AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070430 MtrunA17_Chr1g0175701 98.256 344 6 0 1 344 1 344 0.0 682
Msa0070430 MtrunA17_Chr7g0258891 70.141 355 94 3 1 344 1 354 3.15e-177 495
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070430 AT3G12050.1 68.144 361 97 3 1 344 1 360 5.31e-176 493
Msa0070430 AT3G12050.2 61.219 361 83 4 1 344 1 321 9.49e-149 422

Find 114 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGCTGCTACTTATTTC+TGG 0.128699 1_2:-40960690 Msa0070430:three_prime_UTR
CTGATGAAGATCCTGAAATT+AGG 0.214851 1_2:-40962760 Msa0070430:CDS
ATTCGATCTGTGTTTGGTTT+TGG 0.228632 1_2:-40960837 Msa0070430:CDS
GAAAGGGAAAGGGTTGATTT+TGG 0.239317 1_2:-40962681 Msa0070430:CDS
TTTGGAGAAGGTTAGGGTTT+GGG 0.255145 1_2:-40962663 Msa0070430:CDS
GCCGTATTTCGCCATGAAAT+TGG 0.280120 1_2:+40963129 None:intergenic
GTCTGTTACAGGGACGAATT+TGG 0.286496 1_2:-40962354 Msa0070430:CDS
TTGAGTTTGGTGTGTTATAT+AGG 0.294602 1_2:+40963243 None:intergenic
TTAACACTAACCCTAATTTC+AGG 0.309839 1_2:+40962749 None:intergenic
TTCCCTTTCTCCTTCGCAAC+CGG 0.342546 1_2:+40962533 None:intergenic
ACCAATTTCATGGCGAAATA+CGG 0.345826 1_2:-40963130 Msa0070430:exon
CAGAGGATTCGATCTGTGTT+TGG 0.353659 1_2:-40960843 Msa0070430:CDS
TCGCTACCAAACCAATTTCA+TGG 0.363596 1_2:-40963140 Msa0070430:exon
ATTGTTCAGAGATGGAGATT+TGG 0.368974 1_2:-40962311 Msa0070430:CDS
GATGATGATAATGTTGGGTT+TGG 0.379230 1_2:+40963211 None:intergenic
TTGTGGACGTTTGTTCCGTC+TGG 0.386272 1_2:+40963073 None:intergenic
TTTAGACCATTCTAAACAAT+TGG 0.390977 1_2:+40963033 None:intergenic
GTGTTTGAGGAGCCTGAATC+TGG 0.392808 1_2:-40961055 Msa0070430:CDS
CCATTCTAAACAATTGGTTT+CGG 0.396900 1_2:+40963039 None:intergenic
ACGAATTTGGAGTTGGAAGA+AGG 0.406217 1_2:-40962341 Msa0070430:CDS
TGAATGAGAAGTTTAATTGT+AGG 0.410407 1_2:-40962487 Msa0070430:CDS
TAATGATGGATGAGAATAGA+TGG 0.417162 1_2:-40962445 Msa0070430:CDS
GCATTCTCATCAGAGATATA+CGG 0.417274 1_2:+40962782 None:intergenic
AGGGTTAGTGTTAAAGAAGA+AGG 0.422944 1_2:-40962740 Msa0070430:CDS
GACATTAACGTAGGCTTCAC+CGG 0.423152 1_2:+40962919 None:intergenic
GGAAGTTGATTGTTCAGAGA+TGG 0.424875 1_2:-40962319 Msa0070430:CDS
AAAGGAGGAGGAAGTTGTTC+CGG 0.425406 1_2:-40962552 Msa0070430:CDS
TTGGGATTGAGATTTGAGTT+TGG 0.429074 1_2:+40963230 None:intergenic
CTCTCAAGATCATCCTTAAC+CGG 0.431014 1_2:+40962617 None:intergenic
CTAGGATTAGTAAAGAGGTT+GGG 0.438628 1_2:-40962400 Msa0070430:CDS
AGAGATGGAGATTTGGAAGT+TGG 0.439510 1_2:-40962304 Msa0070430:CDS
TGATGAAGATCCTGAAATTA+GGG 0.441615 1_2:-40962759 Msa0070430:CDS
GTTCCGGTTGCGAAGGAGAA+AGG 0.444491 1_2:-40962536 Msa0070430:CDS
ACGGAACAAACGTCCACAAC+TGG 0.451199 1_2:-40963069 Msa0070430:CDS
CCGAAACCAATTGTTTAGAA+TGG 0.453161 1_2:-40963039 Msa0070430:CDS
GGTTGCGGTGGAGAAGAAAA+AGG 0.455227 1_2:-40962570 Msa0070430:CDS
GCGAAGGAGAAAGGGAAGAA+GGG 0.456206 1_2:-40962527 Msa0070430:CDS
AAATCAGCGTTAACCTTACC+TGG 0.457043 1_2:-40962868 Msa0070430:CDS
GCTAGGATTAGTAAAGAGGT+TGG 0.463455 1_2:-40962401 Msa0070430:CDS
ATGATGATAATGTTGGGTTT+GGG 0.464707 1_2:+40963212 None:intergenic
GGGTTGAGAGTATGTCGAAA+GGG 0.464757 1_2:-40962643 Msa0070430:CDS
GCCTGATGGAATGCAATCTA+TGG 0.466346 1_2:-40962282 Msa0070430:intron
TTATATAGGAATGTGGTGTT+TGG 0.466458 1_2:+40963257 None:intergenic
TTAGATCATTGGATTGGCAT+TGG 0.471526 1_2:-40960752 Msa0070430:three_prime_UTR
CTATGGTTAGATCATTGGAT+TGG 0.472079 1_2:-40960758 Msa0070430:three_prime_UTR
GTTACAATTATCCGTATCCT+TGG 0.477860 1_2:-40960574 Msa0070430:three_prime_UTR
GGTGAAGAGATTGTTGAAGA+AGG 0.479610 1_2:+40963009 None:intergenic
ACAATTGGTGTGGTTGTTTG+AGG 0.480558 1_2:+40963180 None:intergenic
AATTACGATGATGATAATGT+TGG 0.481793 1_2:+40963205 None:intergenic
ATTTCGCCATGAAATTGGTT+TGG 0.482244 1_2:+40963134 None:intergenic
TAATGCTAGGATTAGTAAAG+AGG 0.482426 1_2:-40962405 Msa0070430:CDS
AACTGTCTTGTTTATTACCA+TGG 0.482611 1_2:-40960660 Msa0070430:three_prime_UTR
GGATGATCTTGAGAGTAAGA+AGG 0.484093 1_2:-40962609 Msa0070430:CDS
CGAATTTGGAGTTGGAAGAA+GGG 0.486824 1_2:-40962340 Msa0070430:CDS
GTGATGAATTTGAAAGGGAA+AGG 0.487842 1_2:-40962692 Msa0070430:CDS
ACCATAGATTGCATTCCATC+AGG 0.497848 1_2:+40962281 None:intergenic
CTGATGTGCCTGAGGAAGAC+AGG 0.498106 1_2:-40961006 Msa0070430:intron
GGATTTGTTTGAGATAATGA+TGG 0.499387 1_2:-40962459 Msa0070430:CDS
TGCGAAGGAGAAAGGGAAGA+AGG 0.505596 1_2:-40962528 Msa0070430:CDS
GAATGAGAAGTTTAATTGTA+GGG 0.508190 1_2:-40962486 Msa0070430:CDS
TAGGATTAGTAAAGAGGTTG+GGG 0.512998 1_2:-40962399 Msa0070430:CDS
GTAGGTGAGAATTGTGTTTG+AGG 0.517328 1_2:-40961068 Msa0070430:intron
TAATTCTGTCACCAAGGATA+CGG 0.518113 1_2:+40960563 None:intergenic
GTGATTCACCTTCCCAGGTA+AGG 0.520529 1_2:+40962855 None:intergenic
ATTACGATGATGATAATGTT+GGG 0.529571 1_2:+40963206 None:intergenic
TCCACCGCAACCGAATTCTT+CGG 0.534007 1_2:+40962581 None:intergenic
TTCCGGTTGCGAAGGAGAAA+GGG 0.534459 1_2:-40962535 Msa0070430:CDS
CAAACGTCCACAACTGGCAC+TGG 0.540509 1_2:-40963063 Msa0070430:CDS
ACAACCGTAACTCCAGATTC+AGG 0.541200 1_2:+40961043 None:intergenic
TACAGGGACGAATTTGGAGT+TGG 0.543461 1_2:-40962348 Msa0070430:CDS
AGGGATGTGATGAATTTGAA+AGG 0.544348 1_2:-40962698 Msa0070430:CDS
TTTGCCGAAGAATTCGGTTG+CGG 0.548653 1_2:-40962585 Msa0070430:CDS
CGAAGGAGAAAGGGAAGAAG+GGG 0.550986 1_2:-40962526 Msa0070430:CDS
ACACTTAACCTGTCTTCCTC+AGG 0.551210 1_2:+40960998 None:intergenic
GAAGTTTAATTGTAGGGCGA+AGG 0.551225 1_2:-40962480 Msa0070430:CDS
GTCACGTGATTCACCTTCCC+AGG 0.556675 1_2:+40962850 None:intergenic
CAAACACAGATCGAATCCTC+TGG 0.557147 1_2:+40960844 None:intergenic
TTTCGGACCAGTGCCAGTTG+TGG 0.558239 1_2:+40963056 None:intergenic
GTGAAGCCTACGTTAATGTC+CGG 0.558433 1_2:-40962916 Msa0070430:CDS
GGAAGTTGTTCCGGTTGCGA+AGG 0.564068 1_2:-40962543 Msa0070430:CDS
GGAGCCTGAATCTGGAGTTA+CGG 0.567314 1_2:-40961047 Msa0070430:CDS
CGGAAAGGTAAAATCATCCC+TGG 0.569320 1_2:-40962896 Msa0070430:CDS
AGCGTTAACCTTACCTGGGA+AGG 0.576402 1_2:-40962863 Msa0070430:CDS
TGATGAATTTGAAAGGGAAA+GGG 0.578004 1_2:-40962691 Msa0070430:CDS
ATGGATGAGAATAGATGGAA+GGG 0.581087 1_2:-40962440 Msa0070430:CDS
GCCGAAGAATTCGGTTGCGG+TGG 0.581339 1_2:-40962582 Msa0070430:CDS
GATGGATGAGAATAGATGGA+AGG 0.585625 1_2:-40962441 Msa0070430:CDS
GGTGAATCACGTGACTCAGA+AGG 0.595637 1_2:-40962842 Msa0070430:CDS
TTAACGCTGATTTCGTAACC+AGG 0.597149 1_2:+40962878 None:intergenic
AGATTTGGAAGTTGGCCTGA+TGG 0.599447 1_2:-40962296 Msa0070430:CDS
GGGATGTGATGAATTTGAAA+GGG 0.599850 1_2:-40962697 Msa0070430:CDS
GGTTGAGAGTATGTCGAAAG+GGG 0.605732 1_2:-40962642 Msa0070430:CDS
TGGGTTGAGAGTATGTCGAA+AGG 0.608155 1_2:-40962644 Msa0070430:CDS
ATTTGGGAATGCGACTGTTG+TGG 0.614623 1_2:-40960901 Msa0070430:CDS
ATCACGTGACTCAGAAGGAA+AGG 0.617515 1_2:-40962837 Msa0070430:CDS
TGGTGTGTTATATAGGAATG+TGG 0.620536 1_2:+40963250 None:intergenic
AAATAGACATACAACGAGCA+AGG 0.627603 1_2:+40960632 None:intergenic
GCCTACGTTAATGTCCGGAA+AGG 0.637636 1_2:-40962911 Msa0070430:CDS
TTCATGGCGAAATACGGCGA+AGG 0.644564 1_2:-40963124 Msa0070430:CDS
CAACGAGCAAGGATCATCCA+TGG 0.647351 1_2:+40960643 None:intergenic
AACACACACTGATGTGCCTG+AGG 0.650288 1_2:-40961014 Msa0070430:CDS
ATCGTAGAAGACAGACCAGA+CGG 0.651665 1_2:-40963088 Msa0070430:CDS
TGTTGTGGAGAATACAGAGA+GGG 0.654870 1_2:-40960886 Msa0070430:CDS
ACAAGTTAATTCTGTCACCA+AGG 0.668216 1_2:+40960557 None:intergenic
TAACGCTGATTTCGTAACCA+GGG 0.673358 1_2:+40962879 None:intergenic
ACCTTTCCGGACATTAACGT+AGG 0.681682 1_2:+40962910 None:intergenic
AATCAGCGTTAACCTTACCT+GGG 0.690159 1_2:-40962867 Msa0070430:CDS
GGAGGGATCTCATATTCCAG+AGG 0.690910 1_2:-40960860 Msa0070430:CDS
ACGGCGAAGGAGACAAACGT+TGG 0.691467 1_2:-40963111 Msa0070430:CDS
TTGTGGAGAATACAGAGAGG+GGG 0.708289 1_2:-40960884 Msa0070430:CDS
GTTGAGAGTATGTCGAAAGG+GGG 0.711562 1_2:-40962641 Msa0070430:CDS
CTGTTGTGGAGAATACAGAG+AGG 0.720812 1_2:-40960887 Msa0070430:CDS
GTTGTGGAGAATACAGAGAG+GGG 0.741456 1_2:-40960885 Msa0070430:CDS
AGGATTAGTAAAGAGGTTGG+GGG 0.750169 1_2:-40962398 Msa0070430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTTTTAGATTTTAAAATA+CGG + chr1_2:40961881-40961900 None:intergenic 10.0%
!!! ATTTTAAAATCTAAAAGTTT+TGG - chr1_2:40961882-40961901 Msa0070430:intron 10.0%
!!! ATTGTTAAATTTTAAAATAG+AGG - chr1_2:40962140-40962159 Msa0070430:intron 10.0%
!!! AACTGTTAAATTTTAAAATA+AGG - chr1_2:40962168-40962187 Msa0070430:intron 10.0%
!!! ACTGTTAAATTTTAAAATAA+GGG - chr1_2:40962169-40962188 Msa0070430:intron 10.0%
!!! TACTAATTTTTATAATAGTT+TGG - chr1_2:40962253-40962272 Msa0070430:intron 10.0%
!!! CAAATTAAGGTTTTTATAAT+TGG - chr1_2:40961459-40961478 Msa0070430:intron 15.0%
!!! ATTTTAAAATTTGACAGTTT+GGG + chr1_2:40962070-40962089 None:intergenic 15.0%
!!! AATTTTAAAATTTGACAGTT+TGG + chr1_2:40962071-40962090 None:intergenic 15.0%
!!! AAACTGTCAAATTTTAAAAT+TGG - chr1_2:40962070-40962089 Msa0070430:intron 15.0%
!!! AACTGTCAAATTTTAAAATT+GGG - chr1_2:40962071-40962090 Msa0070430:intron 15.0%
!! TTAGATCAAATATTTGATAA+AGG - chr1_2:40962110-40962129 Msa0070430:intron 15.0%
!! TAGATCAAATATTTGATAAA+GGG - chr1_2:40962111-40962130 Msa0070430:intron 15.0%
!!! CTGTTAAATTTTAAAATAAG+GGG - chr1_2:40962170-40962189 Msa0070430:intron 15.0%
!!! ATTTTTGTTTTCTTTTTCTA+TGG - chr1_2:40962914-40962933 Msa0070430:CDS 15.0%
!!! CTTTATAAAGTTTTTATGAA+TGG - chr1_2:40963207-40963226 Msa0070430:five_prime_UTR 15.0%
!!! TTTTAGGAAACAAAAACAAT+TGG + chr1_2:40960527-40960546 None:intergenic 20.0%
!!! TTTGTTTCTGTTTCAAATTA+AGG - chr1_2:40961446-40961465 Msa0070430:intron 20.0%
!!! TTAAGGTTTTTATAATTGGA+AGG - chr1_2:40961463-40961482 Msa0070430:intron 20.0%
!!! AATTGGAAGGTTTTAAATTA+CGG - chr1_2:40961476-40961495 Msa0070430:intron 20.0%
!!! TTAAGGTTTTAAATCATAGT+TGG - chr1_2:40961592-40961611 Msa0070430:intron 20.0%
!!! CTTATTTCTATAAACTCTTT+AGG - chr1_2:40961776-40961795 Msa0070430:intron 20.0%
!! ATAGCTTATCAAAGTAATTT+AGG - chr1_2:40961803-40961822 Msa0070430:intron 20.0%
!! TCTGCAAAATAATGAAAATA+GGG + chr1_2:40961850-40961869 None:intergenic 20.0%
!! ATCTGCAAAATAATGAAAAT+AGG + chr1_2:40961851-40961870 None:intergenic 20.0%
!!! TTTTCATTATTTTGCAGATT+TGG - chr1_2:40961852-40961871 Msa0070430:intron 20.0%
!!! CCAATTTTTAGTTCAAAAAT+AGG + chr1_2:40961916-40961935 None:intergenic 20.0%
!!! CCTATTTTTGAACTAAAAAT+TGG - chr1_2:40961913-40961932 Msa0070430:intron 20.0%
!!! GTTTTAAACGATGTTTTTAA+GGG + chr1_2:40962019-40962038 None:intergenic 20.0%
!!! TGTTTTAAACGATGTTTTTA+AGG + chr1_2:40962020-40962039 None:intergenic 20.0%
!!! ACTGTCAAATTTTAAAATTG+GGG - chr1_2:40962072-40962091 Msa0070430:intron 20.0%
!!! TTTGATCTAAAATGCATAAT+TGG + chr1_2:40962100-40962119 None:intergenic 20.0%
!!! TTTTCATCATTTTGCATAAT+TGG + chr1_2:40962197-40962216 None:intergenic 20.0%
!! TTATGCAAAATGATGAAAAT+AGG - chr1_2:40962198-40962217 Msa0070430:intron 20.0%
!! TATGCAAAATGATGAAAATA+GGG - chr1_2:40962199-40962218 Msa0070430:intron 20.0%
!! TAATTAAGAGCTTATATCAT+TGG + chr1_2:40962294-40962313 None:intergenic 20.0%
!! AATGATATAAGCTCTTAATT+AGG - chr1_2:40962293-40962312 Msa0070430:CDS 20.0%
!!! AAATCAGTGTTTAACTTTTT+CGG - chr1_2:40962380-40962399 Msa0070430:CDS 20.0%
!!! TTTGAATATTTGTTTCTGAA+TGG - chr1_2:40962587-40962606 Msa0070430:CDS 20.0%
!!! TTTGATAGATAATTTTGTGT+TGG - chr1_2:40962728-40962747 Msa0070430:CDS 20.0%
!! CATAAAAACTTTATAAAGAC+AGG + chr1_2:40963205-40963224 None:intergenic 20.0%
!! ATTACGATGATGATAATGTT+GGG + chr1_2:40960486-40960505 None:intergenic 25.0%
!! AATTACGATGATGATAATGT+TGG + chr1_2:40960487-40960506 None:intergenic 25.0%
! TTTAGACCATTCTAAACAAT+TGG + chr1_2:40960659-40960678 None:intergenic 25.0%
!! TGATTTGAAGATTATTTTCG+TGG + chr1_2:40960726-40960745 None:intergenic 25.0%
! AAAAATTGCGAATAGTTTGA+GGG - chr1_2:40960972-40960991 Msa0070430:intron 25.0%
! TGAATGAGAAGTTTAATTGT+AGG - chr1_2:40961202-40961221 Msa0070430:intron 25.0%
! GAATGAGAAGTTTAATTGTA+GGG - chr1_2:40961203-40961222 Msa0070430:intron 25.0%
!!! GTGAGTTTAGTATTTTTGAT+GGG - chr1_2:40961313-40961332 Msa0070430:intron 25.0%
!!! ATTGGAAGGTTTTAAATTAC+GGG - chr1_2:40961477-40961496 Msa0070430:intron 25.0%
! AGTTGTGACATGTTAATAAT+TGG - chr1_2:40961746-40961765 Msa0070430:intron 25.0%
!! TTTCTATAAACTCTTTAGGA+TGG - chr1_2:40961780-40961799 Msa0070430:intron 25.0%
! TGCAAAATAATGAAAATAGG+GGG + chr1_2:40961848-40961867 None:intergenic 25.0%
! CTGCAAAATAATGAAAATAG+GGG + chr1_2:40961849-40961868 None:intergenic 25.0%
!! TTTGGGTTTGATCTAAAATA+TGG + chr1_2:40962053-40962072 None:intergenic 25.0%
! ATGCAAAATGATGAAAATAG+GGG - chr1_2:40962200-40962219 Msa0070430:intron 25.0%
!! AATTAGGTTGTATATCCAAA+CGG - chr1_2:40962309-40962328 Msa0070430:CDS 25.0%
! GAATTCTAAATTACCTAATG+CGG + chr1_2:40962471-40962490 None:intergenic 25.0%
!! CATTAGGTAATTTAGAATTC+TGG - chr1_2:40962471-40962490 Msa0070430:CDS 25.0%
!! GGTTAAGTGTTTGATTATTT+TGG - chr1_2:40962704-40962723 Msa0070430:CDS 25.0%
!! ATTGATTTCAAATGCAGATT+TGG - chr1_2:40962771-40962790 Msa0070430:CDS 25.0%
! TTGATTTCAAATGCAGATTT+GGG - chr1_2:40962772-40962791 Msa0070430:CDS 25.0%
!! TTTTTCTATGGTTAGATCAT+TGG - chr1_2:40962926-40962945 Msa0070430:CDS 25.0%
!!! ATGAATGGATTTTCAGATTA+TGG - chr1_2:40963222-40963241 Msa0070430:five_prime_UTR 25.0%
!!! CAGATTATGGATATTTTTAC+AGG - chr1_2:40963235-40963254 Msa0070430:five_prime_UTR 25.0%
TTATATAGGAATGTGGTGTT+TGG + chr1_2:40960435-40960454 None:intergenic 30.0%
!! TTGAGTTTGGTGTGTTATAT+AGG + chr1_2:40960449-40960468 None:intergenic 30.0%
! ATGATGATAATGTTGGGTTT+GGG + chr1_2:40960480-40960499 None:intergenic 30.0%
! CCATTCTAAACAATTGGTTT+CGG + chr1_2:40960653-40960672 None:intergenic 30.0%
AAAAAAGTCGAAAAGCTTTC+CGG - chr1_2:40960751-40960770 Msa0070430:three_prime_UTR 30.0%
TGATGAAGATCCTGAAATTA+GGG - chr1_2:40960930-40960949 Msa0070430:intron 30.0%
TTAACACTAACCCTAATTTC+AGG + chr1_2:40960943-40960962 None:intergenic 30.0%
GAAAAATTGCGAATAGTTTG+AGG - chr1_2:40960971-40960990 Msa0070430:intron 30.0%
TGATGAATTTGAAAGGGAAA+GGG - chr1_2:40960998-40961017 Msa0070430:intron 30.0%
! GGATTTGTTTGAGATAATGA+TGG - chr1_2:40961230-40961249 Msa0070430:intron 30.0%
!! TAATGATGGATGAGAATAGA+TGG - chr1_2:40961244-40961263 Msa0070430:intron 30.0%
! TAATGCTAGGATTAGTAAAG+AGG - chr1_2:40961284-40961303 Msa0070430:intron 30.0%
!! GGTGAGTTTAGTATTTTTGA+TGG - chr1_2:40961312-40961331 Msa0070430:intron 30.0%
! GATTGACTTATTCGAGTTTA+TGG - chr1_2:40961527-40961546 Msa0070430:intron 30.0%
!!! AGTTTGTGTTTTAGCCTTTT+AGG - chr1_2:40961654-40961673 Msa0070430:intron 30.0%
!! AACTATTTTACTAGTTCTCC+CGG + chr1_2:40961730-40961749 None:intergenic 30.0%
TGTGATTTATGATATGACGA+TGG - chr1_2:40961958-40961977 Msa0070430:intron 30.0%
! TATGGGCTTAATTGCAATTT+TGG + chr1_2:40962228-40962247 None:intergenic 30.0%
TGTAATATTGCGGATATTTG+TGG - chr1_2:40962335-40962354 Msa0070430:CDS 30.0%
CGGATATTTGTGGTTAAATA+CGG - chr1_2:40962345-40962364 Msa0070430:CDS 30.0%
AGCTTCAATTGCAATTGTAT+TGG + chr1_2:40962411-40962430 None:intergenic 30.0%
!! AACTGTCTTGTTTATTACCA+TGG - chr1_2:40963029-40963048 Msa0070430:CDS 30.0%
TGGTGTGTTATATAGGAATG+TGG + chr1_2:40960442-40960461 None:intergenic 35.0%
! TTGGGATTGAGATTTGAGTT+TGG + chr1_2:40960462-40960481 None:intergenic 35.0%
! GATGATGATAATGTTGGGTT+TGG + chr1_2:40960481-40960500 None:intergenic 35.0%
GGAAACAAAAACAATTGGTG+TGG + chr1_2:40960522-40960541 None:intergenic 35.0%
!!! TGGTTTGGTAGCGAATTTTT+AGG + chr1_2:40960543-40960562 None:intergenic 35.0%
ATTTCGCCATGAAATTGGTT+TGG + chr1_2:40960558-40960577 None:intergenic 35.0%
ACCAATTTCATGGCGAAATA+CGG - chr1_2:40960559-40960578 Msa0070430:three_prime_UTR 35.0%
CCGAAACCAATTGTTTAGAA+TGG - chr1_2:40960650-40960669 Msa0070430:three_prime_UTR 35.0%
!!! GTCATCGATGATTTTGAGAT+TGG + chr1_2:40960704-40960723 None:intergenic 35.0%
! AAAGGTTTTGCAGAAGGTTA+AGG - chr1_2:40960870-40960889 Msa0070430:CDS 35.0%
! AAGGTTTTGCAGAAGGTTAA+GGG - chr1_2:40960871-40960890 Msa0070430:CDS 35.0%
GCATTCTCATCAGAGATATA+CGG + chr1_2:40960910-40960929 None:intergenic 35.0%
CTGATGAAGATCCTGAAATT+AGG - chr1_2:40960929-40960948 Msa0070430:intron 35.0%
! AGGGTTAGTGTTAAAGAAGA+AGG - chr1_2:40960949-40960968 Msa0070430:intron 35.0%
AGGGATGTGATGAATTTGAA+AGG - chr1_2:40960991-40961010 Msa0070430:intron 35.0%
GGGATGTGATGAATTTGAAA+GGG - chr1_2:40960992-40961011 Msa0070430:intron 35.0%
GTGATGAATTTGAAAGGGAA+AGG - chr1_2:40960997-40961016 Msa0070430:intron 35.0%
!! GTTGATTTTGGAGAAGGTTA+GGG - chr1_2:40961020-40961039 Msa0070430:CDS 35.0%
ATGGATGAGAATAGATGGAA+GGG - chr1_2:40961249-40961268 Msa0070430:intron 35.0%
! CTAGGATTAGTAAAGAGGTT+GGG - chr1_2:40961289-40961308 Msa0070430:intron 35.0%
! TAGGATTAGTAAAGAGGTTG+GGG - chr1_2:40961290-40961309 Msa0070430:intron 35.0%
!! ATTTTTGATGGGTCTGTTAC+AGG - chr1_2:40961324-40961343 Msa0070430:intron 35.0%
!! TTTTTGATGGGTCTGTTACA+GGG - chr1_2:40961325-40961344 Msa0070430:intron 35.0%
ATTGTTCAGAGATGGAGATT+TGG - chr1_2:40961378-40961397 Msa0070430:intron 35.0%
TTTAAATTACGGGTGCATTG+TGG - chr1_2:40961487-40961506 Msa0070430:intron 35.0%
CTCGAATAAGTCAATCCAAA+CGG + chr1_2:40961523-40961542 None:intergenic 35.0%
! CTTATTCGAGTTTATGGACT+AGG - chr1_2:40961533-40961552 Msa0070430:intron 35.0%
!!! GTGTTTTCTGTTTCGAGTTA+AGG - chr1_2:40961575-40961594 Msa0070430:intron 35.0%
CACAAGTGTTTATGCCTAAA+AGG + chr1_2:40961671-40961690 None:intergenic 35.0%
ATCAGCTGCATTTGATTGTA+AGG - chr1_2:40962433-40962452 Msa0070430:CDS 35.0%
! TGAACAAAAGTATACAGCCA+CGG + chr1_2:40962547-40962566 None:intergenic 35.0%
! TTCAAATCACGTTCTGAACA+AGG + chr1_2:40962573-40962592 None:intergenic 35.0%
! TGAATGGCTGTGAATTTTGT+AGG - chr1_2:40962603-40962622 Msa0070430:CDS 35.0%
!! ATTCGATCTGTGTTTGGTTT+TGG - chr1_2:40962852-40962871 Msa0070430:CDS 35.0%
CTATGGTTAGATCATTGGAT+TGG - chr1_2:40962931-40962950 Msa0070430:CDS 35.0%
!! TTAGATCATTGGATTGGCAT+TGG - chr1_2:40962937-40962956 Msa0070430:CDS 35.0%
! TTTCTGCTGCTACTTATTTC+TGG - chr1_2:40962999-40963018 Msa0070430:CDS 35.0%
AAATAGACATACAACGAGCA+AGG + chr1_2:40963060-40963079 None:intergenic 35.0%
GTTACAATTATCCGTATCCT+TGG - chr1_2:40963115-40963134 Msa0070430:CDS 35.0%
TAATTCTGTCACCAAGGATA+CGG + chr1_2:40963129-40963148 None:intergenic 35.0%
ACAAGTTAATTCTGTCACCA+AGG + chr1_2:40963135-40963154 None:intergenic 35.0%
ACAATTGGTGTGGTTGTTTG+AGG + chr1_2:40960512-40960531 None:intergenic 40.0%
TCGCTACCAAACCAATTTCA+TGG - chr1_2:40960549-40960568 Msa0070430:three_prime_UTR 40.0%
GGTGAAGAGATTGTTGAAGA+AGG + chr1_2:40960683-40960702 None:intergenic 40.0%
! CAGGGATGATTTTACCTTTC+CGG + chr1_2:40960795-40960814 None:intergenic 40.0%
!! TAACGCTGATTTCGTAACCA+GGG + chr1_2:40960813-40960832 None:intergenic 40.0%
!! TTAACGCTGATTTCGTAACC+AGG + chr1_2:40960814-40960833 None:intergenic 40.0%
AAATCAGCGTTAACCTTACC+TGG - chr1_2:40960821-40960840 Msa0070430:exon 40.0%
AATCAGCGTTAACCTTACCT+GGG - chr1_2:40960822-40960841 Msa0070430:exon 40.0%
! AGAAGGAAAGGTTTTGCAGA+AGG - chr1_2:40960864-40960883 Msa0070430:CDS 40.0%
!! GAAAGGGAAAGGGTTGATTT+TGG - chr1_2:40961008-40961027 Msa0070430:CDS 40.0%
!! GAAAGGGTTGATTTTGGAGA+AGG - chr1_2:40961014-40961033 Msa0070430:CDS 40.0%
!! GGTTGATTTTGGAGAAGGTT+AGG - chr1_2:40961019-40961038 Msa0070430:CDS 40.0%
!! TTTTGGAGAAGGTTAGGGTT+TGG - chr1_2:40961025-40961044 Msa0070430:CDS 40.0%
TTTGGAGAAGGTTAGGGTTT+GGG - chr1_2:40961026-40961045 Msa0070430:CDS 40.0%
CTCTCAAGATCATCCTTAAC+CGG + chr1_2:40961075-40961094 None:intergenic 40.0%
GGATGATCTTGAGAGTAAGA+AGG - chr1_2:40961080-40961099 Msa0070430:intron 40.0%
! GAAGGTTTTGCCGAAGAATT+CGG - chr1_2:40961098-40961117 Msa0070430:intron 40.0%
GAAGTTTAATTGTAGGGCGA+AGG - chr1_2:40961209-40961228 Msa0070430:intron 40.0%
GATGGATGAGAATAGATGGA+AGG - chr1_2:40961248-40961267 Msa0070430:intron 40.0%
! GTTTTACGCAGAGTAATGCT+AGG - chr1_2:40961271-40961290 Msa0070430:intron 40.0%
! GCTAGGATTAGTAAAGAGGT+TGG - chr1_2:40961288-40961307 Msa0070430:intron 40.0%
! AGGATTAGTAAAGAGGTTGG+GGG - chr1_2:40961291-40961310 Msa0070430:intron 40.0%
! ACGAATTTGGAGTTGGAAGA+AGG - chr1_2:40961348-40961367 Msa0070430:intron 40.0%
! CGAATTTGGAGTTGGAAGAA+GGG - chr1_2:40961349-40961368 Msa0070430:intron 40.0%
! GGAAGTTGATTGTTCAGAGA+TGG - chr1_2:40961370-40961389 Msa0070430:intron 40.0%
AGAGATGGAGATTTGGAAGT+TGG - chr1_2:40961385-40961404 Msa0070430:intron 40.0%
ACCATAGATTGCATTCCATC+AGG + chr1_2:40961411-40961430 None:intergenic 40.0%
CAAACGGCGTTGTAATATTG+CGG - chr1_2:40962325-40962344 Msa0070430:CDS 40.0%
TACCTAATGCGGTCAAATCA+CGG + chr1_2:40962460-40962479 None:intergenic 40.0%
GTAGGTGAGAATTGTGTTTG+AGG - chr1_2:40962621-40962640 Msa0070430:CDS 40.0%
TGTTGTGGAGAATACAGAGA+GGG - chr1_2:40962803-40962822 Msa0070430:CDS 40.0%
GCCGTATTTCGCCATGAAAT+TGG + chr1_2:40960563-40960582 None:intergenic 45.0%
ATCGTAGAAGACAGACCAGA+CGG - chr1_2:40960601-40960620 Msa0070430:three_prime_UTR 45.0%
GACATTAACGTAGGCTTCAC+CGG + chr1_2:40960773-40960792 None:intergenic 45.0%
GTGAAGCCTACGTTAATGTC+CGG - chr1_2:40960773-40960792 Msa0070430:three_prime_UTR 45.0%
ACCTTTCCGGACATTAACGT+AGG + chr1_2:40960782-40960801 None:intergenic 45.0%
CGGAAAGGTAAAATCATCCC+TGG - chr1_2:40960793-40960812 Msa0070430:three_prime_UTR 45.0%
ATCACGTGACTCAGAAGGAA+AGG - chr1_2:40960852-40960871 Msa0070430:CDS 45.0%
! TGGGTTGAGAGTATGTCGAA+AGG - chr1_2:40961045-40961064 Msa0070430:CDS 45.0%
! GGGTTGAGAGTATGTCGAAA+GGG - chr1_2:40961046-40961065 Msa0070430:CDS 45.0%
! GGTTGAGAGTATGTCGAAAG+GGG - chr1_2:40961047-40961066 Msa0070430:CDS 45.0%
! GTTGAGAGTATGTCGAAAGG+GGG - chr1_2:40961048-40961067 Msa0070430:CDS 45.0%
TTTGCCGAAGAATTCGGTTG+CGG - chr1_2:40961104-40961123 Msa0070430:intron 45.0%
AAAGGAGGAGGAAGTTGTTC+CGG - chr1_2:40961137-40961156 Msa0070430:intron 45.0%
GTCTGTTACAGGGACGAATT+TGG - chr1_2:40961335-40961354 Msa0070430:intron 45.0%
! TACAGGGACGAATTTGGAGT+TGG - chr1_2:40961341-40961360 Msa0070430:intron 45.0%
! AGATTTGGAAGTTGGCCTGA+TGG - chr1_2:40961393-40961412 Msa0070430:intron 45.0%
GCCTGATGGAATGCAATCTA+TGG - chr1_2:40961407-40961426 Msa0070430:intron 45.0%
ACGGGTGCATTGTGGTATTT+AGG - chr1_2:40961495-40961514 Msa0070430:intron 45.0%
CGGGTGCATTGTGGTATTTA+GGG - chr1_2:40961496-40961515 Msa0070430:intron 45.0%
! TGTGGTATTTAGGGTCCGTT+TGG - chr1_2:40961505-40961524 Msa0070430:intron 45.0%
TCATAAACACTGCGACTGAC+CGG - chr1_2:40961708-40961727 Msa0070430:intron 45.0%
CGCAATATTACAACGCCGTT+TGG + chr1_2:40962327-40962346 None:intergenic 45.0%
ACAACCGTAACTCCAGATTC+AGG + chr1_2:40962649-40962668 None:intergenic 45.0%
ACACTTAACCTGTCTTCCTC+AGG + chr1_2:40962694-40962713 None:intergenic 45.0%
ATTTGGGAATGCGACTGTTG+TGG - chr1_2:40962788-40962807 Msa0070430:CDS 45.0%
CTGTTGTGGAGAATACAGAG+AGG - chr1_2:40962802-40962821 Msa0070430:CDS 45.0%
GTTGTGGAGAATACAGAGAG+GGG - chr1_2:40962804-40962823 Msa0070430:CDS 45.0%
TTGTGGAGAATACAGAGAGG+GGG - chr1_2:40962805-40962824 Msa0070430:CDS 45.0%
CAAACACAGATCGAATCCTC+TGG + chr1_2:40962848-40962867 None:intergenic 45.0%
CAGAGGATTCGATCTGTGTT+TGG - chr1_2:40962846-40962865 Msa0070430:CDS 45.0%
!!! TATTTTAAAATTTAACAATT+TGG + chr1_2:40962139-40962158 None:intergenic 5.0%
!! TAAAAATTAGTATATATTAT+GGG + chr1_2:40962245-40962264 None:intergenic 5.0%
!! ATAAAAATTAGTATATATTA+TGG + chr1_2:40962246-40962265 None:intergenic 5.0%
!! TTATATTTATTGAAAAAAAT+AGG - chr1_2:40963265-40963284 Msa0070430:five_prime_UTR 5.0%
!! TATATTTATTGAAAAAAATA+GGG - chr1_2:40963266-40963285 Msa0070430:five_prime_UTR 5.0%
TTCATGGCGAAATACGGCGA+AGG - chr1_2:40960565-40960584 Msa0070430:three_prime_UTR 50.0%
TTGTGGACGTTTGTTCCGTC+TGG + chr1_2:40960619-40960638 None:intergenic 50.0%
ACGGAACAAACGTCCACAAC+TGG - chr1_2:40960620-40960639 Msa0070430:three_prime_UTR 50.0%
GCCTACGTTAATGTCCGGAA+AGG - chr1_2:40960778-40960797 Msa0070430:three_prime_UTR 50.0%
AGCGTTAACCTTACCTGGGA+AGG - chr1_2:40960826-40960845 Msa0070430:exon 50.0%
GTGATTCACCTTCCCAGGTA+AGG + chr1_2:40960837-40960856 None:intergenic 50.0%
GGTGAATCACGTGACTCAGA+AGG - chr1_2:40960847-40960866 Msa0070430:CDS 50.0%
TCCACCGCAACCGAATTCTT+CGG + chr1_2:40961111-40961130 None:intergenic 50.0%
GGTTGCGGTGGAGAAGAAAA+AGG - chr1_2:40961119-40961138 Msa0070430:intron 50.0%
TGCGGTGGAGAAGAAAAAGG+AGG - chr1_2:40961122-40961141 Msa0070430:intron 50.0%
GGTGGAGAAGAAAAAGGAGG+AGG - chr1_2:40961125-40961144 Msa0070430:intron 50.0%
TTCCGGTTGCGAAGGAGAAA+GGG - chr1_2:40961154-40961173 Msa0070430:intron 50.0%
TTCCCTTTCTCCTTCGCAAC+CGG + chr1_2:40961159-40961178 None:intergenic 50.0%
TGCGAAGGAGAAAGGGAAGA+AGG - chr1_2:40961161-40961180 Msa0070430:intron 50.0%
GCGAAGGAGAAAGGGAAGAA+GGG - chr1_2:40961162-40961181 Msa0070430:intron 50.0%
CGAAGGAGAAAGGGAAGAAG+GGG - chr1_2:40961163-40961182 Msa0070430:intron 50.0%
CATAAACACTGCGACTGACC+GGG - chr1_2:40961709-40961728 Msa0070430:intron 50.0%
GACCGTGATTTGACCGCATT+AGG - chr1_2:40962455-40962474 Msa0070430:CDS 50.0%
GTGTTTGAGGAGCCTGAATC+TGG - chr1_2:40962634-40962653 Msa0070430:CDS 50.0%
! GGAGCCTGAATCTGGAGTTA+CGG - chr1_2:40962642-40962661 Msa0070430:CDS 50.0%
AACACACACTGATGTGCCTG+AGG - chr1_2:40962675-40962694 Msa0070430:CDS 50.0%
GGAGGGATCTCATATTCCAG+AGG - chr1_2:40962829-40962848 Msa0070430:CDS 50.0%
CAACGAGCAAGGATCATCCA+TGG + chr1_2:40963049-40963068 None:intergenic 50.0%
ACGGCGAAGGAGACAAACGT+TGG - chr1_2:40960578-40960597 Msa0070430:three_prime_UTR 55.0%
CAAACGTCCACAACTGGCAC+TGG - chr1_2:40960626-40960645 Msa0070430:three_prime_UTR 55.0%
TTTCGGACCAGTGCCAGTTG+TGG + chr1_2:40960636-40960655 None:intergenic 55.0%
GTCACGTGATTCACCTTCCC+AGG + chr1_2:40960842-40960861 None:intergenic 55.0%
GAGTATGTCGAAAGGGGGAC+CGG - chr1_2:40961053-40961072 Msa0070430:CDS 55.0%
GGAAGTTGTTCCGGTTGCGA+AGG - chr1_2:40961146-40961165 Msa0070430:intron 55.0%
GTTCCGGTTGCGAAGGAGAA+AGG - chr1_2:40961153-40961172 Msa0070430:intron 55.0%
TGATGTTGCGAGCTTAGCCG+TGG - chr1_2:40962527-40962546 Msa0070430:CDS 55.0%
CTGATGTGCCTGAGGAAGAC+AGG - chr1_2:40962683-40962702 Msa0070430:CDS 55.0%
TGGAGAATACAGAGAGGGGG+TGG - chr1_2:40962808-40962827 Msa0070430:CDS 55.0%
AGAATACAGAGAGGGGGTGG+AGG - chr1_2:40962811-40962830 Msa0070430:CDS 55.0%
GAATACAGAGAGGGGGTGGA+GGG - chr1_2:40962812-40962831 Msa0070430:CDS 55.0%
GTCGAAAGGGGGACCGGTTA+AGG - chr1_2:40961059-40961078 Msa0070430:CDS 60.0%
GCCGAAGAATTCGGTTGCGG+TGG - chr1_2:40961107-40961126 Msa0070430:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 40960421 40963290 40960421 ID=Msa0070430;Name=Msa0070430
chr1_2 mRNA 40960421 40963290 40960421 ID=Msa0070430-mRNA-1;Parent=Msa0070430;Name=Msa0070430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=147|1|1|1|1|1|3|409|344
chr1_2 exon 40960421 40960923 40960421 ID=Msa0070430-mRNA-1:exon:12455;Parent=Msa0070430-mRNA-1
chr1_2 exon 40961007 40961086 40961007 ID=Msa0070430-mRNA-1:exon:12454;Parent=Msa0070430-mRNA-1
chr1_2 exon 40962283 40963290 40962283 ID=Msa0070430-mRNA-1:exon:12453;Parent=Msa0070430-mRNA-1
chr1_2 five_prime_UTR 40963144 40963290 40963144 ID=Msa0070430-mRNA-1:five_prime_utr;Parent=Msa0070430-mRNA-1
chr1_2 CDS 40962283 40963143 40962283 ID=Msa0070430-mRNA-1:cds;Parent=Msa0070430-mRNA-1
chr1_2 CDS 40961007 40961086 40961007 ID=Msa0070430-mRNA-1:cds;Parent=Msa0070430-mRNA-1
chr1_2 CDS 40960830 40960923 40960830 ID=Msa0070430-mRNA-1:cds;Parent=Msa0070430-mRNA-1
chr1_2 three_prime_UTR 40960421 40960829 40960421 ID=Msa0070430-mRNA-1:three_prime_utr;Parent=Msa0070430-mRNA-1
Gene Sequence

>Msa0070430

ATGGCGAAATACGGCGAAGGAGACAAACGTTGGATCGTAGAAGACAGACCAGACGGAACAAACGTCCACAACTGGCACTGGTCCGAAACCAATTGTTTAGAATGGTCTAAAACCTTCTTCAACAATCTCTTCACCAATCTCAAAATCATCGATGACCACGAAAATAATCTTCAAATCACTGTCAAAAAAGTCGAAAAGCTTTCCGGTGAAGCCTACGTTAATGTCCGGAAAGGTAAAATCATCCCTGGTTACGAAATCAGCGTTAACCTTACCTGGGAAGGTGAATCACGTGACTCAGAAGGAAAGGTTTTGCAGAAGGTTAAGGGAAGTGTTGAAATTCCGTATATCTCTGATGAGAATGCTGATGAAGATCCTGAAATTAGGGTTAGTGTTAAAGAAGAAGGAAAAATTGCGAATAGTTTGAGGGATGTGATGAATTTGAAAGGGAAAGGGTTGATTTTGGAGAAGGTTAGGGTTTGGGTTGAGAGTATGTCGAAAGGGGGACCGGTTAAGGATGATCTTGAGAGTAAGAAGGTTTTGCCGAAGAATTCGGTTGCGGTGGAGAAGAAAAAGGAGGAGGAAGTTGTTCCGGTTGCGAAGGAGAAAGGGAAGAAGGGGTGTAAAGTGATTAGTTTGAATGAGAAGTTTAATTGTAGGGCGAAGGATTTGTTTGAGATAATGATGGATGAGAATAGATGGAAGGGTTTTACGCAGAGTAATGCTAGGATTAGTAAAGAGGTTGGGGGTGAGTTTAGTATTTTTGATGGGTCTGTTACAGGGACGAATTTGGAGTTGGAAGAAGGGAAGTTGATTGTTCAGAGATGGAGATTTGGAAGTTGGCCTGATGGAATGCAATCTATGGTGAGAATTGTGTTTGAGGAGCCTGAATCTGGAGTTACGGTTGTGAAGCTAACACACACTGATGTGCCTGAGGAAGACAGATTTGGGAATGCGACTGTTGTGGAGAATACAGAGAGGGGGTGGAGGGATCTCATATTCCAGAGGATTCGATCTGTGTTTGGTTTTGGAATGTGA

Protein sequence

>Msa0070430

MAKYGEGDKRWIVEDRPDGTNVHNWHWSETNCLEWSKTFFNNLFTNLKIIDDHENNLQITVKKVEKLSGEAYVNVRKGKIIPGYEISVNLTWEGESRDSEGKVLQKVKGSVEIPYISDENADEDPEIRVSVKEEGKIANSLRDVMNLKGKGLILEKVRVWVESMSKGGPVKDDLESKKVLPKNSVAVEKKKEEEVVPVAKEKGKKGCKVISLNEKFNCRAKDLFEIMMDENRWKGFTQSNARISKEVGGEFSIFDGSVTGTNLELEEGKLIVQRWRFGSWPDGMQSMVRIVFEEPESGVTVVKLTHTDVPEEDRFGNATVVENTERGWRDLIFQRIRSVFGFGM*