AlfalfaGEDB | Msa1275050

M. sativa cultivar zhongmu-4 / Msa1275050

KEGG: K15280
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005793 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0090481 GO:0098656 GO:1901264
PFAM: PF03151.19

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275050	KEH18328.1	98.101	158	3	0	4	161	298	455	1.37e-104	317

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275050	sp\|Q8H184\|PT106_ARATH	67.702	161	49	1	2	159	252	412	1.06e-68	216

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275050	A0A072TNB7	98.101	158	3	0	4	161	298	455	6.56e-105	317

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0072420	Msa1275050	0.818029	2.426257e-52	-8.615850e-47
Msa0620460	Msa1275050	0.808355	3.226358e-50	-8.615850e-47
Msa0711450	Msa1275050	0.817129	3.869357e-52	-8.615850e-47
Msa0741440	Msa1275050	0.861077	1.321735e-63	-8.615850e-47
Msa0822500	Msa1275050	0.819631	1.049610e-52	-8.615850e-47
Msa0831110	Msa1275050	0.809807	1.576524e-50	-8.615850e-47
Msa0148080	Msa1275050	0.839910	1.193989e-57	-8.615850e-47
Msa0189320	Msa1275050	0.847214	1.332277e-59	-8.615850e-47
Msa0231690	Msa1275050	0.808531	2.958630e-50	-8.615850e-47
Msa1232700	Msa1275050	0.857661	1.401814e-62	-8.615850e-47
Msa1275050	Msa1307560	0.814197	1.741296e-51	-8.615850e-47
Msa1275050	Msa1346840	0.839860	1.230624e-57	-8.615850e-47
Msa1275050	Msa1353980	0.810092	1.369069e-50	-8.615850e-47
Msa1275050	Msa1358500	0.817085	3.958644e-52	-8.615850e-47
Msa1275050	Msa1393570	0.803795	2.938735e-49	-8.615850e-47
Msa1275050	Msa1394380	0.806016	1.009319e-49	-8.615850e-47
Msa1275050	Msa1401990	0.802769	4.793946e-49	-8.615850e-47
Msa1275050	Msa1419690	0.845878	3.085803e-59	-8.615850e-47
Msa1275050	Msa1440310	0.801963	7.026089e-49	-8.615850e-47
Msa1275050	Msa1448560	0.811822	5.776366e-51	-8.615850e-47
Msa1275050	Msa1449340	-0.803199	3.907700e-49	-8.615850e-47
Msa1275050	Msa1463900	0.819530	1.106679e-52	-8.615850e-47
Msa1275050	Msa1464810	0.808063	3.723673e-50	-8.615850e-47
Msa0398670	Msa1275050	0.807450	5.023975e-50	-8.615850e-47
Msa0479170	Msa1275050	0.802773	4.785343e-49	-8.615850e-47
Msa1075990	Msa1275050	0.832211	1.075664e-55	-8.615850e-47
Msa1080640	Msa1275050	0.803710	3.061550e-49	-8.615850e-47
Msa0240920	Msa1275050	0.820678	6.040752e-53	-8.615850e-47
Msa0257520	Msa1275050	0.828532	8.534448e-55	-8.615850e-47
Msa0266350	Msa1275050	0.812637	3.835613e-51	-8.615850e-47
Msa0271510	Msa1275050	0.825364	4.881209e-54	-8.615850e-47
Msa0309770	Msa1275050	0.801914	7.191273e-49	-8.615850e-47
Msa0318680	Msa1275050	0.846307	2.357822e-59	-8.615850e-47
Msa1173340	Msa1275050	0.907623	4.150267e-81	-8.615850e-47
Msa1179630	Msa1275050	0.899311	2.246088e-77	-8.615850e-47
Msa0567350	Msa1275050	0.802129	6.494335e-49	-8.615850e-47
Msa0865030	Msa1275050	0.811986	5.321026e-51	-8.615850e-47
Msa0878220	Msa1275050	0.801651	8.141615e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275050	MtrunA17_Chr8g0341861	98.101	158	3	0	4	161	348	505	8.11e-108	316

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1275050	AT1G06470.4	67.702	161	49	1	2	159	252	412	1.08e-69	216
Msa1275050	AT1G06470.2	67.702	161	49	1	2	159	252	412	1.08e-69	216
Msa1275050	AT1G06470.1	67.702	161	49	1	2	159	252	412	1.08e-69	216
Msa1275050	AT1G06470.3	67.702	161	49	1	2	159	252	412	1.08e-69	216

Find 55 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTTGGCCTATTCACTATTA+TGG	0.187662	8_3:+8896307	Msa1275050:CDS
GATTATTCAGTTACAGATTT+TGG	0.191219	8_3:+8897145	Msa1275050:three_prime_UTR
ACTTTGGATATGAAATTATT+TGG	0.222214	8_3:-8896605	None:intergenic
CTCCTCAAGAATAACATATT+TGG	0.237086	8_3:-8896542	None:intergenic
AGTTTCTTGCTGATGTTCTT+TGG	0.296937	8_3:+8895831	Msa1275050:CDS
TTTACTTGGTTGAAAGGATT+TGG	0.305186	8_3:+8896290	Msa1275050:CDS
TTTCTCTTGCATTAGATCCT+TGG	0.319284	8_3:+8895757	Msa1275050:CDS
ATGAGTACTTTGATAGTTCA+TGG	0.322932	8_3:+8895796	Msa1275050:CDS
TTCTCTTGCATTAGATCCTT+GGG	0.329763	8_3:+8895758	Msa1275050:CDS
TATATGTTGTAGATCATAAT+AGG	0.345789	8_3:+8897189	Msa1275050:three_prime_UTR
GCGGTTGCCACAGCCATTAC+TGG	0.348920	8_3:-8895729	None:intergenic
GAGCATTGGCGTTGATGATA+TGG	0.349849	8_3:-8897099	None:intergenic
TTTCTTACCAATACAGTGAT+TGG	0.360244	8_3:+8897302	Msa1275050:three_prime_UTR
TGAAATTATTTGGTCCATAT+AGG	0.374264	8_3:-8896595	None:intergenic
TGTCACCTGCATGAAGCTTC+TGG	0.376676	8_3:-8896486	None:intergenic
AAAGTTAATTGATACCAATA+TGG	0.397508	8_3:-8896095	None:intergenic
TTTGAGAATGTAAGGGGAGG+GGG	0.400516	8_3:-8897437	None:intergenic
GGATACAATACAAGTTTGTT+TGG	0.401116	8_3:-8897409	None:intergenic
GTGGCATCTGAAAACCTATA+TGG	0.411109	8_3:+8896581	Msa1275050:exon
CACAATAGCAGGGGTTGTTA+AGG	0.412687	8_3:+8896063	Msa1275050:CDS
ACAAGTTTGTTTGGTGTTGA+AGG	0.413238	8_3:-8897400	None:intergenic
GGCCTATTCACTATTATGGT+TGG	0.420950	8_3:+8896311	Msa1275050:CDS
TTCTTGCTGATGTTCTTTGG+TGG	0.442105	8_3:+8895834	Msa1275050:CDS
TAAGGAGGCCGTCACCATAT+TGG	0.448702	8_3:+8896081	Msa1275050:CDS
ACCAATACAGTGATTGGTAA+TGG	0.453845	8_3:+8897308	Msa1275050:three_prime_UTR
ACTTTCATGATGCGTTTACT+TGG	0.454790	8_3:+8896276	Msa1275050:CDS
GCCGTCACAGTCACAATAGC+AGG	0.457610	8_3:+8896052	Msa1275050:CDS
GATGCGTTTACTTGGTTGAA+AGG	0.473291	8_3:+8896284	Msa1275050:CDS
CACCAACCATAATAGTGAAT+AGG	0.480731	8_3:-8896313	None:intergenic
AATGCATCTAAAATATTAAG+TGG	0.484373	8_3:-8897274	None:intergenic
GGTCAATTTCGTTGTTACAT+TGG	0.486992	8_3:+8897370	Msa1275050:three_prime_UTR
ACCATTACCAATCACTGTAT+TGG	0.491682	8_3:-8897309	None:intergenic
AGATCATCATACAAAAGATT+CGG	0.504216	8_3:+8896516	Msa1275050:CDS
ATATGTTATTCTTGAGGAGA+TGG	0.508928	8_3:+8896546	Msa1275050:CDS
ACATAGCTCATCAAGGTAAG+TGG	0.518542	8_3:-8895702	None:intergenic
ATATGGCTAAGGCAAGTCCC+TGG	0.544792	8_3:-8897082	None:intergenic
AGCCAAATATGTTATTCTTG+AGG	0.551577	8_3:+8896540	Msa1275050:CDS
AAGCAATGATTTCGAAGAAG+AGG	0.568201	8_3:+8897043	Msa1275050:three_prime_UTR
AATAGCAGGGGTTGTTAAGG+AGG	0.572240	8_3:+8896066	Msa1275050:CDS
TGGCGTTGATGATATGGCTA+AGG	0.583630	8_3:-8897093	None:intergenic
AGATACCAGAAGCTTCATGC+AGG	0.583657	8_3:+8896481	Msa1275050:intron
TGGAGCTACATAGCTCATCA+AGG	0.595512	8_3:-8895709	None:intergenic
AGCAATGATTTCGAAGAAGA+GGG	0.603074	8_3:+8897044	Msa1275050:three_prime_UTR
CCGTCACAGTCACAATAGCA+GGG	0.608410	8_3:+8896053	Msa1275050:CDS
AATTGATACCAATATGGTGA+CGG	0.618158	8_3:-8896089	None:intergenic
TGTAGCTCCAGTAATGGCTG+TGG	0.626348	8_3:+8895722	Msa1275050:CDS
GACAGAATAGAAGAGAGCAT+TGG	0.631652	8_3:-8897113	None:intergenic
GAGCTATGTAGCTCCAGTAA+TGG	0.650395	8_3:+8895716	Msa1275050:CDS
TACAAGTAGAAGATAAACAC+AGG	0.656230	8_3:-8895619	None:intergenic
CCCTGCTATTGTGACTGTGA+CGG	0.667298	8_3:-8896053	None:intergenic
CGTCACAGTCACAATAGCAG+GGG	0.682759	8_3:+8896054	Msa1275050:CDS
GCTTCATGCAGGTGACAATG+TGG	0.684466	8_3:+8896492	Msa1275050:CDS
GAGGAGATGGATGAACAAGA+TGG	0.689009	8_3:+8896559	Msa1275050:CDS
GAGATGGATGAACAAGATGG+TGG	0.719797	8_3:+8896562	Msa1275050:CDS
TAATGCAAGAGAAAGAAGTG+CGG	0.763184	8_3:-8895748	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATATTTTATATATTCATTTG+TGG	+	chr8_3:8896672-8896691	Msa1275050:intron	10.0%
!!!	AAATATTTTAATACAATACT+AGG	-	chr8_3:8897248-8897267	None:intergenic	10.0%
!!	AGAAAAATAAATAAAATTTG+GGG	-	chr8_3:8897467-8897486	None:intergenic	10.0%
!!	CAGAAAAATAAATAAAATTT+GGG	-	chr8_3:8897468-8897487	None:intergenic	10.0%
!!!	ATATTTTATATATTCATTTG+TGG	+	chr8_3:8896672-8896691	Msa1275050:intron	10.0%
!!!	AAATATTTTAATACAATACT+AGG	-	chr8_3:8897248-8897267	None:intergenic	10.0%
!!	AGAAAAATAAATAAAATTTG+GGG	-	chr8_3:8897467-8897486	None:intergenic	10.0%
!!	CAGAAAAATAAATAAAATTT+GGG	-	chr8_3:8897468-8897487	None:intergenic	10.0%
!!!	TCTACATTTTTTTATATGAT+TGG	+	chr8_3:8896125-8896144	Msa1275050:intron	15.0%
!!	TAAAATCATATTAATGATGA+AGG	+	chr8_3:8896718-8896737	Msa1275050:intron	15.0%
!!!	TCTACATTTTTTTATATGAT+TGG	+	chr8_3:8896125-8896144	Msa1275050:intron	15.0%
!!	TAAAATCATATTAATGATGA+AGG	+	chr8_3:8896718-8896737	Msa1275050:intron	15.0%
!!	AGTCAAATATATATATCAGA+GGG	-	chr8_3:8895894-8895913	None:intergenic	20.0%
!!	AAGTCAAATATATATATCAG+AGG	-	chr8_3:8895895-8895914	None:intergenic	20.0%
!!	AAAGTTAATTGATACCAATA+TGG	-	chr8_3:8896098-8896117	None:intergenic	20.0%
!!	ACTTTGGATATGAAATTATT+TGG	-	chr8_3:8896608-8896627	None:intergenic	20.0%
!!	ATTTAACTGTATCAAAGAAA+AGG	-	chr8_3:8896634-8896653	None:intergenic	20.0%
!!!	TTTTCTTTGATACAGTTAAA+TGG	+	chr8_3:8896633-8896652	Msa1275050:intron	20.0%
!!!	ATTATTTGAGACATGAATAT+TGG	+	chr8_3:8896886-8896905	Msa1275050:intron	20.0%
!!	TATATGTTGTAGATCATAAT+AGG	+	chr8_3:8897189-8897208	Msa1275050:three_prime_UTR	20.0%
!!!	AATGCATCTAAAATATTAAG+TGG	-	chr8_3:8897277-8897296	None:intergenic	20.0%
!!!	TTACTCAACAACTATATTTT+TGG	+	chr8_3:8897331-8897350	Msa1275050:three_prime_UTR	20.0%
!!!	TACTCAACAACTATATTTTT+GGG	+	chr8_3:8897332-8897351	Msa1275050:three_prime_UTR	20.0%
!!	AGTCAAATATATATATCAGA+GGG	-	chr8_3:8895894-8895913	None:intergenic	20.0%
!!	AAGTCAAATATATATATCAG+AGG	-	chr8_3:8895895-8895914	None:intergenic	20.0%
!!	AAAGTTAATTGATACCAATA+TGG	-	chr8_3:8896098-8896117	None:intergenic	20.0%
!!	ACTTTGGATATGAAATTATT+TGG	-	chr8_3:8896608-8896627	None:intergenic	20.0%
!!	ATTTAACTGTATCAAAGAAA+AGG	-	chr8_3:8896634-8896653	None:intergenic	20.0%
!!!	TTTTCTTTGATACAGTTAAA+TGG	+	chr8_3:8896633-8896652	Msa1275050:intron	20.0%
!!!	ATTATTTGAGACATGAATAT+TGG	+	chr8_3:8896886-8896905	Msa1275050:intron	20.0%
!!	TATATGTTGTAGATCATAAT+AGG	+	chr8_3:8897189-8897208	Msa1275050:three_prime_UTR	20.0%
!!!	AATGCATCTAAAATATTAAG+TGG	-	chr8_3:8897277-8897296	None:intergenic	20.0%
!!!	TTACTCAACAACTATATTTT+TGG	+	chr8_3:8897331-8897350	Msa1275050:three_prime_UTR	20.0%
!!!	TACTCAACAACTATATTTTT+GGG	+	chr8_3:8897332-8897351	Msa1275050:three_prime_UTR	20.0%
!!!	TATCAAAGTACTCATTTTCT+CGG	-	chr8_3:8895791-8895810	None:intergenic	25.0%
!	ATAAACTCCTACCATAAAAA+AGG	-	chr8_3:8895868-8895887	None:intergenic	25.0%
!!!	ACCTTATTTTGTTGTGTTTA+CGG	+	chr8_3:8895933-8895952	Msa1275050:intron	25.0%
!	TTATATCTTTATCTTCTTGC+AGG	+	chr8_3:8895994-8896013	Msa1275050:intron	25.0%
!	AGATCATCATACAAAAGATT+CGG	+	chr8_3:8896516-8896535	Msa1275050:CDS	25.0%
!	TGAAATTATTTGGTCCATAT+AGG	-	chr8_3:8896598-8896617	None:intergenic	25.0%
!	AATCATATTAATGATGAAGG+CGG	+	chr8_3:8896721-8896740	Msa1275050:intron	25.0%
!!!	TACCTTTTTTACAATTAGCA+AGG	+	chr8_3:8896771-8896790	Msa1275050:intron	25.0%
!!!	ACCTTTTTTACAATTAGCAA+GGG	+	chr8_3:8896772-8896791	Msa1275050:intron	25.0%
!	AATAATGAACTGATGTTACA+TGG	-	chr8_3:8896816-8896835	None:intergenic	25.0%
!	TGAATTGATGTTACATTACA+TGG	-	chr8_3:8896867-8896886	None:intergenic	25.0%
!!	AGTTTATTGACTGAGAATTA+TGG	-	chr8_3:8896967-8896986	None:intergenic	25.0%
!!	GATTATTCAGTTACAGATTT+TGG	+	chr8_3:8897145-8897164	Msa1275050:three_prime_UTR	25.0%
!!!	ACTCAACAACTATATTTTTG+GGG	+	chr8_3:8897333-8897352	Msa1275050:three_prime_UTR	25.0%
!!!	TATTTTTGGGGAAAAAATGT+TGG	+	chr8_3:8897345-8897364	Msa1275050:three_prime_UTR	25.0%
!!!	TATCAAAGTACTCATTTTCT+CGG	-	chr8_3:8895791-8895810	None:intergenic	25.0%
!	ATAAACTCCTACCATAAAAA+AGG	-	chr8_3:8895868-8895887	None:intergenic	25.0%
!!!	ACCTTATTTTGTTGTGTTTA+CGG	+	chr8_3:8895933-8895952	Msa1275050:intron	25.0%
!	TTATATCTTTATCTTCTTGC+AGG	+	chr8_3:8895994-8896013	Msa1275050:intron	25.0%
!	AGATCATCATACAAAAGATT+CGG	+	chr8_3:8896516-8896535	Msa1275050:CDS	25.0%
!	TGAAATTATTTGGTCCATAT+AGG	-	chr8_3:8896598-8896617	None:intergenic	25.0%
!	AATCATATTAATGATGAAGG+CGG	+	chr8_3:8896721-8896740	Msa1275050:intron	25.0%
!!!	TACCTTTTTTACAATTAGCA+AGG	+	chr8_3:8896771-8896790	Msa1275050:intron	25.0%
!!!	ACCTTTTTTACAATTAGCAA+GGG	+	chr8_3:8896772-8896791	Msa1275050:intron	25.0%
!	AATAATGAACTGATGTTACA+TGG	-	chr8_3:8896816-8896835	None:intergenic	25.0%
!	TGAATTGATGTTACATTACA+TGG	-	chr8_3:8896867-8896886	None:intergenic	25.0%
!!	AGTTTATTGACTGAGAATTA+TGG	-	chr8_3:8896967-8896986	None:intergenic	25.0%
!!	GATTATTCAGTTACAGATTT+TGG	+	chr8_3:8897145-8897164	Msa1275050:three_prime_UTR	25.0%
!!!	ACTCAACAACTATATTTTTG+GGG	+	chr8_3:8897333-8897352	Msa1275050:three_prime_UTR	25.0%
!!!	TATTTTTGGGGAAAAAATGT+TGG	+	chr8_3:8897345-8897364	Msa1275050:three_prime_UTR	25.0%
	TACAAGTAGAAGATAAACAC+AGG	-	chr8_3:8895622-8895641	None:intergenic	30.0%
!!!	ATACTTTTTCCAATGACTTC+AGG	+	chr8_3:8895669-8895688	Msa1275050:exon	30.0%
!	ATGAGTACTTTGATAGTTCA+TGG	+	chr8_3:8895796-8895815	Msa1275050:CDS	30.0%
	ACCGTAAACACAACAAAATA+AGG	-	chr8_3:8895937-8895956	None:intergenic	30.0%
	AATTGATACCAATATGGTGA+CGG	-	chr8_3:8896092-8896111	None:intergenic	30.0%
!!	TTTTTATATGATTGGTCCAG+TGG	+	chr8_3:8896133-8896152	Msa1275050:intron	30.0%
!	TAAAGCACTATACGAGTAAT+AGG	-	chr8_3:8896163-8896182	None:intergenic	30.0%
	AATAATCTAGATTCATGCTC+AGG	+	chr8_3:8896188-8896207	Msa1275050:intron	30.0%
	CCAGAACATTAAGTTCAATA+TGG	-	chr8_3:8896222-8896241	None:intergenic	30.0%
	CCATATTGAACTTAATGTTC+TGG	+	chr8_3:8896219-8896238	Msa1275050:intron	30.0%
	TTTACTTGGTTGAAAGGATT+TGG	+	chr8_3:8896290-8896309	Msa1275050:CDS	30.0%
	ATTTGGCCTATTCACTATTA+TGG	+	chr8_3:8896307-8896326	Msa1275050:CDS	30.0%
	AACCTGTTCACTTAAATGTT+TGG	+	chr8_3:8896451-8896470	Msa1275050:intron	30.0%
	AACCAAACATTTAAGTGAAC+AGG	-	chr8_3:8896456-8896475	None:intergenic	30.0%
	AGCCAAATATGTTATTCTTG+AGG	+	chr8_3:8896540-8896559	Msa1275050:CDS	30.0%
	CTCCTCAAGAATAACATATT+TGG	-	chr8_3:8896545-8896564	None:intergenic	30.0%
	ATATGTTATTCTTGAGGAGA+TGG	+	chr8_3:8896546-8896565	Msa1275050:CDS	30.0%
	ATCAAAGAAAAGGCTTACTT+TGG	-	chr8_3:8896624-8896643	None:intergenic	30.0%
	ATCATATTAATGATGAAGGC+GGG	+	chr8_3:8896722-8896741	Msa1275050:intron	30.0%
	TCCCTTGCTAATTGTAAAAA+AGG	-	chr8_3:8896776-8896795	None:intergenic	30.0%
	ATCAGTTCATTATTTGAGCA+AGG	+	chr8_3:8896822-8896841	Msa1275050:intron	30.0%
	TCAGTTCATTATTTGAGCAA+GGG	+	chr8_3:8896823-8896842	Msa1275050:intron	30.0%
	TTTCTTACCAATACAGTGAT+TGG	+	chr8_3:8897302-8897321	Msa1275050:three_prime_UTR	30.0%
!	GGATACAATACAAGTTTGTT+TGG	-	chr8_3:8897412-8897431	None:intergenic	30.0%
	TACAAGTAGAAGATAAACAC+AGG	-	chr8_3:8895622-8895641	None:intergenic	30.0%
!!!	ATACTTTTTCCAATGACTTC+AGG	+	chr8_3:8895669-8895688	Msa1275050:exon	30.0%
!	ATGAGTACTTTGATAGTTCA+TGG	+	chr8_3:8895796-8895815	Msa1275050:CDS	30.0%
	ACCGTAAACACAACAAAATA+AGG	-	chr8_3:8895937-8895956	None:intergenic	30.0%
	AATTGATACCAATATGGTGA+CGG	-	chr8_3:8896092-8896111	None:intergenic	30.0%
!!	TTTTTATATGATTGGTCCAG+TGG	+	chr8_3:8896133-8896152	Msa1275050:intron	30.0%
!	TAAAGCACTATACGAGTAAT+AGG	-	chr8_3:8896163-8896182	None:intergenic	30.0%
	AATAATCTAGATTCATGCTC+AGG	+	chr8_3:8896188-8896207	Msa1275050:intron	30.0%
	CCAGAACATTAAGTTCAATA+TGG	-	chr8_3:8896222-8896241	None:intergenic	30.0%
	CCATATTGAACTTAATGTTC+TGG	+	chr8_3:8896219-8896238	Msa1275050:intron	30.0%
	TTTACTTGGTTGAAAGGATT+TGG	+	chr8_3:8896290-8896309	Msa1275050:CDS	30.0%
	ATTTGGCCTATTCACTATTA+TGG	+	chr8_3:8896307-8896326	Msa1275050:CDS	30.0%
	AACCTGTTCACTTAAATGTT+TGG	+	chr8_3:8896451-8896470	Msa1275050:intron	30.0%
	AACCAAACATTTAAGTGAAC+AGG	-	chr8_3:8896456-8896475	None:intergenic	30.0%
	AGCCAAATATGTTATTCTTG+AGG	+	chr8_3:8896540-8896559	Msa1275050:CDS	30.0%
	CTCCTCAAGAATAACATATT+TGG	-	chr8_3:8896545-8896564	None:intergenic	30.0%
	ATATGTTATTCTTGAGGAGA+TGG	+	chr8_3:8896546-8896565	Msa1275050:CDS	30.0%
	ATCAAAGAAAAGGCTTACTT+TGG	-	chr8_3:8896624-8896643	None:intergenic	30.0%
	ATCATATTAATGATGAAGGC+GGG	+	chr8_3:8896722-8896741	Msa1275050:intron	30.0%
	TCCCTTGCTAATTGTAAAAA+AGG	-	chr8_3:8896776-8896795	None:intergenic	30.0%
	ATCAGTTCATTATTTGAGCA+AGG	+	chr8_3:8896822-8896841	Msa1275050:intron	30.0%
	TCAGTTCATTATTTGAGCAA+GGG	+	chr8_3:8896823-8896842	Msa1275050:intron	30.0%
	TTTCTTACCAATACAGTGAT+TGG	+	chr8_3:8897302-8897321	Msa1275050:three_prime_UTR	30.0%
!	GGATACAATACAAGTTTGTT+TGG	-	chr8_3:8897412-8897431	None:intergenic	30.0%
!!	TTTTTCAGACCTGAAGTCAT+TGG	-	chr8_3:8895681-8895700	None:intergenic	35.0%
	TAATGCAAGAGAAAGAAGTG+CGG	-	chr8_3:8895751-8895770	None:intergenic	35.0%
	TTTCTCTTGCATTAGATCCT+TGG	+	chr8_3:8895757-8895776	Msa1275050:CDS	35.0%
	TTCTCTTGCATTAGATCCTT+GGG	+	chr8_3:8895758-8895777	Msa1275050:CDS	35.0%
	AGTTTCTTGCTGATGTTCTT+TGG	+	chr8_3:8895831-8895850	Msa1275050:CDS	35.0%
!!!	TGGAACACTTGCCTTTTTTA+TGG	+	chr8_3:8895854-8895873	Msa1275050:CDS	35.0%
!!!	ACACTTGCCTTTTTTATGGT+AGG	+	chr8_3:8895858-8895877	Msa1275050:intron	35.0%
	ACTTTCATGATGCGTTTACT+TGG	+	chr8_3:8896276-8896295	Msa1275050:CDS	35.0%
	CACCAACCATAATAGTGAAT+AGG	-	chr8_3:8896316-8896335	None:intergenic	35.0%
	CTTCAATATTCACGTGATTC+AGG	-	chr8_3:8897019-8897038	None:intergenic	35.0%
	CTGAATCACGTGAATATTGA+AGG	+	chr8_3:8897017-8897036	Msa1275050:intron	35.0%
	AAGCAATGATTTCGAAGAAG+AGG	+	chr8_3:8897043-8897062	Msa1275050:three_prime_UTR	35.0%
	AGCAATGATTTCGAAGAAGA+GGG	+	chr8_3:8897044-8897063	Msa1275050:three_prime_UTR	35.0%
	GGACACAAAAATATCTTCCA+GGG	+	chr8_3:8897065-8897084	Msa1275050:three_prime_UTR	35.0%
	ACCAATACAGTGATTGGTAA+TGG	+	chr8_3:8897308-8897327	Msa1275050:three_prime_UTR	35.0%
	ACCATTACCAATCACTGTAT+TGG	-	chr8_3:8897312-8897331	None:intergenic	35.0%
!!	TTTTGGGGAAAAAATGTTGG+AGG	+	chr8_3:8897348-8897367	Msa1275050:three_prime_UTR	35.0%
	TTTGGGGAAAAAATGTTGGA+GGG	+	chr8_3:8897349-8897368	Msa1275050:three_prime_UTR	35.0%
	GGTCAATTTCGTTGTTACAT+TGG	+	chr8_3:8897370-8897389	Msa1275050:three_prime_UTR	35.0%
!!	ACAAGTTTGTTTGGTGTTGA+AGG	-	chr8_3:8897403-8897422	None:intergenic	35.0%
!!	TTTTTCAGACCTGAAGTCAT+TGG	-	chr8_3:8895681-8895700	None:intergenic	35.0%
	TAATGCAAGAGAAAGAAGTG+CGG	-	chr8_3:8895751-8895770	None:intergenic	35.0%
	TTTCTCTTGCATTAGATCCT+TGG	+	chr8_3:8895757-8895776	Msa1275050:CDS	35.0%
	TTCTCTTGCATTAGATCCTT+GGG	+	chr8_3:8895758-8895777	Msa1275050:CDS	35.0%
	AGTTTCTTGCTGATGTTCTT+TGG	+	chr8_3:8895831-8895850	Msa1275050:CDS	35.0%
!!!	TGGAACACTTGCCTTTTTTA+TGG	+	chr8_3:8895854-8895873	Msa1275050:CDS	35.0%
!!!	ACACTTGCCTTTTTTATGGT+AGG	+	chr8_3:8895858-8895877	Msa1275050:intron	35.0%
	ACTTTCATGATGCGTTTACT+TGG	+	chr8_3:8896276-8896295	Msa1275050:CDS	35.0%
	CACCAACCATAATAGTGAAT+AGG	-	chr8_3:8896316-8896335	None:intergenic	35.0%
	CTTCAATATTCACGTGATTC+AGG	-	chr8_3:8897019-8897038	None:intergenic	35.0%
	CTGAATCACGTGAATATTGA+AGG	+	chr8_3:8897017-8897036	Msa1275050:intron	35.0%
	AAGCAATGATTTCGAAGAAG+AGG	+	chr8_3:8897043-8897062	Msa1275050:three_prime_UTR	35.0%
	AGCAATGATTTCGAAGAAGA+GGG	+	chr8_3:8897044-8897063	Msa1275050:three_prime_UTR	35.0%
	GGACACAAAAATATCTTCCA+GGG	+	chr8_3:8897065-8897084	Msa1275050:three_prime_UTR	35.0%
	ACCAATACAGTGATTGGTAA+TGG	+	chr8_3:8897308-8897327	Msa1275050:three_prime_UTR	35.0%
	ACCATTACCAATCACTGTAT+TGG	-	chr8_3:8897312-8897331	None:intergenic	35.0%
!!	TTTTGGGGAAAAAATGTTGG+AGG	+	chr8_3:8897348-8897367	Msa1275050:three_prime_UTR	35.0%
	TTTGGGGAAAAAATGTTGGA+GGG	+	chr8_3:8897349-8897368	Msa1275050:three_prime_UTR	35.0%
	GGTCAATTTCGTTGTTACAT+TGG	+	chr8_3:8897370-8897389	Msa1275050:three_prime_UTR	35.0%
!!	ACAAGTTTGTTTGGTGTTGA+AGG	-	chr8_3:8897403-8897422	None:intergenic	35.0%
	ACATAGCTCATCAAGGTAAG+TGG	-	chr8_3:8895705-8895724	None:intergenic	40.0%
!	TTTTCTCGGAATTCTTCCCA+AGG	-	chr8_3:8895777-8895796	None:intergenic	40.0%
	TTCTTGCTGATGTTCTTTGG+TGG	+	chr8_3:8895834-8895853	Msa1275050:CDS	40.0%
!	TATATGATTGGTCCAGTGGA+TGG	+	chr8_3:8896137-8896156	Msa1275050:intron	40.0%
!	GTTTCATGCTGTTTGTGTGT+AGG	+	chr8_3:8896241-8896260	Msa1275050:intron	40.0%
	GATGCGTTTACTTGGTTGAA+AGG	+	chr8_3:8896284-8896303	Msa1275050:CDS	40.0%
	GGCCTATTCACTATTATGGT+TGG	+	chr8_3:8896311-8896330	Msa1275050:CDS	40.0%
	GTGGCATCTGAAAACCTATA+TGG	+	chr8_3:8896581-8896600	Msa1275050:exon	40.0%
	GGGACACAAAAATATCTTCC+AGG	+	chr8_3:8897064-8897083	Msa1275050:three_prime_UTR	40.0%
!	GACAGAATAGAAGAGAGCAT+TGG	-	chr8_3:8897116-8897135	None:intergenic	40.0%
!!	TTTTGAGAATGTAAGGGGAG+GGG	-	chr8_3:8897441-8897460	None:intergenic	40.0%
!!	CTTTTGAGAATGTAAGGGGA+GGG	-	chr8_3:8897442-8897461	None:intergenic	40.0%
!!	GGAGCTTTTGAGAATGTAAG+GGG	-	chr8_3:8897446-8897465	None:intergenic	40.0%
!!	GGGAGCTTTTGAGAATGTAA+GGG	-	chr8_3:8897447-8897466	None:intergenic	40.0%
	ACATAGCTCATCAAGGTAAG+TGG	-	chr8_3:8895705-8895724	None:intergenic	40.0%
!	TTTTCTCGGAATTCTTCCCA+AGG	-	chr8_3:8895777-8895796	None:intergenic	40.0%
	TTCTTGCTGATGTTCTTTGG+TGG	+	chr8_3:8895834-8895853	Msa1275050:CDS	40.0%
!	TATATGATTGGTCCAGTGGA+TGG	+	chr8_3:8896137-8896156	Msa1275050:intron	40.0%
!	GTTTCATGCTGTTTGTGTGT+AGG	+	chr8_3:8896241-8896260	Msa1275050:intron	40.0%
	GATGCGTTTACTTGGTTGAA+AGG	+	chr8_3:8896284-8896303	Msa1275050:CDS	40.0%
	GGCCTATTCACTATTATGGT+TGG	+	chr8_3:8896311-8896330	Msa1275050:CDS	40.0%
	GTGGCATCTGAAAACCTATA+TGG	+	chr8_3:8896581-8896600	Msa1275050:exon	40.0%
	GGGACACAAAAATATCTTCC+AGG	+	chr8_3:8897064-8897083	Msa1275050:three_prime_UTR	40.0%
!	GACAGAATAGAAGAGAGCAT+TGG	-	chr8_3:8897116-8897135	None:intergenic	40.0%
!!	TTTTGAGAATGTAAGGGGAG+GGG	-	chr8_3:8897441-8897460	None:intergenic	40.0%
!!	CTTTTGAGAATGTAAGGGGA+GGG	-	chr8_3:8897442-8897461	None:intergenic	40.0%
!!	GGAGCTTTTGAGAATGTAAG+GGG	-	chr8_3:8897446-8897465	None:intergenic	40.0%
!!	GGGAGCTTTTGAGAATGTAA+GGG	-	chr8_3:8897447-8897466	None:intergenic	40.0%
	TGGAGCTACATAGCTCATCA+AGG	-	chr8_3:8895712-8895731	None:intergenic	45.0%
	GAGCTATGTAGCTCCAGTAA+TGG	+	chr8_3:8895716-8895735	Msa1275050:CDS	45.0%
	CACAATAGCAGGGGTTGTTA+AGG	+	chr8_3:8896063-8896082	Msa1275050:CDS	45.0%
	AATAGCAGGGGTTGTTAAGG+AGG	+	chr8_3:8896066-8896085	Msa1275050:CDS	45.0%
!	TGCTGTTTGTGTGTAGGTTG+CGG	+	chr8_3:8896247-8896266	Msa1275050:intron	45.0%
	AGATACCAGAAGCTTCATGC+AGG	+	chr8_3:8896481-8896500	Msa1275050:intron	45.0%
	GAGGAGATGGATGAACAAGA+TGG	+	chr8_3:8896559-8896578	Msa1275050:CDS	45.0%
	GAGATGGATGAACAAGATGG+TGG	+	chr8_3:8896562-8896581	Msa1275050:CDS	45.0%
!!	TGGCGTTGATGATATGGCTA+AGG	-	chr8_3:8897096-8897115	None:intergenic	45.0%
!!	GAGCATTGGCGTTGATGATA+TGG	-	chr8_3:8897102-8897121	None:intergenic	45.0%
	TTTGAGAATGTAAGGGGAGG+GGG	-	chr8_3:8897440-8897459	None:intergenic	45.0%
!!	GCTTTTGAGAATGTAAGGGG+AGG	-	chr8_3:8897443-8897462	None:intergenic	45.0%
!!	GGGGAGCTTTTGAGAATGTA+AGG	-	chr8_3:8897448-8897467	None:intergenic	45.0%
	TGGAGCTACATAGCTCATCA+AGG	-	chr8_3:8895712-8895731	None:intergenic	45.0%
	GAGCTATGTAGCTCCAGTAA+TGG	+	chr8_3:8895716-8895735	Msa1275050:CDS	45.0%
	CACAATAGCAGGGGTTGTTA+AGG	+	chr8_3:8896063-8896082	Msa1275050:CDS	45.0%
	AATAGCAGGGGTTGTTAAGG+AGG	+	chr8_3:8896066-8896085	Msa1275050:CDS	45.0%
!	TGCTGTTTGTGTGTAGGTTG+CGG	+	chr8_3:8896247-8896266	Msa1275050:intron	45.0%
	AGATACCAGAAGCTTCATGC+AGG	+	chr8_3:8896481-8896500	Msa1275050:intron	45.0%
	GAGGAGATGGATGAACAAGA+TGG	+	chr8_3:8896559-8896578	Msa1275050:CDS	45.0%
	GAGATGGATGAACAAGATGG+TGG	+	chr8_3:8896562-8896581	Msa1275050:CDS	45.0%
!!	TGGCGTTGATGATATGGCTA+AGG	-	chr8_3:8897096-8897115	None:intergenic	45.0%
!!	GAGCATTGGCGTTGATGATA+TGG	-	chr8_3:8897102-8897121	None:intergenic	45.0%
	TTTGAGAATGTAAGGGGAGG+GGG	-	chr8_3:8897440-8897459	None:intergenic	45.0%
!!	GCTTTTGAGAATGTAAGGGG+AGG	-	chr8_3:8897443-8897462	None:intergenic	45.0%
!!	GGGGAGCTTTTGAGAATGTA+AGG	-	chr8_3:8897448-8897467	None:intergenic	45.0%
!!!	ATTGTATTAAAATATTTTTT+TGG	+	chr8_3:8897251-8897270	Msa1275050:three_prime_UTR	5.0%
!!!	ATTGTATTAAAATATTTTTT+TGG	+	chr8_3:8897251-8897270	Msa1275050:three_prime_UTR	5.0%
	TGTAGCTCCAGTAATGGCTG+TGG	+	chr8_3:8895722-8895741	Msa1275050:CDS	50.0%
	CCCTGCTATTGTGACTGTGA+CGG	-	chr8_3:8896056-8896075	None:intergenic	50.0%
	CCGTCACAGTCACAATAGCA+GGG	+	chr8_3:8896053-8896072	Msa1275050:CDS	50.0%
	CGTCACAGTCACAATAGCAG+GGG	+	chr8_3:8896054-8896073	Msa1275050:CDS	50.0%
	TAAGGAGGCCGTCACCATAT+TGG	+	chr8_3:8896081-8896100	Msa1275050:CDS	50.0%
	ACGAGTAATAGGCCATCCAC+TGG	-	chr8_3:8896152-8896171	None:intergenic	50.0%
	TGTCACCTGCATGAAGCTTC+TGG	-	chr8_3:8896489-8896508	None:intergenic	50.0%
	GCTTCATGCAGGTGACAATG+TGG	+	chr8_3:8896492-8896511	Msa1275050:CDS	50.0%
	ATATGGCTAAGGCAAGTCCC+TGG	-	chr8_3:8897085-8897104	None:intergenic	50.0%
	TGTAGCTCCAGTAATGGCTG+TGG	+	chr8_3:8895722-8895741	Msa1275050:CDS	50.0%
	CCCTGCTATTGTGACTGTGA+CGG	-	chr8_3:8896056-8896075	None:intergenic	50.0%
	CCGTCACAGTCACAATAGCA+GGG	+	chr8_3:8896053-8896072	Msa1275050:CDS	50.0%
	CGTCACAGTCACAATAGCAG+GGG	+	chr8_3:8896054-8896073	Msa1275050:CDS	50.0%
	TAAGGAGGCCGTCACCATAT+TGG	+	chr8_3:8896081-8896100	Msa1275050:CDS	50.0%
	ACGAGTAATAGGCCATCCAC+TGG	-	chr8_3:8896152-8896171	None:intergenic	50.0%
	TGTCACCTGCATGAAGCTTC+TGG	-	chr8_3:8896489-8896508	None:intergenic	50.0%
	GCTTCATGCAGGTGACAATG+TGG	+	chr8_3:8896492-8896511	Msa1275050:CDS	50.0%
	ATATGGCTAAGGCAAGTCCC+TGG	-	chr8_3:8897085-8897104	None:intergenic	50.0%
	GCCGTCACAGTCACAATAGC+AGG	+	chr8_3:8896052-8896071	Msa1275050:CDS	55.0%
	AGAATGTAAGGGGAGGGGGT+AGG	-	chr8_3:8897436-8897455	None:intergenic	55.0%
	GCCGTCACAGTCACAATAGC+AGG	+	chr8_3:8896052-8896071	Msa1275050:CDS	55.0%
	AGAATGTAAGGGGAGGGGGT+AGG	-	chr8_3:8897436-8897455	None:intergenic	55.0%
	GCGGTTGCCACAGCCATTAC+TGG	-	chr8_3:8895732-8895751	None:intergenic	60.0%
	ATGTAAGGGGAGGGGGTAGG+AGG	-	chr8_3:8897433-8897452	None:intergenic	60.0%
	GCGGTTGCCACAGCCATTAC+TGG	-	chr8_3:8895732-8895751	None:intergenic	60.0%
	ATGTAAGGGGAGGGGGTAGG+AGG	-	chr8_3:8897433-8897452	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	8895614	8897487	8895614	ID=Msa1275050;Name=Msa1275050
chr8_3	mRNA	8895614	8897487	8895614	ID=Msa1275050-mRNA-1;Parent=Msa1275050;Name=Msa1275050-mRNA-1;_AED=0.26;_eAED=0.26;_QI=67\|1\|1\|1\|0.75\|0.6\|5\|483\|161
chr8_3	exon	8895614	8895875	8895614	ID=Msa1275050-mRNA-1:exon:3745;Parent=Msa1275050-mRNA-1
chr8_3	exon	8896016	8896102	8896016	ID=Msa1275050-mRNA-1:exon:3746;Parent=Msa1275050-mRNA-1
chr8_3	exon	8896263	8896357	8896263	ID=Msa1275050-mRNA-1:exon:3747;Parent=Msa1275050-mRNA-1
chr8_3	exon	8896483	8896625	8896483	ID=Msa1275050-mRNA-1:exon:3748;Parent=Msa1275050-mRNA-1
chr8_3	exon	8897039	8897487	8897039	ID=Msa1275050-mRNA-1:exon:3749;Parent=Msa1275050-mRNA-1
chr8_3	five_prime_UTR	8895614	8895680	8895614	ID=Msa1275050-mRNA-1:five_prime_utr;Parent=Msa1275050-mRNA-1
chr8_3	CDS	8895681	8895875	8895681	ID=Msa1275050-mRNA-1:cds;Parent=Msa1275050-mRNA-1
chr8_3	CDS	8896016	8896102	8896016	ID=Msa1275050-mRNA-1:cds;Parent=Msa1275050-mRNA-1
chr8_3	CDS	8896263	8896357	8896263	ID=Msa1275050-mRNA-1:cds;Parent=Msa1275050-mRNA-1
chr8_3	CDS	8896483	8896591	8896483	ID=Msa1275050-mRNA-1:cds;Parent=Msa1275050-mRNA-1
chr8_3	three_prime_UTR	8896592	8896625	8896592	ID=Msa1275050-mRNA-1:three_prime_utr;Parent=Msa1275050-mRNA-1
chr8_3	three_prime_UTR	8897039	8897487	8897039	ID=Msa1275050-mRNA-1:three_prime_utr;Parent=Msa1275050-mRNA-1

Gene Sequence

>Msa1275050

ATGACTTCAGGTCTGAAAAATCCACTTACCTTGATGAGCTATGTAGCTCCAGTAATGGCTGTGGCAACCGCACTTCTTTCTCTTGCATTAGATCCTTGGGAAGAATTCCGAGAAAATGAGTACTTTGATAGTTCATGGCATATAACTCGAAGTTTCTTGCTGATGTTCTTTGGTGGAACACTTGCCTTTTTTATGGTACTGACAGAATATATTTTAGTCTCTGTAACTAGTGCCGTCACAGTCACAATAGCAGGGGTTGTTAAGGAGGCCGTCACCATATTGGTTGCGGTATTATACTTTCATGATGCGTTTACTTGGTTGAAAGGATTTGGCCTATTCACTATTATGGTTGGTGTCAGTTTGTTTAATGTGTACAAATACCAGAAGCTTCATGCAGGTGACAATGTGGCAGATCATCATACAAAAGATTCGGCAGCCAAATATGTTATTCTTGAGGAGATGGATGAACAAGATGGTGGCATCTGA

Protein sequence

>Msa1275050

MTSGLKNPLTLMSYVAPVMAVATALLSLALDPWEEFRENEYFDSSWHITRSFLLMFFGGTLAFFMVLTEYILVSVTSAVTVTIAGVVKEAVTILVAVLYFHDAFTWLKGFGLFTIMVGVSLFNVYKYQKLHAGDNVADHHTKDSAAKYVILEEMDEQDGGI*