Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231690 | XP_003593098.1 | 97.642 | 424 | 10 | 0 | 1 | 424 | 1 | 424 | 0.0 | 839 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231690 | A2Q483 | 97.642 | 424 | 10 | 0 | 1 | 424 | 1 | 424 | 0.0 | 839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033110 | Msa0231690 | 0.815424 | 9.310773e-52 | -8.615850e-47 |
| Msa0033260 | Msa0231690 | 0.818313 | 2.091908e-52 | -8.615850e-47 |
| Msa0056030 | Msa0231690 | 0.812913 | 3.337708e-51 | -8.615850e-47 |
| Msa0091410 | Msa0231690 | 0.818536 | 1.862220e-52 | -8.615850e-47 |
| Msa0180020 | Msa0231690 | 0.805155 | 1.530267e-49 | -8.615850e-47 |
| Msa0189320 | Msa0231690 | 0.853913 | 1.744692e-61 | -8.615850e-47 |
| Msa0231690 | Msa0272450 | 0.808109 | 3.639565e-50 | -8.615850e-47 |
| Msa0231690 | Msa0279240 | 0.813647 | 2.302963e-51 | -8.615850e-47 |
| Msa0231690 | Msa0327330 | 0.800584 | 1.345846e-48 | -8.615850e-47 |
| Msa0231690 | Msa0406200 | 0.811961 | 5.388696e-51 | -8.615850e-47 |
| Msa0231690 | Msa0510350 | 0.807076 | 6.029882e-50 | -8.615850e-47 |
| Msa0231690 | Msa0643560 | 0.806728 | 7.145998e-50 | -8.615850e-47 |
| Msa0231690 | Msa0753140 | 0.817795 | 2.739818e-52 | -8.615850e-47 |
| Msa0231690 | Msa0981840 | 0.806237 | 9.066571e-50 | -8.615850e-47 |
| Msa0231690 | Msa1041850 | 0.800857 | 1.183671e-48 | -8.615850e-47 |
| Msa0231690 | Msa1128060 | 0.813712 | 2.227348e-51 | -8.615850e-47 |
| Msa0231690 | Msa1231840 | 0.808551 | 2.929467e-50 | -8.615850e-47 |
| Msa0231690 | Msa1275050 | 0.808531 | 2.958630e-50 | -8.615850e-47 |
| Msa0231690 | Msa1374120 | 0.807918 | 3.997542e-50 | -8.615850e-47 |
| Msa0231690 | Msa1386050 | 0.807796 | 4.243947e-50 | -8.615850e-47 |
| Msa0231690 | Msa1388860 | 0.808092 | 3.671167e-50 | -8.615850e-47 |
| Msa0231690 | Msa1389510 | 0.806809 | 6.867203e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231690 | MtrunA17_Chr2g0278361 | 97.719 | 263 | 6 | 0 | 1 | 263 | 1 | 263 | 0.0 | 517 |
| Msa0231690 | MtrunA17_Chr2g0278371 | 96.951 | 164 | 5 | 0 | 261 | 424 | 3 | 166 | 1.52e-112 | 327 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231690 | AT1G15200.1 | 60.471 | 425 | 157 | 7 | 1 | 421 | 1 | 418 | 3.41e-153 | 441 |
| Msa0231690 | AT1G15200.2 | 59.767 | 430 | 157 | 8 | 1 | 421 | 1 | 423 | 1.39e-150 | 434 |
| Msa0231690 | AT1G15200.3 | 54.449 | 472 | 157 | 8 | 1 | 421 | 1 | 465 | 1.47e-143 | 417 |
| Msa0231690 | AT1G15200.4 | 56.522 | 414 | 126 | 6 | 1 | 364 | 1 | 410 | 2.21e-138 | 404 |
Find 105 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTGGCGACGGTGTAAA+TGG | 0.197730 | 2_2:+3961548 | Msa0231690:CDS |
| AAGAATGCTGGGTCAGCTTT+TGG | 0.205036 | 2_2:+3961836 | Msa0231690:CDS |
| CCACTTTGGTGAGAATTAAA+AGG | 0.228725 | 2_2:-3961602 | None:intergenic |
| CCAACTCTGATCAGACTCTT+AGG | 0.236456 | 2_2:+3963265 | Msa0231690:intron |
| AAGCTTGGGTCTTCATTCTT+AGG | 0.263540 | 2_2:-3961798 | None:intergenic |
| TCGTGGCGGGCCATTACTTT+AGG | 0.269703 | 2_2:-3964369 | None:intergenic |
| AAGACCCAAGCTTGGTTAAT+AGG | 0.278596 | 2_2:+3961808 | Msa0231690:CDS |
| TGCCAATGTCGAGAAGGATT+TGG | 0.350517 | 2_2:+3964051 | Msa0231690:CDS |
| AGAAACTATGGACAAAGAAT+TGG | 0.358572 | 2_2:+3964129 | Msa0231690:CDS |
| TTGTTCCTATTAACCAAGCT+TGG | 0.375958 | 2_2:-3961813 | None:intergenic |
| TCTTCATCCAAGGGCTTGTT+AGG | 0.377589 | 2_2:-3963731 | None:intergenic |
| ACTTTCATCTGCTGTTGTTA+AGG | 0.382044 | 2_2:+3960954 | Msa0231690:CDS |
| TCAGAATTTACAAGAAACTA+TGG | 0.385332 | 2_2:+3964117 | Msa0231690:CDS |
| TGTTCCTATTAACCAAGCTT+GGG | 0.386465 | 2_2:-3961812 | None:intergenic |
| TCTTCATTATTGCTTCCGTC+AGG | 0.395037 | 2_2:-3964193 | None:intergenic |
| GATGAGTTAGATGATGATTC+TGG | 0.398301 | 2_2:+3964268 | Msa0231690:CDS |
| AATTGGAGTTACTGTTTCTT+CGG | 0.408862 | 2_2:+3963319 | Msa0231690:CDS |
| CACTGCTGACAGATATCAAT+GGG | 0.415465 | 2_2:+3960543 | Msa0231690:exon |
| TAGATGATGATTCTGGTAGA+AGG | 0.416825 | 2_2:+3964275 | Msa0231690:CDS |
| GATGAAAGTCTCCGTTTAGC+AGG | 0.424796 | 2_2:-3960940 | None:intergenic |
| AATGGTAACAAGTCTTTGTA+TGG | 0.425566 | 2_2:-3964649 | None:intergenic |
| TGGGAATGAAGGTTGGTGAT+GGG | 0.439260 | 2_2:+3961486 | Msa0231690:intron |
| TCTCGACATTGGCAAGATAC+TGG | 0.446496 | 2_2:-3964042 | None:intergenic |
| TTGGGAATGAAGGTTGGTGA+TGG | 0.450428 | 2_2:+3961485 | Msa0231690:intron |
| TTGTAGTTTATCCCTTGCTA+TGG | 0.451136 | 2_2:+3964426 | Msa0231690:three_prime_UTR |
| CTGACTGAGGATGCTGATGC+TGG | 0.454470 | 2_2:+3961512 | Msa0231690:CDS |
| ATATGCAGGATTTCCTTGAA+TGG | 0.461808 | 2_2:+3963969 | Msa0231690:intron |
| ACAAAGAATTGGATACTCAT+AGG | 0.467181 | 2_2:+3964140 | Msa0231690:CDS |
| AAGATCAACCTCCTGCTAAA+CGG | 0.472285 | 2_2:+3960929 | Msa0231690:CDS |
| CTATTTGCCTAACAAGCCCT+TGG | 0.473535 | 2_2:+3963724 | Msa0231690:CDS |
| TAATAGGAACAAAAGAATGC+TGG | 0.474916 | 2_2:+3961824 | Msa0231690:CDS |
| AAACTCACGTGACGAACAAA+GGG | 0.476069 | 2_2:-3960810 | None:intergenic |
| CAACTGGCGACGGTGTAAAT+GGG | 0.478755 | 2_2:+3961549 | Msa0231690:CDS |
| GGGAATGAAGGTTGGTGATG+GGG | 0.483415 | 2_2:+3961487 | Msa0231690:intron |
| GGAAACACAAAGGATTCAAC+TGG | 0.488309 | 2_2:+3961533 | Msa0231690:CDS |
| TAAGACAGAAGAAAAGCAAT+TGG | 0.497515 | 2_2:+3963302 | Msa0231690:CDS |
| CAACTCTGATCAGACTCTTA+GGG | 0.502752 | 2_2:+3963266 | Msa0231690:intron |
| GTTTATCCCTTGCTATGGTT+AGG | 0.503014 | 2_2:+3964431 | Msa0231690:three_prime_UTR |
| CTACCGTTGGTCAGAGTGAT+GGG | 0.506388 | 2_2:+3961576 | Msa0231690:CDS |
| CAGTATGATATGCATTGAAA+GGG | 0.509424 | 2_2:+3960471 | None:intergenic |
| AAGGAAGACAAGCAACTCTC+AGG | 0.514836 | 2_2:+3962034 | Msa0231690:CDS |
| CCACTGCTGACAGATATCAA+TGG | 0.518463 | 2_2:+3960542 | Msa0231690:exon |
| CTCGGAACATGTACTGTAGT+AGG | 0.524190 | 2_2:-3961768 | None:intergenic |
| CTCTTCTAGACAATCCACTT+TGG | 0.526100 | 2_2:-3961616 | None:intergenic |
| CTCCAAATCCTTCTCGACAT+TGG | 0.526542 | 2_2:-3964053 | None:intergenic |
| TTGTTAGGCAAATAGTAGAT+TGG | 0.527744 | 2_2:-3963716 | None:intergenic |
| AATGGGGAGTACTGCGGCGG+CGG | 0.528494 | 2_2:+3960560 | Msa0231690:exon |
| TTAGGCAAATAGTAGATTGG+AGG | 0.532407 | 2_2:-3963713 | None:intergenic |
| TGGAGTTACTGTTTCTTCGG+TGG | 0.533767 | 2_2:+3963322 | Msa0231690:CDS |
| GACACGTCTTCTTCATCCAA+GGG | 0.533999 | 2_2:-3963740 | None:intergenic |
| GAAACTCACGTGACGAACAA+AGG | 0.534311 | 2_2:-3960811 | None:intergenic |
| GGGAAGAAAGTGAAAGGCTC+AGG | 0.534722 | 2_2:+3963109 | Msa0231690:CDS |
| GCTACCGTTGGTCAGAGTGA+TGG | 0.537876 | 2_2:+3961575 | Msa0231690:CDS |
| ATCGAATTATTGCGGAGAAG+AGG | 0.540147 | 2_2:-3960777 | None:intergenic |
| CTTCATTATTGCTTCCGTCA+GGG | 0.541208 | 2_2:-3964192 | None:intergenic |
| TGATATCTGTCAGCAGTGGA+TGG | 0.548089 | 2_2:-3960538 | None:intergenic |
| AATAGGAACAAAAGAATGCT+GGG | 0.549273 | 2_2:+3961825 | Msa0231690:CDS |
| ACATTATCAGTAGCAGCTGC+AGG | 0.554611 | 2_2:-3964343 | None:intergenic |
| CAGTTATCAAAGAAATTCAA+TGG | 0.555332 | 2_2:+3961640 | Msa0231690:CDS |
| TGTTGGAGAGGATGATATGA+TGG | 0.556616 | 2_2:+3964243 | Msa0231690:CDS |
| GATGTGGAAGATATAAATGT+TGG | 0.557283 | 2_2:+3964226 | Msa0231690:CDS |
| TAAGAATGAAGACCCAAGCT+TGG | 0.568208 | 2_2:+3961800 | Msa0231690:CDS |
| AACTAATAAGAGCAAAGAAG+AGG | 0.573040 | 2_2:+3963763 | Msa0231690:CDS |
| GATCCTCGTGGTCTTCGTAA+AGG | 0.573435 | 2_2:+3960741 | Msa0231690:CDS |
| TCGAGAAGGATTTGGAGAGA+TGG | 0.581176 | 2_2:+3964059 | Msa0231690:CDS |
| TGACACGTCTTCTTCATCCA+AGG | 0.581305 | 2_2:-3963741 | None:intergenic |
| CTAGGCTGAACAAAGAGCAC+GGG | 0.584888 | 2_2:+3963089 | Msa0231690:intron |
| TAATTGATGTGTGTCGTGGC+GGG | 0.590013 | 2_2:-3964382 | None:intergenic |
| ATAATGTAGACCTAAAGTAA+TGG | 0.597645 | 2_2:+3964359 | Msa0231690:CDS |
| GAAAGTCTCCGTTTAGCAGG+AGG | 0.601833 | 2_2:-3960937 | None:intergenic |
| GATTGATGAAACAATTAAGA+CGG | 0.605607 | 2_2:+3964297 | Msa0231690:CDS |
| ACAGAAGCCTAACCATAGCA+AGG | 0.607074 | 2_2:-3964438 | None:intergenic |
| AATGCAAGAAATGCAAGGAA+AGG | 0.607774 | 2_2:+3964085 | Msa0231690:CDS |
| TGAAGATGATGACGATGATG+TGG | 0.609828 | 2_2:+3964210 | Msa0231690:CDS |
| CGTGACGAACAAAGGGACGC+TGG | 0.614280 | 2_2:-3960803 | None:intergenic |
| ACTGTACCAGAAATTCAGAA+AGG | 0.616763 | 2_2:+3962015 | Msa0231690:intron |
| GAGCACGGGAAGAAAGTGAA+AGG | 0.618225 | 2_2:+3963103 | Msa0231690:CDS |
| TCAGACTCTTAGGGCACGTG+TGG | 0.619163 | 2_2:+3963275 | Msa0231690:intron |
| TCATTCTTAGGCAATACCCT+CGG | 0.621285 | 2_2:-3961786 | None:intergenic |
| CCTAGGCTGAACAAAGAGCA+CGG | 0.623670 | 2_2:+3963088 | Msa0231690:intron |
| AGCAGCTGCAGGATCTGCAG+TGG | 0.627406 | 2_2:-3964332 | None:intergenic |
| CAGAAGCCTAACCATAGCAA+GGG | 0.628560 | 2_2:-3964437 | None:intergenic |
| GGCAGAATGCAAGAAATGCA+AGG | 0.632033 | 2_2:+3964080 | Msa0231690:CDS |
| GTAAATGGGAATGCTACCGT+TGG | 0.634713 | 2_2:+3961563 | Msa0231690:CDS |
| TACTACAGTACATGTTCCGA+GGG | 0.634754 | 2_2:+3961770 | Msa0231690:CDS |
| ATAATTGATGTGTGTCGTGG+CGG | 0.634918 | 2_2:-3964383 | None:intergenic |
| GTATCTTGCCAATGTCGAGA+AGG | 0.637469 | 2_2:+3964045 | Msa0231690:CDS |
| CCATTGATATCTGTCAGCAG+TGG | 0.637657 | 2_2:-3960542 | None:intergenic |
| CTACTACAGTACATGTTCCG+AGG | 0.637778 | 2_2:+3961769 | Msa0231690:CDS |
| GATACTCATAGGCTCGAGCA+TGG | 0.640754 | 2_2:+3964151 | Msa0231690:CDS |
| TGGTGATGGGGAGCTGACTG+AGG | 0.643295 | 2_2:+3961499 | Msa0231690:CDS |
| ACAAAGGATTCAACTGGCGA+CGG | 0.655809 | 2_2:+3961539 | Msa0231690:CDS |
| CTTCCCATCACTCTGACCAA+CGG | 0.662261 | 2_2:-3961579 | None:intergenic |
| GGAAGATATAAATGTTGGAG+AGG | 0.663384 | 2_2:+3964231 | Msa0231690:CDS |
| ACTTCTTCGTCAACAACGCG+AGG | 0.664591 | 2_2:+3960620 | Msa0231690:CDS |
| TTTGAATTCAGATAACTGAG+AGG | 0.666122 | 2_2:+3960712 | Msa0231690:intron |
| ATCAATGGGGAGTACTGCGG+CGG | 0.666208 | 2_2:+3960557 | Msa0231690:exon |
| TGCTGATGCTGGAAACACAA+AGG | 0.667782 | 2_2:+3961523 | Msa0231690:CDS |
| GATATCAATGGGGAGTACTG+CGG | 0.681442 | 2_2:+3960554 | Msa0231690:exon |
| TGAATAATTGATGTGTGTCG+TGG | 0.687769 | 2_2:-3964386 | None:intergenic |
| CAAGCAACTCTCAGGAACAG+AGG | 0.688540 | 2_2:+3962042 | Msa0231690:CDS |
| GAGAGGCTTCGAGATCCTCG+TGG | 0.698160 | 2_2:+3960729 | Msa0231690:CDS |
| GCTGGCGAATCGAATTATTG+CGG | 0.709531 | 2_2:-3960785 | None:intergenic |
| GCACCTTTACGAAGACCACG+AGG | 0.748381 | 2_2:-3960744 | None:intergenic |
| ACTGCTGACAGATATCAATG+GGG | 0.806650 | 2_2:+3960544 | Msa0231690:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTTTTTATTTTCATTA+TGG | + | chr2_2:3961289-3961308 | Msa0231690:intron | 10.0% |
| !! | AAGAATCTTAATATTAAAAT+GGG | - | chr2_2:3962115-3962134 | None:intergenic | 10.0% |
| !!! | ATATTAAAAACATTTGTTAA+TGG | - | chr2_2:3963227-3963246 | None:intergenic | 10.0% |
| !!! | ATGGATTTGTTTTTTTAATT+AGG | + | chr2_2:3960885-3960904 | Msa0231690:intron | 15.0% |
| !!! | TGGATTTGTTTTTTTAATTA+GGG | + | chr2_2:3960886-3960905 | Msa0231690:intron | 15.0% |
| !! | GAAGAATCTTAATATTAAAA+TGG | - | chr2_2:3962116-3962135 | None:intergenic | 15.0% |
| !! | AAAATTGATAAAATTATGCT+TGG | + | chr2_2:3962272-3962291 | Msa0231690:intron | 15.0% |
| !! | AACATGTATAAATTGAAATT+TGG | + | chr2_2:3962445-3962464 | Msa0231690:intron | 15.0% |
| !! | ACATGTATAAATTGAAATTT+GGG | + | chr2_2:3962446-3962465 | Msa0231690:intron | 15.0% |
| !!! | ATCATATTTGAAATTTAACA+GGG | - | chr2_2:3963871-3963890 | None:intergenic | 15.0% |
| !!! | TATCATATTTGAAATTTAAC+AGG | - | chr2_2:3963872-3963891 | None:intergenic | 15.0% |
| !!! | ATTTGTTTTTTTAATTAGGG+TGG | + | chr2_2:3960889-3960908 | Msa0231690:intron | 20.0% |
| !!! | TGTAATGTTTGATGATTTAA+GGG | + | chr2_2:3961052-3961071 | Msa0231690:intron | 20.0% |
| !!! | TGTTTGTTACAGATTAAATT+TGG | + | chr2_2:3961076-3961095 | Msa0231690:intron | 20.0% |
| !! | TACAAAATAACTTATGTGTA+TGG | + | chr2_2:3961165-3961184 | Msa0231690:intron | 20.0% |
| !! | GAATTTAAGCTATAACAAAT+AGG | - | chr2_2:3961264-3961283 | None:intergenic | 20.0% |
| !!! | TTTTAACTGTATATCTTGTT+TGG | + | chr2_2:3961466-3961485 | Msa0231690:intron | 20.0% |
| !!! | TTTAACTGTATATCTTGTTT+GGG | + | chr2_2:3961467-3961486 | Msa0231690:intron | 20.0% |
| !! | AGAAAAATATAAGTGTATAG+AGG | - | chr2_2:3961985-3962004 | None:intergenic | 20.0% |
| !! | TCAAATAACATCAATCAATA+AGG | - | chr2_2:3962305-3962324 | None:intergenic | 20.0% |
| !! | CAATCTAAAAAAGTTAGTAA+GGG | - | chr2_2:3962690-3962709 | None:intergenic | 20.0% |
| !! | TCAATCTAAAAAAGTTAGTA+AGG | - | chr2_2:3962691-3962710 | None:intergenic | 20.0% |
| !! | TGATAAGTCTAATTGAAAAA+CGG | - | chr2_2:3962929-3962948 | None:intergenic | 20.0% |
| !!! | AAAGACTAAGCAATTTTATA+AGG | + | chr2_2:3963358-3963377 | Msa0231690:CDS | 20.0% |
| !!! | AAGTTTTTCTTTGATCTTTT+TGG | + | chr2_2:3963647-3963666 | Msa0231690:intron | 20.0% |
| !!! | AGTTTTTCTTTGATCTTTTT+GGG | + | chr2_2:3963648-3963667 | Msa0231690:intron | 20.0% |
| !!! | ACTTTTTGTCTTTGTATTTT+TGG | + | chr2_2:3964511-3964530 | Msa0231690:three_prime_UTR | 20.0% |
| !!! | CTTTTTGTCTTTGTATTTTT+GGG | + | chr2_2:3964512-3964531 | Msa0231690:three_prime_UTR | 20.0% |
| !!! | TCTTTCCGTTTTTGTTAATT+AGG | + | chr2_2:3960832-3960851 | Msa0231690:intron | 25.0% |
| !!! | CTTTCCGTTTTTGTTAATTA+GGG | + | chr2_2:3960833-3960852 | Msa0231690:intron | 25.0% |
| ! | TGAACCCTAATTAACAAAAA+CGG | - | chr2_2:3960840-3960859 | None:intergenic | 25.0% |
| ! | TTACACTTCAATTGAGTTTA+TGG | + | chr2_2:3960866-3960885 | Msa0231690:intron | 25.0% |
| ! | CTAAACTTGTAAATCATAAG+TGG | - | chr2_2:3960992-3961011 | None:intergenic | 25.0% |
| !! | GTGTAATGTTTGATGATTTA+AGG | + | chr2_2:3961051-3961070 | Msa0231690:intron | 25.0% |
| ! | AAAAGAAGTGAATTTCTCTA+TGG | + | chr2_2:3961134-3961153 | Msa0231690:intron | 25.0% |
| ! | TGCAATTGTCTGATAATTTA+AGG | + | chr2_2:3961211-3961230 | Msa0231690:intron | 25.0% |
| ! | GCAATTGTCTGATAATTTAA+GGG | + | chr2_2:3961212-3961231 | Msa0231690:intron | 25.0% |
| ! | AAACAAACTCAGAATAGTTA+TGG | + | chr2_2:3961313-3961332 | Msa0231690:intron | 25.0% |
| ! | CAGTTATCAAAGAAATTCAA+TGG | + | chr2_2:3961640-3961659 | Msa0231690:CDS | 25.0% |
| ! | ATAATCATCATTCATCAAGA+AGG | - | chr2_2:3961689-3961708 | None:intergenic | 25.0% |
| ! | TCTTGATGAATGATGATTAT+TGG | + | chr2_2:3961689-3961708 | Msa0231690:intron | 25.0% |
| ! | ATGTATGTTAGTTGATTACT+TGG | + | chr2_2:3961872-3961891 | Msa0231690:intron | 25.0% |
| ! | ATTAGGTTTAACAACACAAA+TGG | - | chr2_2:3962178-3962197 | None:intergenic | 25.0% |
| ! | CTAAATATCCTTAAACAAAG+TGG | - | chr2_2:3962229-3962248 | None:intergenic | 25.0% |
| !! | ATTTTATCAATTTTCAGTGC+AGG | - | chr2_2:3962266-3962285 | None:intergenic | 25.0% |
| ! | ATGTACATAAAGAAACACTT+AGG | - | chr2_2:3962546-3962565 | None:intergenic | 25.0% |
| ! | TCTTCAACTGTAAATTTATG+AGG | + | chr2_2:3963388-3963407 | Msa0231690:intron | 25.0% |
| !! | AACAAACTAGTGAAACATTT+TGG | - | chr2_2:3963430-3963449 | None:intergenic | 25.0% |
| !!! | CTGCAGGTTATTTTTATTTT+TGG | + | chr2_2:3963499-3963518 | Msa0231690:intron | 25.0% |
| ! | GTCTCAATAAAATGTGAATA+TGG | - | chr2_2:3963536-3963555 | None:intergenic | 25.0% |
| !! | TTGATTGAATGTAATTTTGC+AGG | + | chr2_2:3963678-3963697 | Msa0231690:intron | 25.0% |
| ! | TCTGAGTATCAAAAACAAAT+TGG | + | chr2_2:3964016-3964035 | Msa0231690:CDS | 25.0% |
| ! | CTGAGTATCAAAAACAAATT+GGG | + | chr2_2:3964017-3964036 | Msa0231690:CDS | 25.0% |
| ! | TGAGTATCAAAAACAAATTG+GGG | + | chr2_2:3964018-3964037 | Msa0231690:CDS | 25.0% |
| ! | TCAGAATTTACAAGAAACTA+TGG | + | chr2_2:3964117-3964136 | Msa0231690:CDS | 25.0% |
| ! | GATTGATGAAACAATTAAGA+CGG | + | chr2_2:3964297-3964316 | Msa0231690:CDS | 25.0% |
| ! | ATAATGTAGACCTAAAGTAA+TGG | + | chr2_2:3964359-3964378 | Msa0231690:CDS | 25.0% |
| !!! | TTTGCTGTATTTGTTTTTCT+AGG | + | chr2_2:3964586-3964605 | Msa0231690:three_prime_UTR | 25.0% |
| !!! | TTGCTGTATTTGTTTTTCTA+GGG | + | chr2_2:3964587-3964606 | Msa0231690:three_prime_UTR | 25.0% |
| TTTGAATTCAGATAACTGAG+AGG | + | chr2_2:3960712-3960731 | Msa0231690:intron | 30.0% | |
| TTGTCTGATAATTTAAGGGA+TGG | + | chr2_2:3961216-3961235 | Msa0231690:intron | 30.0% | |
| TGTCTGATAATTTAAGGGAT+GGG | + | chr2_2:3961217-3961236 | Msa0231690:intron | 30.0% | |
| GGCTGTTATAGCTTAAATTA+AGG | + | chr2_2:3961238-3961257 | Msa0231690:intron | 30.0% | |
| ! | TATATCTTGTTTGGGAATGA+AGG | + | chr2_2:3961475-3961494 | Msa0231690:intron | 30.0% |
| ! | AAGCTTTGTATCTAATGCTA+TGG | + | chr2_2:3961716-3961735 | Msa0231690:intron | 30.0% |
| TAATAGGAACAAAAGAATGC+TGG | + | chr2_2:3961824-3961843 | Msa0231690:CDS | 30.0% | |
| AATAGGAACAAAAGAATGCT+GGG | + | chr2_2:3961825-3961844 | Msa0231690:CDS | 30.0% | |
| ATATAAGTGTATAGAGGAGA+GGG | - | chr2_2:3961979-3961998 | None:intergenic | 30.0% | |
| AATATAAGTGTATAGAGGAG+AGG | - | chr2_2:3961980-3961999 | None:intergenic | 30.0% | |
| ATTCTTCCTATTGAAGAAGT+TGG | + | chr2_2:3962129-3962148 | Msa0231690:intron | 30.0% | |
| TTAACAACACAAATGGCTAT+AGG | - | chr2_2:3962171-3962190 | None:intergenic | 30.0% | |
| TATTGTCAAGTGTATGCATT+AGG | - | chr2_2:3962195-3962214 | None:intergenic | 30.0% | |
| ! | CACTTAATCCACTTTGTTTA+AGG | + | chr2_2:3962218-3962237 | Msa0231690:intron | 30.0% |
| ACATCAATCAATAAGGACAA+TGG | - | chr2_2:3962298-3962317 | None:intergenic | 30.0% | |
| TTGATGAATACATCATTGTC+TGG | + | chr2_2:3962354-3962373 | Msa0231690:intron | 30.0% | |
| TAAAGAAACACTTAGGTATG+CGG | - | chr2_2:3962539-3962558 | None:intergenic | 30.0% | |
| TGCACAAGATCAATATGTTA+AGG | + | chr2_2:3962619-3962638 | Msa0231690:intron | 30.0% | |
| ! | ACTTTGATAGCCAATTGTAT+AGG | - | chr2_2:3962747-3962766 | None:intergenic | 30.0% |
| GATTGCATACAATCTTAAGA+TGG | + | chr2_2:3962785-3962804 | Msa0231690:intron | 30.0% | |
| ATCTTAAGATGGATGATAGT+TGG | + | chr2_2:3962796-3962815 | Msa0231690:intron | 30.0% | |
| TCTTAAGATGGATGATAGTT+GGG | + | chr2_2:3962797-3962816 | Msa0231690:intron | 30.0% | |
| ATTGCAAGCACAGTAATAAA+TGG | - | chr2_2:3962958-3962977 | None:intergenic | 30.0% | |
| ATTTCGAGCTTCAAATAGAA+GGG | - | chr2_2:3962988-3963007 | None:intergenic | 30.0% | |
| TATTTCGAGCTTCAAATAGA+AGG | - | chr2_2:3962989-3963008 | None:intergenic | 30.0% | |
| TTCTTTGCAGAGTTTCATTA+TGG | + | chr2_2:3963199-3963218 | Msa0231690:intron | 30.0% | |
| TAAGACAGAAGAAAAGCAAT+TGG | + | chr2_2:3963302-3963321 | Msa0231690:CDS | 30.0% | |
| ! | AATTGGAGTTACTGTTTCTT+CGG | + | chr2_2:3963319-3963338 | Msa0231690:CDS | 30.0% |
| ! | AATGTGAATATGGACACTTT+TGG | - | chr2_2:3963526-3963545 | None:intergenic | 30.0% |
| ! | TATTGAAGCAATTTGATGAC+TGG | + | chr2_2:3963587-3963606 | Msa0231690:intron | 30.0% |
| TTGTTAGGCAAATAGTAGAT+TGG | - | chr2_2:3963719-3963738 | None:intergenic | 30.0% | |
| AACTAATAAGAGCAAAGAAG+AGG | + | chr2_2:3963763-3963782 | Msa0231690:CDS | 30.0% | |
| ! | TTCTTGCATTTTTCCATTCA+AGG | - | chr2_2:3963985-3964004 | None:intergenic | 30.0% |
| AGAAACTATGGACAAAGAAT+TGG | + | chr2_2:3964129-3964148 | Msa0231690:CDS | 30.0% | |
| ACAAAGAATTGGATACTCAT+AGG | + | chr2_2:3964140-3964159 | Msa0231690:CDS | 30.0% | |
| ! | TCAGGGATTTTTCTTTTCTT+GGG | - | chr2_2:3964178-3964197 | None:intergenic | 30.0% |
| AAGAAAAGAAAAATCCCTGA+CGG | + | chr2_2:3964178-3964197 | Msa0231690:CDS | 30.0% | |
| GATGTGGAAGATATAAATGT+TGG | + | chr2_2:3964226-3964245 | Msa0231690:CDS | 30.0% | |
| CTATATTCATACTCTCTCTC+TGG | + | chr2_2:3960660-3960679 | Msa0231690:intron | 35.0% | |
| ACTTTCATCTGCTGTTGTTA+AGG | + | chr2_2:3960954-3960973 | Msa0231690:CDS | 35.0% | |
| ! | TTTTCCCCTTTGTGGTTTAA+GGG | - | chr2_2:3961434-3961453 | None:intergenic | 35.0% |
| CCACTTTGGTGAGAATTAAA+AGG | - | chr2_2:3961605-3961624 | None:intergenic | 35.0% | |
| !! | CCTTTTAATTCTCACCAAAG+TGG | + | chr2_2:3961602-3961621 | Msa0231690:CDS | 35.0% |
| TGTTCCTATTAACCAAGCTT+GGG | - | chr2_2:3961815-3961834 | None:intergenic | 35.0% | |
| TTGTTCCTATTAACCAAGCT+TGG | - | chr2_2:3961816-3961835 | None:intergenic | 35.0% | |
| ACTGTACCAGAAATTCAGAA+AGG | + | chr2_2:3962015-3962034 | Msa0231690:intron | 35.0% | |
| TGTCTTCCTTTCTGAATTTC+TGG | - | chr2_2:3962024-3962043 | None:intergenic | 35.0% | |
| TCACAACCAACTTCTTCAAT+AGG | - | chr2_2:3962138-3962157 | None:intergenic | 35.0% | |
| ! | TATTGAAGAAGTTGGTTGTG+AGG | + | chr2_2:3962137-3962156 | Msa0231690:intron | 35.0% |
| TGAAATCTCTCGTAAAGACT+TGG | + | chr2_2:3962322-3962341 | Msa0231690:intron | 35.0% | |
| AAAATCTACCAACGAGTACA+AGG | - | chr2_2:3962418-3962437 | None:intergenic | 35.0% | |
| !! | ACTCGTTGGTAGATTTTGAT+AGG | + | chr2_2:3962421-3962440 | Msa0231690:intron | 35.0% |
| ! | TTTGGGACTTCTATTTAAGC+AGG | + | chr2_2:3962463-3962482 | Msa0231690:intron | 35.0% |
| CTTCTATTTAAGCAGGATTC+AGG | + | chr2_2:3962470-3962489 | Msa0231690:intron | 35.0% | |
| TATTTAAGCAGGATTCAGGA+GGG | + | chr2_2:3962474-3962493 | Msa0231690:intron | 35.0% | |
| ! | TTGATAGCCAATTGTATAGG+TGG | - | chr2_2:3962744-3962763 | None:intergenic | 35.0% |
| TTGGGATTACAAATTCCGAA+CGG | + | chr2_2:3962815-3962834 | Msa0231690:intron | 35.0% | |
| TAACATGCTTGTTCGAACTA+TGG | - | chr2_2:3962857-3962876 | None:intergenic | 35.0% | |
| TTACTGTGCTTGCAATTTCT+AGG | + | chr2_2:3962962-3962981 | Msa0231690:intron | 35.0% | |
| AAGATAGAGAGAAGACAAAG+TGG | - | chr2_2:3963022-3963041 | None:intergenic | 35.0% | |
| ! | TTCAGGGTATTATGAAGCTT+TGG | - | chr2_2:3963061-3963080 | None:intergenic | 35.0% |
| TTAGGCAAATAGTAGATTGG+AGG | - | chr2_2:3963716-3963735 | None:intergenic | 35.0% | |
| AAGAAGAGGTAGTCAAACTT+AGG | + | chr2_2:3963777-3963796 | Msa0231690:intron | 35.0% | |
| TGTTCATCTTTGCAATATGC+AGG | + | chr2_2:3963955-3963974 | Msa0231690:intron | 35.0% | |
| ATATGCAGGATTTCCTTGAA+TGG | + | chr2_2:3963969-3963988 | Msa0231690:intron | 35.0% | |
| ATGGAAAAATGCAAGAAGAG+AGG | + | chr2_2:3963988-3964007 | Msa0231690:CDS | 35.0% | |
| AATGCAAGAAATGCAAGGAA+AGG | + | chr2_2:3964085-3964104 | Msa0231690:CDS | 35.0% | |
| ! | GTCAGGGATTTTTCTTTTCT+TGG | - | chr2_2:3964179-3964198 | None:intergenic | 35.0% |
| GGAAGATATAAATGTTGGAG+AGG | + | chr2_2:3964231-3964250 | Msa0231690:CDS | 35.0% | |
| GATGAGTTAGATGATGATTC+TGG | + | chr2_2:3964268-3964287 | Msa0231690:CDS | 35.0% | |
| TAGATGATGATTCTGGTAGA+AGG | + | chr2_2:3964275-3964294 | Msa0231690:CDS | 35.0% | |
| TGAATAATTGATGTGTGTCG+TGG | - | chr2_2:3964389-3964408 | None:intergenic | 35.0% | |
| TTGTAGTTTATCCCTTGCTA+TGG | + | chr2_2:3964426-3964445 | Msa0231690:three_prime_UTR | 35.0% | |
| CACTGCTGACAGATATCAAT+GGG | + | chr2_2:3960543-3960562 | Msa0231690:exon | 40.0% | |
| ACTGCTGACAGATATCAATG+GGG | + | chr2_2:3960544-3960563 | Msa0231690:exon | 40.0% | |
| ATCGAATTATTGCGGAGAAG+AGG | - | chr2_2:3960780-3960799 | None:intergenic | 40.0% | |
| AAACTCACGTGACGAACAAA+GGG | - | chr2_2:3960813-3960832 | None:intergenic | 40.0% | |
| AAGATCAACCTCCTGCTAAA+CGG | + | chr2_2:3960929-3960948 | Msa0231690:CDS | 40.0% | |
| ! | GTTTTCCCCTTTGTGGTTTA+AGG | - | chr2_2:3961435-3961454 | None:intergenic | 40.0% |
| ! | TCTTGTTTGGGAATGAAGGT+TGG | + | chr2_2:3961479-3961498 | Msa0231690:intron | 40.0% |
| GGAAACACAAAGGATTCAAC+TGG | + | chr2_2:3961533-3961552 | Msa0231690:CDS | 40.0% | |
| CTCTTCTAGACAATCCACTT+TGG | - | chr2_2:3961619-3961638 | None:intergenic | 40.0% | |
| TATGGTCTGTTCTTCATGTC+AGG | + | chr2_2:3961734-3961753 | Msa0231690:intron | 40.0% | |
| TACTACAGTACATGTTCCGA+GGG | + | chr2_2:3961770-3961789 | Msa0231690:CDS | 40.0% | |
| TCATTCTTAGGCAATACCCT+CGG | - | chr2_2:3961789-3961808 | None:intergenic | 40.0% | |
| AAGCTTGGGTCTTCATTCTT+AGG | - | chr2_2:3961801-3961820 | None:intergenic | 40.0% | |
| TAAGAATGAAGACCCAAGCT+TGG | + | chr2_2:3961800-3961819 | Msa0231690:CDS | 40.0% | |
| AAGACCCAAGCTTGGTTAAT+AGG | + | chr2_2:3961808-3961827 | Msa0231690:CDS | 40.0% | |
| TGATATGTCCTTGTACTCGT+TGG | + | chr2_2:3962407-3962426 | Msa0231690:intron | 40.0% | |
| CTATTTAAGCAGGATTCAGG+AGG | + | chr2_2:3962473-3962492 | Msa0231690:intron | 40.0% | |
| GGGCAAACAACTTAATAGGA+GGG | - | chr2_2:3962719-3962738 | None:intergenic | 40.0% | |
| TGGGCAAACAACTTAATAGG+AGG | - | chr2_2:3962720-3962739 | None:intergenic | 40.0% | |
| GGTTGGGCAAACAACTTAAT+AGG | - | chr2_2:3962723-3962742 | None:intergenic | 40.0% | |
| AGCCAATTGTATAGGTGGTT+GGG | - | chr2_2:3962739-3962758 | None:intergenic | 40.0% | |
| TAGCCAATTGTATAGGTGGT+TGG | - | chr2_2:3962740-3962759 | None:intergenic | 40.0% | |
| AGTTCGAACAAGCATGTTAC+AGG | + | chr2_2:3962858-3962877 | Msa0231690:intron | 40.0% | |
| GCGAACAGATTGCTGAAAAA+CGG | + | chr2_2:3963142-3963161 | Msa0231690:CDS | 40.0% | |
| AACAGATTGCTGAAAAACGG+AGG | + | chr2_2:3963145-3963164 | Msa0231690:CDS | 40.0% | |
| CTAAGAGTCTGATCAGAGTT+GGG | - | chr2_2:3963267-3963286 | None:intergenic | 40.0% | |
| CAACTCTGATCAGACTCTTA+GGG | + | chr2_2:3963266-3963285 | Msa0231690:intron | 40.0% | |
| CTTCATTATTGCTTCCGTCA+GGG | - | chr2_2:3964195-3964214 | None:intergenic | 40.0% | |
| TCTTCATTATTGCTTCCGTC+AGG | - | chr2_2:3964196-3964215 | None:intergenic | 40.0% | |
| ! | TGAAGATGATGACGATGATG+TGG | + | chr2_2:3964210-3964229 | Msa0231690:CDS | 40.0% |
| TGTTGGAGAGGATGATATGA+TGG | + | chr2_2:3964243-3964262 | Msa0231690:CDS | 40.0% | |
| ATAATTGATGTGTGTCGTGG+CGG | - | chr2_2:3964386-3964405 | None:intergenic | 40.0% | |
| ! | GTTTATCCCTTGCTATGGTT+AGG | + | chr2_2:3964431-3964450 | Msa0231690:three_prime_UTR | 40.0% |
| TGATATCTGTCAGCAGTGGA+TGG | - | chr2_2:3960541-3960560 | None:intergenic | 45.0% | |
| CCATTGATATCTGTCAGCAG+TGG | - | chr2_2:3960545-3960564 | None:intergenic | 45.0% | |
| CCACTGCTGACAGATATCAA+TGG | + | chr2_2:3960542-3960561 | Msa0231690:exon | 45.0% | |
| !! | GATATCAATGGGGAGTACTG+CGG | + | chr2_2:3960554-3960573 | Msa0231690:exon | 45.0% |
| GCTGGCGAATCGAATTATTG+CGG | - | chr2_2:3960788-3960807 | None:intergenic | 45.0% | |
| GAAACTCACGTGACGAACAA+AGG | - | chr2_2:3960814-3960833 | None:intergenic | 45.0% | |
| GATGAAAGTCTCCGTTTAGC+AGG | - | chr2_2:3960943-3960962 | None:intergenic | 45.0% | |
| TTGTGGTTTAAGGGTCAGGA+AGG | - | chr2_2:3961425-3961444 | None:intergenic | 45.0% | |
| TCCTGACCCTTAAACCACAA+AGG | + | chr2_2:3961425-3961444 | Msa0231690:intron | 45.0% | |
| CCTGACCCTTAAACCACAAA+GGG | + | chr2_2:3961426-3961445 | Msa0231690:intron | 45.0% | |
| CTGACCCTTAAACCACAAAG+GGG | + | chr2_2:3961427-3961446 | Msa0231690:intron | 45.0% | |
| ! | CACTTCTGTTTTCCCCTTTG+TGG | - | chr2_2:3961442-3961461 | None:intergenic | 45.0% |
| !! | TTGGGAATGAAGGTTGGTGA+TGG | + | chr2_2:3961485-3961504 | Msa0231690:intron | 45.0% |
| !! | TGGGAATGAAGGTTGGTGAT+GGG | + | chr2_2:3961486-3961505 | Msa0231690:intron | 45.0% |
| TGCTGATGCTGGAAACACAA+AGG | + | chr2_2:3961523-3961542 | Msa0231690:CDS | 45.0% | |
| ACAAAGGATTCAACTGGCGA+CGG | + | chr2_2:3961539-3961558 | Msa0231690:CDS | 45.0% | |
| GTAAATGGGAATGCTACCGT+TGG | + | chr2_2:3961563-3961582 | Msa0231690:CDS | 45.0% | |
| CTCGGAACATGTACTGTAGT+AGG | - | chr2_2:3961771-3961790 | None:intergenic | 45.0% | |
| CTACTACAGTACATGTTCCG+AGG | + | chr2_2:3961769-3961788 | Msa0231690:CDS | 45.0% | |
| ! | AAGAATGCTGGGTCAGCTTT+TGG | + | chr2_2:3961836-3961855 | Msa0231690:CDS | 45.0% |
| ! | AGAATGCTGGGTCAGCTTTT+GGG | + | chr2_2:3961837-3961856 | Msa0231690:CDS | 45.0% |
| AAGGAAGACAAGCAACTCTC+AGG | + | chr2_2:3962034-3962053 | Msa0231690:CDS | 45.0% | |
| AGAAACACTTAGGTATGCGG+TGG | - | chr2_2:3962536-3962555 | None:intergenic | 45.0% | |
| TGAAAATAAGGGCTCGCAAC+GGG | - | chr2_2:3962652-3962671 | None:intergenic | 45.0% | |
| CTGAAAATAAGGGCTCGCAA+CGG | - | chr2_2:3962653-3962672 | None:intergenic | 45.0% | |
| GCCACTAGGCCTGAAAATAA+GGG | - | chr2_2:3962663-3962682 | None:intergenic | 45.0% | |
| TGCCACTAGGCCTGAAAATA+AGG | - | chr2_2:3962664-3962683 | None:intergenic | 45.0% | |
| TTAGTAAGGGAACTGCCACT+AGG | - | chr2_2:3962677-3962696 | None:intergenic | 45.0% | |
| TGCCCAACCACCTATACAAT+TGG | + | chr2_2:3962734-3962753 | Msa0231690:intron | 45.0% | |
| ATACCCTGAAACTCCTTCCT+AGG | + | chr2_2:3963071-3963090 | Msa0231690:intron | 45.0% | |
| AGATTGCTGAAAAACGGAGG+AGG | + | chr2_2:3963148-3963167 | Msa0231690:CDS | 45.0% | |
| GATTGCTGAAAAACGGAGGA+GGG | + | chr2_2:3963149-3963168 | Msa0231690:CDS | 45.0% | |
| CCTAAGAGTCTGATCAGAGT+TGG | - | chr2_2:3963268-3963287 | None:intergenic | 45.0% | |
| CCAACTCTGATCAGACTCTT+AGG | + | chr2_2:3963265-3963284 | Msa0231690:intron | 45.0% | |
| ! | TGGAGTTACTGTTTCTTCGG+TGG | + | chr2_2:3963322-3963341 | Msa0231690:CDS | 45.0% |
| !! | TCACTAGTTTGTTCCACAGC+TGG | + | chr2_2:3963437-3963456 | Msa0231690:intron | 45.0% |
| CAGTAATAGATGTCCAGCTG+TGG | - | chr2_2:3963453-3963472 | None:intergenic | 45.0% | |
| !! | ATAACCTGCAGAGCATTGCA+TGG | - | chr2_2:3963490-3963509 | None:intergenic | 45.0% |
| CTATTTGCCTAACAAGCCCT+TGG | + | chr2_2:3963724-3963743 | Msa0231690:CDS | 45.0% | |
| ! | TCTTCATCCAAGGGCTTGTT+AGG | - | chr2_2:3963734-3963753 | None:intergenic | 45.0% |
| GACACGTCTTCTTCATCCAA+GGG | - | chr2_2:3963743-3963762 | None:intergenic | 45.0% | |
| TGACACGTCTTCTTCATCCA+AGG | - | chr2_2:3963744-3963763 | None:intergenic | 45.0% | |
| TCTCGACATTGGCAAGATAC+TGG | - | chr2_2:3964045-3964064 | None:intergenic | 45.0% | |
| GTATCTTGCCAATGTCGAGA+AGG | + | chr2_2:3964045-3964064 | Msa0231690:CDS | 45.0% | |
| TGCCAATGTCGAGAAGGATT+TGG | + | chr2_2:3964051-3964070 | Msa0231690:CDS | 45.0% | |
| CTCCAAATCCTTCTCGACAT+TGG | - | chr2_2:3964056-3964075 | None:intergenic | 45.0% | |
| TCGAGAAGGATTTGGAGAGA+TGG | + | chr2_2:3964059-3964078 | Msa0231690:CDS | 45.0% | |
| GGCAGAATGCAAGAAATGCA+AGG | + | chr2_2:3964080-3964099 | Msa0231690:CDS | 45.0% | |
| ACATTATCAGTAGCAGCTGC+AGG | - | chr2_2:3964346-3964365 | None:intergenic | 45.0% | |
| TAATTGATGTGTGTCGTGGC+GGG | - | chr2_2:3964385-3964404 | None:intergenic | 45.0% | |
| CAGAAGCCTAACCATAGCAA+GGG | - | chr2_2:3964440-3964459 | None:intergenic | 45.0% | |
| ACAGAAGCCTAACCATAGCA+AGG | - | chr2_2:3964441-3964460 | None:intergenic | 45.0% | |
| ACTTCTTCGTCAACAACGCG+AGG | + | chr2_2:3960620-3960639 | Msa0231690:CDS | 50.0% | |
| GATCCTCGTGGTCTTCGTAA+AGG | + | chr2_2:3960741-3960760 | Msa0231690:CDS | 50.0% | |
| GAAAGTCTCCGTTTAGCAGG+AGG | - | chr2_2:3960940-3960959 | None:intergenic | 50.0% | |
| ! | GTCAGGAAGGCACATGAGTA+GGG | - | chr2_2:3961412-3961431 | None:intergenic | 50.0% |
| CCCTTTGTGGTTTAAGGGTC+AGG | - | chr2_2:3961429-3961448 | None:intergenic | 50.0% | |
| !! | GGGAATGAAGGTTGGTGATG+GGG | + | chr2_2:3961487-3961506 | Msa0231690:intron | 50.0% |
| TCAACTGGCGACGGTGTAAA+TGG | + | chr2_2:3961548-3961567 | Msa0231690:CDS | 50.0% | |
| CAACTGGCGACGGTGTAAAT+GGG | + | chr2_2:3961549-3961568 | Msa0231690:CDS | 50.0% | |
| CTACCGTTGGTCAGAGTGAT+GGG | + | chr2_2:3961576-3961595 | Msa0231690:CDS | 50.0% | |
| CTTCCCATCACTCTGACCAA+CGG | - | chr2_2:3961582-3961601 | None:intergenic | 50.0% | |
| !! | TCAGCTTTTGGGAACTCTGG+AGG | + | chr2_2:3961848-3961867 | Msa0231690:CDS | 50.0% |
| CAAGCAACTCTCAGGAACAG+AGG | + | chr2_2:3962042-3962061 | Msa0231690:CDS | 50.0% | |
| !!! | CGTTGCGAGCCCTTATTTTC+AGG | + | chr2_2:3962651-3962670 | Msa0231690:intron | 50.0% |
| !!! | GCCCTTATTTTCAGGCCTAG+TGG | + | chr2_2:3962659-3962678 | Msa0231690:intron | 50.0% |
| ! | TCCGAACGGACATGTTTTCG+AGG | + | chr2_2:3962829-3962848 | Msa0231690:intron | 50.0% |
| CCCTCGAAAACATGTCCGTT+CGG | - | chr2_2:3962833-3962852 | None:intergenic | 50.0% | |
| ! | CCGAACGGACATGTTTTCGA+GGG | + | chr2_2:3962830-3962849 | Msa0231690:intron | 50.0% |
| CAGCCTAGGAAGGAGTTTCA+GGG | - | chr2_2:3963077-3963096 | None:intergenic | 50.0% | |
| TCAGCCTAGGAAGGAGTTTC+AGG | - | chr2_2:3963078-3963097 | None:intergenic | 50.0% | |
| GCTCTTTGTTCAGCCTAGGA+AGG | - | chr2_2:3963087-3963106 | None:intergenic | 50.0% | |
| CCTAGGCTGAACAAAGAGCA+CGG | + | chr2_2:3963088-3963107 | Msa0231690:intron | 50.0% | |
| ! | CTAGGCTGAACAAAGAGCAC+GGG | + | chr2_2:3963089-3963108 | Msa0231690:intron | 50.0% |
| GAGCACGGGAAGAAAGTGAA+AGG | + | chr2_2:3963103-3963122 | Msa0231690:CDS | 50.0% | |
| GGGAAGAAAGTGAAAGGCTC+AGG | + | chr2_2:3963109-3963128 | Msa0231690:CDS | 50.0% | |
| TGAAAAACGGAGGAGGGACT+TGG | + | chr2_2:3963155-3963174 | Msa0231690:CDS | 50.0% | |
| CATACCATGCAATGCTCTGC+AGG | + | chr2_2:3963483-3963502 | Msa0231690:intron | 50.0% | |
| GATACTCATAGGCTCGAGCA+TGG | + | chr2_2:3964151-3964170 | Msa0231690:CDS | 50.0% | |
| !! | ATCAATGGGGAGTACTGCGG+CGG | + | chr2_2:3960557-3960576 | Msa0231690:exon | 55.0% |
| GCACCTTTACGAAGACCACG+AGG | - | chr2_2:3960747-3960766 | None:intergenic | 55.0% | |
| ! | GGTCAGGAAGGCACATGAGT+AGG | - | chr2_2:3961413-3961432 | None:intergenic | 55.0% |
| CTGACTGAGGATGCTGATGC+TGG | + | chr2_2:3961512-3961531 | Msa0231690:CDS | 55.0% | |
| GCTACCGTTGGTCAGAGTGA+TGG | + | chr2_2:3961575-3961594 | Msa0231690:CDS | 55.0% | |
| !! | GGGTCAGCTTTTGGGAACTC+TGG | + | chr2_2:3961845-3961864 | Msa0231690:CDS | 55.0% |
| CCGTGCTCTTTGTTCAGCCT+AGG | - | chr2_2:3963091-3963110 | None:intergenic | 55.0% | |
| ! | AAACGGAGGAGGGACTTGGT+AGG | + | chr2_2:3963159-3963178 | Msa0231690:intron | 55.0% |
| TCAGACTCTTAGGGCACGTG+TGG | + | chr2_2:3963275-3963294 | Msa0231690:intron | 55.0% | |
| !! | TCGTGGCGGGCCATTACTTT+AGG | - | chr2_2:3964372-3964391 | None:intergenic | 55.0% |
| GAGAGGCTTCGAGATCCTCG+TGG | + | chr2_2:3960729-3960748 | Msa0231690:CDS | 60.0% | |
| CGTGACGAACAAAGGGACGC+TGG | - | chr2_2:3960806-3960825 | None:intergenic | 60.0% | |
| !! | TGGTGATGGGGAGCTGACTG+AGG | + | chr2_2:3961499-3961518 | Msa0231690:CDS | 60.0% |
| AGCAGCTGCAGGATCTGCAG+TGG | - | chr2_2:3964335-3964354 | None:intergenic | 60.0% | |
| !! | AATGGGGAGTACTGCGGCGG+CGG | + | chr2_2:3960560-3960579 | Msa0231690:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3960486 | 3964663 | 3960486 | ID=Msa0231690;Name=Msa0231690 |
| chr2_2 | mRNA | 3960486 | 3964663 | 3960486 | ID=Msa0231690-mRNA-1;Parent=Msa0231690;Name=Msa0231690-mRNA-1;_AED=0.12;_eAED=0.12;_QI=75|1|1|1|1|1|10|285|424 |
| chr2_2 | exon | 3960486 | 3960641 | 3960486 | ID=Msa0231690-mRNA-1:exon:1611;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3960723 | 3960824 | 3960723 | ID=Msa0231690-mRNA-1:exon:1612;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3960907 | 3960975 | 3960907 | ID=Msa0231690-mRNA-1:exon:1613;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3961497 | 3961661 | 3961497 | ID=Msa0231690-mRNA-1:exon:1614;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3961756 | 3961869 | 3961756 | ID=Msa0231690-mRNA-1:exon:1615;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3962025 | 3962096 | 3962025 | ID=Msa0231690-mRNA-1:exon:1616;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3963093 | 3963176 | 3963093 | ID=Msa0231690-mRNA-1:exon:1617;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3963279 | 3963379 | 3963279 | ID=Msa0231690-mRNA-1:exon:1618;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3963700 | 3963784 | 3963700 | ID=Msa0231690-mRNA-1:exon:1619;Parent=Msa0231690-mRNA-1 |
| chr2_2 | exon | 3963977 | 3964663 | 3963977 | ID=Msa0231690-mRNA-1:exon:1620;Parent=Msa0231690-mRNA-1 |
| chr2_2 | five_prime_UTR | 3960486 | 3960560 | 3960486 | ID=Msa0231690-mRNA-1:five_prime_utr;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3960561 | 3960641 | 3960561 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3960723 | 3960824 | 3960723 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3960907 | 3960975 | 3960907 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3961497 | 3961661 | 3961497 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3961756 | 3961869 | 3961756 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3962025 | 3962096 | 3962025 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3963093 | 3963176 | 3963093 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3963279 | 3963379 | 3963279 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3963700 | 3963784 | 3963700 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | CDS | 3963977 | 3964378 | 3963977 | ID=Msa0231690-mRNA-1:cds;Parent=Msa0231690-mRNA-1 |
| chr2_2 | three_prime_UTR | 3964379 | 3964663 | 3964379 | ID=Msa0231690-mRNA-1:three_prime_utr;Parent=Msa0231690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
