Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346060 | XP_003598119.1 | 83.190 | 464 | 34 | 3 | 1 | 420 | 1 | 464 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346060 | G7IV97 | 83.190 | 464 | 34 | 3 | 1 | 420 | 1 | 464 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022550 | Msa0346060 | 0.802572 | 5.265233e-49 | -8.615850e-47 |
| Msa0081520 | Msa0346060 | 0.811509 | 6.756040e-51 | -8.615850e-47 |
| Msa0094850 | Msa0346060 | 0.817296 | 3.549366e-52 | -8.615850e-47 |
| Msa0102870 | Msa0346060 | 0.832913 | 7.204521e-56 | -8.615850e-47 |
| Msa0152400 | Msa0346060 | 0.800679 | 1.287238e-48 | -8.615850e-47 |
| Msa0173890 | Msa0346060 | 0.810288 | 1.241884e-50 | -8.615850e-47 |
| Msa0197880 | Msa0346060 | 0.809563 | 1.778559e-50 | -8.615850e-47 |
| Msa0206840 | Msa0346060 | 0.822269 | 2.592733e-53 | -8.615850e-47 |
| Msa0258310 | Msa0346060 | 0.812089 | 5.051357e-51 | -8.615850e-47 |
| Msa0265850 | Msa0346060 | 0.812832 | 3.475809e-51 | -8.615850e-47 |
| Msa0267920 | Msa0346060 | 0.808909 | 2.456299e-50 | -8.615850e-47 |
| Msa0300270 | Msa0346060 | 0.802024 | 6.826310e-49 | -8.615850e-47 |
| Msa0300320 | Msa0346060 | 0.815091 | 1.104215e-51 | -8.615850e-47 |
| Msa0335800 | Msa0346060 | 0.808985 | 2.366032e-50 | -8.615850e-47 |
| Msa0341690 | Msa0346060 | 0.804337 | 2.267754e-49 | -8.615850e-47 |
| Msa0346060 | Msa0376630 | 0.801409 | 9.125981e-49 | -8.615850e-47 |
| Msa0346060 | Msa0378720 | 0.811786 | 5.880846e-51 | -8.615850e-47 |
| Msa0346060 | Msa0388770 | 0.822902 | 1.847007e-53 | -8.615850e-47 |
| Msa0346060 | Msa0393150 | 0.840034 | 1.108316e-57 | -8.615850e-47 |
| Msa0346060 | Msa0393440 | 0.833047 | 6.673642e-56 | -8.615850e-47 |
| Msa0346060 | Msa0467430 | 0.808109 | 3.640526e-50 | -8.615850e-47 |
| Msa0346060 | Msa0479200 | 0.804122 | 2.513887e-49 | -8.615850e-47 |
| Msa0346060 | Msa0488790 | 0.801781 | 7.656809e-49 | -8.615850e-47 |
| Msa0346060 | Msa0513160 | 0.821889 | 3.175696e-53 | -8.615850e-47 |
| Msa0346060 | Msa0576680 | 0.802351 | 5.845576e-49 | -8.615850e-47 |
| Msa0346060 | Msa0638480 | 0.804267 | 2.344533e-49 | -8.615850e-47 |
| Msa0346060 | Msa0710270 | 0.805968 | 1.033089e-49 | -8.615850e-47 |
| Msa0346060 | Msa0727640 | 0.803749 | 3.005482e-49 | -8.615850e-47 |
| Msa0346060 | Msa0742740 | 0.826279 | 2.960442e-54 | -8.615850e-47 |
| Msa0346060 | Msa0823820 | 0.842525 | 2.452372e-58 | -8.615850e-47 |
| Msa0346060 | Msa0861510 | 0.820716 | 5.921609e-53 | -8.615850e-47 |
| Msa0346060 | Msa0861530 | 0.810749 | 9.875239e-51 | -8.615850e-47 |
| Msa0346060 | Msa0861600 | 0.820253 | 7.564485e-53 | -8.615850e-47 |
| Msa0346060 | Msa0863010 | 0.834377 | 3.104566e-56 | -8.615850e-47 |
| Msa0346060 | Msa1020630 | 0.828488 | 8.745814e-55 | -8.615850e-47 |
| Msa0346060 | Msa1031930 | 0.843007 | 1.826188e-58 | -8.615850e-47 |
| Msa0346060 | Msa1071770 | 0.857347 | 1.735976e-62 | -8.615850e-47 |
| Msa0346060 | Msa1113800 | 0.840771 | 7.111873e-58 | -8.615850e-47 |
| Msa0346060 | Msa1158830 | 0.853280 | 2.652646e-61 | -8.615850e-47 |
| Msa0346060 | Msa1160500 | 0.827838 | 1.253959e-54 | -8.615850e-47 |
| Msa0346060 | Msa1181190 | 0.818396 | 2.003710e-52 | -8.615850e-47 |
| Msa0346060 | Msa1184330 | 0.807240 | 5.568755e-50 | -8.615850e-47 |
| Msa0346060 | Msa1208160 | 0.802909 | 4.484317e-49 | -8.615850e-47 |
| Msa0346060 | Msa1208430 | 0.803426 | 3.505433e-49 | -8.615850e-47 |
| Msa0346060 | Msa1227940 | 0.815196 | 1.046385e-51 | -8.615850e-47 |
| Msa0346060 | Msa1308140 | 0.807131 | 5.872014e-50 | -8.615850e-47 |
| Msa0346060 | Msa1356830 | 0.802162 | 6.395487e-49 | -8.615850e-47 |
| Msa0346060 | Msa1445190 | 0.820003 | 8.627108e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0346060 | MtrunA17_Chr3g0078491 | 86.256 | 422 | 33 | 4 | 1 | 420 | 1 | 399 | 0.0 | 683 |
| Msa0346060 | MtrunA17_Chr8g0356011 | 27.209 | 430 | 249 | 17 | 9 | 416 | 24 | 411 | 2.60e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACTGGTTCTTCTTC+TGG | 0.192285 | 3_1:+5993854 | None:intergenic |
| GGGACACTACCTGGAATATT+TGG | 0.193957 | 3_1:+5993881 | None:intergenic |
| TGTGATATTGGCAATATTAA+AGG | 0.196479 | 3_1:-5993938 | Msa0346060:CDS |
| AACTGGTTCTTCTTCTGGTT+GGG | 0.200791 | 3_1:+5993859 | None:intergenic |
| TTACTTTCAACATTTGATTT+AGG | 0.203987 | 3_1:+5993767 | None:intergenic |
| GCTAAAGTTGAGTATGATTT+TGG | 0.225786 | 3_1:-5994043 | Msa0346060:CDS |
| GTTCCATCACATTGTGATAT+TGG | 0.249319 | 3_1:-5993950 | Msa0346060:CDS |
| GAAATCATCAATGATAAATT+TGG | 0.257593 | 3_1:-5993131 | Msa0346060:CDS |
| GATCAGCTGGATCAAATAAA+AGG | 0.294691 | 3_1:-5993997 | Msa0346060:CDS |
| AGATCCTTTGCTTTCGTCCT+TGG | 0.309842 | 3_1:+5993205 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.312680 | 3_1:-5993537 | Msa0346060:CDS |
| AAAGCAACCATAAGAAAATA+TGG | 0.331016 | 3_1:-5994838 | Msa0346060:exon |
| AAGTGTAAAAGATGAGAATA+AGG | 0.339593 | 3_1:-5993336 | Msa0346060:CDS |
| CAACTGGTTCTTCTTCTGGT+TGG | 0.345411 | 3_1:+5993858 | None:intergenic |
| AAAAGAGTCTTTACCTCAAA+AGG | 0.355490 | 3_1:-5993579 | Msa0346060:CDS |
| ACTGGTTCTTCTTCTGGTTG+GGG | 0.391074 | 3_1:+5993860 | None:intergenic |
| ACATGAGTCTAAACCTCAAA+AGG | 0.394364 | 3_1:-5993423 | Msa0346060:CDS |
| CTGATTGTTCAAATTCCTGA+TGG | 0.416874 | 3_1:-5994741 | Msa0346060:intron |
| ACGCGAAGAACGATACTTGT+AGG | 0.421266 | 3_1:+5992935 | None:intergenic |
| ACAAGAGTCTTTACCTCAAA+AGG | 0.426442 | 3_1:-5993621 | Msa0346060:CDS |
| ACAATCAGAAGGTGTGAGTC+TGG | 0.429448 | 3_1:+5994756 | None:intergenic |
| CTTGATACTTTACATTGAAA+CGG | 0.443963 | 3_1:+5993972 | None:intergenic |
| AGTTACAAAAGTTGAGAGTA+AGG | 0.448013 | 3_1:-5993486 | Msa0346060:CDS |
| ATCACAATGCCAAATATTCC+AGG | 0.452545 | 3_1:-5993890 | Msa0346060:CDS |
| AATATTAAAGGTAAGATTGA+TGG | 0.465846 | 3_1:-5993926 | Msa0346060:CDS |
| CCTCAAAAGGGTCAAGATCA+AGG | 0.469599 | 3_1:-5993410 | Msa0346060:CDS |
| TGATGAGGTAAATGATCAAA+AGG | 0.479305 | 3_1:-5993816 | Msa0346060:CDS |
| ACAATTCTTGTGGTTGCACT+TGG | 0.497082 | 3_1:-5992969 | Msa0346060:CDS |
| CTGGTTCTTCTTCTGGTTGG+GGG | 0.510790 | 3_1:+5993861 | None:intergenic |
| GGTTGTAAAAGAAGAAACTA+AGG | 0.515240 | 3_1:-5993303 | Msa0346060:CDS |
| TCGTTCTTCGCGTAGAGCAT+AGG | 0.518943 | 3_1:-5992925 | None:intergenic |
| ATTCTTACCCTACACTTGAA+AGG | 0.523771 | 3_1:-5993232 | Msa0346060:CDS |
| CATGAGTCTAAACCTCAAAA+GGG | 0.531524 | 3_1:-5993422 | Msa0346060:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.542957 | 3_1:-5993536 | Msa0346060:CDS |
| AAAGAGTCTTTACCTCAAAA+GGG | 0.558710 | 3_1:-5993578 | Msa0346060:CDS |
| AATGAAAACATACAAAGAGA+AGG | 0.559419 | 3_1:-5993159 | Msa0346060:CDS |
| ATGAAAACATACAAAGAGAA+GGG | 0.576008 | 3_1:-5993158 | Msa0346060:CDS |
| TTGAGGTAAAGACTCTTGTG+TGG | 0.578109 | 3_1:+5993625 | None:intergenic |
| AAATAATAATAAAGCTGATG+AGG | 0.583535 | 3_1:-5993831 | Msa0346060:CDS |
| TTCGTAGTCATATGATTGCA+AGG | 0.590913 | 3_1:+5994812 | None:intergenic |
| AAAACCAAGGACGAAAGCAA+AGG | 0.593213 | 3_1:-5993209 | Msa0346060:CDS |
| TAAAGAAGATGCTACCCCAC+AGG | 0.594777 | 3_1:-5993747 | Msa0346060:CDS |
| TTGCCAATATCACAATGTGA+TGG | 0.596036 | 3_1:+5993947 | None:intergenic |
| CAGGAATTTGAACAATCAGA+AGG | 0.596828 | 3_1:+5994745 | None:intergenic |
| GTTGCAAAAGTTGATAGCAA+AGG | 0.598881 | 3_1:-5993683 | Msa0346060:CDS |
| ACTAGTTACAGCTTGAGTAG+TGG | 0.603492 | 3_1:+5993046 | None:intergenic |
| CTGTAACTAGTTATGCAAAG+AGG | 0.604653 | 3_1:-5993034 | Msa0346060:CDS |
| CACTGGTGCAACAATTCTTG+TGG | 0.614455 | 3_1:-5992979 | Msa0346060:CDS |
| GAGACTTCAACTCAATCAGA+AGG | 0.623031 | 3_1:-5993449 | Msa0346060:CDS |
| AAACAAAAGCTAATATACAC+TGG | 0.628935 | 3_1:-5992996 | Msa0346060:CDS |
| AACATACAAAGAGAAGGGAA+AGG | 0.642709 | 3_1:-5993153 | Msa0346060:CDS |
| AAAAGATTCTTGATTCAACA+AGG | 0.644606 | 3_1:-5993094 | Msa0346060:CDS |
| TGGAGGAAAAGTTTCAACTG+TGG | 0.675102 | 3_1:+5993181 | None:intergenic |
| AGAAACAGTAAAGTCACATG+TGG | 0.676764 | 3_1:-5993261 | Msa0346060:CDS |
| AAGGACAAGAATCAAAGACA+TGG | 0.679753 | 3_1:-5993075 | Msa0346060:CDS |
| TACACTTGAAAGGAAAACCA+AGG | 0.691297 | 3_1:-5993222 | Msa0346060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTGTTTATTTATTTTTTTT+TGG | - | chr3_1:5993108-5993127 | Msa0346060:CDS | 10.0% |
| !! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_1:5993613-5993632 | None:intergenic | 10.0% |
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3_1:5993646-5993665 | Msa0346060:CDS | 10.0% |
| !!! | TGTGTTTATTTATTTTTTTT+TGG | - | chr3_1:5993108-5993127 | Msa0346060:CDS | 10.0% |
| !! | AAAAAAAAAACTACTATAAA+AGG | + | chr3_1:5993613-5993632 | None:intergenic | 10.0% |
| !! | TTAAATAGTAATATTTAACA+GGG | - | chr3_1:5993646-5993665 | Msa0346060:CDS | 10.0% |
| !!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_1:5993287-5993306 | None:intergenic | 15.0% |
| !! | ATTACACAACATATTAAATT+TGG | - | chr3_1:5993299-5993318 | Msa0346060:CDS | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_1:5993645-5993664 | Msa0346060:CDS | 15.0% |
| !!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_1:5993941-5993960 | None:intergenic | 15.0% |
| !!! | TGTGTAATTTAAAGTTAAAT+AGG | + | chr3_1:5993287-5993306 | None:intergenic | 15.0% |
| !! | ATTACACAACATATTAAATT+TGG | - | chr3_1:5993299-5993318 | Msa0346060:CDS | 15.0% |
| !! | CTTAAATAGTAATATTTAAC+AGG | - | chr3_1:5993645-5993664 | Msa0346060:CDS | 15.0% |
| !!! | TTATTATTATTTTCTTCAAC+TGG | + | chr3_1:5993941-5993960 | None:intergenic | 15.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_1:5993003-5993022 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_1:5993160-5993179 | Msa0346060:CDS | 20.0% |
| !! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_1:5993170-5993189 | None:intergenic | 20.0% |
| !! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_1:5993251-5993270 | None:intergenic | 20.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_1:5993854-5993873 | Msa0346060:CDS | 20.0% |
| !! | AAATAATAATAAAGCTGATG+AGG | - | chr3_1:5993949-5993968 | Msa0346060:CDS | 20.0% |
| !!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_1:5994016-5994035 | None:intergenic | 20.0% |
| !! | GAAATCATCAATGATAAATT+TGG | - | chr3_1:5994649-5994668 | Msa0346060:intron | 20.0% |
| !!! | GTATTCTTTTTTTCAATTAC+TGG | + | chr3_1:5993003-5993022 | None:intergenic | 20.0% |
| !!! | CTTTTTTCCTTTCTTTATAA+AGG | - | chr3_1:5993160-5993179 | Msa0346060:CDS | 20.0% |
| !! | TTAAGAACCTTTATAAAGAA+AGG | + | chr3_1:5993170-5993189 | None:intergenic | 20.0% |
| !! | ATAAAAATTCTGATAAGCAA+TGG | + | chr3_1:5993251-5993270 | None:intergenic | 20.0% |
| !! | AATATTAAAGGTAAGATTGA+TGG | - | chr3_1:5993854-5993873 | Msa0346060:CDS | 20.0% |
| !! | AAATAATAATAAAGCTGATG+AGG | - | chr3_1:5993949-5993968 | Msa0346060:CDS | 20.0% |
| !!! | TTACTTTCAACATTTGATTT+AGG | + | chr3_1:5994016-5994035 | None:intergenic | 20.0% |
| !! | GAAATCATCAATGATAAATT+TGG | - | chr3_1:5994649-5994668 | Msa0346060:intron | 20.0% |
| ! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_1:5992942-5992961 | Msa0346060:CDS | 25.0% |
| ! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_1:5993274-5993293 | None:intergenic | 25.0% |
| !!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_1:5993422-5993441 | None:intergenic | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3_1:5993811-5993830 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3_1:5993842-5993861 | Msa0346060:CDS | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_1:5994228-5994247 | None:intergenic | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_1:5994444-5994463 | Msa0346060:intron | 25.0% |
| ! | TGAGAATAAGGAAAAACAAA+TGG | - | chr3_1:5994456-5994475 | Msa0346060:intron | 25.0% |
| !! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3_1:5994622-5994641 | None:intergenic | 25.0% |
| ! | AATGAAAACATACAAAGAGA+AGG | - | chr3_1:5994621-5994640 | Msa0346060:intron | 25.0% |
| ! | ATGAAAACATACAAAGAGAA+GGG | - | chr3_1:5994622-5994641 | Msa0346060:intron | 25.0% |
| ! | AAAAGATTCTTGATTCAACA+AGG | - | chr3_1:5994686-5994705 | Msa0346060:intron | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3_1:5994784-5994803 | Msa0346060:CDS | 25.0% |
| ! | AAAGCAACCATAAGAAAATA+TGG | - | chr3_1:5992942-5992961 | Msa0346060:CDS | 25.0% |
| ! | GTTAAATAGGTAAAAGTCTT+TGG | + | chr3_1:5993274-5993293 | None:intergenic | 25.0% |
| !!! | TAGTTCGGTTTTTAAAACAT+TGG | + | chr3_1:5993422-5993441 | None:intergenic | 25.0% |
| ! | CTTGATACTTTACATTGAAA+CGG | + | chr3_1:5993811-5993830 | None:intergenic | 25.0% |
| ! | TGTGATATTGGCAATATTAA+AGG | - | chr3_1:5993842-5993861 | Msa0346060:CDS | 25.0% |
| !!! | CTTTTTGAGAAATTTCTTCT+TGG | + | chr3_1:5994228-5994247 | None:intergenic | 25.0% |
| ! | AAGTGTAAAAGATGAGAATA+AGG | - | chr3_1:5994444-5994463 | Msa0346060:intron | 25.0% |
| ! | TGAGAATAAGGAAAAACAAA+TGG | - | chr3_1:5994456-5994475 | Msa0346060:intron | 25.0% |
| !! | TTCTCTTTGTATGTTTTCAT+TGG | + | chr3_1:5994622-5994641 | None:intergenic | 25.0% |
| ! | AATGAAAACATACAAAGAGA+AGG | - | chr3_1:5994621-5994640 | Msa0346060:intron | 25.0% |
| ! | ATGAAAACATACAAAGAGAA+GGG | - | chr3_1:5994622-5994641 | Msa0346060:intron | 25.0% |
| ! | AAAAGATTCTTGATTCAACA+AGG | - | chr3_1:5994686-5994705 | Msa0346060:intron | 25.0% |
| ! | AAACAAAAGCTAATATACAC+TGG | - | chr3_1:5994784-5994803 | Msa0346060:CDS | 25.0% |
| ! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_1:5992952-5992971 | None:intergenic | 30.0% |
| CAAGAACATATGAATAGAAG+TGG | + | chr3_1:5993090-5993109 | None:intergenic | 30.0% | |
| AAATTCTGATAAGCAATGGA+AGG | + | chr3_1:5993247-5993266 | None:intergenic | 30.0% | |
| TTGAACTTACGTAGAGTTAT+AGG | + | chr3_1:5993463-5993482 | None:intergenic | 30.0% | |
| !!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_1:5993523-5993542 | None:intergenic | 30.0% |
| !!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_1:5993527-5993546 | None:intergenic | 30.0% |
| TATAAAAGGCTAACATCTGT+TGG | + | chr3_1:5993599-5993618 | None:intergenic | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3_1:5993692-5993711 | Msa0346060:CDS | 30.0% | |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_1:5993737-5993756 | Msa0346060:CDS | 30.0% |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_1:5993741-5993760 | Msa0346060:CDS | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_1:5993742-5993761 | Msa0346060:CDS | 30.0% |
| TGATGAGGTAAATGATCAAA+AGG | - | chr3_1:5993964-5993983 | Msa0346060:CDS | 30.0% | |
| ! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_1:5994175-5994194 | None:intergenic | 30.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994201-5994220 | Msa0346060:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_1:5994202-5994221 | Msa0346060:intron | 30.0% | |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994201-5994220 | Msa0346060:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_1:5994202-5994221 | Msa0346060:intron | 30.0% | |
| AGTTACAAAAGTTGAGAGTA+AGG | - | chr3_1:5994294-5994313 | Msa0346060:intron | 30.0% | |
| ! | TTTGCATCTTTTGTATCTGT+AGG | + | chr3_1:5994409-5994428 | None:intergenic | 30.0% |
| GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_1:5994477-5994496 | Msa0346060:intron | 30.0% | |
| ! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3_1:5994619-5994638 | None:intergenic | 30.0% |
| ! | AAGGTAGCCATATTTTCTTA+TGG | + | chr3_1:5992952-5992971 | None:intergenic | 30.0% |
| CAAGAACATATGAATAGAAG+TGG | + | chr3_1:5993090-5993109 | None:intergenic | 30.0% | |
| AAATTCTGATAAGCAATGGA+AGG | + | chr3_1:5993247-5993266 | None:intergenic | 30.0% | |
| TTGAACTTACGTAGAGTTAT+AGG | + | chr3_1:5993463-5993482 | None:intergenic | 30.0% | |
| !!! | ATATTGCTTTTTACTACGGT+TGG | + | chr3_1:5993523-5993542 | None:intergenic | 30.0% |
| !!! | CCTCATATTGCTTTTTACTA+CGG | + | chr3_1:5993527-5993546 | None:intergenic | 30.0% |
| TATAAAAGGCTAACATCTGT+TGG | + | chr3_1:5993599-5993618 | None:intergenic | 30.0% | |
| AATTATTTAATGCACCCTAC+AGG | - | chr3_1:5993692-5993711 | Msa0346060:CDS | 30.0% | |
| ! | GCTAAAGTTGAGTATGATTT+TGG | - | chr3_1:5993737-5993756 | Msa0346060:CDS | 30.0% |
| ! | AAGTTGAGTATGATTTTGGA+AGG | - | chr3_1:5993741-5993760 | Msa0346060:CDS | 30.0% |
| !! | AGTTGAGTATGATTTTGGAA+GGG | - | chr3_1:5993742-5993761 | Msa0346060:CDS | 30.0% |
| TGATGAGGTAAATGATCAAA+AGG | - | chr3_1:5993964-5993983 | Msa0346060:CDS | 30.0% | |
| ! | ATTTCTTCTTGATCCTTTTG+AGG | + | chr3_1:5994175-5994194 | None:intergenic | 30.0% |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994201-5994220 | Msa0346060:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_1:5994202-5994221 | Msa0346060:intron | 30.0% | |
| AAAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994201-5994220 | Msa0346060:intron | 30.0% | |
| AAAGAGTCTTTACCTCAAAA+GGG | - | chr3_1:5994202-5994221 | Msa0346060:intron | 30.0% | |
| AGTTACAAAAGTTGAGAGTA+AGG | - | chr3_1:5994294-5994313 | Msa0346060:intron | 30.0% | |
| ! | TTTGCATCTTTTGTATCTGT+AGG | + | chr3_1:5994409-5994428 | None:intergenic | 30.0% |
| GGTTGTAAAAGAAGAAACTA+AGG | - | chr3_1:5994477-5994496 | Msa0346060:intron | 30.0% | |
| ! | TCTTTGTATGTTTTCATTGG+AGG | + | chr3_1:5994619-5994638 | None:intergenic | 30.0% |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3_1:5992971-5992990 | None:intergenic | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3_1:5993038-5993057 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3_1:5993039-5993058 | Msa0346060:CDS | 35.0% | |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_1:5993048-5993067 | Msa0346060:CDS | 35.0% |
| GTTAAACCAAACAAACCATC+AGG | + | chr3_1:5993057-5993076 | None:intergenic | 35.0% | |
| AACCGAACTAGATATCAAAC+CGG | - | chr3_1:5993432-5993451 | Msa0346060:CDS | 35.0% | |
| GCTCTTGTTCGAATGTTATA+AGG | + | chr3_1:5993489-5993508 | None:intergenic | 35.0% | |
| ! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_1:5993516-5993535 | None:intergenic | 35.0% |
| CCGTAGTAAAAAGCAATATG+AGG | - | chr3_1:5993524-5993543 | Msa0346060:CDS | 35.0% | |
| AAAGCAATATGAGGTTCAAC+CGG | - | chr3_1:5993533-5993552 | Msa0346060:CDS | 35.0% | |
| !! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_1:5993567-5993586 | Msa0346060:CDS | 35.0% |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3_1:5993783-5993802 | Msa0346060:CDS | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3_1:5993830-5993849 | Msa0346060:CDS | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3_1:5993836-5993855 | None:intergenic | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3_1:5993890-5993909 | Msa0346060:CDS | 35.0% | |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_1:5994097-5994116 | Msa0346060:intron | 35.0% |
| ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994159-5994178 | Msa0346060:intron | 35.0% | |
| ! | ATTTCTTCTTGACCCTTTTG+AGG | + | chr3_1:5994259-5994278 | None:intergenic | 35.0% |
| ACATGAGTCTAAACCTCAAA+AGG | - | chr3_1:5994357-5994376 | Msa0346060:intron | 35.0% | |
| CATGAGTCTAAACCTCAAAA+GGG | - | chr3_1:5994358-5994377 | Msa0346060:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3_1:5994519-5994538 | Msa0346060:intron | 35.0% | |
| ATTCTTACCCTACACTTGAA+AGG | - | chr3_1:5994548-5994567 | Msa0346060:intron | 35.0% | |
| !! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3_1:5994558-5994577 | None:intergenic | 35.0% |
| !! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3_1:5994559-5994578 | None:intergenic | 35.0% |
| TACACTTGAAAGGAAAACCA+AGG | - | chr3_1:5994558-5994577 | Msa0346060:intron | 35.0% | |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3_1:5994627-5994646 | Msa0346060:intron | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3_1:5994705-5994724 | Msa0346060:intron | 35.0% | |
| CTGTAACTAGTTATGCAAAG+AGG | - | chr3_1:5994746-5994765 | Msa0346060:CDS | 35.0% | |
| TTCGTAGTCATATGATTGCA+AGG | + | chr3_1:5992971-5992990 | None:intergenic | 35.0% | |
| CAGGAATTTGAACAATCAGA+AGG | + | chr3_1:5993038-5993057 | None:intergenic | 35.0% | |
| CTGATTGTTCAAATTCCTGA+TGG | - | chr3_1:5993039-5993058 | Msa0346060:CDS | 35.0% | |
| !! | CAAATTCCTGATGGTTTGTT+TGG | - | chr3_1:5993048-5993067 | Msa0346060:CDS | 35.0% |
| GTTAAACCAAACAAACCATC+AGG | + | chr3_1:5993057-5993076 | None:intergenic | 35.0% | |
| AACCGAACTAGATATCAAAC+CGG | - | chr3_1:5993432-5993451 | Msa0346060:CDS | 35.0% | |
| GCTCTTGTTCGAATGTTATA+AGG | + | chr3_1:5993489-5993508 | None:intergenic | 35.0% | |
| ! | TTTTTACTACGGTTGGATTC+TGG | + | chr3_1:5993516-5993535 | None:intergenic | 35.0% |
| CCGTAGTAAAAAGCAATATG+AGG | - | chr3_1:5993524-5993543 | Msa0346060:CDS | 35.0% | |
| AAAGCAATATGAGGTTCAAC+CGG | - | chr3_1:5993533-5993552 | Msa0346060:CDS | 35.0% | |
| !! | GGTTCGGTTTTTGAAAACAT+TGG | - | chr3_1:5993567-5993586 | Msa0346060:CDS | 35.0% |
| GATCAGCTGGATCAAATAAA+AGG | - | chr3_1:5993783-5993802 | Msa0346060:CDS | 35.0% | |
| GTTCCATCACATTGTGATAT+TGG | - | chr3_1:5993830-5993849 | Msa0346060:CDS | 35.0% | |
| TTGCCAATATCACAATGTGA+TGG | + | chr3_1:5993836-5993855 | None:intergenic | 35.0% | |
| ATCACAATGCCAAATATTCC+AGG | - | chr3_1:5993890-5993909 | Msa0346060:CDS | 35.0% | |
| !! | GTTGCAAAAGTTGATAGCAA+AGG | - | chr3_1:5994097-5994116 | Msa0346060:intron | 35.0% |
| ACAAGAGTCTTTACCTCAAA+AGG | - | chr3_1:5994159-5994178 | Msa0346060:intron | 35.0% | |
| ! | ATTTCTTCTTGACCCTTTTG+AGG | + | chr3_1:5994259-5994278 | None:intergenic | 35.0% |
| ACATGAGTCTAAACCTCAAA+AGG | - | chr3_1:5994357-5994376 | Msa0346060:intron | 35.0% | |
| CATGAGTCTAAACCTCAAAA+GGG | - | chr3_1:5994358-5994377 | Msa0346060:intron | 35.0% | |
| AGAAACAGTAAAGTCACATG+TGG | - | chr3_1:5994519-5994538 | Msa0346060:intron | 35.0% | |
| ATTCTTACCCTACACTTGAA+AGG | - | chr3_1:5994548-5994567 | Msa0346060:intron | 35.0% | |
| !! | TGGTTTTCCTTTCAAGTGTA+GGG | + | chr3_1:5994558-5994577 | None:intergenic | 35.0% |
| !! | TTGGTTTTCCTTTCAAGTGT+AGG | + | chr3_1:5994559-5994578 | None:intergenic | 35.0% |
| TACACTTGAAAGGAAAACCA+AGG | - | chr3_1:5994558-5994577 | Msa0346060:intron | 35.0% | |
| AACATACAAAGAGAAGGGAA+AGG | - | chr3_1:5994627-5994646 | Msa0346060:intron | 35.0% | |
| AAGGACAAGAATCAAAGACA+TGG | - | chr3_1:5994705-5994724 | Msa0346060:intron | 35.0% | |
| CTGTAACTAGTTATGCAAAG+AGG | - | chr3_1:5994746-5994765 | Msa0346060:CDS | 35.0% | |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_1:5993755-5993774 | Msa0346060:CDS | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_1:5993770-5993789 | Msa0346060:CDS | 40.0% |
| ! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_1:5993924-5993943 | None:intergenic | 40.0% |
| ! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_1:5993929-5993948 | None:intergenic | 40.0% |
| !! | AACTTTTTGAGCATCCTGTG+GGG | + | chr3_1:5994050-5994069 | None:intergenic | 40.0% |
| !! | GAACTTTTTGAGCATCCTGT+GGG | + | chr3_1:5994051-5994070 | None:intergenic | 40.0% |
| !! | TGAACTTTTTGAGCATCCTG+TGG | + | chr3_1:5994052-5994071 | None:intergenic | 40.0% |
| TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_1:5994158-5994177 | None:intergenic | 40.0% | |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_1:5994217-5994236 | None:intergenic | 40.0% |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3_1:5994331-5994350 | Msa0346060:intron | 40.0% | |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3_1:5994571-5994590 | Msa0346060:intron | 40.0% | |
| TGGAGGAAAAGTTTCAACTG+TGG | + | chr3_1:5994602-5994621 | None:intergenic | 40.0% | |
| ACTAGTTACAGCTTGAGTAG+TGG | + | chr3_1:5994737-5994756 | None:intergenic | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3_1:5994811-5994830 | Msa0346060:CDS | 40.0% | |
| ! | TTTGGAAGGGTGAGAGTTTT+TGG | - | chr3_1:5993755-5993774 | Msa0346060:CDS | 40.0% |
| !!! | GTTTTTGGTGAAAGATCAGC+TGG | - | chr3_1:5993770-5993789 | Msa0346060:CDS | 40.0% |
| ! | AACTGGTTCTTCTTCTGGTT+GGG | + | chr3_1:5993924-5993943 | None:intergenic | 40.0% |
| ! | TCTTCAACTGGTTCTTCTTC+TGG | + | chr3_1:5993929-5993948 | None:intergenic | 40.0% |
| !! | AACTTTTTGAGCATCCTGTG+GGG | + | chr3_1:5994050-5994069 | None:intergenic | 40.0% |
| !! | GAACTTTTTGAGCATCCTGT+GGG | + | chr3_1:5994051-5994070 | None:intergenic | 40.0% |
| !! | TGAACTTTTTGAGCATCCTG+TGG | + | chr3_1:5994052-5994071 | None:intergenic | 40.0% |
| TTGAGGTAAAGACTCTTGTG+TGG | + | chr3_1:5994158-5994177 | None:intergenic | 40.0% | |
| ! | ATTTCTTCTTGGCCCTTTTG+AGG | + | chr3_1:5994217-5994236 | None:intergenic | 40.0% |
| GAGACTTCAACTCAATCAGA+AGG | - | chr3_1:5994331-5994350 | Msa0346060:intron | 40.0% | |
| AAAACCAAGGACGAAAGCAA+AGG | - | chr3_1:5994571-5994590 | Msa0346060:intron | 40.0% | |
| TGGAGGAAAAGTTTCAACTG+TGG | + | chr3_1:5994602-5994621 | None:intergenic | 40.0% | |
| ACTAGTTACAGCTTGAGTAG+TGG | + | chr3_1:5994737-5994756 | None:intergenic | 40.0% | |
| ACAATTCTTGTGGTTGCACT+TGG | - | chr3_1:5994811-5994830 | Msa0346060:CDS | 40.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3_1:5993027-5993046 | None:intergenic | 45.0% |
| !! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_1:5993437-5993456 | None:intergenic | 45.0% |
| ! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_1:5993454-5993473 | None:intergenic | 45.0% |
| CAATATGAGGTTCAACCGGT+TGG | - | chr3_1:5993537-5993556 | Msa0346060:CDS | 45.0% | |
| GGGACACTACCTGGAATATT+TGG | + | chr3_1:5993902-5993921 | None:intergenic | 45.0% | |
| ! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_1:5993923-5993942 | None:intergenic | 45.0% |
| ! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_1:5993925-5993944 | None:intergenic | 45.0% |
| TAAAGAAGATGCTACCCCAC+AGG | - | chr3_1:5994033-5994052 | Msa0346060:CDS | 45.0% | |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_1:5994373-5994392 | None:intergenic | 45.0% |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_1:5994370-5994389 | Msa0346060:intron | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_1:5994578-5994597 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3_1:5994801-5994820 | Msa0346060:CDS | 45.0% | |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3_1:5994848-5994867 | None:intergenic | 45.0% | |
| ! | ACAATCAGAAGGTGTGAGTC+TGG | + | chr3_1:5993027-5993046 | None:intergenic | 45.0% |
| !! | CGCCGGTTTGATATCTAGTT+CGG | + | chr3_1:5993437-5993456 | None:intergenic | 45.0% |
| ! | CGTAGAGTTATAGGTATCGC+CGG | + | chr3_1:5993454-5993473 | None:intergenic | 45.0% |
| CAATATGAGGTTCAACCGGT+TGG | - | chr3_1:5993537-5993556 | Msa0346060:CDS | 45.0% | |
| GGGACACTACCTGGAATATT+TGG | + | chr3_1:5993902-5993921 | None:intergenic | 45.0% | |
| ! | ACTGGTTCTTCTTCTGGTTG+GGG | + | chr3_1:5993923-5993942 | None:intergenic | 45.0% |
| ! | CAACTGGTTCTTCTTCTGGT+TGG | + | chr3_1:5993925-5993944 | None:intergenic | 45.0% |
| TAAAGAAGATGCTACCCCAC+AGG | - | chr3_1:5994033-5994052 | Msa0346060:CDS | 45.0% | |
| ! | CCTTGATCTTGACCCTTTTG+AGG | + | chr3_1:5994373-5994392 | None:intergenic | 45.0% |
| CCTCAAAAGGGTCAAGATCA+AGG | - | chr3_1:5994370-5994389 | Msa0346060:intron | 45.0% | |
| AGATCCTTTGCTTTCGTCCT+TGG | + | chr3_1:5994578-5994597 | None:intergenic | 45.0% | |
| CACTGGTGCAACAATTCTTG+TGG | - | chr3_1:5994801-5994820 | Msa0346060:CDS | 45.0% | |
| ACGCGAAGAACGATACTTGT+AGG | + | chr3_1:5994848-5994867 | None:intergenic | 45.0% | |
| GTTCAACCGGTTGGACAGTT+CGG | - | chr3_1:5993546-5993565 | Msa0346060:CDS | 50.0% | |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_1:5993705-5993724 | Msa0346060:CDS | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_1:5993713-5993732 | Msa0346060:CDS | 50.0% |
| ! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_1:5993922-5993941 | None:intergenic | 50.0% |
| GTTCAACCGGTTGGACAGTT+CGG | - | chr3_1:5993546-5993565 | Msa0346060:CDS | 50.0% | |
| ! | ACCCTACAGGTTTTGCACGA+GGG | - | chr3_1:5993705-5993724 | Msa0346060:CDS | 50.0% |
| ! | GGTTTTGCACGAGGGGATAT+TGG | - | chr3_1:5993713-5993732 | Msa0346060:CDS | 50.0% |
| ! | CTGGTTCTTCTTCTGGTTGG+GGG | + | chr3_1:5993922-5993941 | None:intergenic | 50.0% |
| ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_1:5993551-5993570 | Msa0346060:CDS | 55.0% | |
| ACCGAACCGAACTGTCCAAC+CGG | + | chr3_1:5993555-5993574 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_1:5993704-5993723 | Msa0346060:CDS | 55.0% |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_1:5993709-5993728 | None:intergenic | 55.0% | |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_1:5993706-5993725 | Msa0346060:CDS | 55.0% |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_1:5993710-5993729 | None:intergenic | 55.0% | |
| ACCGGTTGGACAGTTCGGTT+CGG | - | chr3_1:5993551-5993570 | Msa0346060:CDS | 55.0% | |
| ACCGAACCGAACTGTCCAAC+CGG | + | chr3_1:5993555-5993574 | None:intergenic | 55.0% | |
| ! | CACCCTACAGGTTTTGCACG+AGG | - | chr3_1:5993704-5993723 | Msa0346060:CDS | 55.0% |
| CCCCTCGTGCAAAACCTGTA+GGG | + | chr3_1:5993709-5993728 | None:intergenic | 55.0% | |
| ! | CCCTACAGGTTTTGCACGAG+GGG | - | chr3_1:5993706-5993725 | Msa0346060:CDS | 55.0% |
| TCCCCTCGTGCAAAACCTGT+AGG | + | chr3_1:5993710-5993729 | None:intergenic | 55.0% | |
| TCTGGTTGGGGGACACTACC+TGG | + | chr3_1:5993911-5993930 | None:intergenic | 60.0% | |
| TCTGGTTGGGGGACACTACC+TGG | + | chr3_1:5993911-5993930 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 5992926 | 5994876 | 5992926 | ID=Msa0346060;Name=Msa0346060 |
| chr3_1 | mRNA | 5992926 | 5994876 | 5992926 | ID=Msa0346060-mRNA-1;Parent=Msa0346060;Name=Msa0346060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=35|1|0.5|1|1|1|2|0|420 |
| chr3_1 | exon | 5992926 | 5994088 | 5992926 | ID=Msa0346060-mRNA-1:exon:1755;Parent=Msa0346060-mRNA-1 |
| chr3_1 | exon | 5994742 | 5994876 | 5994742 | ID=Msa0346060-mRNA-1:exon:1754;Parent=Msa0346060-mRNA-1 |
| chr3_1 | five_prime_UTR | 5994842 | 5994876 | 5994842 | ID=Msa0346060-mRNA-1:five_prime_utr;Parent=Msa0346060-mRNA-1 |
| chr3_1 | CDS | 5994742 | 5994841 | 5994742 | ID=Msa0346060-mRNA-1:cds;Parent=Msa0346060-mRNA-1 |
| chr3_1 | CDS | 5992926 | 5994088 | 5992926 | ID=Msa0346060-mRNA-1:cds;Parent=Msa0346060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
