGTTTCAGAAAAATG+TGG + chr1_2:55427586-55427605 None:intergenic 25.0%
! CAAAGATCATTACTTAATAC+TGG - chr1_2:55427711-55427730 Msa0078120:intron 25.0%
! ATGTTGCAAGATAAAGAAAA+GGG + chr1_2:55427746-55427765 None:intergenic 25.0%
! GGTTCTTTAATTGTTTAAGA+GGG - chr1_2:55427891-55427910 Msa0078120:intron 25.0%
!! TCTTTGAAGGTTATGAATTA+AGG - chr1_2:55427925-55427944 Msa0078120:intron 25.0%
! TAATTGTGTTCCATACTTTA+CGG + chr1_2:55427960-55427979 None:intergenic 25.0%
! GTATGGAACACAATTATTTA+TGG - chr1_2:55427964-55427983 Msa0078120:intron 25.0%
! AACACAATTATTTATGGACT+CGG - chr1_2:55427970-55427989 Msa0078120:intron 25.0%
!! TCTAAAATTAGGACCATAAT+AGG - chr1_2:55428133-55428152 Msa0078120:intron 25.0%
! CTAAAATTAGGACCATAATA+GGG - chr1_2:55428134-55428153 Msa0078120:intron 25.0%
! ATTAAATACATGAATTGAGC+TGG - chr1_2:55428215-55428234 Msa0078120:intron 25.0%
! TTTCTATTATTGAAGTCTCT+TGG - chr1_2:55428307-55428326 Msa0078120:intron 25.0%
!! GTAATAAAGAAATTCTAGAG+AGG + chr1_2:55428509-55428528 None:intergenic 25.0%
!! TACGTATTTTATGTAGTTGT+AGG - chr1_2:55428572-55428591 Msa0078120:intron 25.0%
!!! TTGAAGTAAATTATTGACTC+TGG - chr1_2:55428743-55428762 Msa0078120:intron 25.0%
!! CATTTGTTTCTCTATCATAT+TGG - chr1_2:55429017-55429036 Msa0078120:intron 25.0%
! AGAGAATAGAATTCTTAACA+AGG + chr1_2:55430001-55430020 None:intergenic 25.0%
! ATGCTATAATTAAGTGTGAT+TGG - chr1_2:55430031-55430050 Msa0078120:five_prime_UTR 25.0%
!! GATTTGTGAATTTAGGGTTT+TGG + chr1_2:55425372-55425391 None:intergenic 30.0%
! CATGTGTGATTTGTGAATTT+AGG + chr1_2:55425379-55425398 None:intergenic 30.0%
ACTGTTCCAATTCAATTTCT+AGG - chr1_2:55425547-55425566 Msa0078120:CDS 30.0%
TGAAGACCTAGAAATTGAAT+TGG + chr1_2:55425556-55425575 None:intergenic 30.0%
TAACTTCAGAAAACAGAGTT+TGG + chr1_2:55425649-55425668 None:intergenic 30.0%
GAAAACGTTTGAATCTTCAA+TGG - chr1_2:55425730-55425749 Msa0078120:CDS 30.0%
! ATGGAAGAAAGAGAGAATTT+TGG - chr1_2:55425814-55425833 Msa0078120:intron 30.0%
! TAACAACTTGGATTTTTCCA+TGG - chr1_2:55425900-55425919 Msa0078120:intron 30.0%
GATTTCTTCATAGATTCAAC+AGG + chr1_2:55426105-55426124 None:intergenic 30.0%
CTATAAATAATACCTTGCAC+AGG + chr1_2:55426156-55426175 None:intergenic 30.0%
! TGACTGTTACTATGTTTCTA+AGG - chr1_2:55426258-55426277 Msa0078120:intron 30.0%
! TTGAGTTCTAATTGTTATGG+AGG - chr1_2:55426437-55426456 Msa0078120:CDS 30.0%
CTTTGTATTCAGATCTGAAA+AGG + chr1_2:55426568-55426587 None:intergenic 30.0%
!! TATTTTTGTGGTTGAAAGTG+AGG - chr1_2:55426605-55426624 Msa0078120:intron 30.0%
AGGTTGTATTTGTTCTGTTT+AGG - chr1_2:55426625-55426644 Msa0078120:intron 30.0%
GGTTGTATTTGTTCTGTTTA+GGG - chr1_2:55426626-55426645 Msa0078120:intron 30.0%
GCATTATATGACAATGGAAA+TGG - chr1_2:55426697-55426716 Msa0078120:CDS 30.0%
GAAATGGTTAGAGTAAATGA+AGG - chr1_2:55426713-55426732 Msa0078120:CDS 30.0%
ACTATTAGACTCATTCTAGT+TGG + chr1_2:55426741-55426760 None:intergenic 30.0%
ATTATTCAAACCAACCAACA+AGG + chr1_2:55426840-55426859 None:intergenic 30.0%
!! TGTTGGTTGGTTTGAATAAT+AGG - chr1_2:55426840-55426859 Msa0078120:intron 30.0%
TGAATAATAGGCTGCAAAAT+AGG - chr1_2:55426852-55426871 Msa0078120:intron 30.0%
ATTATTAAGAGCAATCTCCT+AGG - chr1_2:55426927-55426946 Msa0078120:intron 30.0%
GCCTTTGATTAAAATACTGA+TGG + chr1_2:55427024-55427043 None:intergenic 30.0%
! AAGTTTGCAGAAGAGATTTT+TGG - chr1_2:55427060-55427079 Msa0078120:intron 30.0%
CATATAGTATAAGGTATGCT+TGG - chr1_2:55427086-55427105 Msa0078120:intron 30.0%
! ATTAAAGTCCCTCATTTTGT+TGG + chr1_2:55427165-55427184 None:intergenic 30.0%
CTCTGAATATAGCATGTTTA+GGG + chr1_2:55427294-55427313 None:intergenic 30.0%
TCTCTGAATATAGCATGTTT+AGG + chr1_2:55427295-55427314 None:intergenic 30.0%
!!! GGGTTTTATTCGTCTAATAT+TGG + chr1_2:55427547-55427566 None:intergenic 30.0%
!!! TTTCTGAAACTTTTAGTTGC+TGG - chr1_2:55427590-55427609 Msa0078120:intron 30.0%
GATGTTGCAAGATAAAGAAA+AGG + chr1_2:55427747-55427766 None:intergenic 30.0%
!! GAATTGTGTGTTGTTTAACA+TGG - chr1_2:55427790-55427809 Msa0078120:intron 30.0%
TTCTATATCTGAACAAGATC+TGG - chr1_2:55427869-55427888 Msa0078120:intron 30.0%
TCTATATCTGAACAAGATCT+GGG - chr1_2:55427870-55427889 Msa0078120:intron 30.0%
GGGTTCTTTAATTGTTTAAG+AGG - chr1_2:55427890-55427909 Msa0078120:intron 30.0%
CTTTAATTGTTTAAGAGGGT+TGG - chr1_2:55427895-55427914 Msa0078120:intron 30.0%
AACAATACATGGCAGTAAAT+TGG + chr1_2:55428163-55428182 None:intergenic 30.0%
GGAGTTAAGACTTTCAAATA+TGG - chr1_2:55428236-55428255 Msa0078120:intron 30.0%
GAAGAAGCTTATGTATCATT+CGG + chr1_2:55428386-55428405 None:intergenic 30.0%
GTATAAGGAAGATCAATTGA+TGG + chr1_2:55428555-55428574 None:intergenic 30.0%
! GTATTTTATGTAGTTGTAGG+TGG - chr1_2:55428575-55428594 Msa0078120:intron 30.0%
TTTATATGGTATGGATCAAG+TGG - chr1_2:55428702-55428721 Msa0078120:intron 30.0%
TAAATGCTAAAATGAGCATG+TGG + chr1_2:55428800-55428819 None:intergenic 30.0%
CATATAAACGAAGGACTTTA+TGG + chr1_2:55429051-55429070 None:intergenic 30.0%
CATATAATACAAGACAGACA+TGG + chr1_2:55429077-55429096 None:intergenic 30.0%
!!! AATTTTGAGTTTCCCTTCTA+TGG - chr1_2:55429135-55429154 Msa0078120:intron 30.0%
GTGTCTAATGAAGTAAGTTT+CGG - chr1_2:55429614-55429633 Msa0078120:five_prime_UTR 30.0%
GTTTAGTGTTAGATGTTAGT+TGG - chr1_2:55429878-55429897 Msa0078120:five_prime_UTR 30.0%
TCATTGTAGCAAATAGATGT+AGG - chr1_2:55429953-55429972 Msa0078120:five_prime_UTR 30.0%
CATTGTAGCAAATAGATGTA+GGG - chr1_2:55429954-55429973 Msa0078120:five_prime_UTR 30.0%
TCAAGTTATTCTGTTGTGAA+TGG - chr1_2:55430079-55430098 Msa0078120:five_prime_UTR 30.0%
!! ATTTAGGGTTTTGGTGGAAA+AGG + chr1_2:55425363-55425382 None:intergenic 35.0%
!! TTGTGAATTTAGGGTTTTGG+TGG + chr1_2:55425369-55425388 None:intergenic 35.0%
! TCACAATACTGCGATTTTCT+CGG - chr1_2:55425512-55425531 Msa0078120:three_prime_UTR 35.0%
GTTTGAATCTTCAATGGGTA+GGG - chr1_2:55425736-55425755 Msa0078120:CDS 35.0%
! TCCAAGGATTGATAACAACT+TGG - chr1_2:55425888-55425907 Msa0078120:intron 35.0%
TCCAAGTTGTTATCAATCCT+TGG + chr1_2:55425892-55425911 None:intergenic 35.0%
TAAATAATACCTTGCACAGG+TGG + chr1_2:55426153-55426172 None:intergenic 35.0%
!! CAGTTTTTGAGAAATGAGAG+TGG - chr1_2:55426304-55426323 Msa0078120:intron 35.0%
TAGAGTTTATATTTAGGGGG+TGG - chr1_2:55426517-55426536 Msa0078120:intron 35.0%
AGAGTTTATATTTAGGGGGT+GGG - chr1_2:55426518-55426537 Msa0078120:intron 35.0%
TGAAAAGGAATCTCAGCTAA+GGG + chr1_2:55426553-55426572 None:intergenic 35.0%
AGATCTGAATACAAAGTGTG+AGG - chr1_2:55426572-55426591 Msa0078120:intron 35.0%
CATCTTACTAATCACCTTGT+TGG - chr1_2:55426823-55426842 Msa0078120:intron 35.0%
TTACTAATCACCTTGTTGGT+TGG - chr1_2:55426827-55426846 Msa0078120:intron 35.0%
AATAGAGTGGTCTCTTAGAA+TGG - chr1_2:55426992-55427011 Msa0078120:intron 35.0%
GAAATTTCTGTGTGAAGAAG+AGG - chr1_2:55427138-55427157 Msa0078120:intron 35.0%
!!! CACATGTTCTGCCATTTTTT+TGG - chr1_2:55427226-55427245 Msa0078120:intron 35.0%
! GTGGTATTAGGGATGTTTTA+GGG + chr1_2:55427567-55427586 None:intergenic 35.0%
! TGTGGTATTAGGGATGTTTT+AGG + chr1_2:55427568-55427587 None:intergenic 35.0%
! TATTTATGGACTCGGTTATG+TGG - chr1_2:55427978-55427997 Msa0078120:intron 35.0%
AAATTAGGACCATAATAGGG+TGG - chr1_2:55428137-55428156 Msa0078120:intron 35.0%
AAAGGATGAGGTAGATTTGA+AGG + chr1_2:55428348-55428367 None:intergenic 35.0%
! CTACCTCATCCTTTAAAAGA+TGG - chr1_2:55428354-55428373 Msa0078120:intron 35.0%
!! GATCCATCTTTTAAAGGATG+AGG + chr1_2:55428360-55428379 None:intergenic 35.0%
ATCAATTGATGGAGAAAGAC+AGG + chr1_2:55428544-55428563 None:intergenic 35.0%
! TTTTATGTAGTTGTAGGTGG+AGG - chr1_2:55428578-55428597 Msa0078120:intron 35.0%
TATGTGCTTACAGTGAATTC+TGG - chr1_2:55428647-55428666 Msa0078120:intron 35.0%
! TTGGGAGGACATAATTTTCA+TGG + chr1_2:55428853-55428872 None:intergenic 35.0%
AAAATTATGTCCTCCCAACA+AGG - chr1_2:55428855-55428874 Msa0078120:intron 35.0%
! AACATTTGAAATTGTGCCAG+TGG + chr1_2:55428907-55428926 None:intergenic 35.0%
TAAACTCACCTCATACGTTA+AGG + chr1_2:55428961-55428980 None:intergenic 35.0%
TCACTAACTCCATACTGAAT+CGG - chr1_2:55429165-55429184 Msa0078120:CDS 35.0%
!! TATGTAACACCGATTCAGTA+TGG + chr1_2:55429177-55429196 None:intergenic 35.0%
TCATTTATGCCCTTGTTGAA+TGG - chr1_2:55429209-55429228 Msa0078120:CDS 35.0%
CCTGTAATTCCATTCAACAA+GGG + chr1_2:55429221-55429240 None:intergenic 35.0%
CCTTGTTGAATGGAATTACA+GGG - chr1_2:55429219-55429238 Msa0078120:CDS 35.0%
CTTGTTGAATGGAATTACAG+GGG - chr1_2:55429220-55429239 Msa0078120:CDS 35.0%
! TTTGAGATTCTTTCCTTGTC+TGG - chr1_2:55429246-55429265 Msa0078120:CDS 35.0%
CTTGTAATTCCATTCTCAGT+TGG + chr1_2:55429282-55429301 None:intergenic 35.0%
CACTATGTTGTGCATTCATT+AGG - chr1_2:55429472-55429491 Msa0078120:CDS 35.0%
GACACATGATGATTAACATG+CGG + chr1_2:55429599-55429618 None:intergenic 35.0%
TCTAATGAAGTAAGTTTCGG+TGG - chr1_2:55429617-55429636 Msa0078120:five_prime_UTR 35.0%
!!! TTAGAGTCCTTTTCAGGTAA+AGG + chr1_2:55429749-55429768 None:intergenic 35.0%
! CTATGATTAGAGTCCTTTTC+AGG + chr1_2:55429755-55429774 None:intergenic 35.0%
GCTGTCAAAATTAACTTACC+AGG - chr1_2:55429819-55429838 Msa0078120:five_prime_UTR 35.0%
CGTTTGAATCTTCAATGGGT+AGG - chr1_2:55425735-55425754 Msa0078120:CDS 40.0%
!!! TTTTGGTGCTGTGAATGTAG+TGG - chr1_2:55425831-55425850 Msa0078120:intron 40.0%
!! TTTGGTGCTGTGAATGTAGT+GGG - chr1_2:55425832-55425851 Msa0078120:intron 40.0%
! CTTGGATTTTTCCATGGCAA+CGG - chr1_2:55425906-55425925 Msa0078120:intron 40.0%
TTCTTCTTCAAAGCTGTCTC+CGG + chr1_2:55425946-55425965 None:intergenic 40.0%
!! AGACAGCTTTGAAGAAGAAG+AGG - chr1_2:55425947-55425966 Msa0078120:CDS 40.0%
!! GACAGCTTTGAAGAAGAAGA+GGG - chr1_2:55425948-55425967 Msa0078120:CDS 40.0%
!! ACAGCTTTGAAGAAGAAGAG+GGG - chr1_2:55425949-55425968 Msa0078120:CDS 40.0%
AACGGAATCGACGATGAAAT+CGG + chr1_2:55426042-55426061 None:intergenic 40.0%
AGAGTTCTCAGCTTGGAAAA+GGG - chr1_2:55426068-55426087 Msa0078120:intron 40.0%
GAGTTTATATTTAGGGGGTG+GGG - chr1_2:55426519-55426538 Msa0078120:intron 40.0%
AGTTTATATTTAGGGGGTGG+GGG - chr1_2:55426520-55426539 Msa0078120:intron 40.0%
CTGAAAAGGAATCTCAGCTA+AGG + chr1_2:55426554-55426573 None:intergenic 40.0%
TCTGAATACAAAGTGTGAGG+TGG - chr1_2:55426575-55426594 Msa0078120:intron 40.0%
!! GGTGGATGTGGATATTTTTG+TGG - chr1_2:55426593-55426612 Msa0078120:intron 40.0%
AGAAGAGGACCAACAAAATG+AGG - chr1_2:55427153-55427172 Msa0078120:intron 40.0%
GAAGAGGACCAACAAAATGA+GGG - chr1_2:55427154-55427173 Msa0078120:intron 40.0%
! ATTGGAAGTATGTAGCAGAG+CGG + chr1_2:55427667-55427686 None:intergenic 40.0%
CTGCTACATACTTCCAATAG+TGG - chr1_2:55427669-55427688 Msa0078120:intron 40.0%
AATGATCTTTGTCCCTTCTC+CGG + chr1_2:55427702-55427721 None:intergenic 40.0%
ACATCCAAGTAAGACGAATG+CGG - chr1_2:55427762-55427781 Msa0078120:intron 40.0%
TCCATACTTTACGGCTTTCT+GGG + chr1_2:55427951-55427970 None:intergenic 40.0%
TTCCATACTTTACGGCTTTC+TGG + chr1_2:55427952-55427971 None:intergenic 40.0%
CTGCACTATGTCATAGTATG+TGG - chr1_2:55428019-55428038 Msa0078120:intron 40.0%
TGACTACACAATGTTGATCC+AGG - chr1_2:55428096-55428115 Msa0078120:intron 40.0%
GACTACACAATGTTGATCCA+GGG - chr1_2:55428097-55428116 Msa0078120:intron 40.0%
TAGAAGATTCTTTACTGCCC+TGG + chr1_2:55428117-55428136 None:intergenic 40.0%
GTAAATTGGCCACCCTATTA+TGG + chr1_2:55428149-55428168 None:intergenic 40.0%
TCACACATCGCAACAATACA+TGG + chr1_2:55428174-55428193 None:intergenic 40.0%
ATGTATTGTTGCGATGTGTG+AGG - chr1_2:55428173-55428192 Msa0078120:intron 40.0%
! CGGTCAGATCCATCTTTTAA+AGG + chr1_2:55428366-55428385 None:intergenic 40.0%
AAGCACATAAGCTGTGAAGT+TGG + chr1_2:55428636-55428655 None:intergenic 40.0%
! GATTTTCTATGCTCTGTCTC+AGG - chr1_2:55428821-55428840 Msa0078120:intron 40.0%
TATTGCACGTGATCCTTGTT+GGG + chr1_2:55428871-55428890 None:intergenic 40.0%
ATATTGCACGTGATCCTTGT+TGG + chr1_2:55428872-55428891 None:intergenic 40.0%
ATATGTATTCTCTCTGCCAC+TGG - chr1_2:55428888-55428907 Msa0078120:intron 40.0%
! TTCGTCAATCGACTTCTTCA+GGG - chr1_2:55428931-55428950 Msa0078120:intron 40.0%
ACATGGCTGCATATAAACGA+AGG + chr1_2:55429060-55429079 None:intergenic 40.0%
! AGTGAGTCGATTCCATAGAA+GGG + chr1_2:55429150-55429169 None:intergenic 40.0%
! TAGTGAGTCGATTCCATAGA+AGG + chr1_2:55429151-55429170 None:intergenic 40.0%
CCCTTGTTGAATGGAATTAC+AGG - chr1_2:55429218-55429237 Msa0078120:CDS 40.0%
CCCTGTAATTCCATTCAACA+AGG + chr1_2:55429222-55429241 None:intergenic 40.0%
TCCTTTATGCCAACTGAGAA+TGG - chr1_2:55429270-55429289 Msa0078120:CDS 40.0%
TCCATTCTCAGTTGGCATAA+AGG + chr1_2:55429274-55429293 None:intergenic 40.0%
GGAATTACAAGAAGCAGATC+TGG - chr1_2:55429291-55429310 Msa0078120:CDS 40.0%
ATTACAAGAAGCAGATCTGG+TGG - chr1_2:55429294-55429313 Msa0078120:CDS 40.0%
TTACAAGAAGCAGATCTGGT+GGG - chr1_2:55429295-55429314 Msa0078120:CDS 40.0%
TGCATTCATTAGGTCGTTGT+GGG - chr1_2:55429482-55429501 Msa0078120:CDS 40.0%
ACATGATGATTAACATGCGG+AGG + chr1_2:55429596-55429615 None:intergenic 40.0%
! AATGCAGCAGGTGTCATAAA+AGG + chr1_2:55429650-55429669 None:intergenic 40.0%
TTCTCTTCTTGAAATGCAGC+AGG + chr1_2:55429662-55429681 None:intergenic 40.0%
ACAACAATGCTCAAGACTCT+AGG - chr1_2:55429696-55429715 Msa0078120:five_prime_UTR 40.0%
CAGAGATCCTTTACCTGAAA+AGG - chr1_2:55429739-55429758 Msa0078120:five_prime_UTR 40.0%
! ACAGCATCAGTAAAAGCATG+AGG + chr1_2:55429804-55429823 None:intergenic 40.0%
AACTTACCAGGACAGAATTG+TGG - chr1_2:55429831-55429850 Msa0078120:five_prime_UTR 40.0%
!!! TGGTTTGTTAGTTTTCCACG+TGG - chr1_2:55429898-55429917 Msa0078120:five_prime_UTR 40.0%
AGATGAACAAAACAACCACG+TGG + chr1_2:55429916-55429935 None:intergenic 40.0%
AAAATGGTTCACGTCCGTCT+TGG + chr1_2:55425206-55425225 None:intergenic 45.0%
!! GAATGTAGTGGGTGGTAATG+AGG - chr1_2:55425843-55425862 Msa0078120:intron 45.0%
ATCGACGATGAAATCGGCAT+AGG + chr1_2:55426036-55426055 None:intergenic 45.0%
GAGAGTTCTCAGCTTGGAAA+AGG - chr1_2:55426067-55426086 Msa0078120:CDS 45.0%
GAGTTCTCAGCTTGGAAAAG+GGG - chr1_2:55426069-55426088 Msa0078120:intron 45.0%
TTTGAAAGTCCACCTGTGCA+AGG - chr1_2:55426141-55426160 Msa0078120:intron 45.0%
GTTTATATTTAGGGGGTGGG+GGG - chr1_2:55426521-55426540 Msa0078120:intron 45.0%
TACAAAGTGTGAGGTGGATG+TGG - chr1_2:55426581-55426600 Msa0078120:intron 45.0%
! GCTAGTTTGTCGTGTAGAAC+TGG - chr1_2:55426765-55426784 Msa0078120:intron 45.0%
GTCTTAATCATCGGGTTCCT+AGG + chr1_2:55426947-55426966 None:intergenic 45.0%
TTTAGAGGCCAAAATGGCAG+TGG + chr1_2:55427618-55427637 None:intergenic 45.0%
!!! TGCCATTTTGGCCTCTAAAG+TGG - chr1_2:55427619-55427638 Msa0078120:intron 45.0%
!!! GCCATTTTGGCCTCTAAAGT+GGG - chr1_2:55427620-55427639 Msa0078120:intron 45.0%
ATACTTCCAATAGTGGCCAG+TGG - chr1_2:55427676-55427695 Msa0078120:intron 45.0%
ATGTCCGCATTCGTCTTACT+TGG + chr1_2:55427769-55427788 None:intergenic 45.0%
! TGCATGTGAACATGCTGACT+TGG - chr1_2:55427842-55427861 Msa0078120:intron 45.0%
GAGGGAATTGCATACTCAGT+AGG - chr1_2:55428608-55428627 Msa0078120:intron 45.0%
! CTTCGTCAATCGACTTCTTC+AGG - chr1_2:55428930-55428949 Msa0078120:intron 45.0%
! TCGTCAATCGACTTCTTCAG+GGG - chr1_2:55428932-55428951 Msa0078120:intron 45.0%
GTTGAATGGAATTACAGGGG+CGG - chr1_2:55429223-55429242 Msa0078120:CDS 45.0%
TGGCATAAAGGAACCAGACA+AGG + chr1_2:55429262-55429281 None:intergenic 45.0%
!! GCTGGTTTGCTTATAGCTTC+CGG - chr1_2:55429369-55429388 Msa0078120:CDS 45.0%
TACTCCAGAGTTTACCTGCA+CGG + chr1_2:55429397-55429416 None:intergenic 45.0%
ATGCACAACATAGTGCGTGT+TGG + chr1_2:55429467-55429486 None:intergenic 45.0%
GTGCATTCATTAGGTCGTTG+TGG - chr1_2:55429481-55429500 Msa0078120:CDS 45.0%
! GTTGTGGGAAGTTTTCTTCC+TGG - chr1_2:55429497-55429516 Msa0078120:exon 45.0%
! TTTTCTTCCTGGTCACCATC+TGG - chr1_2:55429508-55429527 Msa0078120:exon 45.0%
!!! TCTTGCTGTTTTGCTCCAGA+TGG + chr1_2:55429526-55429545 None:intergenic 45.0%
AGCAAAACAGCAAGAAGCAG+AGG - chr1_2:55429531-55429550 Msa0078120:five_prime_UTR 45.0%
GCAAAACAGCAAGAAGCAGA+GGG - chr1_2:55429532-55429551 Msa0078120:five_prime_UTR 45.0%
TGATGATTAACATGCGGAGG+AGG + chr1_2:55429593-55429612 None:intergenic 45.0%
ATCTCTGTCTTCAGCAGATG+AGG + chr1_2:55429726-55429745 None:intergenic 45.0%
AGACAACCACAATTCTGTCC+TGG + chr1_2:55429840-55429859 None:intergenic 45.0%
!! AAATAAAGTAATTAAATATT+CGG + chr1_2:55425287-55425306 None:intergenic 5.0%
TGAGCTTTCAAGCTGCTCCA+AGG - chr1_2:55425872-55425891 Msa0078120:intron 50.0%
! TTTTTCCATGGCAACGGTGC+CGG - chr1_2:55425912-55425931 Msa0078120:intron 50.0%
AGAAGAAGAGGGGAAGACCA+AGG - chr1_2:55425959-55425978 Msa0078120:CDS 50.0%
AGGGGAAGACCAAGGAAGTA+TGG - chr1_2:55425967-55425986 Msa0078120:CDS 50.0%
CCATCTGGACCATACTTCCT+TGG + chr1_2:55425979-55425998 None:intergenic 50.0%
! CCAAGGAAGTATGGTCCAGA+TGG - chr1_2:55425976-55425995 Msa0078120:CDS 50.0%
!! TCATCGTCGATTCCGTTGAC+TGG - chr1_2:55426045-55426064 Msa0078120:CDS 50.0%
GCTGAGAACTCTCCAGTCAA+CGG + chr1_2:55426060-55426079 None:intergenic 50.0%
TGACTGGAGAGTTCTCAGCT+TGG - chr1_2:55426061-55426080 Msa0078120:CDS 50.0%
TCAGCTTGGAAAAGGGGTAG+AGG - chr1_2:55426075-55426094 Msa0078120:intron 50.0%
CAGCTTGGAAAAGGGGTAGA+GGG - chr1_2:55426076-55426095 Msa0078120:intron 50.0%
! TCCATGATAGCGACGCATAG+TGG - chr1_2:55427264-55427283 Msa0078120:intron 50.0%
!! TGCTGGAACCACTGCCATTT+TGG - chr1_2:55427607-55427626 Msa0078120:intron 50.0%
! GCCCACTTTAGAGGCCAAAA+TGG + chr1_2:55427624-55427643 None:intergenic 50.0%
GGTTGGCACTCTGTCTTTGA+AGG - chr1_2:55427912-55427931 Msa0078120:intron 50.0%
GCCCAGAAAGCCGTAAAGTA+TGG - chr1_2:55427947-55427966 Msa0078120:intron 50.0%
! TGTAGGTGGAGGTGTAAGTG+AGG - chr1_2:55428589-55428608 Msa0078120:intron 50.0%
! GTAGGTGGAGGTGTAAGTGA+GGG - chr1_2:55428590-55428609 Msa0078120:intron 50.0%
GCTTACAGTGAATTCTGGCG+AGG - chr1_2:55428652-55428671 Msa0078120:intron 50.0%
! CGTCAATCGACTTCTTCAGG+GGG - chr1_2:55428933-55428952 Msa0078120:intron 50.0%
!! AGGGGGTACCTTAACGTATG+AGG - chr1_2:55428950-55428969 Msa0078120:intron 50.0%
TGGTGGGATGAGTGTCTCTT+TGG - chr1_2:55429311-55429330 Msa0078120:CDS 50.0%
ACTCCAGAGTTTACCTGCAC+GGG + chr1_2:55429396-55429415 None:intergenic 50.0%
!! GTGCAGGTAAACTCTGGAGT+AGG - chr1_2:55429396-55429415 Msa0078120:CDS 50.0%
! TTTTGCTCCAGATGGTGACC+AGG + chr1_2:55429518-55429537 None:intergenic 50.0%
AAACAGCAAGAAGCAGAGGG+TGG - chr1_2:55429535-55429554 Msa0078120:five_prime_UTR 50.0%
! GGTGCTGTGAATGTAGTGGG+TGG - chr1_2:55425835-55425854 Msa0078120:intron 55.0%
GGAGCAGCTTGAAAGCTCAC+AGG + chr1_2:55425871-55425890 None:intergenic 55.0%
GCCACTATGCGTCGCTATCA+TGG + chr1_2:55427268-55427287 None:intergenic 55.0%
CGCTGTTGTGCCCACTTTAG+AGG + chr1_2:55427633-55427652 None:intergenic 55.0%
TTCCAATAGTGGCCAGTGGC+CGG - chr1_2:55427680-55427699 Msa0078120:intron 55.0%
TGCACGTGATCCTTGTTGGG+AGG + chr1_2:55428868-55428887 None:intergenic 55.0%
GGGATGAGTGTCTCTTTGGC+AGG - chr1_2:55429315-55429334 Msa0078120:CDS 55.0%
CACCCAATACTCGGCCATCT+GGG + chr1_2:55429341-55429360 None:intergenic 55.0%
CGAGTCCACCACCCAATACT+CGG + chr1_2:55429350-55429369 None:intergenic 55.0%
AGAGTTTACCTGCACGGGAC+CGG + chr1_2:55429391-55429410 None:intergenic 55.0%
CCAGGAGCAGGCTTACCATC+TGG + chr1_2:55425994-55426013 None:intergenic 60.0%
CCAGATGGTAAGCCTGCTCC+TGG - chr1_2:55425991-55426010 Msa0078120:CDS 60.0%
! GAAAGCGCAGTCACAGCTCC+AGG + chr1_2:55426012-55426031 None:intergenic 60.0%
TATTTAGGGGGTGGGGGGAG+TGG - chr1_2:55426526-55426545 Msa0078120:intron 60.0%
TTTGTCCCTTCTCCGGCCAC+TGG + chr1_2:55427695-55427714 None:intergenic 60.0%
GTCTCTTTGGCAGGCCCAGA+TGG - chr1_2:55429324-55429343 Msa0078120:CDS 60.0%
AGGCCCAGATGGCCGAGTAT+TGG - chr1_2:55429335-55429354 Msa0078120:CDS 60.0%
GGCCCAGATGGCCGAGTATT+GGG - chr1_2:55429336-55429355 Msa0078120:CDS 60.0%
CCACCCAATACTCGGCCATC+TGG + chr1_2:55429342-55429361 None:intergenic 60.0%
!! CCAGATGGCCGAGTATTGGG+TGG - chr1_2:55429339-55429358 Msa0078120:CDS 60.0%
!! GATGGCCGAGTATTGGGTGG+TGG - chr1_2:55429342-55429361 Msa0078120:CDS 60.0%
!! GTATTGGGTGGTGGACTCGC+TGG - chr1_2:55429351-55429370 Msa0078120:CDS 60.0%
TATAGCTTCCGGTCCCGTGC+AGG - chr1_2:55429380-55429399 Msa0078120:CDS 60.0%
GGTCCCGTGCAGGTAAACTC+TGG - chr1_2:55429390-55429409 Msa0078120:CDS 60.0%
!! AACGGTGCCGGTGTCGTTGC+CGG - chr1_2:55425924-55425943 Msa0078120:intron 65.0%
GCTGTCTCCGGCAACGACAC+CGG + chr1_2:55425934-55425953 None:intergenic 65.0%
GCAGTCACAGCTCCAGGAGC+AGG + chr1_2:55426006-55426025 None:intergenic 65.0%
CTCCGGCCACTGGCCACTAT+TGG + chr1_2:55427685-55427704 None:intergenic 65.0%
TAGTGGCCAGTGGCCGGAGA+AGG - chr1_2:55427686-55427705 Msa0078120:intron 65.0%
AGTGGCCAGTGGCCGGAGAA+GGG - chr1_2:55427687-55427706 Msa0078120:intron 65.0%
CGACACCGGCACCGTTGCCA+TGG + chr1_2:55425920-55425939 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55425203 55430123 55425203 ID=Msa0078120;Name=Msa0078120
chr1_2 mRNA 55425203 55430123 55425203 ID=Msa0078120-mRNA-1;Parent=Msa0078120;Name=Msa0078120-mRNA-1;_AED=0.06;_eAED=0.06;_QI=611|1|1|1|1|1|5|333|340
chr1_2 exon 55425203 55425832 55425203 ID=Msa0078120-mRNA-1:exon:17254;Parent=Msa0078120-mRNA-1
chr1_2 exon 55425925 55426086 55425925 ID=Msa0078120-mRNA-1:exon:17253;Parent=Msa0078120-mRNA-1
chr1_2 exon 55426355 55426483 55426355 ID=Msa0078120-mRNA-1:exon:17252;Parent=Msa0078120-mRNA-1
chr1_2 exon 55426653 55426738 55426653 ID=Msa0078120-mRNA-1:exon:17251;Parent=Msa0078120-mRNA-1
chr1_2 exon 55429164 55430123 55429164 ID=Msa0078120-mRNA-1:exon:17250;Parent=Msa0078120-mRNA-1
chr1_2 five_prime_UTR 55429513 55430123 55429513 ID=Msa0078120-mRNA-1:five_prime_utr;Parent=Msa0078120-mRNA-1
chr1_2 CDS 55429164 55429512 55429164 ID=Msa0078120-mRNA-1:cds;Parent=Msa0078120-mRNA-1
chr1_2 CDS 55426653 55426738 55426653 ID=Msa0078120-mRNA-1:cds;Parent=Msa0078120-mRNA-1
chr1_2 CDS 55426355 55426483 55426355 ID=Msa0078120-mRNA-1:cds;Parent=Msa0078120-mRNA-1
chr1_2 CDS 55425925 55426086 55425925 ID=Msa0078120-mRNA-1:cds;Parent=Msa0078120-mRNA-1
chr1_2 CDS 55425536 55425832 55425536 ID=Msa0078120-mRNA-1:cds;Parent=Msa0078120-mRNA-1
chr1_2 three_prime_UTR 55425203 55425535 55425203 ID=Msa0078120-mRNA-1:three_prime_utr;Parent=Msa0078120-mRNA-1
Gene Sequence

>Msa0078120

ATGGAAGAAAGAGAGAATTTTGGTGCTGTGAATGTAGTGGGTGGTAATGAGGTTCCTGTGAGCTTTCAAGCTGCTCCAAGGATTGATAACAACTTGGATTTTTCCATGGCAACGGTGCCGGTGTCGTTGCCGGAGACAGCTTTGAAGAAGAAGAGGGGAAGACCAAGGAAGTATGGTCCAGATGGTAAGCCTGCTCCTGGAGCTGTGACTGCGCTTTCGCCTATGCCGATTTCATCGTCGATTCCGTTGACTGGAGAGTTCTCAGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATGAAGAAATCATCTTTTAAGTTTGATTTTGAAAGTCCACCTGTGCAAGTTGTAGGTGGAGGTGTAAGTGAGGGAATTGCATACTCAGTAGGTGCCAACTTCACAGCTTATGTGCTTACAGTGAATTCTGGCGAGGATGTTACCATGAAAATTATGTCCTCCCAACAAGGATCACGTGCAATATGTATTCTCTCTGCCACTGGCACAATTTCAAATGTTACACTTCGTCAATCGACTTCTTCAGGGGGTACCTTAACGTATGAGGGGCGGTTTGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGAGAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGCCCAGATGGCCGAGTATTGGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCCGGTCCCGTGCAGGTCGTTGTGGGAAGTTTTCTTCCTGGTCACCATCTGGAGCAAAACAGCAAGAAGCAGAGGGTGGAGCATAATATATCGACTATTACACATAATAATCCTCCTCCGCATGTTAATCATCATGTGTCTAATGAAGTAAGTTTCGGTGGAGTGAAGCCTTTTATGACACCTGCTGCATTTCAAGAAGAGAATATTGTTTCTTTCAACAACAATGCTCAAGACTCTAGGAACACCTCATCTGCTGAAGACAGAGATCCTTTACCTGAAAAGGACTCTAATCATAGTCAATCAACTACTTGA
Protein sequence

>Msa0078120

MEERENFGAVNVVGGNEVPVSFQAAPRIDNNLDFSMATVPVSLPETALKKKRGRPRKYGPDGKPAPGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESMKKSSFKFDFESPPVQVVGGGVSEGIAYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTENGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPGHHLEQNSKKQRVEHNISTITHNNPPPHVNHHVSNEVSFGGVKPFMTPAAFQEENIVSFNNNAQDSRNTSSAEDRDPLPEKDSNHSQSTT*