AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816080 MtrunA17_Chr5g0406741 98.126 427 8 0 1 427 1 427 0.0 874
Msa0816080 MtrunA17_Chr8g0370671 71.296 432 112 4 4 427 4 431 0.0 622
Msa0816080 MtrunA17_Chr7g0255771 46.763 278 137 3 155 424 182 456 3.28e-84 265
Msa0816080 MtrunA17_Chr5g0441371 46.494 271 142 3 155 423 148 417 1.30e-78 249
Msa0816080 MtrunA17_Chr8g0357001 47.679 237 118 2 144 380 464 694 5.07e-64 218
Msa0816080 MtrunA17_Chr1g0148681 34.521 365 208 8 85 419 47 410 2.99e-60 201
Msa0816080 MtrunA17_Chr3g0138431 39.394 297 168 6 132 419 174 467 4.83e-57 194
Msa0816080 MtrunA17_Chr3g0125051 37.847 288 161 8 145 420 216 497 2.13e-56 194
Msa0816080 MtrunA17_Chr2g0332171 41.975 243 132 5 146 380 195 436 6.81e-53 184
Msa0816080 MtrunA17_Chr3g0125041 36.429 280 167 6 156 425 228 506 1.79e-51 181
Msa0816080 MtrunA17_Chr2g0332181 37.413 286 167 5 137 411 129 413 1.08e-50 177
Msa0816080 MtrunA17_Chr1g0152871 36.398 261 156 4 165 415 84 344 6.95e-48 167
Msa0816080 MtrunA17_Chr3g0134401 34.263 251 158 3 172 415 74 324 1.55e-43 155
Msa0816080 MtrunA17_Chr3g0102851 39.648 227 126 5 170 389 30 252 4.75e-42 150
Msa0816080 MtrunA17_Chr3g0134411 33.984 256 160 4 169 415 88 343 3.49e-41 150
Msa0816080 MtrunA17_Chr3g0134421 34.387 253 157 4 172 415 84 336 1.98e-39 144
Msa0816080 MtrunA17_Chr3g0134441 35.246 244 139 5 170 399 62 300 2.19e-39 144
Msa0816080 MtrunA17_Chr3g0103471 36.726 226 132 5 170 388 20 241 7.40e-37 136
Msa0816080 MtrunA17_Chr3g0102861 36.283 226 133 5 170 388 20 241 9.93e-36 132
Msa0816080 MtrunA17_Chr3g0102621 35.193 233 140 5 163 388 19 247 6.06e-35 130
Msa0816080 MtrunA17_Chr3g0134431 32.203 236 138 5 176 406 13 231 1.05e-28 113
Msa0816080 MtrunA17_Chr6g0462981 34.363 259 146 9 171 422 45 286 3.40e-28 113
Msa0816080 MtrunA17_Chr3g0102631 38.286 175 101 3 222 389 1 175 4.87e-28 110
Msa0816080 MtrunA17_Chr3g0102651 38.286 175 101 3 222 389 1 175 4.87e-28 110
Msa0816080 MtrunA17_Chr3g0102661 38.286 175 101 3 222 389 1 175 4.87e-28 110
Msa0816080 MtrunA17_Chr3g0102671 38.286 175 101 3 222 389 1 175 4.87e-28 110
Msa0816080 MtrunA17_Chr6g0462911 31.325 249 156 6 171 415 45 282 5.48e-27 110
Msa0816080 MtrunA17_Chr5g0398791 34.302 172 108 2 171 338 2 172 2.58e-24 99.0
Msa0816080 MtrunA17_Chr5g0418901 46.914 81 43 0 226 306 7 87 4.05e-20 84.7
Msa0816080 MtrunA17_Chr1g0161581 32.979 188 111 3 174 355 336 514 2.31e-16 81.3
Msa0816080 MtrunA17_Chr2g0277271 49.123 57 29 0 209 265 33 89 3.69e-12 62.4
Msa0816080 MtrunA17_Chr3g0134781 28.571 119 82 1 199 314 61 179 8.67e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816080 AT1G20610.1 59.701 402 154 5 26 424 33 429 1.53e-170 485
Msa0816080 AT1G76310.1 59.382 421 149 9 17 424 19 430 2.52e-169 482
Msa0816080 AT1G76310.3 55.679 449 149 10 17 424 19 458 1.61e-162 466
Msa0816080 AT2G17620.1 59.662 414 141 8 22 424 25 423 1.29e-159 457
Msa0816080 AT4G35620.1 59.286 420 137 10 22 426 27 427 4.55e-150 433
Msa0816080 AT1G76310.2 57.937 378 137 9 17 381 19 387 5.25e-144 416
Msa0816080 AT4G35620.2 59.091 374 120 9 22 381 27 381 2.22e-130 381
Msa0816080 AT1G76310.4 56.740 319 116 9 17 322 19 328 8.76e-112 332
Msa0816080 AT3G11520.1 38.987 395 214 8 51 426 26 412 2.53e-86 270
Msa0816080 AT1G20590.1 69.364 173 53 0 230 402 63 235 5.56e-86 263
Msa0816080 AT5G06150.1 36.643 423 224 8 27 424 30 433 3.51e-85 268
Msa0816080 AT2G26760.1 46.183 262 138 3 151 410 109 369 1.61e-78 248
Msa0816080 AT1G16330.1 44.444 279 153 1 141 419 366 642 5.13e-78 254
Msa0816080 AT4G37490.1 44.718 284 150 4 147 424 140 422 9.01e-76 243
Msa0816080 AT3G11520.2 39.429 350 185 8 51 381 26 367 2.38e-75 240
Msa0816080 AT1G77390.1 39.405 269 155 4 155 416 162 429 2.21e-59 200
Msa0816080 AT5G25380.3 35.638 376 220 10 51 415 59 423 3.01e-58 197
Msa0816080 AT5G25380.1 35.638 376 220 10 51 415 59 423 3.01e-58 197
Msa0816080 AT5G25380.4 34.921 378 226 9 51 415 59 429 1.19e-57 196
Msa0816080 AT5G25380.2 35.580 371 217 10 51 410 59 418 2.98e-57 194
Msa0816080 AT5G11300.1 39.759 332 183 9 100 416 94 423 9.67e-57 193
Msa0816080 AT5G43080.2 37.548 261 160 3 157 415 73 332 3.46e-55 187
Msa0816080 AT5G06150.2 36.585 328 162 9 27 329 30 336 1.03e-54 185
Msa0816080 AT1G44110.1 37.050 278 167 4 146 416 169 445 1.39e-54 188
Msa0816080 AT1G47210.2 39.552 268 152 5 157 415 88 354 1.38e-53 183
Msa0816080 AT5G43080.1 36.842 266 160 4 157 415 73 337 6.39e-53 181
Msa0816080 AT1G15570.1 39.700 267 153 4 156 415 173 438 6.75e-53 183
Msa0816080 AT1G80370.1 39.700 267 153 4 156 415 182 447 6.85e-53 184
Msa0816080 AT5G11300.2 42.105 285 148 9 100 369 94 376 3.43e-52 181
Msa0816080 AT1G47220.1 39.925 268 151 5 157 415 42 308 7.50e-52 177
Msa0816080 AT1G47230.1 36.154 260 157 4 165 415 88 347 8.05e-48 168
Msa0816080 AT1G47230.2 36.015 261 157 5 165 415 88 348 4.00e-46 163
Msa0816080 AT1G34460.2 31.987 297 155 6 27 319 142 395 2.38e-37 142
Msa0816080 AT1G34460.4 31.987 297 155 6 27 319 142 395 2.38e-37 142
Msa0816080 AT1G34460.9 30.982 326 167 9 9 319 102 384 5.95e-37 141
Msa0816080 AT1G34460.6 31.667 300 155 7 27 319 142 398 8.37e-37 140
Msa0816080 AT1G34460.3 31.667 300 155 7 27 319 142 398 8.37e-37 140
Msa0816080 AT1G34460.8 31.667 300 155 7 27 319 142 398 8.37e-37 140
Msa0816080 AT1G34460.1 31.667 300 155 7 27 319 142 398 8.37e-37 140
Msa0816080 AT1G34460.5 31.667 300 155 7 27 319 142 398 1.14e-36 140
Msa0816080 AT1G34460.7 31.667 300 155 7 27 319 142 398 1.16e-36 140
Msa0816080 AT1G14750.1 33.696 184 119 2 203 383 385 568 7.28e-21 95.5
Msa0816080 AT1G14750.3 33.696 184 119 2 203 383 385 568 8.18e-21 95.5
Msa0816080 AT1G47210.1 44.762 105 54 3 157 258 88 191 1.31e-20 89.7
Msa0816080 AT1G14750.2 33.696 184 119 2 203 383 217 400 1.64e-20 93.6
Msa0816080 AT1G14750.4 33.696 184 118 3 203 383 217 399 2.29e-19 90.1

Find 102 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAATTAACTTTCATAAA+TGG 0.119270 5_3:+49948157 Msa0816080:three_prime_UTR
CAGAGAATGCTCTAGTTTAA+TGG 0.170801 5_3:+49947975 Msa0816080:intron
CCATTTCCAGAACTTCTTTC+CGG 0.210345 5_3:-49946850 None:intergenic
TTTCATGAGAAGGTTCTTAA+AGG 0.288446 5_3:+49947188 Msa0816080:CDS
GGGTGTGATTAATCAGAATT+TGG 0.301953 5_3:+49944691 Msa0816080:CDS
AAATCAAGTTCAAATGGATT+TGG 0.319295 5_3:+49945507 Msa0816080:CDS
AACAATTAACTTTCATAAAT+GGG 0.326556 5_3:+49948158 Msa0816080:three_prime_UTR
TGGTTTAGTGGCAATGCTTT+TGG 0.341737 5_3:+49946757 Msa0816080:CDS
GTTCCCATTGAACATAATAA+TGG 0.345729 5_3:+49948342 Msa0816080:three_prime_UTR
CTGTGTTTCACCAAACTATA+TGG 0.349277 5_3:+49946376 Msa0816080:CDS
CATTTCCAGAACTTCTTTCC+GGG 0.354928 5_3:-49946849 None:intergenic
ATTTCCATTATTATGTTCAA+TGG 0.354955 5_3:-49948346 None:intergenic
GCTGGGACAGGGAAACTTAC+AGG 0.367597 5_3:+49948015 Msa0816080:CDS
GCTTCAGTTGGTTGGTTTAG+TGG 0.367934 5_3:+49946745 Msa0816080:CDS
TGAAAGGATGAGGGCTATAC+TGG 0.375569 5_3:+49946418 Msa0816080:CDS
TTCTCCAGAAGAAAACTTGC+TGG 0.385990 5_3:-49948090 None:intergenic
ATGGGAATTTACTAATACTA+AGG 0.400084 5_3:+49948218 Msa0816080:three_prime_UTR
AATCAAACCTTCAAAATTTG+TGG 0.408902 5_3:-49944522 None:intergenic
AGTTGAGATGGAGGATATCA+TGG 0.409043 5_3:+49945826 Msa0816080:CDS
TTGGCAAAATCAAGTTCAAA+TGG 0.410685 5_3:+49945501 Msa0816080:CDS
TGCTCTAAAGCCATTGGCAC+TGG 0.419967 5_3:-49945576 None:intergenic
GCAAGAGGGTCATTTGCATC+AGG 0.421294 5_3:-49945875 None:intergenic
TAAGCAACTTGGGTTGCAAT+GGG 0.430023 5_3:+49948194 Msa0816080:three_prime_UTR
GGGGTGTCAATGTCCATAAC+AGG 0.441867 5_3:-49945854 None:intergenic
TCTGTTTGCTCTAAAGCCAT+TGG 0.446717 5_3:-49945582 None:intergenic
TTTCCATTATTATGTTCAAT+GGG 0.449092 5_3:-49948345 None:intergenic
CTAGTGATGGGTCGATGAAC+CGG 0.449551 5_3:-49944903 None:intergenic
TGAGAAGAAACAAGCGGATC+CGG 0.456269 5_3:+49944884 Msa0816080:CDS
CTTATAGGAGGAAGTTGAGA+TGG 0.464867 5_3:+49945814 Msa0816080:intron
AATTGCTGTGCCATATAGTT+TGG 0.468094 5_3:-49946386 None:intergenic
TATCATGGAAGAGCCTGTTA+TGG 0.468278 5_3:+49945841 Msa0816080:CDS
TCTGGAGAACGAGTTGTAGC+TGG 0.469456 5_3:+49948104 Msa0816080:exon
GGGTTAGATTCTAGAAAGGT+TGG 0.473549 5_3:+49944650 Msa0816080:CDS
ATCAAACCTTCAAAATTTGT+GGG 0.477220 5_3:-49944521 None:intergenic
TTGACATTAATGAAAGGATG+AGG 0.477955 5_3:+49946408 Msa0816080:CDS
GGCACTGGCTGATCCTCCAC+TGG 0.480548 5_3:-49945561 None:intergenic
GAGTTGATCTTCAGAGTAGT+TGG 0.480770 5_3:-49947502 None:intergenic
GTTGACTTTCACAAGAAGGC+TGG 0.486106 5_3:+49947997 Msa0816080:CDS
TTTCACAAGAAGGCTGGGAC+AGG 0.486235 5_3:+49948003 Msa0816080:CDS
AACTTGGGTTGCAATGGGGA+TGG 0.488491 5_3:+49948199 Msa0816080:three_prime_UTR
ACAGCTCAATGCACTATGTA+TGG 0.490108 5_3:+49947444 Msa0816080:CDS
AAGAATGTTGTAAGCAACTT+GGG 0.494197 5_3:+49948184 Msa0816080:three_prime_UTR
CCGGAAAGAAGTTCTGGAAA+TGG 0.494858 5_3:+49946850 Msa0816080:CDS
GGGCAAAACAGAAGAGCATT+GGG 0.497902 5_3:+49944671 Msa0816080:CDS
TGGAAGATCCTAAAAGAAGA+AGG 0.500448 5_3:-49944416 None:intergenic
AGGAGGGTTAGATTCTAGAA+AGG 0.500876 5_3:+49944646 Msa0816080:intron
GGTTAGATTCTAGAAAGGTT+GGG 0.502394 5_3:+49944651 Msa0816080:CDS
TAAGAATGTTGTAAGCAACT+TGG 0.502923 5_3:+49948183 Msa0816080:three_prime_UTR
ATACACCCGGAAAGAAGTTC+TGG 0.504153 5_3:+49946844 Msa0816080:CDS
ACTTGGGTTGCAATGGGGAT+GGG 0.504185 5_3:+49948200 Msa0816080:three_prime_UTR
ACTGGTTGACTGGCTTATTG+AGG 0.508362 5_3:+49946436 Msa0816080:CDS
TGGGCAAAACAGAAGAGCAT+TGG 0.511695 5_3:+49944670 Msa0816080:CDS
AACTACCAAAAGGTCAAACT+TGG 0.515338 5_3:+49945482 Msa0816080:CDS
AGAAAGAAGCTTCAGTTGGT+TGG 0.515982 5_3:+49946737 Msa0816080:CDS
AATCAGAATTTGGTTGTGGA+AGG 0.518311 5_3:+49944701 Msa0816080:CDS
TGATCTGATTCACTATGCAT+TGG 0.523177 5_3:-49945606 None:intergenic
ATCAATTCCTCACCTAGTGA+TGG 0.523848 5_3:-49944916 None:intergenic
AATGGTTGACTTTCACAAGA+AGG 0.528684 5_3:+49947993 Msa0816080:CDS
GCAGCGGCAGCTAGTTGAGA+AGG 0.533466 5_3:-49947414 None:intergenic
TTGTTAACAACACAAGGATA+AGG 0.536421 5_3:-49944728 None:intergenic
ATAGGAGGAAGTTGAGATGG+AGG 0.543444 5_3:+49945817 Msa0816080:intron
CGGTTCATCGACCCATCACT+AGG 0.545956 5_3:+49944904 Msa0816080:CDS
GAACCTTCTCATGAAAACAT+AGG 0.546868 5_3:-49947181 None:intergenic
GATTAATCAGAATTTGGTTG+TGG 0.548543 5_3:+49944697 Msa0816080:CDS
ATCCTTGTGTTGTTAACAAG+AGG 0.554542 5_3:+49944732 Msa0816080:CDS
TGAGGGCTATACTGGTTGAC+TGG 0.555400 5_3:+49946426 Msa0816080:CDS
GGAGGATCAGCCAGTGCCAA+TGG 0.555755 5_3:+49945566 Msa0816080:CDS
CTCTTACTACAGAAAAGTTG+AGG 0.560855 5_3:+49945925 Msa0816080:CDS
AGCAATTTGACATTAATGAA+AGG 0.565905 5_3:+49946402 Msa0816080:CDS
TCCTTGTGTTGTTAACAAGA+GGG 0.566377 5_3:+49944733 Msa0816080:CDS
TTGAATAGGGAACTACCAAA+AGG 0.566910 5_3:+49945472 Msa0816080:intron
CAAGAGGGTCATTTGCATCA+GGG 0.569803 5_3:-49945874 None:intergenic
TTGACTTTCACAAGAAGGCT+GGG 0.569949 5_3:+49947998 Msa0816080:CDS
GCATAGTGAATCAGATCAGA+TGG 0.570421 5_3:+49945611 Msa0816080:CDS
GAAGTTTCAGTGCCTGTGGT+TGG 0.581724 5_3:+49946794 Msa0816080:CDS
GTAAGCAACTTGGGTTGCAA+TGG 0.583489 5_3:+49948193 Msa0816080:three_prime_UTR
GGTAAGAAAGAAGCTTCAGT+TGG 0.588907 5_3:+49946733 Msa0816080:CDS
CTCATGAAAACATAGGCTGT+CGG 0.589074 5_3:-49947174 None:intergenic
TCAATTCCTCACCTAGTGAT+GGG 0.589190 5_3:-49944915 None:intergenic
TGACATTAATGAAAGGATGA+GGG 0.591362 5_3:+49946409 Msa0816080:CDS
CATGAGAAGGTTCTTAAAGG+CGG 0.594323 5_3:+49947191 Msa0816080:CDS
GGAAGATCCTAAAAGAAGAA+GGG 0.596454 5_3:-49944415 None:intergenic
AAGAGGGTCATTTGCATCAG+GGG 0.596917 5_3:-49945873 None:intergenic
ATATATTCAGCAACTGCAAG+AGG 0.601924 5_3:-49945890 None:intergenic
TCAAACCTTCAAAATTTGTG+GGG 0.605336 5_3:-49944520 None:intergenic
GCCCTCTTGTTAACAACACA+AGG 0.607827 5_3:-49944734 None:intergenic
GACAAGTAAAACACTGAGTG+AGG 0.608578 5_3:-49948251 None:intergenic
AGAATTAGATCTCCAACCAC+AGG 0.618555 5_3:-49946806 None:intergenic
TATCAGACAGAGCATACACC+CGG 0.634548 5_3:+49946831 Msa0816080:CDS
AGTGGAGTAAGACATGTGAA+TGG 0.637958 5_3:+49947475 Msa0816080:CDS
TTCACAAGAAGGCTGGGACA+GGG 0.640634 5_3:+49948004 Msa0816080:CDS
AATCATTAGTAGCTAAGCTG+TGG 0.652274 5_3:-49948127 None:intergenic
TGAGGAAGTTTCAGTGCCTG+TGG 0.654299 5_3:+49946790 Msa0816080:CDS
TATATTCAGCAACTGCAAGA+GGG 0.656026 5_3:-49945889 None:intergenic
GGAAACTTACAGGAGCACAT+AGG 0.667527 5_3:+49948025 Msa0816080:CDS
TGATGAACACAAGCCAGTGG+AGG 0.670864 5_3:+49945548 Msa0816080:CDS
GAAACAATGTCTCATGCATG+AGG 0.677202 5_3:-49946667 None:intergenic
CTATGTATGGTGTCAAACAG+TGG 0.683237 5_3:+49947457 Msa0816080:CDS
TTGAGCTGTATAGACAGCAG+CGG 0.686693 5_3:-49947430 None:intergenic
TGATGATGAACACAAGCCAG+TGG 0.720589 5_3:+49945545 Msa0816080:CDS
TGTTTGTGAGAAGAAACAAG+CGG 0.747744 5_3:+49944878 Msa0816080:CDS
AAGCAACTTGGGTTGCAATG+GGG 0.774444 5_3:+49948195 Msa0816080:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAACTAAAATTTAAAAAA+AGG - chr5_3:49945690-49945709 None:intergenic 10.0%
!! TAGTTATGATAAAAAAAAAA+TGG - chr5_3:49947270-49947289 None:intergenic 10.0%
!! AAAGATTGAAAATTTCAAAA+TGG + chr5_3:49944558-49944577 Msa0816080:intron 15.0%
!! AAGATTGAAAATTTCAAAAT+GGG + chr5_3:49944559-49944578 Msa0816080:intron 15.0%
!!! TTAATTGTTTTTGTGATAAT+AGG + chr5_3:49944626-49944645 Msa0816080:intron 15.0%
!!! AATATCTTTGTTTTTTCTTA+TGG - chr5_3:49945005-49945024 None:intergenic 15.0%
!! TATTAGCTAATTAAATAAAC+AGG - chr5_3:49945651-49945670 None:intergenic 15.0%
!! AAAACAATAATTGAATGTAA+TGG + chr5_3:49946051-49946070 Msa0816080:intron 15.0%
!!! AAAATTCAAGAGTATAAATT+TGG - chr5_3:49946249-49946268 None:intergenic 15.0%
!!! ATTTGTTATTGAAATTTGAT+TGG - chr5_3:49946330-49946349 None:intergenic 15.0%
!! CTATATAAAAAAAAAGGTTA+TGG - chr5_3:49947894-49947913 None:intergenic 15.0%
!! AAACAATTAACTTTCATAAA+TGG + chr5_3:49948157-49948176 Msa0816080:three_prime_UTR 15.0%
!! AACAATTAACTTTCATAAAT+GGG + chr5_3:49948158-49948177 Msa0816080:three_prime_UTR 15.0%
!!! TGTGAATTTGTTTTCTTTTT+TGG + chr5_3:49944808-49944827 Msa0816080:intron 20.0%
!!! TTGTTTTCTTTTTTGGTTTT+TGG + chr5_3:49944815-49944834 Msa0816080:intron 20.0%
!! GAAATTCAAATTACACTAAA+GGG - chr5_3:49944970-49944989 None:intergenic 20.0%
!! AGAAATTCAAATTACACTAA+AGG - chr5_3:49944971-49944990 None:intergenic 20.0%
!! TTTAGTGTAATTTGAATTTC+TGG + chr5_3:49944970-49944989 Msa0816080:intron 20.0%
!! TCTTGATTTACTGTTATATT+AGG + chr5_3:49945318-49945337 Msa0816080:intron 20.0%
!! CAACAACTAAAATTTGAAAA+AGG - chr5_3:49945778-49945797 None:intergenic 20.0%
!!! CATTTGGATTTTATTTCAAA+TGG + chr5_3:49945985-49946004 Msa0816080:intron 20.0%
!! TTTCAGAATTCCAATTAATA+TGG + chr5_3:49946295-49946314 Msa0816080:intron 20.0%
!! GAAATAATTGCCATATTAAT+TGG - chr5_3:49946308-49946327 None:intergenic 20.0%
!! ATTAATCCTATATTTAATCC+AGG - chr5_3:49946518-49946537 None:intergenic 20.0%
!!! ATTTGTGTGTAAAATTTTGT+AGG + chr5_3:49947110-49947129 Msa0816080:intron 20.0%
!! ATGATAAAAAAAAAATGGCA+TGG - chr5_3:49947265-49947284 None:intergenic 20.0%
!! GTATTTGTAATTAGTAACTA+TGG - chr5_3:49947299-49947318 None:intergenic 20.0%
!! ATATAACAAAATGACATCAT+AGG + chr5_3:49947823-49947842 Msa0816080:intron 20.0%
!! TATAACAAAATGACATCATA+GGG + chr5_3:49947824-49947843 Msa0816080:intron 20.0%
!! TTTCCATTATTATGTTCAAT+GGG - chr5_3:49948348-49948367 None:intergenic 20.0%
!! ATTTCCATTATTATGTTCAA+TGG - chr5_3:49948349-49948368 None:intergenic 20.0%
! TGAAGATCCTTGAAAAAAAA+TGG - chr5_3:49944387-49944406 None:intergenic 25.0%
!!! GATCTTCCATTTTTTTTTGT+GGG + chr5_3:49944430-49944449 Msa0816080:five_prime_UTR 25.0%
!! AGAAAAAATGAAGTTTTCTG+AGG + chr5_3:49944478-49944497 Msa0816080:exon 25.0%
! ATCAAACCTTCAAAATTTGT+GGG - chr5_3:49944524-49944543 None:intergenic 25.0%
! AATCAAACCTTCAAAATTTG+TGG - chr5_3:49944525-49944544 None:intergenic 25.0%
!!! ATTGTTTTTGTGATAATAGG+AGG + chr5_3:49944629-49944648 Msa0816080:intron 25.0%
!!! TTGTTTTTGTGATAATAGGA+GGG + chr5_3:49944630-49944649 Msa0816080:intron 25.0%
! ATTCACAATCACAAAAAGAA+GGG - chr5_3:49944795-49944814 None:intergenic 25.0%
! AATTCACAATCACAAAAAGA+AGG - chr5_3:49944796-49944815 None:intergenic 25.0%
!!! TGGTTTTTGGTTTTGATTTT+TGG + chr5_3:49944828-49944847 Msa0816080:intron 25.0%
!! GAATTGATGATTTAAGTTTC+TGG + chr5_3:49944931-49944950 Msa0816080:intron 25.0%
!! TGTAATTTGAATTTCTGGAT+TGG + chr5_3:49944975-49944994 Msa0816080:intron 25.0%
! TTGAGATAAGTGTTTGAATT+TGG + chr5_3:49945023-49945042 Msa0816080:intron 25.0%
!!! ATGCTACATAGTTTTTGATT+TGG - chr5_3:49945061-49945080 None:intergenic 25.0%
!! AAGTTTTGCTAAAATGATGA+TGG + chr5_3:49945290-49945309 Msa0816080:intron 25.0%
! TGATTTACTGTTATATTAGG+AGG + chr5_3:49945321-49945340 Msa0816080:intron 25.0%
!! AAATCAAGTTCAAATGGATT+TGG + chr5_3:49945507-49945526 Msa0816080:CDS 25.0%
! CTGCAAATAATTGATCTTAT+AGG + chr5_3:49945712-49945731 Msa0816080:intron 25.0%
! CAAATAATTGATCTTATAGG+AGG + chr5_3:49945715-49945734 Msa0816080:intron 25.0%
! AGCAATTTGACATTAATGAA+AGG + chr5_3:49946402-49946421 Msa0816080:CDS 25.0%
! AGTAAGCATTATCCATATTT+GGG - chr5_3:49946607-49946626 None:intergenic 25.0%
! AAGTAAGCATTATCCATATT+TGG - chr5_3:49946608-49946627 None:intergenic 25.0%
!! CAATCTTATAGACAGATTTT+TGG + chr5_3:49946697-49946716 Msa0816080:CDS 25.0%
! CACAAATGCTATAAATGTAA+AGG - chr5_3:49946908-49946927 None:intergenic 25.0%
! CTTTACATTTATAGCATTTG+TGG + chr5_3:49946906-49946925 Msa0816080:intron 25.0%
!!! TCATCGGAATTTTTAGAAAA+AGG - chr5_3:49947078-49947097 None:intergenic 25.0%
! AAATGGCATGGAAATATATT+AGG - chr5_3:49947253-49947272 None:intergenic 25.0%
! ATGGGAATTTACTAATACTA+AGG + chr5_3:49948218-49948237 Msa0816080:three_prime_UTR 25.0%
!!! CTCTCTTCCATTTTTTTTCA+AGG + chr5_3:49944377-49944396 Msa0816080:five_prime_UTR 30.0%
!!! GGATCTTCCATTTTTTTTTG+TGG + chr5_3:49944429-49944448 Msa0816080:five_prime_UTR 30.0%
ACACAACCCACAAAAAAAAA+TGG - chr5_3:49944439-49944458 None:intergenic 30.0%
TCAAACCTTCAAAATTTGTG+GGG - chr5_3:49944523-49944542 None:intergenic 30.0%
GATTAATCAGAATTTGGTTG+TGG + chr5_3:49944697-49944716 Msa0816080:CDS 30.0%
TTGTTAACAACACAAGGATA+AGG - chr5_3:49944731-49944750 None:intergenic 30.0%
!!! TGGTTTTGATTTTTGGTTTG+TGG + chr5_3:49944835-49944854 Msa0816080:intron 30.0%
!!! GGTTTTGATTTTTGGTTTGT+GGG + chr5_3:49944836-49944855 Msa0816080:intron 30.0%
!! GATGATTTAAGTTTCTGGTT+TGG + chr5_3:49944936-49944955 Msa0816080:intron 30.0%
! GCATTGACAATTCAGATTAT+TGG + chr5_3:49945077-49945096 Msa0816080:intron 30.0%
! TTTAACCACATCTGATAATG+TGG - chr5_3:49945132-49945151 None:intergenic 30.0%
!! TCATTTTAGCAAAACTTGCA+TGG - chr5_3:49945287-49945306 None:intergenic 30.0%
! GGTAGAATCTTTTATTCCTT+TGG + chr5_3:49945385-49945404 Msa0816080:intron 30.0%
ATGTAGCAAAATTTCACCAA+AGG - chr5_3:49945404-49945423 None:intergenic 30.0%
! GAAATTTTGCTACATTGTAC+AGG + chr5_3:49945409-49945428 Msa0816080:intron 30.0%
CACTCAAAATCTTAGTCAAA+AGG - chr5_3:49945441-49945460 None:intergenic 30.0%
!! TTGACTAAGATTTTGAGTGT+TGG + chr5_3:49945442-49945461 Msa0816080:intron 30.0%
!! TGACTAAGATTTTGAGTGTT+GGG + chr5_3:49945443-49945462 Msa0816080:intron 30.0%
TTGGCAAAATCAAGTTCAAA+TGG + chr5_3:49945501-49945520 Msa0816080:CDS 30.0%
AGAACACTTATCTGATCATT+TGG + chr5_3:49945969-49945988 Msa0816080:intron 30.0%
AAATGCTTCCTTTGACATTA+GGG - chr5_3:49946172-49946191 None:intergenic 30.0%
TAAATGCTTCCTTTGACATT+AGG - chr5_3:49946173-49946192 None:intergenic 30.0%
TTGACATTAATGAAAGGATG+AGG + chr5_3:49946408-49946427 Msa0816080:CDS 30.0%
TGACATTAATGAAAGGATGA+GGG + chr5_3:49946409-49946428 Msa0816080:CDS 30.0%
! CAAGTCAATAGCATTTTTCA+AGG - chr5_3:49946492-49946511 None:intergenic 30.0%
AATCCTATATTTAATCCAGG+AGG - chr5_3:49946515-49946534 None:intergenic 30.0%
! ATTTAATTTCCCCCCAAATA+TGG + chr5_3:49946592-49946611 Msa0816080:intron 30.0%
TAAGCATTATCCATATTTGG+GGG - chr5_3:49946605-49946624 None:intergenic 30.0%
GTAAGCATTATCCATATTTG+GGG - chr5_3:49946606-49946625 None:intergenic 30.0%
CTACTGCAATATTATGGTTT+AGG - chr5_3:49947049-49947068 None:intergenic 30.0%
AAATCTCAGTTACTTGTCAT+CGG - chr5_3:49947094-49947113 None:intergenic 30.0%
! GTGTAAAATTTTGTAGGAGA+AGG + chr5_3:49947116-49947135 Msa0816080:intron 30.0%
TTTCATGAGAAGGTTCTTAA+AGG + chr5_3:49947188-49947207 Msa0816080:CDS 30.0%
TAAGAATGTTGTAAGCAACT+TGG + chr5_3:49948183-49948202 Msa0816080:three_prime_UTR 30.0%
AAGAATGTTGTAAGCAACTT+GGG + chr5_3:49948184-49948203 Msa0816080:three_prime_UTR 30.0%
GTTCCCATTGAACATAATAA+TGG + chr5_3:49948342-49948361 Msa0816080:three_prime_UTR 30.0%
GGAAGATCCTAAAAGAAGAA+GGG - chr5_3:49944418-49944437 None:intergenic 35.0%
TGGAAGATCCTAAAAGAAGA+AGG - chr5_3:49944419-49944438 None:intergenic 35.0%
! AACAACCCCACAAATTTTGA+AGG + chr5_3:49944515-49944534 Msa0816080:CDS 35.0%
! GGTTAGATTCTAGAAAGGTT+GGG + chr5_3:49944651-49944670 Msa0816080:CDS 35.0%
GGGTGTGATTAATCAGAATT+TGG + chr5_3:49944691-49944710 Msa0816080:CDS 35.0%
AATCAGAATTTGGTTGTGGA+AGG + chr5_3:49944701-49944720 Msa0816080:CDS 35.0%
! ATCCTTGTGTTGTTAACAAG+AGG + chr5_3:49944732-49944751 Msa0816080:CDS 35.0%
! TCCTTGTGTTGTTAACAAGA+GGG + chr5_3:49944733-49944752 Msa0816080:CDS 35.0%
TGTTTGTGAGAAGAAACAAG+CGG + chr5_3:49944878-49944897 Msa0816080:CDS 35.0%
GTGACATGTAGATGTAGATA+CGG - chr5_3:49945191-49945210 None:intergenic 35.0%
GTATCTACATCTACATGTCA+CGG + chr5_3:49945190-49945209 Msa0816080:intron 35.0%
CACAAAAACATCTAATGCTG+AGG + chr5_3:49945364-49945383 Msa0816080:CDS 35.0%
!! GACTAAGATTTTGAGTGTTG+GGG + chr5_3:49945444-49945463 Msa0816080:intron 35.0%
TGTTGGGGTCAATTTGAATA+GGG + chr5_3:49945459-49945478 Msa0816080:intron 35.0%
TTGAATAGGGAACTACCAAA+AGG + chr5_3:49945472-49945491 Msa0816080:intron 35.0%
AACTACCAAAAGGTCAAACT+TGG + chr5_3:49945482-49945501 Msa0816080:CDS 35.0%
! TTTTGCCAAGTTTGACCTTT+TGG - chr5_3:49945490-49945509 None:intergenic 35.0%
TGATCTGATTCACTATGCAT+TGG - chr5_3:49945609-49945628 None:intergenic 35.0%
! AGTTGTTGACTGCAAGTAAT+TGG + chr5_3:49945790-49945809 Msa0816080:intron 35.0%
!! CTGCAAGTAATTGGTCTTAT+AGG + chr5_3:49945799-49945818 Msa0816080:intron 35.0%
!! CAAGTAATTGGTCTTATAGG+AGG + chr5_3:49945802-49945821 Msa0816080:intron 35.0%
TATATTCAGCAACTGCAAGA+GGG - chr5_3:49945892-49945911 None:intergenic 35.0%
ATATATTCAGCAACTGCAAG+AGG - chr5_3:49945893-49945912 None:intergenic 35.0%
CTCTTACTACAGAAAAGTTG+AGG + chr5_3:49945925-49945944 Msa0816080:CDS 35.0%
CAGAAAAGTTGAGGTACATT+TGG + chr5_3:49945934-49945953 Msa0816080:intron 35.0%
CTAAAATTTGAAGGTGGATG+TGG - chr5_3:49946118-49946137 None:intergenic 35.0%
!! TCCACCTTCAAATTTTAGTG+TGG + chr5_3:49946120-49946139 Msa0816080:intron 35.0%
ACCACACTAAAATTTGAAGG+TGG - chr5_3:49946124-49946143 None:intergenic 35.0%
GCAACCACACTAAAATTTGA+AGG - chr5_3:49946127-49946146 None:intergenic 35.0%
CTGTGTTTCACCAAACTATA+TGG + chr5_3:49946376-49946395 Msa0816080:CDS 35.0%
AATTGCTGTGCCATATAGTT+TGG - chr5_3:49946389-49946408 None:intergenic 35.0%
TCAAGGTATAGTGATTCAGA+AGG - chr5_3:49946475-49946494 None:intergenic 35.0%
TTGCCTCCTGGATTAAATAT+AGG + chr5_3:49946509-49946528 Msa0816080:intron 35.0%
AAGCATTATCCATATTTGGG+GGG - chr5_3:49946604-49946623 None:intergenic 35.0%
ATTTGTCATGCACCTGAAAA+GGG - chr5_3:49946643-49946662 None:intergenic 35.0%
AATTTGTCATGCACCTGAAA+AGG - chr5_3:49946644-49946663 None:intergenic 35.0%
!! ATTTTTGGAAAAGCAGTCTG+TGG + chr5_3:49946712-49946731 Msa0816080:CDS 35.0%
GGTGACATTGAAAATCTTTG+TGG + chr5_3:49946985-49947004 Msa0816080:intron 35.0%
! AATTTTGTAGGAGAAGGTGA+TGG + chr5_3:49947122-49947141 Msa0816080:intron 35.0%
GAACCTTCTCATGAAAACAT+AGG - chr5_3:49947184-49947203 None:intergenic 35.0%
! TCTAGTTCCAACTAAATCGA+AGG + chr5_3:49947553-49947572 Msa0816080:intron 35.0%
GAATAAGCCTTCGATTTAGT+TGG - chr5_3:49947563-49947582 None:intergenic 35.0%
AAAACTATGCGCAATTGTGT+TGG + chr5_3:49947595-49947614 Msa0816080:intron 35.0%
! CAGAGAATGCTCTAGTTTAA+TGG + chr5_3:49947975-49947994 Msa0816080:intron 35.0%
! AATGGTTGACTTTCACAAGA+AGG + chr5_3:49947993-49948012 Msa0816080:CDS 35.0%
AATCATTAGTAGCTAAGCTG+TGG - chr5_3:49948130-49948149 None:intergenic 35.0%
! TTTCACGCCCTTCTTCTTTT+AGG + chr5_3:49944408-49944427 Msa0816080:five_prime_UTR 40.0%
! AGGAGGGTTAGATTCTAGAA+AGG + chr5_3:49944646-49944665 Msa0816080:intron 40.0%
! GGGTTAGATTCTAGAAAGGT+TGG + chr5_3:49944650-49944669 Msa0816080:CDS 40.0%
TCAATTCCTCACCTAGTGAT+GGG - chr5_3:49944918-49944937 None:intergenic 40.0%
ATCAATTCCTCACCTAGTGA+TGG - chr5_3:49944919-49944938 None:intergenic 40.0%
GTGTTGGGGTCAATTTGAAT+AGG + chr5_3:49945458-49945477 Msa0816080:intron 40.0%
!! TCTGTTTGCTCTAAAGCCAT+TGG - chr5_3:49945585-49945604 None:intergenic 40.0%
GCATAGTGAATCAGATCAGA+TGG + chr5_3:49945611-49945630 Msa0816080:CDS 40.0%
CTTATAGGAGGAAGTTGAGA+TGG + chr5_3:49945814-49945833 Msa0816080:intron 40.0%
AGTTGAGATGGAGGATATCA+TGG + chr5_3:49945826-49945845 Msa0816080:CDS 40.0%
TATCATGGAAGAGCCTGTTA+TGG + chr5_3:49945841-49945860 Msa0816080:CDS 40.0%
AACACATGTCAGTGTGACAA+TGG - chr5_3:49946083-49946102 None:intergenic 40.0%
! GTCACACTGACATGTGTTTT+TGG + chr5_3:49946085-49946104 Msa0816080:intron 40.0%
! GTTTTGCATGAACCCTTTTC+AGG + chr5_3:49946628-49946647 Msa0816080:intron 40.0%
GAAACAATGTCTCATGCATG+AGG - chr5_3:49946670-49946689 None:intergenic 40.0%
GGTAAGAAAGAAGCTTCAGT+TGG + chr5_3:49946733-49946752 Msa0816080:CDS 40.0%
AGAAAGAAGCTTCAGTTGGT+TGG + chr5_3:49946737-49946756 Msa0816080:CDS 40.0%
! TGGTTTAGTGGCAATGCTTT+TGG + chr5_3:49946757-49946776 Msa0816080:CDS 40.0%
AGAATTAGATCTCCAACCAC+AGG - chr5_3:49946809-49946828 None:intergenic 40.0%
CATTTCCAGAACTTCTTTCC+GGG - chr5_3:49946852-49946871 None:intergenic 40.0%
CCATTTCCAGAACTTCTTTC+CGG - chr5_3:49946853-49946872 None:intergenic 40.0%
ACCTTGGTTGTGATATTGAG+TGG - chr5_3:49946934-49946953 None:intergenic 40.0%
!!! GGACTGCAGTTTTAAAACCT+TGG - chr5_3:49946950-49946969 None:intergenic 40.0%
TCTGCGCTACTGCAATATTA+TGG - chr5_3:49947055-49947074 None:intergenic 40.0%
CTCATGAAAACATAGGCTGT+CGG - chr5_3:49947177-49947196 None:intergenic 40.0%
! CAGCCTATGTTTTCATGAGA+AGG + chr5_3:49947178-49947197 Msa0816080:CDS 40.0%
CATGAGAAGGTTCTTAAAGG+CGG + chr5_3:49947191-49947210 Msa0816080:CDS 40.0%
ACAGCTCAATGCACTATGTA+TGG + chr5_3:49947444-49947463 Msa0816080:CDS 40.0%
! CTATGTATGGTGTCAAACAG+TGG + chr5_3:49947457-49947476 Msa0816080:CDS 40.0%
AGTGGAGTAAGACATGTGAA+TGG + chr5_3:49947475-49947494 Msa0816080:CDS 40.0%
! GAGTTGATCTTCAGAGTAGT+TGG - chr5_3:49947505-49947524 None:intergenic 40.0%
GAGATCAAAAGACTATGCGT+CGG + chr5_3:49947747-49947766 Msa0816080:intron 40.0%
TTGACTTTCACAAGAAGGCT+GGG + chr5_3:49947998-49948017 Msa0816080:CDS 40.0%
! TGAACCAGCAAGTTTTCTTC+TGG + chr5_3:49948086-49948105 Msa0816080:CDS 40.0%
TTCTCCAGAAGAAAACTTGC+TGG - chr5_3:49948093-49948112 None:intergenic 40.0%
! TAAGCAACTTGGGTTGCAAT+GGG + chr5_3:49948194-49948213 Msa0816080:three_prime_UTR 40.0%
GACAAGTAAAACACTGAGTG+AGG - chr5_3:49948254-49948273 None:intergenic 40.0%
! TGGGCAAAACAGAAGAGCAT+TGG + chr5_3:49944670-49944689 Msa0816080:CDS 45.0%
!! GGGCAAAACAGAAGAGCATT+GGG + chr5_3:49944671-49944690 Msa0816080:CDS 45.0%
GCCCTCTTGTTAACAACACA+AGG - chr5_3:49944737-49944756 None:intergenic 45.0%
!! TTGGTTTGTGGGTGTATCAC+AGG + chr5_3:49944847-49944866 Msa0816080:intron 45.0%
TGAGAAGAAACAAGCGGATC+CGG + chr5_3:49944884-49944903 Msa0816080:CDS 45.0%
! CACATCTGATAATGTGGCGT+CGG - chr5_3:49945126-49945145 None:intergenic 45.0%
! TGATGATGAACACAAGCCAG+TGG + chr5_3:49945545-49945564 Msa0816080:CDS 45.0%
ATAGGAGGAAGTTGAGATGG+AGG + chr5_3:49945817-49945836 Msa0816080:intron 45.0%
AAGAGGGTCATTTGCATCAG+GGG - chr5_3:49945876-49945895 None:intergenic 45.0%
CAAGAGGGTCATTTGCATCA+GGG - chr5_3:49945877-49945896 None:intergenic 45.0%
ATTTGAAGGTGGATGTGGAC+AGG - chr5_3:49946113-49946132 None:intergenic 45.0%
TGGTTGAGCCCTAATGTCAA+AGG + chr5_3:49946161-49946180 Msa0816080:intron 45.0%
TGAAAGGATGAGGGCTATAC+TGG + chr5_3:49946418-49946437 Msa0816080:CDS 45.0%
!! ACTGGTTGACTGGCTTATTG+AGG + chr5_3:49946436-49946455 Msa0816080:CDS 45.0%
!! AATGCTATTGACTTGCCTCC+TGG + chr5_3:49946497-49946516 Msa0816080:intron 45.0%
!! GCTTCAGTTGGTTGGTTTAG+TGG + chr5_3:49946745-49946764 Msa0816080:CDS 45.0%
! GCTTTTGGCATGCAAGTATG+AGG + chr5_3:49946772-49946791 Msa0816080:CDS 45.0%
TATCAGACAGAGCATACACC+CGG + chr5_3:49946831-49946850 Msa0816080:CDS 45.0%
ATACACCCGGAAAGAAGTTC+TGG + chr5_3:49946844-49946863 Msa0816080:CDS 45.0%
!! CCGGAAAGAAGTTCTGGAAA+TGG + chr5_3:49946850-49946869 Msa0816080:CDS 45.0%
GCCACTCAATATCACAACCA+AGG + chr5_3:49946930-49946949 Msa0816080:intron 45.0%
! TAGCAGCTCAAGCTGTTTCA+TGG - chr5_3:49947340-49947359 None:intergenic 45.0%
TTGAGCTGTATAGACAGCAG+CGG - chr5_3:49947433-49947452 None:intergenic 45.0%
! GTTGACTTTCACAAGAAGGC+TGG + chr5_3:49947997-49948016 Msa0816080:CDS 45.0%
! GGAAACTTACAGGAGCACAT+AGG + chr5_3:49948025-49948044 Msa0816080:CDS 45.0%
! GTAAGCAACTTGGGTTGCAA+TGG + chr5_3:49948193-49948212 Msa0816080:three_prime_UTR 45.0%
! AAGCAACTTGGGTTGCAATG+GGG + chr5_3:49948195-49948214 Msa0816080:three_prime_UTR 45.0%
!! TAATAACTATATAAAAAAAA+AGG - chr5_3:49947900-49947919 None:intergenic 5.0%
!! CTAGTGATGGGTCGATGAAC+CGG - chr5_3:49944906-49944925 None:intergenic 50.0%
CGACGCCACATTATCAGATG+TGG + chr5_3:49945124-49945143 Msa0816080:intron 50.0%
TGATGAACACAAGCCAGTGG+AGG + chr5_3:49945548-49945567 Msa0816080:CDS 50.0%
!! TGCTCTAAAGCCATTGGCAC+TGG - chr5_3:49945579-49945598 None:intergenic 50.0%
! GGGGTGTCAATGTCCATAAC+AGG - chr5_3:49945857-49945876 None:intergenic 50.0%
GCAAGAGGGTCATTTGCATC+AGG - chr5_3:49945878-49945897 None:intergenic 50.0%
GGTTGCTACATATACCGCTC+TGG + chr5_3:49946141-49946160 Msa0816080:intron 50.0%
ACATTAGGGCTCAACCAGAG+CGG - chr5_3:49946158-49946177 None:intergenic 50.0%
! TGAGGGCTATACTGGTTGAC+TGG + chr5_3:49946426-49946445 Msa0816080:CDS 50.0%
TGAGGAAGTTTCAGTGCCTG+TGG + chr5_3:49946790-49946809 Msa0816080:CDS 50.0%
GAAGTTTCAGTGCCTGTGGT+TGG + chr5_3:49946794-49946813 Msa0816080:CDS 50.0%
CAGTCCTCTTGCAGTTTCTG+CGG + chr5_3:49946964-49946983 Msa0816080:intron 50.0%
! GCTCAAGCTGTTTCATGGTG+AGG - chr5_3:49947335-49947354 None:intergenic 50.0%
TTTCACAAGAAGGCTGGGAC+AGG + chr5_3:49948003-49948022 Msa0816080:CDS 50.0%
TTCACAAGAAGGCTGGGACA+GGG + chr5_3:49948004-49948023 Msa0816080:CDS 50.0%
TCTGGAGAACGAGTTGTAGC+TGG + chr5_3:49948104-49948123 Msa0816080:exon 50.0%
! AACTTGGGTTGCAATGGGGA+TGG + chr5_3:49948199-49948218 Msa0816080:three_prime_UTR 50.0%
! ACTTGGGTTGCAATGGGGAT+GGG + chr5_3:49948200-49948219 Msa0816080:three_prime_UTR 50.0%
CGGTTCATCGACCCATCACT+AGG + chr5_3:49944904-49944923 Msa0816080:CDS 55.0%
CATCGACCCATCACTAGGTG+AGG + chr5_3:49944909-49944928 Msa0816080:intron 55.0%
CACGGTGTCTCTGTCATGTC+AGG + chr5_3:49945208-49945227 Msa0816080:intron 55.0%
GTCACCGCAGAAACTGCAAG+AGG - chr5_3:49946971-49946990 None:intergenic 55.0%
GCTGGGACAGGGAAACTTAC+AGG + chr5_3:49948015-49948034 Msa0816080:CDS 55.0%
GGAGGATCAGCCAGTGCCAA+TGG + chr5_3:49945566-49945585 Msa0816080:CDS 60.0%
GCAGCGGCAGCTAGTTGAGA+AGG - chr5_3:49947417-49947436 None:intergenic 60.0%
!! GGCACTGGCTGATCCTCCAC+TGG - chr5_3:49945564-49945583 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 49944337 49948404 49944337 ID=Msa0816080;Name=Msa0816080
chr5_3 mRNA 49944337 49948404 49944337 ID=Msa0816080-mRNA-1;Parent=Msa0816080;Name=Msa0816080-mRNA-1;_AED=0.12;_eAED=0.12;_QI=148|1|1|1|1|1|11|282|428
chr5_3 exon 49944337 49944536 49944337 ID=Msa0816080-mRNA-1:exon:15046;Parent=Msa0816080-mRNA-1
chr5_3 exon 49944648 49944765 49944648 ID=Msa0816080-mRNA-1:exon:15047;Parent=Msa0816080-mRNA-1
chr5_3 exon 49944869 49944925 49944869 ID=Msa0816080-mRNA-1:exon:15048;Parent=Msa0816080-mRNA-1
chr5_3 exon 49945340 49945385 49945340 ID=Msa0816080-mRNA-1:exon:15049;Parent=Msa0816080-mRNA-1
chr5_3 exon 49945480 49945632 49945480 ID=Msa0816080-mRNA-1:exon:15050;Parent=Msa0816080-mRNA-1
chr5_3 exon 49945821 49945946 49945821 ID=Msa0816080-mRNA-1:exon:15051;Parent=Msa0816080-mRNA-1
chr5_3 exon 49946368 49946457 49946368 ID=Msa0816080-mRNA-1:exon:15052;Parent=Msa0816080-mRNA-1
chr5_3 exon 49946650 49946871 49946650 ID=Msa0816080-mRNA-1:exon:15053;Parent=Msa0816080-mRNA-1
chr5_3 exon 49947132 49947230 49947132 ID=Msa0816080-mRNA-1:exon:15054;Parent=Msa0816080-mRNA-1
chr5_3 exon 49947348 49947526 49947348 ID=Msa0816080-mRNA-1:exon:15055;Parent=Msa0816080-mRNA-1
chr5_3 exon 49947978 49948404 49947978 ID=Msa0816080-mRNA-1:exon:15056;Parent=Msa0816080-mRNA-1
chr5_3 five_prime_UTR 49944337 49944484 49944337 ID=Msa0816080-mRNA-1:five_prime_utr;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49944485 49944536 49944485 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49944648 49944765 49944648 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49944869 49944925 49944869 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49945340 49945385 49945340 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49945480 49945632 49945480 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49945821 49945946 49945821 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49946368 49946457 49946368 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49946650 49946871 49946650 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49947132 49947230 49947132 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49947348 49947526 49947348 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 CDS 49947978 49948122 49947978 ID=Msa0816080-mRNA-1:cds;Parent=Msa0816080-mRNA-1
chr5_3 three_prime_UTR 49948123 49948404 49948123 ID=Msa0816080-mRNA-1:three_prime_utr;Parent=Msa0816080-mRNA-1
Gene Sequence

>Msa0816080

ATGAAGTTTTCTGAGGAGAAGAATGTTTCTAACAACCCCACAAATTTTGAAGGAGGGTTAGATTCTAGAAAGGTTGGGCAAAACAGAAGAGCATTGGGTGTGATTAATCAGAATTTGGTTGTGGAAGGACGTCCTTATCCTTGTGTTGTTAACAAGAGGGCATTGTCAGAGAGAAATGATGTTTGTGAGAAGAAACAAGCGGATCCGGTTCATCGACCCATCACTAGGAGGTTTGCTGCAAAGATTGCTAGCACAAAAACATCTAATGCTGAGGGAACTACCAAAAGGTCAAACTTGGCAAAATCAAGTTCAAATGGATTTGGAGATTTCATATTTGTTGATGATGAACACAAGCCAGTGGAGGATCAGCCAGTGCCAATGGCTTTAGAGCAAACAGAACCAATGCATAGTGAATCAGATCAGATGGAGGAAGTTGAGATGGAGGATATCATGGAAGAGCCTGTTATGGACATTGACACCCCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATATTGAAGATCTTTACTCTTACTACAGAAAAGTTGAGAGTACTAGCTGTGTTTCACCAAACTATATGGCACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTGGTTGACTGGCTTATTGAGGTGCATGACAAATTCGACCTCATGCATGAGACATTGTTTCTCACTGTCAATCTTATAGACAGATTTTTGGAAAAGCAGTCTGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTTTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACAGAGCATACACCCGGAAAGAAGTTCTGGAAATGGAGAAGGTGATGGTCAATGCATTGAAGTTTAACATATCTGTGCCGACAGCCTATGTTTTCATGAGAAGGTTCTTAAAGGCGGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTCTTGATTGAGCTATCTCTTGTAGAATATGCAATGTTGAAGTTCTCTCCTTCTCAACTAGCTGCCGCTGCTGTCTATACAGCTCAATGCACTATGTATGGTGTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCTGAAGATCAACTCTTAGAATGCTCTAGTTTAATGGTTGACTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGAGCACATAGGAAGTATTGCACATCAAAATTTAGCTATACTGCGAAATGTGAACCAGCAAGTTTTCTTCTGGAGAACGAGTTGTAG

Protein sequence

>Msa0816080

MKFSEEKNVSNNPTNFEGGLDSRKVGQNRRALGVINQNLVVEGRPYPCVVNKRALSERNDVCEKKQADPVHRPITRRFAAKIASTKTSNAEGTTKRSNLAKSSSNGFGDFIFVDDEHKPVEDQPVPMALEQTEPMHSESDQMEEVEMEDIMEEPVMDIDTPDANDPLAVAEYIEDLYSYYRKVESTSCVSPNYMAQQFDINERMRAILVDWLIEVHDKFDLMHETLFLTVNLIDRFLEKQSVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYTRKEVLEMEKVMVNALKFNISVPTAYVFMRRFLKAAQADRKLELLAFFLIELSLVEYAMLKFSPSQLAAAAVYTAQCTMYGVKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFSYTAKCEPASFLLENEL*