Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057380 | G7I4B0 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0057380 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008210 | Msa0057380 | 0.989653 | 4.682359e-179 | -8.615850e-47 |
| Msa0030700 | Msa0057380 | 0.809258 | 2.067591e-50 | -8.615850e-47 |
| Msa0057380 | Msa0078120 | 0.823306 | 1.487052e-53 | -8.615850e-47 |
| Msa0057380 | Msa0149430 | 0.988952 | 4.428424e-176 | -8.615850e-47 |
| Msa0057380 | Msa0236420 | 0.806469 | 8.103841e-50 | -8.615850e-47 |
| Msa0057380 | Msa0241140 | 0.808596 | 2.865637e-50 | -8.615850e-47 |
| Msa0057380 | Msa0270960 | 0.806603 | 7.592578e-50 | -8.615850e-47 |
| Msa0057380 | Msa0278580 | 0.840788 | 7.042141e-58 | -8.615850e-47 |
| Msa0057380 | Msa0287870 | 0.810212 | 1.289666e-50 | -8.615850e-47 |
| Msa0057380 | Msa0317960 | 0.824307 | 8.663213e-54 | -8.615850e-47 |
| Msa0057380 | Msa0388730 | 0.803331 | 3.667790e-49 | -8.615850e-47 |
| Msa0057380 | Msa0432160 | 0.813954 | 1.970667e-51 | -8.615850e-47 |
| Msa0057380 | Msa0476680 | 0.821195 | 4.595045e-53 | -8.615850e-47 |
| Msa0057380 | Msa0521010 | 0.818720 | 1.692037e-52 | -8.615850e-47 |
| Msa0057380 | Msa0545050 | 0.800813 | 1.208490e-48 | -8.615850e-47 |
| Msa0057380 | Msa0600590 | 0.805976 | 1.029222e-49 | -8.615850e-47 |
| Msa0057380 | Msa0641130 | 0.804250 | 2.364288e-49 | -8.615850e-47 |
| Msa0057380 | Msa0689430 | 0.986883 | 2.664322e-168 | -8.615850e-47 |
| Msa0057380 | Msa0709270 | 0.817525 | 3.151850e-52 | -8.615850e-47 |
| Msa0057380 | Msa0733010 | 0.807452 | 5.020684e-50 | -8.615850e-47 |
| Msa0057380 | Msa0743930 | 0.807757 | 4.324813e-50 | -8.615850e-47 |
| Msa0057380 | Msa0855870 | 0.805400 | 1.359520e-49 | -8.615850e-47 |
| Msa0057380 | Msa0965080 | 0.805054 | 1.606609e-49 | -8.615850e-47 |
| Msa0057380 | Msa0965290 | 0.811777 | 5.908744e-51 | -8.615850e-47 |
| Msa0057380 | Msa0999680 | 0.813375 | 2.642882e-51 | -8.615850e-47 |
| Msa0057380 | Msa1048220 | 0.811108 | 8.255636e-51 | -8.615850e-47 |
| Msa0057380 | Msa1089460 | 0.834290 | 3.264918e-56 | -8.615850e-47 |
| Msa0057380 | Msa1122150 | 0.817939 | 2.542384e-52 | -8.615850e-47 |
| Msa0057380 | Msa1160560 | 0.821677 | 3.555720e-53 | -8.615850e-47 |
| Msa0057380 | Msa1226460 | 0.826084 | 3.293548e-54 | -8.615850e-47 |
| Msa0057380 | Msa1238600 | 0.800284 | 1.549018e-48 | -8.615850e-47 |
| Msa0057380 | Msa1346840 | 0.816118 | 6.519860e-52 | -8.615850e-47 |
| Msa0057380 | Msa1368360 | 0.807867 | 4.097168e-50 | -8.615850e-47 |
| Msa0057380 | Msa1369920 | -0.835265 | 1.855993e-56 | -8.615850e-47 |
| Msa0057380 | Msa1393570 | 0.805569 | 1.253122e-49 | -8.615850e-47 |
| Msa0057380 | Msa1419840 | 0.819289 | 1.255903e-52 | -8.615850e-47 |
| Msa0057380 | Msa1442920 | 0.812779 | 3.571050e-51 | -8.615850e-47 |
| Msa0057380 | Msa1452710 | 0.803066 | 4.161712e-49 | -8.615850e-47 |
| Msa0057380 | Msa1458680 | 0.804729 | 1.877966e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057380 | MtrunA17_Chr1g0147111 | 89.362 | 282 | 6 | 2 | 1 | 258 | 1 | 282 | 0.0 | 509 |
| Msa0057380 | MtrunA17_Chr3g0126721 | 66.192 | 281 | 63 | 6 | 1 | 254 | 1 | 276 | 2.22e-114 | 329 |
| Msa0057380 | MtrunA17_Chr8g0387241 | 51.429 | 70 | 32 | 1 | 185 | 252 | 200 | 269 | 3.06e-17 | 79.7 |
| Msa0057380 | MtrunA17_Chr1g0168401 | 64.583 | 48 | 17 | 0 | 206 | 253 | 317 | 364 | 4.87e-16 | 77.0 |
| Msa0057380 | MtrunA17_Chr1g0186171 | 57.143 | 56 | 24 | 0 | 198 | 253 | 306 | 361 | 5.34e-16 | 77.0 |
| Msa0057380 | MtrunA17_Chr4g0030421 | 58.000 | 50 | 21 | 0 | 204 | 253 | 31 | 80 | 9.73e-16 | 72.0 |
| Msa0057380 | MtrunA17_Chr5g0397361 | 50.000 | 70 | 34 | 1 | 186 | 254 | 150 | 219 | 6.52e-15 | 72.4 |
| Msa0057380 | MtrunA17_Chr2g0327621 | 56.863 | 51 | 22 | 0 | 206 | 256 | 153 | 203 | 7.64e-15 | 72.0 |
| Msa0057380 | MtrunA17_Chr2g0311591 | 53.061 | 49 | 23 | 0 | 204 | 252 | 166 | 214 | 7.43e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057380 | AT4G27900.1 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0057380 | AT4G27900.2 | 50.000 | 268 | 110 | 8 | 1 | 253 | 1 | 259 | 2.12e-73 | 225 |
| Msa0057380 | AT5G53420.1 | 44.649 | 271 | 122 | 8 | 1 | 252 | 1 | 262 | 1.60e-69 | 215 |
| Msa0057380 | AT5G53420.2 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0057380 | AT5G53420.5 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0057380 | AT5G53420.4 | 47.917 | 192 | 73 | 7 | 79 | 252 | 1 | 183 | 4.14e-49 | 160 |
| Msa0057380 | AT5G53420.3 | 36.538 | 208 | 107 | 6 | 1 | 192 | 1 | 199 | 1.28e-33 | 121 |
| Msa0057380 | AT5G41380.1 | 55.932 | 59 | 26 | 0 | 195 | 253 | 202 | 260 | 6.91e-17 | 79.0 |
| Msa0057380 | AT1G04500.4 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0057380 | AT1G04500.1 | 38.583 | 127 | 62 | 4 | 139 | 253 | 211 | 333 | 1.22e-16 | 79.0 |
| Msa0057380 | AT1G04500.3 | 38.583 | 127 | 62 | 4 | 139 | 253 | 202 | 324 | 1.32e-16 | 79.0 |
| Msa0057380 | AT1G63820.1 | 62.000 | 50 | 19 | 0 | 204 | 253 | 188 | 237 | 1.51e-16 | 77.8 |
| Msa0057380 | AT2G33350.2 | 56.452 | 62 | 24 | 1 | 192 | 253 | 297 | 355 | 3.86e-16 | 77.8 |
| Msa0057380 | AT2G33350.1 | 56.452 | 62 | 24 | 1 | 192 | 253 | 298 | 356 | 3.98e-16 | 77.8 |
| Msa0057380 | AT2G33350.4 | 56.452 | 62 | 24 | 1 | 192 | 253 | 286 | 344 | 4.34e-16 | 77.4 |
| Msa0057380 | AT2G33350.5 | 64.000 | 50 | 18 | 0 | 204 | 253 | 315 | 364 | 4.51e-16 | 77.4 |
| Msa0057380 | AT5G59990.1 | 59.091 | 44 | 18 | 0 | 215 | 258 | 170 | 213 | 1.04e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAATTAATTCAGTTAA+AGG | 0.186554 | 1_2:+13385095 | None:intergenic |
| TGTCTTCTTATTCCTATATC+TGG | 0.246824 | 1_2:+13385904 | None:intergenic |
| TTTCTTTCTCTTACTACAAC+TGG | 0.317260 | 1_2:-13389079 | Msa0057380:five_prime_UTR |
| TTCAGGAAATTTGAGTTCAA+TGG | 0.350069 | 1_2:-13386547 | Msa0057380:CDS |
| GCAAATCTTCCACGGATTCT+TGG | 0.350555 | 1_2:+13385153 | None:intergenic |
| GATAATAGTACATCAGGAAT+TGG | 0.361584 | 1_2:+13386582 | None:intergenic |
| AGTACTAATGGCAATTTGTA+TGG | 0.364332 | 1_2:+13384703 | None:intergenic |
| GAATTATTTCTAACAATGAT+TGG | 0.365515 | 1_2:-13384755 | Msa0057380:three_prime_UTR |
| TGGGAAAATTATAGACTTGA+TGG | 0.366764 | 1_2:-13384998 | Msa0057380:three_prime_UTR |
| CCTGCTTTCCTTGATTTCCC+TGG | 0.370726 | 1_2:-13386498 | Msa0057380:CDS |
| GCAATTTGTATGGATCAATA+TGG | 0.372128 | 1_2:+13384713 | None:intergenic |
| CCGTGGAAGATTTGCGAAAA+CGG | 0.381688 | 1_2:-13385145 | Msa0057380:CDS |
| GTTTCAATGAGAAACATAAA+AGG | 0.384534 | 1_2:+13389037 | None:intergenic |
| GATTGTGAGGAAGGGGTTTG+AGG | 0.386629 | 1_2:+13389134 | None:intergenic |
| AAGAAGACAAGGAGAAACTT+TGG | 0.387483 | 1_2:-13385890 | Msa0057380:CDS |
| CATGGTTTCAGTATGCTTGT+AGG | 0.397320 | 1_2:-13385197 | Msa0057380:intron |
| AGGAAAGCAGGCTTCATTGC+AGG | 0.402149 | 1_2:+13386510 | None:intergenic |
| GACCTTCTAGATATGTATAT+AGG | 0.415169 | 1_2:-13384882 | Msa0057380:three_prime_UTR |
| CTACAAAGAAAAGGCTACTA+AGG | 0.418223 | 1_2:+13384913 | None:intergenic |
| ACCGCGTTAAAATCAATTCC+AGG | 0.422111 | 1_2:+13386480 | None:intergenic |
| GAAATTTGAGTTCAATGGAT+TGG | 0.431971 | 1_2:-13386542 | Msa0057380:CDS |
| TTATCAAAGAGTGTCAGTTC+AGG | 0.440427 | 1_2:-13386564 | Msa0057380:CDS |
| GAGCAGGAATCTTGATTTCA+AGG | 0.444374 | 1_2:+13386640 | None:intergenic |
| CTCTTTGATAATAGTACATC+AGG | 0.447091 | 1_2:+13386576 | None:intergenic |
| TGAGAGTAATTCTGTAGATA+AGG | 0.454318 | 1_2:+13388945 | None:intergenic |
| GTATGTAAAGATTGTGAGGA+AGG | 0.455281 | 1_2:+13389125 | None:intergenic |
| AGAAGACAAGGAGAAACTTT+GGG | 0.461172 | 1_2:-13385889 | Msa0057380:CDS |
| GTGCAGTTGCTGAGAAGAAA+AGG | 0.470162 | 1_2:+13385953 | None:intergenic |
| AATCAATTCCAGGGAAATCA+AGG | 0.470610 | 1_2:+13386490 | None:intergenic |
| TGGGGAAGACATGTCGTCGC+AGG | 0.471749 | 1_2:-13386784 | Msa0057380:CDS |
| TCATAAGTCCAATGCTTCAA+TGG | 0.475058 | 1_2:-13388889 | Msa0057380:intron |
| GAGAGTAATTCTGTAGATAA+GGG | 0.476998 | 1_2:+13388946 | None:intergenic |
| CGGTTCTTCAATAATCGTCT+CGG | 0.477444 | 1_2:+13386854 | None:intergenic |
| CGAGACGATTATTGAAGAAC+CGG | 0.482715 | 1_2:-13386853 | Msa0057380:CDS |
| AACCTATATACATATCTAGA+AGG | 0.488206 | 1_2:+13384880 | None:intergenic |
| TGGCTGCTTGCATTTGATCA+AGG | 0.489809 | 1_2:+13386823 | None:intergenic |
| CATATCCATCTACAAAGAAA+AGG | 0.491733 | 1_2:+13384904 | None:intergenic |
| TATAACTTGAGCAGGTATCA+TGG | 0.496613 | 1_2:-13384970 | Msa0057380:three_prime_UTR |
| GCTACTAAGGAAAACTGCTT+AGG | 0.497063 | 1_2:+13384926 | None:intergenic |
| GTCGCAGGGTCTAAAATCTT+CGG | 0.499847 | 1_2:-13386769 | Msa0057380:CDS |
| TGGAATTCTATAACTTGAGC+AGG | 0.500490 | 1_2:-13384978 | Msa0057380:three_prime_UTR |
| AGAGGGTACCATTGAAGCAT+TGG | 0.503291 | 1_2:+13388881 | None:intergenic |
| TTGTTTGTATAACAGACTCT+TGG | 0.509295 | 1_2:-13386016 | Msa0057380:intron |
| AGAATTTGATTTATTTGTAG+AGG | 0.514069 | 1_2:-13386895 | Msa0057380:CDS |
| TTCTCGTCAATGTTCAGAGC+AGG | 0.527138 | 1_2:+13386624 | None:intergenic |
| TCCCATCACATAGCACTACC+AGG | 0.529438 | 1_2:+13385016 | None:intergenic |
| ATGTAAAGATTGTGAGGAAG+GGG | 0.535767 | 1_2:+13389127 | None:intergenic |
| ATTTGATCAAGGTCCATCTC+CGG | 0.536269 | 1_2:+13386834 | None:intergenic |
| CCAGGGAAATCAAGGAAAGC+AGG | 0.538494 | 1_2:+13386498 | None:intergenic |
| GAATTTGATTTATTTGTAGA+GGG | 0.539422 | 1_2:-13386894 | Msa0057380:CDS |
| AGTTCAATGGATTGGATGCA+TGG | 0.542974 | 1_2:-13386534 | Msa0057380:CDS |
| ATTTCAAGGATTTCAGAAAG+AGG | 0.543254 | 1_2:+13386654 | None:intergenic |
| GTTTGATGAATAATAAAAGA+AGG | 0.543872 | 1_2:-13384860 | Msa0057380:three_prime_UTR |
| GCAGCCATGTCAATGATGTC+TGG | 0.545025 | 1_2:-13386807 | Msa0057380:CDS |
| TATGTAAAGATTGTGAGGAA+GGG | 0.546950 | 1_2:+13389126 | None:intergenic |
| GATTATTGAAGAACCGGAGA+TGG | 0.549985 | 1_2:-13386847 | Msa0057380:CDS |
| GGTTCTTCAATAATCGTCTC+GGG | 0.551243 | 1_2:+13386855 | None:intergenic |
| CCGCGTTAAAATCAATTCCA+GGG | 0.559154 | 1_2:+13386481 | None:intergenic |
| AAGGCCTCTCTAGAGTGGAT+TGG | 0.563933 | 1_2:+13385972 | None:intergenic |
| AAACTTTGGGAGGAAAATCA+AGG | 0.564099 | 1_2:-13385876 | Msa0057380:intron |
| GGGGAAGACATGTCGTCGCA+GGG | 0.576526 | 1_2:-13386783 | Msa0057380:CDS |
| AAGAAAAGGCCTCTCTAGAG+TGG | 0.578670 | 1_2:+13385967 | None:intergenic |
| CGGAGGAGTTAGATATCAAG+AGG | 0.594972 | 1_2:-13385125 | Msa0057380:CDS |
| CCATGTCAATGATGTCTGGT+GGG | 0.605089 | 1_2:-13386803 | Msa0057380:CDS |
| GTTTCAGTATGCTTGTAGGA+AGG | 0.605930 | 1_2:-13385193 | Msa0057380:intron |
| GTATAACAGACTCTTGGCAA+TGG | 0.606169 | 1_2:-13386010 | Msa0057380:intron |
| GCCTGGTAGTGCTATGTGAT+GGG | 0.609531 | 1_2:-13385017 | Msa0057380:three_prime_UTR |
| AGCCTGGTAGTGCTATGTGA+TGG | 0.609985 | 1_2:-13385018 | Msa0057380:three_prime_UTR |
| GACAGTCAACCAAGAATCCG+TGG | 0.616160 | 1_2:-13385162 | Msa0057380:CDS |
| GGCAATGGTAACATGAGTGT+TGG | 0.622717 | 1_2:-13385995 | Msa0057380:CDS |
| CCCACCAGACATCATTGACA+TGG | 0.626711 | 1_2:+13386803 | None:intergenic |
| GCCATGTCAATGATGTCTGG+TGG | 0.631276 | 1_2:-13386804 | Msa0057380:CDS |
| GATATAGGAATAAGAAGACA+AGG | 0.632233 | 1_2:-13385901 | Msa0057380:CDS |
| AGAAAGAGGTGATTCTATAG+CGG | 0.645696 | 1_2:+13386668 | None:intergenic |
| TTGGCCAATCCACTCTAGAG+AGG | 0.651640 | 1_2:-13385976 | Msa0057380:CDS |
| TGGAAGATTTGCGAAAACGG+AGG | 0.654676 | 1_2:-13385142 | Msa0057380:CDS |
| ACATCGCATATGATTGAACA+AGG | 0.660417 | 1_2:+13386919 | None:intergenic |
| GTATGTATGTAAAGATTGTG+AGG | 0.669763 | 1_2:+13389121 | None:intergenic |
| CATGTCAATGATGTCTGGTG+GGG | 0.675165 | 1_2:-13386802 | Msa0057380:CDS |
| AGACAAGGAGAAACTTTGGG+AGG | 0.688525 | 1_2:-13385886 | Msa0057380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTTTCTTCAATTTTA+TGG | - | chr1_2:13385684-13385703 | Msa0057380:intron | 10.0% |
| !! | ATACAATACTAATATTTAAA+AGG | - | chr1_2:13386785-13386804 | Msa0057380:CDS | 10.0% |
| !! | TATAAATTAAATAACATCTA+TGG | - | chr1_2:13387465-13387484 | Msa0057380:intron | 10.0% |
| !! | ATAAAAAATATCACAGAAAT+TGG | + | chr1_2:13385012-13385031 | None:intergenic | 15.0% |
| !!! | TAATTTTAATCATATGTGAT+TGG | - | chr1_2:13385351-13385370 | Msa0057380:intron | 15.0% |
| !!! | ATATTTTCTTTATGAGTATA+TGG | - | chr1_2:13385409-13385428 | Msa0057380:intron | 15.0% |
| !! | AAAAATTGATTAAGTTCATA+AGG | - | chr1_2:13385483-13385502 | Msa0057380:intron | 15.0% |
| !! | ATATTATTACCAAGAAAAAA+GGG | + | chr1_2:13385796-13385815 | None:intergenic | 15.0% |
| !! | AATATTATTACCAAGAAAAA+AGG | + | chr1_2:13385797-13385816 | None:intergenic | 15.0% |
| !! | TAAATATATAGTTACAAAAG+AGG | - | chr1_2:13385873-13385892 | Msa0057380:intron | 15.0% |
| !!! | TTATGATACTTTTCTATTAT+TGG | - | chr1_2:13386818-13386837 | Msa0057380:CDS | 15.0% |
| !! | TTAAACATTATATGTTGTAT+TGG | - | chr1_2:13387496-13387515 | Msa0057380:intron | 15.0% |
| !!! | ATATTTCGTAATAGTTTTCT+AGG | - | chr1_2:13385187-13385206 | Msa0057380:CDS | 20.0% |
| !! | ATTATGTACATAATTAGTTG+AGG | + | chr1_2:13385251-13385270 | None:intergenic | 20.0% |
| !! | TCTATGTATCTATCTATATA+TGG | - | chr1_2:13385316-13385335 | Msa0057380:intron | 20.0% |
| !! | TGAAGAAAAATTAAAGAACA+CGG | + | chr1_2:13385678-13385697 | None:intergenic | 20.0% |
| !!! | TCTTGGTAATAATATTGAAA+AGG | - | chr1_2:13385801-13385820 | Msa0057380:intron | 20.0% |
| !!! | CACATGTTAATAATTCATTT+TGG | - | chr1_2:13385835-13385854 | Msa0057380:intron | 20.0% |
| !! | TTGAAGTTGGATTAATTTAA+CGG | - | chr1_2:13385972-13385991 | Msa0057380:CDS | 20.0% |
| !!! | TTTTATGAATACACAAAACA+CGG | + | chr1_2:13386106-13386125 | None:intergenic | 20.0% |
| !! | TTCATAAAAGAAGAAAGTTA+TGG | - | chr1_2:13386117-13386136 | Msa0057380:intron | 20.0% |
| !!! | TTTCAAAGTCAGATTTTTTT+GGG | - | chr1_2:13386240-13386259 | Msa0057380:intron | 20.0% |
| !! | AATTCTCAATAGTTAGTTAA+TGG | - | chr1_2:13386751-13386770 | Msa0057380:intron | 20.0% |
| !!! | AGAATTTGATTTATTTGTAG+AGG | - | chr1_2:13386948-13386967 | Msa0057380:intron | 20.0% |
| !!! | GAATTTGATTTATTTGTAGA+GGG | - | chr1_2:13386949-13386968 | Msa0057380:intron | 20.0% |
| !! | ACATATAATGTTTAACAAAG+TGG | + | chr1_2:13387491-13387510 | None:intergenic | 20.0% |
| !!! | TTAAATTTTTATATTGGACC+TGG | + | chr1_2:13387619-13387638 | None:intergenic | 20.0% |
| !! | TATAAATTAAGTAACATCCA+TGG | + | chr1_2:13387744-13387763 | None:intergenic | 20.0% |
| !! | TTGCATCTCATTAAATATTA+AGG | - | chr1_2:13388068-13388087 | Msa0057380:intron | 20.0% |
| !! | AAATGAATTTAAGAAAGTCT+TGG | + | chr1_2:13388339-13388358 | None:intergenic | 20.0% |
| !!! | ACATTATTAGAATTTGAGTT+CGG | + | chr1_2:13388624-13388643 | None:intergenic | 20.0% |
| !! | TCTTCAATTAATTCAGTTAA+AGG | + | chr1_2:13388751-13388770 | None:intergenic | 20.0% |
| !! | GTTTGATGAATAATAAAAGA+AGG | - | chr1_2:13388983-13389002 | Msa0057380:exon | 20.0% |
| !!! | GAATTATTTCTAACAATGAT+TGG | - | chr1_2:13389088-13389107 | Msa0057380:five_prime_UTR | 20.0% |
| ! | GTTTCAATGAGAAACATAAA+AGG | + | chr1_2:13384809-13384828 | None:intergenic | 25.0% |
| ! | AAGAGAGAAGAAAAAAAAGA+GGG | + | chr1_2:13384982-13385001 | None:intergenic | 25.0% |
| ! | GGAAATAAAAGTGATTAAGA+TGG | - | chr1_2:13385628-13385647 | Msa0057380:intron | 25.0% |
| !!! | CATATTATTCCCTTTTTTCT+TGG | - | chr1_2:13385784-13385803 | Msa0057380:intron | 25.0% |
| !! | GTAATCATGCTTACTATTTT+TGG | - | chr1_2:13385895-13385914 | Msa0057380:CDS | 25.0% |
| !!! | CTTTCAAAGTCAGATTTTTT+TGG | - | chr1_2:13386239-13386258 | Msa0057380:intron | 25.0% |
| ! | AGGTTATTTGAATTGGTATT+AGG | + | chr1_2:13386302-13386321 | None:intergenic | 25.0% |
| ! | TTCTATAACCTATGAAAACT+CGG | - | chr1_2:13386502-13386521 | Msa0057380:CDS | 25.0% |
| !! | GAAATTTGTAATTTGCATAG+TGG | - | chr1_2:13386615-13386634 | Msa0057380:CDS | 25.0% |
| ! | ATTCCATCAAGTAATTGTTA+AGG | + | chr1_2:13386641-13386660 | None:intergenic | 25.0% |
| ! | CAAAAAAGATCTCTTAGAAA+AGG | - | chr1_2:13387152-13387171 | Msa0057380:intron | 25.0% |
| ! | ATTTAGTGAAGGAGATATAA+AGG | - | chr1_2:13387404-13387423 | Msa0057380:intron | 25.0% |
| ! | AGATATAAAGGTCAACTTAA+AGG | - | chr1_2:13387416-13387435 | Msa0057380:intron | 25.0% |
| !! | TCTTACAAAACTAGTTTGTA+AGG | + | chr1_2:13387591-13387610 | None:intergenic | 25.0% |
| !! | ATATAATGTCTAAGACAAAG+AGG | - | chr1_2:13387718-13387737 | Msa0057380:intron | 25.0% |
| !!! | ATCATTTTGATATGGCAAAT+AGG | + | chr1_2:13387790-13387809 | None:intergenic | 25.0% |
| ! | TTTGCCATATCAAAATGATT+TGG | - | chr1_2:13387791-13387810 | Msa0057380:intron | 25.0% |
| !!! | TACACCAAATCATTTTGATA+TGG | + | chr1_2:13387798-13387817 | None:intergenic | 25.0% |
| ! | AAAATTTCAAAAGATGTGTG+AGG | + | chr1_2:13388043-13388062 | None:intergenic | 25.0% |
| ! | CTCATTAAATATTAAGGATC+CGG | - | chr1_2:13388074-13388093 | Msa0057380:intron | 25.0% |
| ! | CAAATTCTAATAATGTTGCA+TGG | - | chr1_2:13388628-13388647 | Msa0057380:intron | 25.0% |
| ! | AACCTATATACATATCTAGA+AGG | + | chr1_2:13388966-13388985 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAAAAAAAAGAG+AGG | - | chr1_2:13388998-13389017 | Msa0057380:five_prime_UTR | 25.0% |
| TATGTAAAGATTGTGAGGAA+GGG | + | chr1_2:13384720-13384739 | None:intergenic | 30.0% | |
| GTATGTATGTAAAGATTGTG+AGG | + | chr1_2:13384725-13384744 | None:intergenic | 30.0% | |
| TTTCTTTCTCTTACTACAAC+TGG | - | chr1_2:13384764-13384783 | Msa0057380:three_prime_UTR | 30.0% | |
| ! | AAACATTTTTGTTAGCTGAG+AGG | + | chr1_2:13384857-13384876 | None:intergenic | 30.0% |
| ACAAAAATGTTTGCAGAAAC+TGG | - | chr1_2:13384865-13384884 | Msa0057380:three_prime_UTR | 30.0% | |
| GAGAGTAATTCTGTAGATAA+GGG | + | chr1_2:13384900-13384919 | None:intergenic | 30.0% | |
| TGAGAGTAATTCTGTAGATA+AGG | + | chr1_2:13384901-13384920 | None:intergenic | 30.0% | |
| CAAGAGAGAAGAAAAAAAAG+AGG | + | chr1_2:13384983-13385002 | None:intergenic | 30.0% | |
| !! | ATCTGGAAAAGTGTTACAAA+AGG | - | chr1_2:13385607-13385626 | Msa0057380:intron | 30.0% |
| ATTAATCCAACTTCAAAGTG+CGG | + | chr1_2:13385968-13385987 | None:intergenic | 30.0% | |
| ! | AACTTTTCGTACAAGCAAAA+TGG | + | chr1_2:13386082-13386101 | None:intergenic | 30.0% |
| TATTACTCAGCTCAAGAATA+TGG | + | chr1_2:13386145-13386164 | None:intergenic | 30.0% | |
| !!! | AGATTTTTTTGGGTGAAGTA+TGG | - | chr1_2:13386250-13386269 | Msa0057380:intron | 30.0% |
| !!! | GATTTTTTTGGGTGAAGTAT+GGG | - | chr1_2:13386251-13386270 | Msa0057380:intron | 30.0% |
| TAACTACTGCAGAAAATTCT+CGG | + | chr1_2:13386447-13386466 | None:intergenic | 30.0% | |
| CTTTCTCTCTCTTTGTAAAA+TGG | - | chr1_2:13386555-13386574 | Msa0057380:CDS | 30.0% | |
| GAAAAGATTTAGACCAATAG+AGG | + | chr1_2:13386592-13386611 | None:intergenic | 30.0% | |
| ! | GTTTTCACTTTAACTGTGTA+AGG | - | chr1_2:13386680-13386699 | Msa0057380:CDS | 30.0% |
| AATGACAAAAGACATACTAG+GGG | + | chr1_2:13386856-13386875 | None:intergenic | 30.0% | |
| GAATGACAAAAGACATACTA+GGG | + | chr1_2:13386857-13386876 | None:intergenic | 30.0% | |
| AGAATGACAAAAGACATACT+AGG | + | chr1_2:13386858-13386877 | None:intergenic | 30.0% | |
| ATTTCAAGGATTTCAGAAAG+AGG | + | chr1_2:13387192-13387211 | None:intergenic | 30.0% | |
| GATAATAGTACATCAGGAAT+TGG | + | chr1_2:13387264-13387283 | None:intergenic | 30.0% | |
| ! | CTCTTTGATAATAGTACATC+AGG | + | chr1_2:13387270-13387289 | None:intergenic | 30.0% |
| ! | TTCAGGAAATTTGAGTTCAA+TGG | - | chr1_2:13387296-13387315 | Msa0057380:intron | 30.0% |
| ! | GAAATTTGAGTTCAATGGAT+TGG | - | chr1_2:13387301-13387320 | Msa0057380:intron | 30.0% |
| !! | ATTGATTTTAACGCGGTTTA+TGG | - | chr1_2:13387369-13387388 | Msa0057380:intron | 30.0% |
| ! | AAAACTAGTTTGTAAGGTGA+GGG | + | chr1_2:13387585-13387604 | None:intergenic | 30.0% |
| TATGTTGATGTATCTAGACT+CGG | - | chr1_2:13387639-13387658 | Msa0057380:intron | 30.0% | |
| TTGTTTGTATAACAGACTCT+TGG | - | chr1_2:13387827-13387846 | Msa0057380:intron | 30.0% | |
| AAGAAAAACTCTCCAGATAT+AGG | - | chr1_2:13387927-13387946 | Msa0057380:intron | 30.0% | |
| TGTCTTCTTATTCCTATATC+TGG | + | chr1_2:13387942-13387961 | None:intergenic | 30.0% | |
| GATATAGGAATAAGAAGACA+AGG | - | chr1_2:13387942-13387961 | Msa0057380:intron | 30.0% | |
| TAAAGTCTTCTATGTTCATG+TGG | + | chr1_2:13388000-13388019 | None:intergenic | 30.0% | |
| GACTATCTAATCCAAATCAA+TGG | + | chr1_2:13388214-13388233 | None:intergenic | 30.0% | |
| ! | GGAGTATTAGTATTTGCAAA+TGG | + | chr1_2:13388275-13388294 | None:intergenic | 30.0% |
| TTTGCAAATACTAATACTCC+TGG | - | chr1_2:13388275-13388294 | Msa0057380:intron | 30.0% | |
| TCAACATTATACTTCATACC+AGG | + | chr1_2:13388296-13388315 | None:intergenic | 30.0% | |
| ! | AATCATTGCTTCAACTTTTG+AGG | - | chr1_2:13388426-13388445 | Msa0057380:intron | 30.0% |
| ! | AAGTACTTAAAAGCATGCAA+GGG | + | chr1_2:13388529-13388548 | None:intergenic | 30.0% |
| TGCATCAGATCAAAAAAAGA+TGG | - | chr1_2:13388799-13388818 | Msa0057380:intron | 30.0% | |
| TGGGAAAATTATAGACTTGA+TGG | - | chr1_2:13388845-13388864 | Msa0057380:intron | 30.0% | |
| CATATCCATCTACAAAGAAA+AGG | + | chr1_2:13388942-13388961 | None:intergenic | 30.0% | |
| GACCTTCTAGATATGTATAT+AGG | - | chr1_2:13388961-13388980 | Msa0057380:CDS | 30.0% | |
| AGGAAAAAAAAAGAGAGGTA+AGG | - | chr1_2:13389003-13389022 | Msa0057380:five_prime_UTR | 30.0% | |
| GCAATTTGTATGGATCAATA+TGG | + | chr1_2:13389133-13389152 | None:intergenic | 30.0% | |
| ATGTAAAGATTGTGAGGAAG+GGG | + | chr1_2:13384719-13384738 | None:intergenic | 35.0% | |
| GTATGTAAAGATTGTGAGGA+AGG | + | chr1_2:13384721-13384740 | None:intergenic | 35.0% | |
| TCATAAGTCCAATGCTTCAA+TGG | - | chr1_2:13384954-13384973 | Msa0057380:three_prime_UTR | 35.0% | |
| ATCAAGCAAATGCAGTTCAA+AGG | + | chr1_2:13385093-13385112 | None:intergenic | 35.0% | |
| TTTGAACTGCATTTGCTTGA+TGG | - | chr1_2:13385092-13385111 | Msa0057380:three_prime_UTR | 35.0% | |
| !! | CTAGAGTTAGCTTTAATTGC+TGG | - | chr1_2:13385584-13385603 | Msa0057380:intron | 35.0% |
| !! | TTAGCTTTAATTGCTGGATC+TGG | - | chr1_2:13385590-13385609 | Msa0057380:intron | 35.0% |
| TCAATAAACCTCTCCTTAGT+GGG | + | chr1_2:13385751-13385770 | None:intergenic | 35.0% | |
| TTCAATAAACCTCTCCTTAG+TGG | + | chr1_2:13385752-13385771 | None:intergenic | 35.0% | |
| AAGGAGAGGTTTATTGAAGA+AGG | - | chr1_2:13385754-13385773 | Msa0057380:intron | 35.0% | |
| AGACATTAATTCAGTCCAGA+AGG | + | chr1_2:13386176-13386195 | None:intergenic | 35.0% | |
| GTGTCACAGGTTATTTGAAT+TGG | + | chr1_2:13386309-13386328 | None:intergenic | 35.0% | |
| AATTCCATTGAACCTTGACA+TGG | + | chr1_2:13386352-13386371 | None:intergenic | 35.0% | |
| AACTACTGCAGAAAATTCTC+GGG | + | chr1_2:13386446-13386465 | None:intergenic | 35.0% | |
| ! | GAATGATACCGAGTTTTCAT+AGG | + | chr1_2:13386513-13386532 | None:intergenic | 35.0% |
| CTCTCTTTGTAAAATGGTTG+AGG | - | chr1_2:13386561-13386580 | Msa0057380:CDS | 35.0% | |
| ! | TGGCCTTAACAATTACTTGA+TGG | - | chr1_2:13386635-13386654 | Msa0057380:CDS | 35.0% |
| CTCTGCATTAAAACACAGTA+AGG | + | chr1_2:13386901-13386920 | None:intergenic | 35.0% | |
| ACATCGCATATGATTGAACA+AGG | + | chr1_2:13386927-13386946 | None:intergenic | 35.0% | |
| AGAAAGAGGTGATTCTATAG+CGG | + | chr1_2:13387178-13387197 | None:intergenic | 35.0% | |
| !! | TTATCAAAGAGTGTCAGTTC+AGG | - | chr1_2:13387279-13387298 | Msa0057380:intron | 35.0% |
| AATCAATTCCAGGGAAATCA+AGG | + | chr1_2:13387356-13387375 | None:intergenic | 35.0% | |
| ! | AAACTAGTTTGTAAGGTGAG+GGG | + | chr1_2:13387584-13387603 | None:intergenic | 35.0% |
| ! | CAAAACTAGTTTGTAAGGTG+AGG | + | chr1_2:13387586-13387605 | None:intergenic | 35.0% |
| !!! | TAGTTTTGTAAGAATGAGCC+AGG | - | chr1_2:13387598-13387617 | Msa0057380:intron | 35.0% |
| ATGTTGATGTATCTAGACTC+GGG | - | chr1_2:13387640-13387659 | Msa0057380:intron | 35.0% | |
| AAGAAGACAAGGAGAAACTT+TGG | - | chr1_2:13387953-13387972 | Msa0057380:intron | 35.0% | |
| AGAAGACAAGGAGAAACTTT+GGG | - | chr1_2:13387954-13387973 | Msa0057380:intron | 35.0% | |
| ! | AAACTTTGGGAGGAAAATCA+AGG | - | chr1_2:13387967-13387986 | Msa0057380:intron | 35.0% |
| TACTTGCTTCTCTTACATCA+GGG | + | chr1_2:13388103-13388122 | None:intergenic | 35.0% | |
| ATACTTGCTTCTCTTACATC+AGG | + | chr1_2:13388104-13388123 | None:intergenic | 35.0% | |
| GCTGTCAGCTTTCAAATTAA+TGG | + | chr1_2:13388150-13388169 | None:intergenic | 35.0% | |
| AATTTGAAAGCTGACAGCAT+AGG | - | chr1_2:13388152-13388171 | Msa0057380:intron | 35.0% | |
| ! | AACAAACTCGTCCATTGATT+TGG | - | chr1_2:13388200-13388219 | Msa0057380:intron | 35.0% |
| ! | TTGGATTAGATAGTCGAGAT+CGG | - | chr1_2:13388219-13388238 | Msa0057380:intron | 35.0% |
| TGCATAATGCAGTTATTGCA+GGG | - | chr1_2:13388246-13388265 | Msa0057380:intron | 35.0% | |
| AAAAAACTGCATCAGTAGCA+AGG | - | chr1_2:13388497-13388516 | Msa0057380:intron | 35.0% | |
| ! | TTAAAAGCATGCAAGGGATT+AGG | + | chr1_2:13388523-13388542 | None:intergenic | 35.0% |
| ! | GAAGTACTTAAAAGCATGCA+AGG | + | chr1_2:13388530-13388549 | None:intergenic | 35.0% |
| CAAAAAAAGATGGAAAAGCC+TGG | - | chr1_2:13388809-13388828 | Msa0057380:intron | 35.0% | |
| TGGAATTCTATAACTTGAGC+AGG | - | chr1_2:13388865-13388884 | Msa0057380:intron | 35.0% | |
| TATAACTTGAGCAGGTATCA+TGG | - | chr1_2:13388873-13388892 | Msa0057380:intron | 35.0% | |
| ! | AAAACTGCTTAGGAGTTTTG+AGG | + | chr1_2:13388910-13388929 | None:intergenic | 35.0% |
| CTACAAAGAAAAGGCTACTA+AGG | + | chr1_2:13388933-13388952 | None:intergenic | 35.0% | |
| ! | AGTAGCCTTTTCTTTGTAGA+TGG | - | chr1_2:13388934-13388953 | Msa0057380:CDS | 35.0% |
| AGTCATACTCAAAGCACAAG+TGG | - | chr1_2:13385555-13385574 | Msa0057380:intron | 40.0% | |
| GTTGAAGTGTGAACTCATAG+TGG | - | chr1_2:13385708-13385727 | Msa0057380:intron | 40.0% | |
| CAATAAACCTCTCCTTAGTG+GGG | + | chr1_2:13385750-13385769 | None:intergenic | 40.0% | |
| GATTAATCCAACGACTGATC+AGG | - | chr1_2:13386021-13386040 | Msa0057380:intron | 40.0% | |
| TACAAGCAAAATGGAACCCT+AGG | + | chr1_2:13386073-13386092 | None:intergenic | 40.0% | |
| AGTAATAGTCCAGTTCCTTC+TGG | - | chr1_2:13386158-13386177 | Msa0057380:intron | 40.0% | |
| TAATTCAGTCCAGAAGGAAC+TGG | + | chr1_2:13386170-13386189 | None:intergenic | 40.0% | |
| CATTGAACCTTGACATGGAA+AGG | + | chr1_2:13386347-13386366 | None:intergenic | 40.0% | |
| CTTTCCATGTCAAGGTTCAA+TGG | - | chr1_2:13386345-13386364 | Msa0057380:intron | 40.0% | |
| AGAAGCTTTGCGTAAACGAA+AGG | + | chr1_2:13386385-13386404 | None:intergenic | 40.0% | |
| TTCGTGTTTACTGAGTAACG+CGG | + | chr1_2:13386728-13386747 | None:intergenic | 40.0% | |
| GGTTCTTCAATAATCGTCTC+GGG | + | chr1_2:13386991-13387010 | None:intergenic | 40.0% | |
| CGGTTCTTCAATAATCGTCT+CGG | + | chr1_2:13386992-13387011 | None:intergenic | 40.0% | |
| CGAGACGATTATTGAAGAAC+CGG | - | chr1_2:13386990-13387009 | Msa0057380:intron | 40.0% | |
| GATTATTGAAGAACCGGAGA+TGG | - | chr1_2:13386996-13387015 | Msa0057380:intron | 40.0% | |
| ATTTGATCAAGGTCCATCTC+CGG | + | chr1_2:13387012-13387031 | None:intergenic | 40.0% | |
| !! | AAGCGAACAACTTTTGAGTG+AGG | - | chr1_2:13387116-13387135 | Msa0057380:intron | 40.0% |
| GAGCAGGAATCTTGATTTCA+AGG | + | chr1_2:13387206-13387225 | None:intergenic | 40.0% | |
| !! | AGTTCAATGGATTGGATGCA+TGG | - | chr1_2:13387309-13387328 | Msa0057380:intron | 40.0% |
| CCGCGTTAAAATCAATTCCA+GGG | + | chr1_2:13387365-13387384 | None:intergenic | 40.0% | |
| !! | CCCTGGAATTGATTTTAACG+CGG | - | chr1_2:13387362-13387381 | Msa0057380:intron | 40.0% |
| ACCGCGTTAAAATCAATTCC+AGG | + | chr1_2:13387366-13387385 | None:intergenic | 40.0% | |
| !! | ATGCGAAGAGCATTTAGTGA+AGG | - | chr1_2:13387393-13387412 | Msa0057380:intron | 40.0% |
| GTCTTATCTCTTCTCAACGT+GGG | + | chr1_2:13387535-13387554 | None:intergenic | 40.0% | |
| ! | AGTCTTATCTCTTCTCAACG+TGG | + | chr1_2:13387536-13387555 | None:intergenic | 40.0% |
| CGTTGAGAAGAGATAAGACT+TGG | - | chr1_2:13387536-13387555 | Msa0057380:intron | 40.0% | |
| GTATAACAGACTCTTGGCAA+TGG | - | chr1_2:13387833-13387852 | Msa0057380:intron | 40.0% | |
| TTCTCTTACATCAGGGAATC+CGG | + | chr1_2:13388096-13388115 | None:intergenic | 40.0% | |
| CTGCATAATGCAGTTATTGC+AGG | - | chr1_2:13388245-13388264 | Msa0057380:intron | 40.0% | |
| AGACACTTAGCTACTCATTG+AGG | + | chr1_2:13388397-13388416 | None:intergenic | 40.0% | |
| ATCGTGTCAAAGGCTGAAAA+TGG | + | chr1_2:13388600-13388619 | None:intergenic | 40.0% | |
| CATGGTTTCAGTATGCTTGT+AGG | - | chr1_2:13388646-13388665 | Msa0057380:intron | 40.0% | |
| GTTTCAGTATGCTTGTAGGA+AGG | - | chr1_2:13388650-13388669 | Msa0057380:intron | 40.0% | |
| GCTACTAAGGAAAACTGCTT+AGG | + | chr1_2:13388920-13388939 | None:intergenic | 40.0% | |
| !! | AGAGGGTACCATTGAAGCAT+TGG | + | chr1_2:13384965-13384984 | None:intergenic | 45.0% |
| ! | TGTCTTTTTCTGCCCCACTA+AGG | - | chr1_2:13385735-13385754 | Msa0057380:intron | 45.0% |
| AGAAGCTGCATAAGCAACCT+AGG | - | chr1_2:13386053-13386072 | Msa0057380:intron | 45.0% | |
| GAAGCTGCATAAGCAACCTA+GGG | - | chr1_2:13386054-13386073 | Msa0057380:intron | 45.0% | |
| TTCAGCCATCAACCAACAGT+TGG | - | chr1_2:13386213-13386232 | Msa0057380:intron | 45.0% | |
| TCAGCCATCAACCAACAGTT+GGG | - | chr1_2:13386214-13386233 | Msa0057380:intron | 45.0% | |
| ! | CTTTGAAAGAGCCCAACTGT+TGG | + | chr1_2:13386228-13386247 | None:intergenic | 45.0% |
| AGCTCTTCCTTTCCATGTCA+AGG | - | chr1_2:13386337-13386356 | Msa0057380:intron | 45.0% | |
| GGTTGAGGAACAACCTCTAT+TGG | - | chr1_2:13386576-13386595 | Msa0057380:CDS | 45.0% | |
| TGGCTGCTTGCATTTGATCA+AGG | + | chr1_2:13387023-13387042 | None:intergenic | 45.0% | |
| CCATGTCAATGATGTCTGGT+GGG | - | chr1_2:13387040-13387059 | Msa0057380:intron | 45.0% | |
| CATGTCAATGATGTCTGGTG+GGG | - | chr1_2:13387041-13387060 | Msa0057380:intron | 45.0% | |
| ! | GTCGCAGGGTCTAAAATCTT+CGG | - | chr1_2:13387074-13387093 | Msa0057380:intron | 45.0% |
| TTCTCGTCAATGTTCAGAGC+AGG | + | chr1_2:13387222-13387241 | None:intergenic | 45.0% | |
| ! | TGTCTAAGACAAAGAGGCCA+TGG | - | chr1_2:13387724-13387743 | Msa0057380:intron | 45.0% |
| GGCAATGGTAACATGAGTGT+TGG | - | chr1_2:13387848-13387867 | Msa0057380:intron | 45.0% | |
| ! | AAGAAAAGGCCTCTCTAGAG+TGG | + | chr1_2:13387879-13387898 | None:intergenic | 45.0% |
| GTGCAGTTGCTGAGAAGAAA+AGG | + | chr1_2:13387893-13387912 | None:intergenic | 45.0% | |
| AGACAAGGAGAAACTTTGGG+AGG | - | chr1_2:13387957-13387976 | Msa0057380:intron | 45.0% | |
| TGAGTTCGGAATCGTGTCAA+AGG | + | chr1_2:13388610-13388629 | None:intergenic | 45.0% | |
| GCAAATCTTCCACGGATTCT+TGG | + | chr1_2:13388693-13388712 | None:intergenic | 45.0% | |
| ! | CCGTTTTCGCAAATCTTCCA+CGG | + | chr1_2:13388701-13388720 | None:intergenic | 45.0% |
| CCGTGGAAGATTTGCGAAAA+CGG | - | chr1_2:13388698-13388717 | Msa0057380:intron | 45.0% | |
| TGGAAGATTTGCGAAAACGG+AGG | - | chr1_2:13388701-13388720 | Msa0057380:intron | 45.0% | |
| CGGAGGAGTTAGATATCAAG+AGG | - | chr1_2:13388718-13388737 | Msa0057380:intron | 45.0% | |
| !!! | AACATATTAAATTTTTATAT+TGG | + | chr1_2:13387625-13387644 | None:intergenic | 5.0% |
| ! | TTTTCTGCCCCACTAAGGAG+AGG | - | chr1_2:13385740-13385759 | Msa0057380:intron | 50.0% |
| ATCCAACTTCAAAGTGCGGC+TGG | + | chr1_2:13385964-13385983 | None:intergenic | 50.0% | |
| ATCCAACGACTGATCAGGTG+CGG | - | chr1_2:13386026-13386045 | Msa0057380:intron | 50.0% | |
| ! | AGAGCCCAACTGTTGGTTGA+TGG | + | chr1_2:13386221-13386240 | None:intergenic | 50.0% |
| GAGCTGAGTAGTAGTGTCAC+AGG | + | chr1_2:13386322-13386341 | None:intergenic | 50.0% | |
| CTGAGTAACGCGGATGAGTT+GGG | + | chr1_2:13386718-13386737 | None:intergenic | 50.0% | |
| ACTGAGTAACGCGGATGAGT+TGG | + | chr1_2:13386719-13386738 | None:intergenic | 50.0% | |
| GCAGCCATGTCAATGATGTC+TGG | - | chr1_2:13387036-13387055 | Msa0057380:intron | 50.0% | |
| GCCATGTCAATGATGTCTGG+TGG | - | chr1_2:13387039-13387058 | Msa0057380:intron | 50.0% | |
| CCCACCAGACATCATTGACA+TGG | + | chr1_2:13387043-13387062 | None:intergenic | 50.0% | |
| AGGAAAGCAGGCTTCATTGC+AGG | + | chr1_2:13387336-13387355 | None:intergenic | 50.0% | |
| CCAGGGAAATCAAGGAAAGC+AGG | + | chr1_2:13387348-13387367 | None:intergenic | 50.0% | |
| CCTGCTTTCCTTGATTTCCC+TGG | - | chr1_2:13387345-13387364 | Msa0057380:intron | 50.0% | |
| ! | TTGGCCAATCCACTCTAGAG+AGG | - | chr1_2:13387867-13387886 | Msa0057380:intron | 50.0% |
| !! | AAGGCCTCTCTAGAGTGGAT+TGG | + | chr1_2:13387874-13387893 | None:intergenic | 50.0% |
| GACAGTCAACCAAGAATCCG+TGG | - | chr1_2:13388681-13388700 | Msa0057380:intron | 50.0% | |
| ! | AGCCTGGTAGTGCTATGTGA+TGG | - | chr1_2:13388825-13388844 | Msa0057380:intron | 50.0% |
| ! | GCCTGGTAGTGCTATGTGAT+GGG | - | chr1_2:13388826-13388845 | Msa0057380:intron | 50.0% |
| TCCCATCACATAGCACTACC+AGG | + | chr1_2:13388830-13388849 | None:intergenic | 50.0% | |
| ACTTCAAAGTGCGGCTGGAG+AGG | + | chr1_2:13385959-13385978 | None:intergenic | 55.0% | |
| !! | CTCCAGCCGCACTTTGAAGT+TGG | - | chr1_2:13385959-13385978 | Msa0057380:CDS | 55.0% |
| AACCGCACCTGATCAGTCGT+TGG | + | chr1_2:13386031-13386050 | None:intergenic | 55.0% | |
| ! | GCGGATGAGTTGGGCTACAT+GGG | + | chr1_2:13386709-13386728 | None:intergenic | 55.0% |
| GTCCTCTTTAGCGCTGCACA+CGG | - | chr1_2:13387662-13387681 | Msa0057380:intron | 55.0% | |
| TTAGCGCTGCACACGGTGAA+CGG | - | chr1_2:13387669-13387688 | Msa0057380:intron | 55.0% | |
| ! | CGCGGATGAGTTGGGCTACA+TGG | + | chr1_2:13386710-13386729 | None:intergenic | 60.0% |
| TGGGGAAGACATGTCGTCGC+AGG | - | chr1_2:13387059-13387078 | Msa0057380:intron | 60.0% | |
| GGGGAAGACATGTCGTCGCA+GGG | - | chr1_2:13387060-13387079 | Msa0057380:intron | 60.0% | |
| CACCGTGTGCAGCGCTAAAG+AGG | + | chr1_2:13387667-13387686 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 13384712 | 13389153 | 13384712 | ID=Msa0057380;Name=Msa0057380 |
| chr1_2 | mRNA | 13384712 | 13389153 | 13384712 | ID=Msa0057380-mRNA-1;Parent=Msa0057380;Name=Msa0057380-mRNA-1;_AED=0.13;_eAED=0.13;_QI=159|0.5|0.6|1|0.25|0.4|5|407|258 |
| chr1_2 | exon | 13384712 | 13385208 | 13384712 | ID=Msa0057380-mRNA-1:exon:5237;Parent=Msa0057380-mRNA-1 |
| chr1_2 | exon | 13385877 | 13386023 | 13385877 | ID=Msa0057380-mRNA-1:exon:5236;Parent=Msa0057380-mRNA-1 |
| chr1_2 | exon | 13386482 | 13386727 | 13386482 | ID=Msa0057380-mRNA-1:exon:5235;Parent=Msa0057380-mRNA-1 |
| chr1_2 | exon | 13386758 | 13386946 | 13386758 | ID=Msa0057380-mRNA-1:exon:5234;Parent=Msa0057380-mRNA-1 |
| chr1_2 | exon | 13388890 | 13389153 | 13388890 | ID=Msa0057380-mRNA-1:exon:5233;Parent=Msa0057380-mRNA-1 |
| chr1_2 | five_prime_UTR | 13388995 | 13389153 | 13388995 | ID=Msa0057380-mRNA-1:five_prime_utr;Parent=Msa0057380-mRNA-1 |
| chr1_2 | CDS | 13388890 | 13388994 | 13388890 | ID=Msa0057380-mRNA-1:cds;Parent=Msa0057380-mRNA-1 |
| chr1_2 | CDS | 13386758 | 13386946 | 13386758 | ID=Msa0057380-mRNA-1:cds;Parent=Msa0057380-mRNA-1 |
| chr1_2 | CDS | 13386482 | 13386727 | 13386482 | ID=Msa0057380-mRNA-1:cds;Parent=Msa0057380-mRNA-1 |
| chr1_2 | CDS | 13385877 | 13386023 | 13385877 | ID=Msa0057380-mRNA-1:cds;Parent=Msa0057380-mRNA-1 |
| chr1_2 | CDS | 13385119 | 13385208 | 13385119 | ID=Msa0057380-mRNA-1:cds;Parent=Msa0057380-mRNA-1 |
| chr1_2 | three_prime_UTR | 13384712 | 13385118 | 13384712 | ID=Msa0057380-mRNA-1:three_prime_utr;Parent=Msa0057380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
