AlfalfaGEDB | Msa1389510

M. sativa cultivar zhongmu-4 / Msa1389510

KEGG: K10884
GO: GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363
PFAM: PF02735.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389510	XP_003592861.2	89.347	291	22	2	1	285	347	634	2.43e-180	521

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389510	sp\|Q7F1M0\|KU70_ORYSJ	60.481	291	103	4	2	285	339	624	1.05e-109	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389510	G7ICA9	89.347	291	22	2	1	285	347	634	1.16e-180	521

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004860	Msa1389510	0.823402	1.412099e-53	-8.615850e-47
Msa0008090	Msa1389510	0.809445	1.885237e-50	-8.615850e-47
Msa0009430	Msa1389510	0.811994	5.298678e-51	-8.615850e-47
Msa0032260	Msa1389510	0.816318	5.884015e-52	-8.615850e-47
Msa0033110	Msa1389510	0.822325	2.516847e-53	-8.615850e-47
Msa0033260	Msa1389510	0.823464	1.365523e-53	-8.615850e-47
Msa0037250	Msa1389510	0.823493	1.344390e-53	-8.615850e-47
Msa0040690	Msa1389510	0.812487	4.136239e-51	-8.615850e-47
Msa0047160	Msa1389510	0.805641	1.210308e-49	-8.615850e-47
Msa0048180	Msa1389510	0.807299	5.408703e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389510	MtrunA17_Chr1g0213891	89.347	291	22	2	1	285	347	634	0.0	521

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1389510	AT1G16970.1	57.732	291	107	4	1	285	341	621	1.09e-108	328

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Find 85 sgRNAs with CRISPR-Local

Find 1214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAACAGTAACCTCGTCAC+TGG	0.554360	tig0021283:+120939	None:intergenic
AAGAGTGTGAGAACTATGAT+TGG	0.546419	tig0021283:-114074	Msa1389510:CDS
AATCACCTGCAGACCAGGAG+TGG	0.644588	tig0021283:-114223	Msa1389510:intron
AATCTACAAGACAAACAGCA+GGG	0.690328	tig0021283:-113617	Msa1389510:three_prime_UTR
AATGTTTCATCTTTGATTTC+AGG	0.249243	tig0021283:+114725	None:intergenic
AATTCAAGTCCTCTGTATAC+GGG	0.498771	tig0021283:-114185	Msa1389510:CDS
ACTGGATAAAGGAAAGTTGA+TGG	0.512111	tig0021283:+120957	None:intergenic
AGAGTGTGAGAACTATGATT+GGG	0.515732	tig0021283:-114073	Msa1389510:CDS
AGATAAATCATGTGCATTCC+AGG	0.390123	tig0021283:+119331	None:intergenic
AGATGAAACATTACCTGATG+AGG	0.570932	tig0021283:-114714	Msa1389510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAATGGAACTTTAAATTGA+GGG	+	tig0021283:113953-113972	None:intergenic	30.0%
TGGAATGGAACTTTAAATTG+AGG	+	tig0021283:113954-113973	None:intergenic	30.0%
TCAACAAGTGATCTATCTAT+TGG	-	tig0021283:114046-114065	Msa1389510:intron	30.0%
TGATAAAAATATGCAGGCAA+AGG	-	tig0021283:114394-114413	Msa1389510:intron	30.0%
ACATAAACAAACGATCTTAC+AGG	+	tig0021283:114568-114587	None:intergenic	30.0%
AGTATTGTAGTTTCGTGATT+AGG	-	tig0021283:114824-114843	Msa1389510:intron	30.0%
CAAAACTAAAAGGAACACAA+GGG	+	tig0021283:114911-114930	None:intergenic	30.0%
AATGCAACTGCAAAACTAAA+AGG	+	tig0021283:114921-114940	None:intergenic	30.0%
AGTCTAATGTCATCAGAATA+CGG	+	tig0021283:115205-115224	None:intergenic	30.0%
ATACCTCATCAAATGAGATA+TGG	-	tig0021283:115791-115810	Msa1389510:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0021283	gene	113434	121097	113434	ID=Msa1389510;Name=Msa1389510
tig0021283	mRNA	113434	121097	113434	ID=Msa1389510-mRNA-1;Parent=Msa1389510;Name=Msa1389510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=19\|0.71\|0.75\|0.87\|0.85\|0.87\|8\|312\|285
tig0021283	exon	113434	113859	113434	ID=Msa1389510-mRNA-1:exon:11648;Parent=Msa1389510-mRNA-1
tig0021283	exon	114050	114233	114050	ID=Msa1389510-mRNA-1:exon:11647;Parent=Msa1389510-mRNA-1
tig0021283	exon	114701	114803	114701	ID=Msa1389510-mRNA-1:exon:11646;Parent=Msa1389510-mRNA-1
tig0021283	exon	119062	119182	119062	ID=Msa1389510-mRNA-1:exon:11645;Parent=Msa1389510-mRNA-1
tig0021283	exon	119297	119389	119297	ID=Msa1389510-mRNA-1:exon:11644;Parent=Msa1389510-mRNA-1
tig0021283	exon	119545	119597	119545	ID=Msa1389510-mRNA-1:exon:11643;Parent=Msa1389510-mRNA-1
tig0021283	exon	120286	120347	120286	ID=Msa1389510-mRNA-1:exon:11642;Parent=Msa1389510-mRNA-1
tig0021283	exon	120951	121097	120951	ID=Msa1389510-mRNA-1:exon:11641;Parent=Msa1389510-mRNA-1
tig0021283	five_prime_UTR	121079	121097	121079	ID=Msa1389510-mRNA-1:five_prime_utr;Parent=Msa1389510-mRNA-1
tig0021283	CDS	120951	121078	120951	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	120286	120347	120286	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	119545	119597	119545	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	119297	119389	119297	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	119062	119182	119062	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	114701	114803	114701	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	114050	114233	114050	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	CDS	113746	113859	113746	ID=Msa1389510-mRNA-1:cds;Parent=Msa1389510-mRNA-1
tig0021283	three_prime_UTR	113434	113745	113434	ID=Msa1389510-mRNA-1:three_prime_utr;Parent=Msa1389510-mRNA-1

Gene Sequence

>Msa1389510

ATGAAGGAGCTATCTGAAATTAAGAGAGTTGCTACCGGACATCTACATCTTTTAGGGTTCAAGCCACTAAGCTGCTTGAGAGATTATTACAACTTGAAGCCATCAACTTTCCTTTATCCAGTGACGAGGGTACAGATGCTAGCATGTGCACCTTCATTGCCCTTCATAGGTCCATGGTACAGCTCAACCGTTGCATTTAGTGGTAGTTCATCTCGACCTCAATTGGTCGCCCTTATTGCGCAGGATGAGGTTATCCAATCTGGTGGTCAGATTGAGCCGCCTGGAATGCACATGATTTATCTTCCGTATTCTGATGACATTAGACTTGTTGAAGAGCGTTATTCAGATACCAGTGGGGTGGTGACTAAAGCAAGTGATGATCAAATAAAAAGGGCAGCTGATTTAATCAAGCGTTTGGACTTGAAAGATTTTTCTGTATTCCAAATCACCAACCCTGCCTTGCAGAGACACTATGCAGTATTGCAGGCATTAGCTCTGGAAGAGGATGATATTCCTGAAATCAAAGATGAAACATTACCTGATGAGGAAGGCTTGTCCAGACCAGGAGTGGTCAGGGCATTAGAAGAATTCAAGTCCTCTGTATACGGGGAGAATTATGATGAGGAAAGTGAGCTTGGCACTGGAAAGCCAACTGAAGCCTCCAAGAAACGAAAAGCGCATGCTGAGTTTGCTATGAAAGAGTGTGAGAACTATGATTGGGGTGAGCTCGCTGATACTGGAAAGTTGAAGGATTTGACAGTGGTGGAGTTGAAATATTATCTTACAGGACACAATCTTCCTGTTTCTGGGAAGAAGGAAGCTTTAGTTAGCCGAATATTAACTCATATGGGAAAATGA

Protein sequence

>Msa1389510

MKELSEIKRVATGHLHLLGFKPLSCLRDYYNLKPSTFLYPVTRVQMLACAPSLPFIGPWYSSTVAFSGSSSRPQLVALIAQDEVIQSGGQIEPPGMHMIYLPYSDDIRLVEERYSDTSGVVTKASDDQIKRAADLIKRLDLKDFSVFQITNPALQRHYAVLQALALEEDDIPEIKDETLPDEEGLSRPGVVRALEEFKSSVYGENYDEESELGTGKPTEASKKRKAHAEFAMKECENYDWGELADTGKLKDLTVVELKYYLTGHNLPVSGKKEALVSRILTHMGK*