AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168380 MtrunA17_Chr1g0184781 98.358 609 8 1 1 607 1 609 0.0 1208
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168380 AT3G54650.1 58.863 598 194 9 28 605 27 592 0.0 642

Find 165 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATGCTTTCTCTTGTTCT+TGG 0.137595 1_4:+50942399 Msa0168380:CDS
ATTGCCACTTCTTGAACTTA+TGG 0.229544 1_4:+50942915 Msa0168380:CDS
AGATTACTTGAGGTCACATT+AGG 0.296935 1_4:-50942783 None:intergenic
ATGCCCTAATCTGGAATCTA+TGG 0.302684 1_4:+50940803 Msa0168380:CDS
TCTTGTAGAAATCTGCATTC+AGG 0.308829 1_4:+50943244 Msa0168380:CDS
ATAAGGAACCCGAACCCTTT+TGG 0.310964 1_4:-50943752 None:intergenic
TATGCTTGATGATTAGCTTT+TGG 0.316735 1_4:-50943041 None:intergenic
ACCTCGCCACTAAGTAAATA+AGG 0.317400 1_4:-50943769 None:intergenic
GGAGTTGAAGCTTAGGGTTC+CGG 0.327873 1_4:+50940282 Msa0168380:CDS
CGGCGAGCGCTTTCGTTTGA+CGG 0.335154 1_4:+50939989 Msa0168380:CDS
ACCGCCGGCGGGATTGTTAT+CGG 0.335562 1_4:+50940201 Msa0168380:CDS
GTGGTGGTTGTGGTGGAAAC+TGG 0.336712 1_4:-50939884 None:intergenic
ATGGAAGGTTGTTCTAATCT+AGG 0.345750 1_4:+50941450 Msa0168380:CDS
TTCTGTACCGTCTGCGGTCT+CGG 0.351169 1_4:+50939940 Msa0168380:CDS
CTGACTTTGTTACCTGACTT+TGG 0.352864 1_4:-50943452 None:intergenic
CGGGTTCCTTATTTACTTAG+TGG 0.355932 1_4:+50943763 Msa0168380:CDS
TTGGAAAATGTTCATGCAAC+AGG 0.363021 1_4:+50943402 Msa0168380:CDS
CATAACTATGATTGAAGGAT+TGG 0.367458 1_4:+50941727 Msa0168380:CDS
GATTGATTCGAGCGGTTTGC+CGG 0.370129 1_4:+50940147 Msa0168380:CDS
CTCTGGGCAGTTTAAGTATA+GGG 0.378634 1_4:-50943200 None:intergenic
CGGCGTGGTGGTGGTGGTTG+TGG 0.382786 1_4:-50939894 None:intergenic
TCTCCATAGATTCCAGATTA+GGG 0.385939 1_4:-50940806 None:intergenic
ACAAACTGAGTTTCTTTAAA+CGG 0.387577 1_4:-50943065 None:intergenic
AGGTCAAGCAACTCTAGATT+TGG 0.388297 1_4:-50942468 None:intergenic
GATGAGATACAGTTTCATCT+AGG 0.395077 1_4:-50944344 None:intergenic
TGTTCATGCAACAGGTTGTC+AGG 0.400235 1_4:+50943410 Msa0168380:CDS
CGACGGAGGAGTTGAAGCTT+AGG 0.401872 1_4:+50940275 Msa0168380:CDS
CTGATGGCTCCAAAAGGGTT+CGG 0.402880 1_4:+50943743 Msa0168380:CDS
CTCTTAGTGCTGCTCAATTG+AGG 0.407117 1_4:+50941819 Msa0168380:CDS
GCGGTTTGCCGGGGAATTTA+CGG 0.407564 1_4:+50940158 Msa0168380:CDS
AGATTCAGATCATTCAGCTC+TGG 0.409333 1_4:-50943217 None:intergenic
GCGGTTGGATCTGGGAAATT+AGG 0.409772 1_4:-50942961 None:intergenic
CTCAGTTTGTGGGGTTGCAC+CGG 0.411998 1_4:+50943078 Msa0168380:CDS
GCTCTGGGCAGTTTAAGTAT+AGG 0.415214 1_4:-50943201 None:intergenic
CTTGTATGAACTATGGTCTA+TGG 0.424935 1_4:+50944396 Msa0168380:three_prime_UTR
GATTACTTGAGGTCACATTA+GGG 0.425752 1_4:-50942782 None:intergenic
AAAGCCGCATTGAAGCTATA+TGG 0.425901 1_4:-50941778 None:intergenic
TGATGGCTCCAAAAGGGTTC+GGG 0.430597 1_4:+50943744 Msa0168380:CDS
TTTGAGGCTTTCGCTTAGAA+TGG 0.430849 1_4:+50940357 Msa0168380:CDS
AGGCTTGACGATAAAGCGTT+TGG 0.431841 1_4:+50940046 Msa0168380:CDS
ATCTCCATAGATTCCAGATT+AGG 0.431846 1_4:-50940807 None:intergenic
TATTACCTGTTTGGTAGCTA+AGG 0.432939 1_4:-50944291 None:intergenic
TTCAATTTAGGCTCTCAAAC+TGG 0.434062 1_4:+50944318 Msa0168380:three_prime_UTR
TGATGGAGATTTGTTGGATC+TGG 0.435930 1_4:+50940093 Msa0168380:CDS
ACCGCAACCAATCGGATCAA+TGG 0.439840 1_4:+50940843 Msa0168380:CDS
CCATCAGGTAGACGTTTAGA+AGG 0.443237 1_4:-50943727 None:intergenic
ATCGGCGGCGAAGGTGTGTA+AGG 0.445828 1_4:+50940219 Msa0168380:CDS
AAATACTCTTGTATGAACTA+TGG 0.446962 1_4:+50944389 Msa0168380:three_prime_UTR
GGCATAAGTGACAGTGGCAT+TGG 0.453603 1_4:+50942705 Msa0168380:CDS
ATTGATTCGAGCGGTTTGCC+GGG 0.457271 1_4:+50940148 Msa0168380:CDS
CCCATTGATCCGATTGGTTG+CGG 0.458118 1_4:-50940844 None:intergenic
CATCTAGTTTGTCTACACTT+TGG 0.463348 1_4:+50941490 Msa0168380:CDS
GTCAACCACCGTCGAATCTC+CGG 0.463535 1_4:+50939969 Msa0168380:CDS
AGATGGTGATGGAGATTTGT+TGG 0.464365 1_4:+50940087 Msa0168380:CDS
GTTGCTTCAGTGCCCCACTT+TGG 0.468923 1_4:+50943383 Msa0168380:CDS
TTTAAAGAAACTCAGTTTGT+GGG 0.470137 1_4:+50943068 Msa0168380:CDS
TGGAAGGTTGTTCTAATCTA+GGG 0.472778 1_4:+50941451 Msa0168380:CDS
GACCTCATAACTATGATTGA+AGG 0.473186 1_4:+50941722 Msa0168380:CDS
ATAACTATGATTGAAGGATT+GGG 0.473642 1_4:+50941728 Msa0168380:CDS
GTCTACCTGATGGCTCCAAA+AGG 0.478330 1_4:+50943737 Msa0168380:CDS
CCGCAACCAATCGGATCAAT+GGG 0.483382 1_4:+50940844 Msa0168380:CDS
GATTCAGATCATTCAGCTCT+GGG 0.484073 1_4:-50943216 None:intergenic
TCAATCTCCACATCTAGATC+TGG 0.486325 1_4:-50940130 None:intergenic
GAAGCTTAGGGTTCCGGTGA+AGG 0.494599 1_4:+50940288 Msa0168380:CDS
TTTCGTCAGCGGTTGGATCT+GGG 0.495746 1_4:-50942969 None:intergenic
TTTGTGGGGTTGCACCGGCT+TGG 0.495778 1_4:+50943083 Msa0168380:CDS
CGTGGTGGTGGTGGTTGTGG+TGG 0.497371 1_4:-50939891 None:intergenic
CGAAGGTGTGTAAGGGATGG+AGG 0.497940 1_4:+50940227 Msa0168380:CDS
TTCTGTATGGTGATGAAGGT+GGG 0.498440 1_4:+50944201 Msa0168380:three_prime_UTR
GGCGAATGGTTATCTATAGC+AGG 0.505677 1_4:-50943706 None:intergenic
ATCTACCGGCGTGGTGGTGG+TGG 0.506650 1_4:-50939900 None:intergenic
GTATGGTGATGAAGGTGGGC+TGG 0.507729 1_4:+50944205 Msa0168380:three_prime_UTR
GGGATTGTTATCGGCGGCGA+AGG 0.511793 1_4:+50940210 Msa0168380:CDS
TTATCCCTTAGCTACCAAAC+AGG 0.512331 1_4:+50944286 Msa0168380:three_prime_UTR
TGAATCTACCGGCGTGGTGG+TGG 0.515249 1_4:-50939903 None:intergenic
CATAGTTATGAGGTCAGTGC+TGG 0.516035 1_4:-50941714 None:intergenic
TCGATGCTGCAGAAATGTCC+TGG 0.517320 1_4:+50940331 Msa0168380:CDS
ATTACCTGTTTGGTAGCTAA+GGG 0.517417 1_4:-50944290 None:intergenic
GACGGAGGAGTTGAAGCTTA+GGG 0.522111 1_4:+50940276 Msa0168380:CDS
TATATGCTGTAGATTTGCAC+TGG 0.525532 1_4:-50943016 None:intergenic
GTTTAAAGAAACTCAGTTTG+TGG 0.528026 1_4:+50943067 Msa0168380:CDS
AGTCGAGGCTATCCAAAGTC+AGG 0.528185 1_4:+50943440 Msa0168380:CDS
TTGAGGAGGTTACCGCCGGC+GGG 0.528416 1_4:+50940190 Msa0168380:CDS
TTTGGTGATGGTGATGGAGA+TGG 0.530866 1_4:+50940064 Msa0168380:CDS
GCCGGGGAATTTACGGTGGG+AGG 0.530866 1_4:+50940165 Msa0168380:CDS
TCTTTGACACCGCAACCAAT+CGG 0.534722 1_4:+50940835 Msa0168380:CDS
AAAATTAGAATAAGTTTCAA+GGG 0.539109 1_4:-50944179 None:intergenic
TGGGAAATTAGGATCACATA+TGG 0.540618 1_4:-50942950 None:intergenic
CACAACCACCACCACCACGC+CGG 0.541400 1_4:+50939895 Msa0168380:CDS
ATCCTTCAATCATAGTTATG+AGG 0.542576 1_4:-50941724 None:intergenic
AAACCTCAAAAGCCTCAAGA+TGG 0.542982 1_4:+50941431 Msa0168380:CDS
TGATAATGCAGGGATGAACT+AGG 0.544759 1_4:+50941387 Msa0168380:intron
GGGAGACGGCGAGGAAGCTG+TGG 0.544858 1_4:+50940248 Msa0168380:CDS
ATGAGATACAGTTTCATCTA+GGG 0.546711 1_4:-50944343 None:intergenic
AATCCAACATGAACCTTCAC+CGG 0.547681 1_4:-50940301 None:intergenic
ACCTCCCACCGTAAATTCCC+CGG 0.549028 1_4:-50940166 None:intergenic
GTGTAAGGGATGGAGGGAGA+CGG 0.554978 1_4:+50940234 Msa0168380:CDS
TTTGAGGAGGTTACCGCCGG+CGG 0.555516 1_4:+50940189 Msa0168380:CDS
GGTCTTGACGATCGAGGCAG+TGG 0.555629 1_4:+50940010 Msa0168380:CDS
GCCGCGTCGCAATCTTCGCG+CGG 0.556729 1_4:+50939752 Msa0168380:CDS
AGCGCTCGCCGGAGATTCGA+CGG 0.559630 1_4:-50939977 None:intergenic
AGCGAAAGCCTCAAAATCCC+AGG 0.560281 1_4:-50940349 None:intergenic
TAGAACAACCTTCCATCTTG+AGG 0.561903 1_4:-50941443 None:intergenic
GGCTTTCGCTTAGAATGGAA+AGG 0.562043 1_4:+50940362 Msa0168380:CDS
GACGATAAAGCGTTTGGTGA+TGG 0.566160 1_4:+50940052 Msa0168380:CDS
TCTACCTGATGGCTCCAAAA+GGG 0.566567 1_4:+50943738 Msa0168380:CDS
CTCTAGATTTGGATAGCTTG+AGG 0.571915 1_4:-50942457 None:intergenic
CGATGCTGCAGAAATGTCCT+GGG 0.572129 1_4:+50940332 Msa0168380:CDS
CGTCAAACGAAAGCGCTCGC+CGG 0.573225 1_4:-50939988 None:intergenic
TTGTCAGGATTTGTTAGTCG+AGG 0.573290 1_4:+50943425 Msa0168380:CDS
TAGAGTTGCTTGACCTCAGT+GGG 0.573574 1_4:+50942475 Msa0168380:CDS
CCTTCTAAACGTCTACCTGA+TGG 0.573862 1_4:+50943727 Msa0168380:CDS
TCCTTATTTACTTAGTGGCG+AGG 0.573887 1_4:+50943768 Msa0168380:CDS
TCTGCACTCTCTGTCTAAGA+TGG 0.574052 1_4:+50941521 Msa0168380:CDS
TCACATTAGGGCAAAGAGCA+AGG 0.574084 1_4:-50942770 None:intergenic
GTAATACCCATTGATCCGAT+TGG 0.575015 1_4:-50940850 None:intergenic
CGGCGAAGGTGTGTAAGGGA+TGG 0.576084 1_4:+50940224 Msa0168380:CDS
GATGGAGATGGAGATGGTGA+TGG 0.577421 1_4:+50940076 Msa0168380:CDS
AAAGCGTTTGGTGATGGTGA+TGG 0.580418 1_4:+50940058 Msa0168380:CDS
GAAGGTGTGTAAGGGATGGA+GGG 0.586174 1_4:+50940228 Msa0168380:CDS
CGATGAATCTACCGGCGTGG+TGG 0.586581 1_4:-50939906 None:intergenic
GTTCCGGTGAAGGTTCATGT+TGG 0.588296 1_4:+50940298 Msa0168380:CDS
CTCAAAAGCCTCAAGATGGA+AGG 0.589378 1_4:+50941435 Msa0168380:CDS
GCGCGAAGATTGCGACGCGG+CGG 0.590060 1_4:-50939750 None:intergenic
TATCGTTTCTGTACCGTCTG+CGG 0.597284 1_4:+50939934 Msa0168380:CDS
CAGTCCATAAGTTCAAGAAG+TGG 0.599028 1_4:-50942919 None:intergenic
ACTTCCGTGTAATGTGCTTG+TGG 0.602265 1_4:+50944148 Msa0168380:CDS
CCAACCGCTGACGAAAATAA+CGG 0.604163 1_4:+50942976 Msa0168380:CDS
GTTTGCCGGGGAATTTACGG+TGG 0.606443 1_4:+50940161 Msa0168380:CDS
AAACGTGGTAGTTACAATTG+TGG 0.606563 1_4:+50939815 Msa0168380:CDS
TTGATTCGAGCGGTTTGCCG+GGG 0.608114 1_4:+50940149 Msa0168380:CDS
AGGGATGGAGGGAGACGGCG+AGG 0.611493 1_4:+50940239 Msa0168380:CDS
GCAGTGGACTTGATCTGTTG+AGG 0.615827 1_4:+50940026 Msa0168380:CDS
CGAATCACCGAGACCGCAGA+CGG 0.619376 1_4:-50939947 None:intergenic
ATTGAAACTCACATCCAAGC+CGG 0.620954 1_4:-50943097 None:intergenic
CAGTCCACAAGCACATTACA+CGG 0.620998 1_4:-50944152 None:intergenic
GCCGATAACAATCCCGCCGG+CGG 0.621466 1_4:-50940202 None:intergenic
TTAAAGAAACTCAGTTTGTG+GGG 0.625994 1_4:+50943069 Msa0168380:CDS
TTTGCCGGGGAATTTACGGT+GGG 0.626036 1_4:+50940162 Msa0168380:CDS
TCGGCGGCGAAGGTGTGTAA+GGG 0.627171 1_4:+50940220 Msa0168380:CDS
GATGGTGATGGAGATGGAGA+TGG 0.627985 1_4:+50940070 Msa0168380:CDS
GAGGAAGCTGTGGAAAGCGA+CGG 0.628768 1_4:+50940258 Msa0168380:CDS
GCCGCCGATAACAATCCCGC+CGG 0.629360 1_4:-50940205 None:intergenic
GCGTCGCAATCTTCGCGCGG+CGG 0.632203 1_4:+50939755 Msa0168380:CDS
GGAAGGTTGTTCTAATCTAG+GGG 0.635613 1_4:+50941452 Msa0168380:CDS
AGTTACAATTGTGGACGTTG+TGG 0.636586 1_4:+50939824 Msa0168380:CDS
TAGACAAACTAGATGAAGAG+AGG 0.636819 1_4:-50941482 None:intergenic
GTAGACGTTTAGAAGGCGAA+TGG 0.637230 1_4:-50943720 None:intergenic
TCTAGAACCAGATCTAGATG+TGG 0.637574 1_4:+50940123 Msa0168380:CDS
TTTGACGGTCTTGACGATCG+AGG 0.640367 1_4:+50940004 Msa0168380:CDS
TTTCTGTATGGTGATGAAGG+TGG 0.640839 1_4:+50944200 Msa0168380:three_prime_UTR
CTTCTTGAACTTATGGACTG+TGG 0.641932 1_4:+50942922 Msa0168380:CDS
ATAGATAACGATGAATCTAC+CGG 0.642583 1_4:-50939914 None:intergenic
AGTGAAATCTCTCTCAGCTG+CGG 0.645007 1_4:-50941668 None:intergenic
CTAGAGTTGCTTGACCTCAG+TGG 0.647313 1_4:+50942474 Msa0168380:CDS
GAAGCTGTGGAAAGCGACGG+AGG 0.650091 1_4:+50940261 Msa0168380:CDS
GAAGGTTGTTCTAATCTAGG+GGG 0.651856 1_4:+50941453 Msa0168380:CDS
GCCGCGCGAAGATTGCGACG+CGG 0.672682 1_4:-50939753 None:intergenic
GCCGGCGGGATTGTTATCGG+CGG 0.681604 1_4:+50940204 Msa0168380:CDS
AGATCTGGCATAAGTGACAG+TGG 0.684251 1_4:+50942699 Msa0168380:intron
TAACGATGAATCTACCGGCG+TGG 0.708007 1_4:-50939909 None:intergenic
GCTCGCCGGAGATTCGACGG+TGG 0.736622 1_4:-50939974 None:intergenic
GATGTGGAGATTGATTCGAG+CGG 0.746668 1_4:+50940139 Msa0168380:CDS
ACATCCATATAGCTTCAATG+CGG 0.786151 1_4:+50941774 Msa0168380:CDS
GTACAGATTCATACCCACTG+AGG 0.831236 1_4:-50942488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTCAATTTATTAATTAAT+TGG + chr1_4:50940561-50940580 Msa0168380:intron 10.0%
!! AATTTATTAATTAATTGGTT+TGG + chr1_4:50940566-50940585 Msa0168380:intron 10.0%
!! CTAATTTAATCATGAATTAA+TGG + chr1_4:50940445-50940464 Msa0168380:intron 15.0%
!!! ATATCTGAAATTTAAATCTT+CGG - chr1_4:50941220-50941239 None:intergenic 15.0%
!! AATACACACTAATAAAAATT+AGG + chr1_4:50942138-50942157 Msa0168380:intron 15.0%
!! CTTTGATTATAATTTATCTA+TGG - chr1_4:50942587-50942606 None:intergenic 15.0%
!! TAAAAAAGAATATGCATTAA+TGG - chr1_4:50943139-50943158 None:intergenic 15.0%
!!! ATTAATGCATATTCTTTTTT+AGG + chr1_4:50943138-50943157 Msa0168380:intron 15.0%
!!! GACTATTTTCATTTATTAAT+TGG + chr1_4:50943348-50943367 Msa0168380:intron 15.0%
!! TTTCACATTCAAAATAAAAT+CGG - chr1_4:50944051-50944070 None:intergenic 15.0%
!! AAAATTAGAATAAGTTTCAA+GGG - chr1_4:50944182-50944201 None:intergenic 15.0%
!! AAAAATTAGAATAAGTTTCA+AGG - chr1_4:50944183-50944202 None:intergenic 15.0%
!!! AGGTAATAATTTTTCAATTT+AGG + chr1_4:50944306-50944325 Msa0168380:three_prime_UTR 15.0%
!!! ACTTTATTTCATTAAAAATG+AGG - chr1_4:50944429-50944448 None:intergenic 15.0%
!!! TTTCTTTCCTTTTTTTGTAT+CGG - chr1_4:50939798-50939817 None:intergenic 20.0%
!! AATTAATCTTATTCTTAACG+TGG - chr1_4:50940405-50940424 None:intergenic 20.0%
!!! TTAATTGGTTTGGTTATAAA+AGG + chr1_4:50940576-50940595 Msa0168380:intron 20.0%
!! AAAAGGATGATGAAAAAAAT+TGG + chr1_4:50940593-50940612 Msa0168380:intron 20.0%
!! ACAATAAATTGCCAAATAAA+AGG - chr1_4:50941849-50941868 None:intergenic 20.0%
!! AGCATTGTAGTTAAAATAAT+TGG - chr1_4:50942111-50942130 None:intergenic 20.0%
!! TCCAAATATACAATTAATCA+GGG + chr1_4:50942371-50942390 Msa0168380:intron 20.0%
!!! TTTTTAAAATGTATTTGCCT+TGG + chr1_4:50942532-50942551 Msa0168380:intron 20.0%
!! TTTAAGAAATCAAGTTTGAT+GGG + chr1_4:50942663-50942682 Msa0168380:intron 20.0%
!!! TTCTTTTCAAAATTATTTGC+AGG + chr1_4:50943177-50943196 Msa0168380:intron 20.0%
!!! TTATTTGATAGTTACAAAAC+AGG - chr1_4:50943286-50943305 None:intergenic 20.0%
!! AGTCAATCATACAATTTAAA+AGG - chr1_4:50943332-50943351 None:intergenic 20.0%
!! AAAACATATTGTGTTTATCT+AGG + chr1_4:50943825-50943844 Msa0168380:intron 20.0%
!!! AAGAAAAATTGGATTTTCTA+GGG + chr1_4:50943979-50943998 Msa0168380:intron 20.0%
!!! CTTATTCTAATTTTTCTGTA+TGG + chr1_4:50944188-50944207 Msa0168380:three_prime_UTR 20.0%
!! TTGAAAAATTATTACCTGTT+TGG - chr1_4:50944303-50944322 None:intergenic 20.0%
!!! TTACAGTTATGTCCTTTTTT+GGG - chr1_4:50939854-50939873 None:intergenic 25.0%
!!! ATTACAGTTATGTCCTTTTT+TGG - chr1_4:50939855-50939874 None:intergenic 25.0%
!! TTCTATGTGTAATGAGTTTT+CGG + chr1_4:50940917-50940936 Msa0168380:intron 25.0%
! TCTAAGTATGCAATTAATGT+TGG + chr1_4:50940950-50940969 Msa0168380:intron 25.0%
!! TTTTATACAATGTGAAAGTG+AGG + chr1_4:50940984-50941003 Msa0168380:intron 25.0%
! CAAAGTTACAATCTATAACA+TGG - chr1_4:50941160-50941179 None:intergenic 25.0%
! ACATTATTAGCATATATGCA+TGG + chr1_4:50941312-50941331 Msa0168380:intron 25.0%
!! AACCAATGCTTTTAAATTGT+AGG + chr1_4:50941634-50941653 Msa0168380:intron 25.0%
!! TACCTACAATTTAAAAGCAT+TGG - chr1_4:50941639-50941658 None:intergenic 25.0%
! ATAACTATGATTGAAGGATT+GGG + chr1_4:50941728-50941747 Msa0168380:CDS 25.0%
!! CTACAAACTTTTATAACAGA+TGG - chr1_4:50941916-50941935 None:intergenic 25.0%
! ATATATTTATCCGAAACTCA+TGG + chr1_4:50942239-50942258 Msa0168380:intron 25.0%
! ATTAATATCTTCAACTGAGT+GGG - chr1_4:50942342-50942361 None:intergenic 25.0%
! GTCCAAATATACAATTAATC+AGG + chr1_4:50942370-50942389 Msa0168380:intron 25.0%
! CCAAATATACAATTAATCAG+GGG + chr1_4:50942372-50942391 Msa0168380:intron 25.0%
! CAAATATACAATTAATCAGG+GGG + chr1_4:50942373-50942392 Msa0168380:intron 25.0%
! TGATTTCTTAAACAAAGACA+TGG - chr1_4:50942655-50942674 None:intergenic 25.0%
! GTTTAAGAAATCAAGTTTGA+TGG + chr1_4:50942662-50942681 Msa0168380:intron 25.0%
!!! TGAGTTTTGTGAAATAATTG+AGG - chr1_4:50942819-50942838 None:intergenic 25.0%
! ACAAACTGAGTTTCTTTAAA+CGG - chr1_4:50943068-50943087 None:intergenic 25.0%
! TTTAAAGAAACTCAGTTTGT+GGG + chr1_4:50943068-50943087 Msa0168380:CDS 25.0%
!! ATTTATTAATTGGTTCAGAG+AGG + chr1_4:50943358-50943377 Msa0168380:intron 25.0%
! GTTTGTTTGATATTTATTCC+AGG + chr1_4:50943623-50943642 Msa0168380:intron 25.0%
!!! GCATATTTTAAATTAGAACC+AGG - chr1_4:50943653-50943672 None:intergenic 25.0%
!!! ATGCTTTATGATTTGTTTGT+AGG + chr1_4:50943669-50943688 Msa0168380:intron 25.0%
!! ATATTGTGTTTATCTAGGAT+GGG + chr1_4:50943830-50943849 Msa0168380:intron 25.0%
! AAAGTAAGTTTGTGTATCAA+TGG + chr1_4:50943901-50943920 Msa0168380:intron 25.0%
!! AAAATCCAATTTTTCTTCTG+TGG - chr1_4:50943976-50943995 None:intergenic 25.0%
!! GAAGAAAAATTGGATTTTCT+AGG + chr1_4:50943978-50943997 Msa0168380:intron 25.0%
! AAATACTCTTGTATGAACTA+TGG + chr1_4:50944389-50944408 Msa0168380:three_prime_UTR 25.0%
GAAAGTTCCGATACAAAAAA+AGG + chr1_4:50939788-50939807 Msa0168380:CDS 30.0%
ACAAAAAAAGGAAAGAAACG+TGG + chr1_4:50939800-50939819 Msa0168380:CDS 30.0%
ATAGATAACGATGAATCTAC+CGG - chr1_4:50939917-50939936 None:intergenic 30.0%
AGATCGATGCACAAAAAAAT+AGG + chr1_4:50940528-50940547 Msa0168380:intron 30.0%
CATAGAAGCAGCAAAAAAAA+GGG - chr1_4:50940904-50940923 None:intergenic 30.0%
ACATAGAAGCAGCAAAAAAA+AGG - chr1_4:50940905-50940924 None:intergenic 30.0%
! ATAGATTTTAGATCCGTGTT+TGG + chr1_4:50941059-50941078 Msa0168380:intron 30.0%
CCAATTAATAATGCCAAACA+CGG - chr1_4:50941075-50941094 None:intergenic 30.0%
TTCAAATGCCATGATGTAAA+TGG + chr1_4:50941112-50941131 Msa0168380:intron 30.0%
GATTTCATCCATTTACATCA+TGG - chr1_4:50941123-50941142 None:intergenic 30.0%
CTGAAATTTAAATCTTCGGT+GGG - chr1_4:50941216-50941235 None:intergenic 30.0%
! TCTGAAATTTAAATCTTCGG+TGG - chr1_4:50941217-50941236 None:intergenic 30.0%
! TTGTTCAACTATGATAATGC+AGG + chr1_4:50941376-50941395 Msa0168380:intron 30.0%
! TGTTCAACTATGATAATGCA+GGG + chr1_4:50941377-50941396 Msa0168380:intron 30.0%
! TTCTTTTGTCAGCAACAAAT+CGG - chr1_4:50941413-50941432 None:intergenic 30.0%
TCAATATGAATGCAATCTCA+TGG - chr1_4:50941602-50941621 None:intergenic 30.0%
ATCCTTCAATCATAGTTATG+AGG - chr1_4:50941727-50941746 None:intergenic 30.0%
CATAACTATGATTGAAGGAT+TGG + chr1_4:50941727-50941746 Msa0168380:CDS 30.0%
! ATTGAGGTTTGCCTTTTATT+TGG + chr1_4:50941835-50941854 Msa0168380:intron 30.0%
! GTCTGTTTTCATGTTGTTAT+TGG + chr1_4:50941867-50941886 Msa0168380:intron 30.0%
!! CTATGTTTGGTCTTTTACAA+TGG - chr1_4:50942031-50942050 None:intergenic 30.0%
CATTGTAAAAGACCAAACAT+AGG + chr1_4:50942029-50942048 Msa0168380:intron 30.0%
TTTCGGATACTCATAACTTT+GGG - chr1_4:50942188-50942207 None:intergenic 30.0%
ATTTCGGATACTCATAACTT+TGG - chr1_4:50942189-50942208 None:intergenic 30.0%
CAGTTAAAAGATCGGAATTT+CGG - chr1_4:50942205-50942224 None:intergenic 30.0%
!! AATTCCGATCTTTTAACTGT+TGG + chr1_4:50942206-50942225 Msa0168380:intron 30.0%
TAGTCCAACAGTTAAAAGAT+CGG - chr1_4:50942213-50942232 None:intergenic 30.0%
!! TCTTTTAACTGTTGGACTAA+AGG + chr1_4:50942214-50942233 Msa0168380:intron 30.0%
CATTAATATCTTCAACTGAG+TGG - chr1_4:50942343-50942362 None:intergenic 30.0%
CCCCTGATTAATTGTATATT+TGG - chr1_4:50942375-50942394 None:intergenic 30.0%
ACTTCAACGTCAATAAGAAT+CGG - chr1_4:50942513-50942532 None:intergenic 30.0%
!! GAAGTCTTTTAAGTGTTTCA+GGG - chr1_4:50942749-50942768 None:intergenic 30.0%
!! AGAAGTCTTTTAAGTGTTTC+AGG - chr1_4:50942750-50942769 None:intergenic 30.0%
ATGTGACAAAAGATTACTTG+AGG - chr1_4:50942796-50942815 None:intergenic 30.0%
!!! TATGCTTGATGATTAGCTTT+TGG - chr1_4:50943044-50943063 None:intergenic 30.0%
GTTTAAAGAAACTCAGTTTG+TGG + chr1_4:50943067-50943086 Msa0168380:CDS 30.0%
TTAAAGAAACTCAGTTTGTG+GGG + chr1_4:50943069-50943088 Msa0168380:CDS 30.0%
TTACAAAACAGGAACATGAA+GGG - chr1_4:50943275-50943294 None:intergenic 30.0%
!! ATAATTTGTTGCAACTTACC+AGG + chr1_4:50943302-50943321 Msa0168380:intron 30.0%
TACAATTTAAAAGGAAGTCC+TGG - chr1_4:50943323-50943342 None:intergenic 30.0%
TGCAGAGAAAATTAGTTCAA+GGG - chr1_4:50943578-50943597 None:intergenic 30.0%
ATGCAGAGAAAATTAGTTCA+AGG - chr1_4:50943579-50943598 None:intergenic 30.0%
CATATTGTGTTTATCTAGGA+TGG + chr1_4:50943829-50943848 Msa0168380:intron 30.0%
!! ATTTTTCTGTATGGTGATGA+AGG + chr1_4:50944197-50944216 Msa0168380:three_prime_UTR 30.0%
ATGAGATACAGTTTCATCTA+GGG - chr1_4:50944346-50944365 None:intergenic 30.0%
! TTTTGTATCGGAACTTTCAG+CGG - chr1_4:50939786-50939805 None:intergenic 35.0%
AAACGTGGTAGTTACAATTG+TGG + chr1_4:50939815-50939834 Msa0168380:CDS 35.0%
!!! AGTTATGTCCTTTTTTGGGA+AGG - chr1_4:50939850-50939869 None:intergenic 35.0%
TCTTATTCTTAACGTGGATC+TGG - chr1_4:50940399-50940418 None:intergenic 35.0%
CACTGCAACATGAAACAAAT+CGG - chr1_4:50940746-50940765 None:intergenic 35.0%
!!! TGATTTTGATTCAACGATGC+TGG + chr1_4:50940764-50940783 Msa0168380:CDS 35.0%
TCTCCATAGATTCCAGATTA+GGG - chr1_4:50940809-50940828 None:intergenic 35.0%
ATCTCCATAGATTCCAGATT+AGG - chr1_4:50940810-50940829 None:intergenic 35.0%
CCGTGTTTGGCATTATTAAT+TGG + chr1_4:50941072-50941091 Msa0168380:intron 35.0%
GTAAATGGATGAAATCCTGA+TGG + chr1_4:50941127-50941146 Msa0168380:intron 35.0%
ATGGAAGGTTGTTCTAATCT+AGG + chr1_4:50941450-50941469 Msa0168380:CDS 35.0%
TGGAAGGTTGTTCTAATCTA+GGG + chr1_4:50941451-50941470 Msa0168380:CDS 35.0%
TAGACAAACTAGATGAAGAG+AGG - chr1_4:50941485-50941504 None:intergenic 35.0%
! CATCTAGTTTGTCTACACTT+TGG + chr1_4:50941490-50941509 Msa0168380:CDS 35.0%
!! AAAAGCATTGGTTAGCAACT+AGG - chr1_4:50941627-50941646 None:intergenic 35.0%
GACCTCATAACTATGATTGA+AGG + chr1_4:50941722-50941741 Msa0168380:CDS 35.0%
ACATCCATATAGCTTCAATG+CGG + chr1_4:50941774-50941793 Msa0168380:CDS 35.0%
!! GTTTGGTCTTTTACAATGGT+TGG - chr1_4:50942027-50942046 None:intergenic 35.0%
ATTCGACATGATCCTATGTT+TGG - chr1_4:50942044-50942063 None:intergenic 35.0%
ATTATGCACACCATGAGTTT+CGG - chr1_4:50942252-50942271 None:intergenic 35.0%
GATTACTTGAGGTCACATTA+GGG - chr1_4:50942785-50942804 None:intergenic 35.0%
AGATTACTTGAGGTCACATT+AGG - chr1_4:50942786-50942805 None:intergenic 35.0%
! ATTGCCACTTCTTGAACTTA+TGG + chr1_4:50942915-50942934 Msa0168380:CDS 35.0%
TGGGAAATTAGGATCACATA+TGG - chr1_4:50942953-50942972 None:intergenic 35.0%
!! TTTTCCGTTATTTTCGTCAG+CGG - chr1_4:50942983-50943002 None:intergenic 35.0%
TATATGCTGTAGATTTGCAC+TGG - chr1_4:50943019-50943038 None:intergenic 35.0%
TCTTGTAGAAATCTGCATTC+AGG + chr1_4:50943244-50943263 Msa0168380:CDS 35.0%
GTTACAAAACAGGAACATGA+AGG - chr1_4:50943276-50943295 None:intergenic 35.0%
! CATGAACATTTTCCAAAGTG+GGG - chr1_4:50943398-50943417 None:intergenic 35.0%
! GCATGAACATTTTCCAAAGT+GGG - chr1_4:50943399-50943418 None:intergenic 35.0%
! TGCATGAACATTTTCCAAAG+TGG - chr1_4:50943400-50943419 None:intergenic 35.0%
TTGGAAAATGTTCATGCAAC+AGG + chr1_4:50943402-50943421 Msa0168380:CDS 35.0%
GAACACTACTGAAACATGAA+AGG - chr1_4:50943483-50943502 None:intergenic 35.0%
ATATTTATTCCAGGCTTTCC+TGG + chr1_4:50943632-50943651 Msa0168380:intron 35.0%
CTATAGCAGGAAAAACATTG+CGG - chr1_4:50943696-50943715 None:intergenic 35.0%
! ATCCAATTTTTCTTCTGTGG+AGG - chr1_4:50943973-50943992 None:intergenic 35.0%
!!! TTCGCTTTTTTTCAGGTTCA+GGG - chr1_4:50944115-50944134 None:intergenic 35.0%
! ATTACCTGTTTGGTAGCTAA+GGG - chr1_4:50944293-50944312 None:intergenic 35.0%
! TATTACCTGTTTGGTAGCTA+AGG - chr1_4:50944294-50944313 None:intergenic 35.0%
TTCAATTTAGGCTCTCAAAC+TGG + chr1_4:50944318-50944337 Msa0168380:three_prime_UTR 35.0%
GATGAGATACAGTTTCATCT+AGG - chr1_4:50944347-50944366 None:intergenic 35.0%
CTTGTATGAACTATGGTCTA+TGG + chr1_4:50944396-50944415 Msa0168380:three_prime_UTR 35.0%
AGTTACAATTGTGGACGTTG+TGG + chr1_4:50939824-50939843 Msa0168380:CDS 40.0%
!! AGATGGTGATGGAGATTTGT+TGG + chr1_4:50940087-50940106 Msa0168380:CDS 40.0%
!! TGATGGAGATTTGTTGGATC+TGG + chr1_4:50940093-50940112 Msa0168380:CDS 40.0%
! TCTAGAACCAGATCTAGATG+TGG + chr1_4:50940123-50940142 Msa0168380:CDS 40.0%
TCAATCTCCACATCTAGATC+TGG - chr1_4:50940133-50940152 None:intergenic 40.0%
AATCCAACATGAACCTTCAC+CGG - chr1_4:50940304-50940323 None:intergenic 40.0%
! AGAAATGTCCTGGGATTTTG+AGG + chr1_4:50940341-50940360 Msa0168380:CDS 40.0%
! TTTGAGGCTTTCGCTTAGAA+TGG + chr1_4:50940357-50940376 Msa0168380:CDS 40.0%
!!! TGCTTTTTCATGCCCTAATC+TGG + chr1_4:50940794-50940813 Msa0168380:CDS 40.0%
! ATGCCCTAATCTGGAATCTA+TGG + chr1_4:50940803-50940822 Msa0168380:CDS 40.0%
GTAATACCCATTGATCCGAT+TGG - chr1_4:50940853-50940872 None:intergenic 40.0%
TAACATGGCAATACACCATC+AGG - chr1_4:50941145-50941164 None:intergenic 40.0%
! TGATAATGCAGGGATGAACT+AGG + chr1_4:50941387-50941406 Msa0168380:intron 40.0%
AAACCTCAAAAGCCTCAAGA+TGG + chr1_4:50941431-50941450 Msa0168380:CDS 40.0%
TAGAACAACCTTCCATCTTG+AGG - chr1_4:50941446-50941465 None:intergenic 40.0%
GGAAGGTTGTTCTAATCTAG+GGG + chr1_4:50941452-50941471 Msa0168380:CDS 40.0%
GAAGGTTGTTCTAATCTAGG+GGG + chr1_4:50941453-50941472 Msa0168380:CDS 40.0%
AAAGCCGCATTGAAGCTATA+TGG - chr1_4:50941781-50941800 None:intergenic 40.0%
AGATGGAATTGCAACACATG+TGG - chr1_4:50941899-50941918 None:intergenic 40.0%
TTTATACTGCCTGCCAAATG+CGG + chr1_4:50942064-50942083 Msa0168380:intron 40.0%
TATTTCACAGACACCGCATT+TGG - chr1_4:50942080-50942099 None:intergenic 40.0%
CGAATGCTTTCTCTTGTTCT+TGG + chr1_4:50942399-50942418 Msa0168380:CDS 40.0%
CTCTAGATTTGGATAGCTTG+AGG - chr1_4:50942460-50942479 None:intergenic 40.0%
AGGTCAAGCAACTCTAGATT+TGG - chr1_4:50942471-50942490 None:intergenic 40.0%
AATCTGCTCTCACATGTTTC+AGG + chr1_4:50942868-50942887 Msa0168380:intron 40.0%
CAGTCCATAAGTTCAAGAAG+TGG - chr1_4:50942922-50942941 None:intergenic 40.0%
! CTTCTTGAACTTATGGACTG+TGG + chr1_4:50942922-50942941 Msa0168380:CDS 40.0%
ATTGAAACTCACATCCAAGC+CGG - chr1_4:50943100-50943119 None:intergenic 40.0%
CTCTGGGCAGTTTAAGTATA+GGG - chr1_4:50943203-50943222 None:intergenic 40.0%
GATTCAGATCATTCAGCTCT+GGG - chr1_4:50943219-50943238 None:intergenic 40.0%
AGATTCAGATCATTCAGCTC+TGG - chr1_4:50943220-50943239 None:intergenic 40.0%
!! TTGTCAGGATTTGTTAGTCG+AGG + chr1_4:50943425-50943444 Msa0168380:CDS 40.0%
CTGACTTTGTTACCTGACTT+TGG - chr1_4:50943455-50943474 None:intergenic 40.0%
CAAAGTCAGGTAACAAAGTC+AGG + chr1_4:50943453-50943472 Msa0168380:intron 40.0%
AAATTAGAACCAGGAAAGCC+TGG - chr1_4:50943644-50943663 None:intergenic 40.0%
! CGGGTTCCTTATTTACTTAG+TGG + chr1_4:50943763-50943782 Msa0168380:CDS 40.0%
! TCCTTATTTACTTAGTGGCG+AGG + chr1_4:50943768-50943787 Msa0168380:CDS 40.0%
ACCTCGCCACTAAGTAAATA+AGG - chr1_4:50943772-50943791 None:intergenic 40.0%
TGTGTCTTTACTGTGTGAAC+TGG + chr1_4:50943935-50943954 Msa0168380:intron 40.0%
AGCCTCCACAGAAGAAAAAT+TGG + chr1_4:50943968-50943987 Msa0168380:intron 40.0%
!!! TCGCTTTTTTTCAGGTTCAG+GGG - chr1_4:50944114-50944133 None:intergenic 40.0%
!!! CTTCGCTTTTTTTCAGGTTC+AGG - chr1_4:50944116-50944135 None:intergenic 40.0%
CTGAACCTGAAAAAAAGCGA+AGG + chr1_4:50944114-50944133 Msa0168380:CDS 40.0%
AACCTGAAAAAAAGCGAAGG+AGG + chr1_4:50944117-50944136 Msa0168380:CDS 40.0%
!!! ATCCTCCTTCGCTTTTTTTC+AGG - chr1_4:50944122-50944141 None:intergenic 40.0%
! TTTCTGTATGGTGATGAAGG+TGG + chr1_4:50944200-50944219 Msa0168380:three_prime_UTR 40.0%
! TTCTGTATGGTGATGAAGGT+GGG + chr1_4:50944201-50944220 Msa0168380:three_prime_UTR 40.0%
TTATCCCTTAGCTACCAAAC+AGG + chr1_4:50944286-50944305 Msa0168380:three_prime_UTR 40.0%
TATCGTTTCTGTACCGTCTG+CGG + chr1_4:50939934-50939953 Msa0168380:CDS 45.0%
! AGGCTTGACGATAAAGCGTT+TGG + chr1_4:50940046-50940065 Msa0168380:CDS 45.0%
! GACGATAAAGCGTTTGGTGA+TGG + chr1_4:50940052-50940071 Msa0168380:CDS 45.0%
!! AAAGCGTTTGGTGATGGTGA+TGG + chr1_4:50940058-50940077 Msa0168380:CDS 45.0%
!! TTTGGTGATGGTGATGGAGA+TGG + chr1_4:50940064-50940083 Msa0168380:CDS 45.0%
!! GATGTGGAGATTGATTCGAG+CGG + chr1_4:50940139-50940158 Msa0168380:CDS 45.0%
! ATTTACGGTGGGAGGTTTTG+AGG + chr1_4:50940173-50940192 Msa0168380:CDS 45.0%
GGCTTTCGCTTAGAATGGAA+AGG + chr1_4:50940362-50940381 Msa0168380:CDS 45.0%
TCTTTGACACCGCAACCAAT+CGG + chr1_4:50940835-50940854 Msa0168380:CDS 45.0%
AACTTTGCCTTCATCAGCAG+AGG + chr1_4:50941173-50941192 Msa0168380:intron 45.0%
! CTTCCATCTTGAGGCTTTTG+AGG - chr1_4:50941437-50941456 None:intergenic 45.0%
CTCAAAAGCCTCAAGATGGA+AGG + chr1_4:50941435-50941454 Msa0168380:CDS 45.0%
TCTGCACTCTCTGTCTAAGA+TGG + chr1_4:50941521-50941540 Msa0168380:CDS 45.0%
AGTGAAATCTCTCTCAGCTG+CGG - chr1_4:50941671-50941690 None:intergenic 45.0%
CATAGTTATGAGGTCAGTGC+TGG - chr1_4:50941717-50941736 None:intergenic 45.0%
! CTCTTAGTGCTGCTCAATTG+AGG + chr1_4:50941819-50941838 Msa0168380:CDS 45.0%
TAGAGTTGCTTGACCTCAGT+GGG + chr1_4:50942475-50942494 Msa0168380:CDS 45.0%
GTACAGATTCATACCCACTG+AGG - chr1_4:50942491-50942510 None:intergenic 45.0%
! TCACGCTTCTTTTGTCTCCA+AGG - chr1_4:50942552-50942571 None:intergenic 45.0%
! TGGAGACAAAAGAAGCGTGA+TGG + chr1_4:50942552-50942571 Msa0168380:intron 45.0%
GGTTGCTGTCATAACAGATC+TGG + chr1_4:50942684-50942703 Msa0168380:intron 45.0%
AGATCTGGCATAAGTGACAG+TGG + chr1_4:50942699-50942718 Msa0168380:intron 45.0%
TCACATTAGGGCAAAGAGCA+AGG - chr1_4:50942773-50942792 None:intergenic 45.0%
CCAACCGCTGACGAAAATAA+CGG + chr1_4:50942976-50942995 Msa0168380:CDS 45.0%
! GCTCTGGGCAGTTTAAGTAT+AGG - chr1_4:50943204-50943223 None:intergenic 45.0%
TGTTCATGCAACAGGTTGTC+AGG + chr1_4:50943410-50943429 Msa0168380:CDS 45.0%
GGCGAATGGTTATCTATAGC+AGG - chr1_4:50943709-50943728 None:intergenic 45.0%
GTAGACGTTTAGAAGGCGAA+TGG - chr1_4:50943723-50943742 None:intergenic 45.0%
CCATCAGGTAGACGTTTAGA+AGG - chr1_4:50943730-50943749 None:intergenic 45.0%
CCTTCTAAACGTCTACCTGA+TGG + chr1_4:50943727-50943746 Msa0168380:CDS 45.0%
TCTACCTGATGGCTCCAAAA+GGG + chr1_4:50943738-50943757 Msa0168380:CDS 45.0%
! ATAAGGAACCCGAACCCTTT+TGG - chr1_4:50943755-50943774 None:intergenic 45.0%
ACTTCCGTGTAATGTGCTTG+TGG + chr1_4:50944148-50944167 Msa0168380:CDS 45.0%
CAGTCCACAAGCACATTACA+CGG - chr1_4:50944155-50944174 None:intergenic 45.0%
CGTTGTGGCCTTCCCAAAAA+AGG + chr1_4:50939839-50939858 Msa0168380:CDS 50.0%
TAACGATGAATCTACCGGCG+TGG - chr1_4:50939912-50939931 None:intergenic 50.0%
TTTGACGGTCTTGACGATCG+AGG + chr1_4:50940004-50940023 Msa0168380:CDS 50.0%
! GCAGTGGACTTGATCTGTTG+AGG + chr1_4:50940026-50940045 Msa0168380:CDS 50.0%
!! GATGGTGATGGAGATGGAGA+TGG + chr1_4:50940070-50940089 Msa0168380:CDS 50.0%
GATGGAGATGGAGATGGTGA+TGG + chr1_4:50940076-50940095 Msa0168380:CDS 50.0%
!! GATTGATTCGAGCGGTTTGC+CGG + chr1_4:50940147-50940166 Msa0168380:CDS 50.0%
!! ATTGATTCGAGCGGTTTGCC+GGG + chr1_4:50940148-50940167 Msa0168380:CDS 50.0%
TTTGCCGGGGAATTTACGGT+GGG + chr1_4:50940162-50940181 Msa0168380:CDS 50.0%
! GAAGGTGTGTAAGGGATGGA+GGG + chr1_4:50940228-50940247 Msa0168380:CDS 50.0%
GACGGAGGAGTTGAAGCTTA+GGG + chr1_4:50940276-50940295 Msa0168380:CDS 50.0%
GGAGTTGAAGCTTAGGGTTC+CGG + chr1_4:50940282-50940301 Msa0168380:CDS 50.0%
GTTCCGGTGAAGGTTCATGT+TGG + chr1_4:50940298-50940317 Msa0168380:CDS 50.0%
TCGATGCTGCAGAAATGTCC+TGG + chr1_4:50940331-50940350 Msa0168380:CDS 50.0%
CGATGCTGCAGAAATGTCCT+GGG + chr1_4:50940332-50940351 Msa0168380:CDS 50.0%
AGCGAAAGCCTCAAAATCCC+AGG - chr1_4:50940352-50940371 None:intergenic 50.0%
ACCGCAACCAATCGGATCAA+TGG + chr1_4:50940843-50940862 Msa0168380:CDS 50.0%
! CCCATTGATCCGATTGGTTG+CGG - chr1_4:50940847-50940866 None:intergenic 50.0%
CCGCAACCAATCGGATCAAT+GGG + chr1_4:50940844-50940863 Msa0168380:CDS 50.0%
AGTTGCACCTCTGCTGATGA+AGG - chr1_4:50941183-50941202 None:intergenic 50.0%
! ACACGAAGGCTTTAGCAGCT+AGG - chr1_4:50941279-50941298 None:intergenic 50.0%
! TAAGCTCTAGCTGCACACGA+AGG - chr1_4:50941293-50941312 None:intergenic 50.0%
!!! GGTCAGTGCTGGCATTTTCT+TGG - chr1_4:50941706-50941725 None:intergenic 50.0%
CTAGAGTTGCTTGACCTCAG+TGG + chr1_4:50942474-50942493 Msa0168380:CDS 50.0%
GGCATAAGTGACAGTGGCAT+TGG + chr1_4:50942705-50942724 Msa0168380:CDS 50.0%
CTGCTCTCACATGTTTCAGG+TGG + chr1_4:50942871-50942890 Msa0168380:intron 50.0%
GCGGTTGGATCTGGGAAATT+AGG - chr1_4:50942964-50942983 None:intergenic 50.0%
TTTCGTCAGCGGTTGGATCT+GGG - chr1_4:50942972-50942991 None:intergenic 50.0%
! TTTTCGTCAGCGGTTGGATC+TGG - chr1_4:50942973-50942992 None:intergenic 50.0%
!! CCGTTATTTTCGTCAGCGGT+TGG - chr1_4:50942979-50942998 None:intergenic 50.0%
AGTCGAGGCTATCCAAAGTC+AGG + chr1_4:50943440-50943459 Msa0168380:CDS 50.0%
GTCTACCTGATGGCTCCAAA+AGG + chr1_4:50943737-50943756 Msa0168380:CDS 50.0%
CTGATGGCTCCAAAAGGGTT+CGG + chr1_4:50943743-50943762 Msa0168380:CDS 50.0%
TGATGGCTCCAAAAGGGTTC+GGG + chr1_4:50943744-50943763 Msa0168380:CDS 50.0%
! GTGGTGGTTGTGGTGGAAAC+TGG - chr1_4:50939887-50939906 None:intergenic 55.0%
TTCTGTACCGTCTGCGGTCT+CGG + chr1_4:50939940-50939959 Msa0168380:CDS 55.0%
GTCAACCACCGTCGAATCTC+CGG + chr1_4:50939969-50939988 Msa0168380:CDS 55.0%
! TTGATTCGAGCGGTTTGCCG+GGG + chr1_4:50940149-50940168 Msa0168380:CDS 55.0%
GCGGTTTGCCGGGGAATTTA+CGG + chr1_4:50940158-50940177 Msa0168380:CDS 55.0%
GTTTGCCGGGGAATTTACGG+TGG + chr1_4:50940161-50940180 Msa0168380:CDS 55.0%
ACCTCCCACCGTAAATTCCC+CGG - chr1_4:50940169-50940188 None:intergenic 55.0%
!!! TACGGTGGGAGGTTTTGAGG+AGG + chr1_4:50940176-50940195 Msa0168380:CDS 55.0%
!!! GGTTTTGAGGAGGTTACCGC+CGG + chr1_4:50940186-50940205 Msa0168380:CDS 55.0%
! CGAAGGTGTGTAAGGGATGG+AGG + chr1_4:50940227-50940246 Msa0168380:CDS 55.0%
GTGTAAGGGATGGAGGGAGA+CGG + chr1_4:50940234-50940253 Msa0168380:CDS 55.0%
GAGGAAGCTGTGGAAAGCGA+CGG + chr1_4:50940258-50940277 Msa0168380:CDS 55.0%
CGACGGAGGAGTTGAAGCTT+AGG + chr1_4:50940275-50940294 Msa0168380:CDS 55.0%
GAAGCTTAGGGTTCCGGTGA+AGG + chr1_4:50940288-50940307 Msa0168380:CDS 55.0%
TCACAGACACCGCATTTGGC+AGG - chr1_4:50942076-50942095 None:intergenic 55.0%
CTCAGTTTGTGGGGTTGCAC+CGG + chr1_4:50943078-50943097 Msa0168380:CDS 55.0%
GTTGCTTCAGTGCCCCACTT+TGG + chr1_4:50943383-50943402 Msa0168380:CDS 55.0%
!!! CGAACCCTTTTGGAGCCATC+AGG - chr1_4:50943745-50943764 None:intergenic 55.0%
! GTATGGTGATGAAGGTGGGC+TGG + chr1_4:50944205-50944224 Msa0168380:three_prime_UTR 55.0%
TGAATCTACCGGCGTGGTGG+TGG - chr1_4:50939906-50939925 None:intergenic 60.0%
CGATGAATCTACCGGCGTGG+TGG - chr1_4:50939909-50939928 None:intergenic 60.0%
CGAATCACCGAGACCGCAGA+CGG - chr1_4:50939950-50939969 None:intergenic 60.0%
!! CGTCAAACGAAAGCGCTCGC+CGG - chr1_4:50939991-50940010 None:intergenic 60.0%
CGGCGAGCGCTTTCGTTTGA+CGG + chr1_4:50939989-50940008 Msa0168380:CDS 60.0%
GGTCTTGACGATCGAGGCAG+TGG + chr1_4:50940010-50940029 Msa0168380:CDS 60.0%
TTTGAGGAGGTTACCGCCGG+CGG + chr1_4:50940189-50940208 Msa0168380:CDS 60.0%
ACCGCCGGCGGGATTGTTAT+CGG + chr1_4:50940201-50940220 Msa0168380:CDS 60.0%
GGGATTGTTATCGGCGGCGA+AGG + chr1_4:50940210-50940229 Msa0168380:CDS 60.0%
! ATCGGCGGCGAAGGTGTGTA+AGG + chr1_4:50940219-50940238 Msa0168380:CDS 60.0%
! TCGGCGGCGAAGGTGTGTAA+GGG + chr1_4:50940220-50940239 Msa0168380:CDS 60.0%
! CGGCGAAGGTGTGTAAGGGA+TGG + chr1_4:50940224-50940243 Msa0168380:CDS 60.0%
GAAGCTGTGGAAAGCGACGG+AGG + chr1_4:50940261-50940280 Msa0168380:CDS 60.0%
!! TTTGTGGGGTTGCACCGGCT+TGG + chr1_4:50943083-50943102 Msa0168380:CDS 60.0%
!! CGTGGTGGTGGTGGTTGTGG+TGG - chr1_4:50939894-50939913 None:intergenic 65.0%
CACAACCACCACCACCACGC+CGG + chr1_4:50939895-50939914 Msa0168380:CDS 65.0%
!! ATCTACCGGCGTGGTGGTGG+TGG - chr1_4:50939903-50939922 None:intergenic 65.0%
AGCGCTCGCCGGAGATTCGA+CGG - chr1_4:50939980-50939999 None:intergenic 65.0%
GCCGGGGAATTTACGGTGGG+AGG + chr1_4:50940165-50940184 Msa0168380:CDS 65.0%
TTGAGGAGGTTACCGCCGGC+GGG + chr1_4:50940190-50940209 Msa0168380:CDS 65.0%
GCCGATAACAATCCCGCCGG+CGG - chr1_4:50940205-50940224 None:intergenic 65.0%
GCCGGCGGGATTGTTATCGG+CGG + chr1_4:50940204-50940223 Msa0168380:CDS 65.0%
GCCGCCGATAACAATCCCGC+CGG - chr1_4:50940208-50940227 None:intergenic 65.0%
GCGCGAAGATTGCGACGCGG+CGG - chr1_4:50939753-50939772 None:intergenic 70.0%
GCCGCGTCGCAATCTTCGCG+CGG + chr1_4:50939752-50939771 Msa0168380:CDS 70.0%
GCCGCGCGAAGATTGCGACG+CGG - chr1_4:50939756-50939775 None:intergenic 70.0%
GCGTCGCAATCTTCGCGCGG+CGG + chr1_4:50939755-50939774 Msa0168380:CDS 70.0%
!! CGGCGTGGTGGTGGTGGTTG+TGG - chr1_4:50939897-50939916 None:intergenic 70.0%
GCTCGCCGGAGATTCGACGG+TGG - chr1_4:50939977-50939996 None:intergenic 70.0%
AGGGATGGAGGGAGACGGCG+AGG + chr1_4:50940239-50940258 Msa0168380:CDS 70.0%
GGGAGACGGCGAGGAAGCTG+TGG + chr1_4:50940248-50940267 Msa0168380:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50939731 50944460 50939731 ID=Msa0168380;Name=Msa0168380
chr1_4 mRNA 50939731 50944460 50939731 ID=Msa0168380-mRNA-1;Parent=Msa0168380;Name=Msa0168380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.90|1|1|1|11|285|607
chr1_4 exon 50939731 50940383 50939731 ID=Msa0168380-mRNA-1:exon:14965;Parent=Msa0168380-mRNA-1
chr1_4 exon 50940764 50940865 50940764 ID=Msa0168380-mRNA-1:exon:14966;Parent=Msa0168380-mRNA-1
chr1_4 exon 50941398 50941542 50941398 ID=Msa0168380-mRNA-1:exon:14967;Parent=Msa0168380-mRNA-1
chr1_4 exon 50941656 50941840 50941656 ID=Msa0168380-mRNA-1:exon:14968;Parent=Msa0168380-mRNA-1
chr1_4 exon 50942392 50942496 50942392 ID=Msa0168380-mRNA-1:exon:14969;Parent=Msa0168380-mRNA-1
chr1_4 exon 50942701 50942798 50942701 ID=Msa0168380-mRNA-1:exon:14970;Parent=Msa0168380-mRNA-1
chr1_4 exon 50942890 50943107 50942890 ID=Msa0168380-mRNA-1:exon:14971;Parent=Msa0168380-mRNA-1
chr1_4 exon 50943199 50943265 50943199 ID=Msa0168380-mRNA-1:exon:14972;Parent=Msa0168380-mRNA-1
chr1_4 exon 50943376 50943461 50943376 ID=Msa0168380-mRNA-1:exon:14973;Parent=Msa0168380-mRNA-1
chr1_4 exon 50943691 50943789 50943691 ID=Msa0168380-mRNA-1:exon:14974;Parent=Msa0168380-mRNA-1
chr1_4 exon 50944110 50944460 50944110 ID=Msa0168380-mRNA-1:exon:14975;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50939731 50940383 50939731 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50940764 50940865 50940764 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50941398 50941542 50941398 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50941656 50941840 50941656 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50942392 50942496 50942392 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50942701 50942798 50942701 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50942890 50943107 50942890 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50943199 50943265 50943199 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50943376 50943461 50943376 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50943691 50943789 50943691 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 CDS 50944110 50944175 50944110 ID=Msa0168380-mRNA-1:cds;Parent=Msa0168380-mRNA-1
chr1_4 three_prime_UTR 50944176 50944460 50944176 ID=Msa0168380-mRNA-1:three_prime_utr;Parent=Msa0168380-mRNA-1
Gene Sequence

>Msa0168380

ATGCAACACTCAATTAACGCCGCCGCGTCGCAATCTTCGCGCGGCGGCGACACCGCTGAAAGTTCCGATACAAAAAAAGGAAAGAAACGTGGTAGTTACAATTGTGGACGTTGTGGCCTTCCCAAAAAAGGACATAACTGTAATATCAAAACGCCAGTTTCCACCACAACCACCACCACCACGCCGGTAGATTCATCGTTATCTATCGTTTCTGTACCGTCTGCGGTCTCGGTGATTCGTCAACCACCGTCGAATCTCCGGCGAGCGCTTTCGTTTGACGGTCTTGACGATCGAGGCAGTGGACTTGATCTGTTGAGGCTTGACGATAAAGCGTTTGGTGATGGTGATGGAGATGGAGATGGTGATGGAGATTTGTTGGATCTGGAACTAGATCTAGAACCAGATCTAGATGTGGAGATTGATTCGAGCGGTTTGCCGGGGAATTTACGGTGGGAGGTTTTGAGGAGGTTACCGCCGGCGGGATTGTTATCGGCGGCGAAGGTGTGTAAGGGATGGAGGGAGACGGCGAGGAAGCTGTGGAAAGCGACGGAGGAGTTGAAGCTTAGGGTTCCGGTGAAGGTTCATGTTGGATTTGTTGCGTCGATGCTGCAGAAATGTCCTGGGATTTTGAGGCTTTCGCTTAGAATGGAAAGTGATTTTGATTCAACGATGCTGGCTTGCATTGCTTTTTCATGCCCTAATCTGGAATCTATGGAGATCTCAGTCTTTGACACCGCAACCAATCGGATCAATGGGGATGAACTAGGCCGATTTGTTGCTGACAAAAGAAACCTCAAAAGCCTCAAGATGGAAGGTTGTTCTAATCTAGGGGGTTTTGTCCTCTCTTCATCTAGTTTGTCTACACTTTGGCTATCTGATCTGCACTCTCTGTCTAAGATGGTATTTAACTGTCCGCAGCTGAGAGAGATTTCACTTGAATTTTCTTGCCAAGAAAATGCCAGCACTGACCTCATAACTATGATTGAAGGATTGGGAAGAAGTTGCTTGAAATTACAAAACATCCATATAGCTTCAATGCGGCTTTCTCATGCTGCTGTGCTTGCTCTTAGTGCTGCTCAATTGAGGGGGCTGCGAATGCTTTCTCTTGTTCTTGGATCTGAATTAACTGATGCATCTGTTGCTGCAATTGCCTCAAGCTATCCAAATCTAGAGTTGCTTGACCTCAGTGGATCTGGCATAAGTGACAGTGGCATTGGAATGATTTGCAACGTATTCCCTGAAACACTTAAAAGACTTCTCCTTGCTCTTTGCCCTAATGTGACCTCAAGTGGCATTCAATTTGCTACAGCTCAATTGCCACTTCTTGAACTTATGGACTGTGGCATGACCATATGTGATCCTAATTTCCCAGATCCAACCGCTGACGAAAATAACGGAAAATCACAGAAAACATCCAGTGCAAATCTACAGCATATAAACCAAAAGCTAATCATCAAGCATAGCCGTTTAAAGAAACTCAGTTTGTGGGGTTGCACCGGCTTGGATGCCCTATACTTAAACTGCCCAGAGCTGAATGATCTGAATCTAAATTCTTGTAGAAATCTGCATTCAGAGAGGCTGTTGCTTCAGTGCCCCACTTTGGAAAATGTTCATGCAACAGGTTGTCAGGATTTGTTAGTCGAGGCTATCCAAAGTCAGGTCCGCAATGTTTTTCCTGCTATAGATAACCATTCGCCTTCTAAACGTCTACCTGATGGCTCCAAAAGGGTTCGGGTTCCTTATTTACTTAGTGGCGAGTCCCCTGAACCTGAAAAAAAGCGAAGGAGGATCGAGAGACTTCCGTGTAATGTGCTTGTGGACTGA

Protein sequence

>Msa0168380

MQHSINAAASQSSRGGDTAESSDTKKGKKRGSYNCGRCGLPKKGHNCNIKTPVSTTTTTTTPVDSSLSIVSVPSAVSVIRQPPSNLRRALSFDGLDDRGSGLDLLRLDDKAFGDGDGDGDGDGDLLDLELDLEPDLDVEIDSSGLPGNLRWEVLRRLPPAGLLSAAKVCKGWRETARKLWKATEELKLRVPVKVHVGFVASMLQKCPGILRLSLRMESDFDSTMLACIAFSCPNLESMEISVFDTATNRINGDELGRFVADKRNLKSLKMEGCSNLGGFVLSSSSLSTLWLSDLHSLSKMVFNCPQLREISLEFSCQENASTDLITMIEGLGRSCLKLQNIHIASMRLSHAAVLALSAAQLRGLRMLSLVLGSELTDASVAAIASSYPNLELLDLSGSGISDSGIGMICNVFPETLKRLLLALCPNVTSSGIQFATAQLPLLELMDCGMTICDPNFPDPTADENNGKSQKTSSANLQHINQKLIIKHSRLKKLSLWGCTGLDALYLNCPELNDLNLNSCRNLHSERLLLQCPTLENVHATGCQDLLVEAIQSQVRNVFPAIDNHSPSKRLPDGSKRVRVPYLLSGESPEPEKKRRRIERLPCNVLVD*