Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244160 | ACR54455.1 | 98.775 | 408 | 5 | 0 | 1 | 408 | 1 | 408 | 0.0 | 812 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244160 | sp|Q9ZT63|MTP1_ARATH | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.20e-179 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244160 | C9WEK2 | 98.775 | 408 | 5 | 0 | 1 | 408 | 1 | 408 | 0.0 | 812 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044000 | Msa0244160 | 0.801927 | 7.147702e-49 | -8.615850e-47 |
| Msa0046100 | Msa0244160 | 0.807299 | 5.408703e-50 | -8.615850e-47 |
| Msa0097840 | Msa0244160 | 0.801152 | 1.030387e-48 | -8.615850e-47 |
| Msa0115270 | Msa0244160 | 0.803874 | 2.830664e-49 | -8.615850e-47 |
| Msa0127800 | Msa0244160 | 0.811425 | 7.046877e-51 | -8.615850e-47 |
| Msa0201500 | Msa0244160 | 0.933288 | 2.358657e-95 | -8.615850e-47 |
| Msa0244110 | Msa0244160 | 0.996622 | 6.029163e-230 | -8.615850e-47 |
| Msa0244160 | Msa0469850 | 0.800152 | 1.648216e-48 | -8.615850e-47 |
| Msa0244160 | Msa0615710 | 0.814750 | 1.313948e-51 | -8.615850e-47 |
| Msa0244160 | Msa0616160 | 0.803369 | 3.603431e-49 | -8.615850e-47 |
| Msa0244160 | Msa0728630 | 0.822638 | 2.128049e-53 | -8.615850e-47 |
| Msa0244160 | Msa0743720 | 0.804391 | 2.209645e-49 | -8.615850e-47 |
| Msa0244160 | Msa0759690 | 0.801984 | 6.955244e-49 | -8.615850e-47 |
| Msa0244160 | Msa0945110 | 0.809024 | 2.321726e-50 | -8.615850e-47 |
| Msa0244160 | Msa0969520 | 0.807468 | 4.981981e-50 | -8.615850e-47 |
| Msa0244160 | Msa1098120 | 0.800477 | 1.415191e-48 | -8.615850e-47 |
| Msa0244160 | Msa1100050 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0244160 | Msa1135470 | 0.805981 | 1.026818e-49 | -8.615850e-47 |
| Msa0244160 | Msa1243640 | 0.857343 | 1.741792e-62 | -8.615850e-47 |
| Msa0244160 | Msa1452240 | 0.806219 | 9.148352e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244160 | MtrunA17_Chr2g0297881 | 97.549 | 408 | 9 | 1 | 1 | 408 | 2 | 408 | 0.0 | 795 |
| Msa0244160 | MtrunA17_Chr8g0345881 | 77.206 | 408 | 70 | 4 | 1 | 408 | 2 | 386 | 0.0 | 556 |
| Msa0244160 | MtrunA17_Chr4g0032191 | 47.368 | 380 | 175 | 4 | 31 | 407 | 37 | 394 | 3.48e-100 | 303 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0244160 | AT2G46800.5 | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.33e-180 | 506 |
| Msa0244160 | AT2G46800.1 | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.33e-180 | 506 |
| Msa0244160 | AT2G46800.3 | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.33e-180 | 506 |
| Msa0244160 | AT2G46800.4 | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.33e-180 | 506 |
| Msa0244160 | AT2G46800.2 | 68.750 | 416 | 104 | 4 | 1 | 408 | 1 | 398 | 8.33e-180 | 506 |
| Msa0244160 | AT3G58810.1 | 66.835 | 395 | 93 | 4 | 15 | 408 | 74 | 431 | 6.16e-168 | 478 |
| Msa0244160 | AT3G58810.2 | 66.835 | 395 | 93 | 4 | 15 | 408 | 35 | 392 | 7.44e-168 | 476 |
| Msa0244160 | AT3G61940.1 | 71.341 | 164 | 42 | 1 | 245 | 408 | 176 | 334 | 3.24e-74 | 235 |
| Msa0244160 | AT3G61940.1 | 67.320 | 153 | 46 | 2 | 24 | 175 | 7 | 156 | 4.40e-65 | 211 |
| Msa0244160 | AT2G29410.1 | 50.000 | 146 | 73 | 0 | 31 | 176 | 36 | 181 | 4.81e-43 | 155 |
| Msa0244160 | AT2G04620.1 | 28.608 | 395 | 227 | 10 | 33 | 383 | 386 | 769 | 5.53e-33 | 131 |
| Msa0244160 | AT2G04620.2 | 29.134 | 381 | 229 | 9 | 33 | 381 | 218 | 589 | 8.55e-31 | 124 |
| Msa0244160 | AT1G33020.1 | 62.069 | 58 | 18 | 1 | 351 | 408 | 491 | 544 | 7.73e-14 | 73.6 |
Find 114 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGTTAGAAGCAGAATT+TGG | 0.211598 | 2_2:+22341551 | Msa0244160:five_prime_UTR |
| ATCATTATGGCTTTGGTATT+GGG | 0.244966 | 2_2:+22344294 | Msa0244160:CDS |
| TGGTTTCTATGCAATTAATA+TGG | 0.258906 | 2_2:+22344160 | Msa0244160:CDS |
| TCCAGCCCATATAGAAAATA+AGG | 0.287725 | 2_2:-22344076 | None:intergenic |
| TATGTTCCGTTTCTTCTTCT+CGG | 0.293379 | 2_2:-22344568 | None:intergenic |
| CATCATTATGGCTTTGGTAT+TGG | 0.295955 | 2_2:+22344293 | Msa0244160:CDS |
| TGAGGTAGTTGGTGGTATTA+AGG | 0.314580 | 2_2:+22343987 | Msa0244160:CDS |
| GATGAATTTAGTTTAGACTA+TGG | 0.318204 | 2_2:+22345060 | Msa0244160:three_prime_UTR |
| CAACATGCTGAGAAACATTC+TGG | 0.322869 | 2_2:+22344746 | Msa0244160:CDS |
| GAGGTTACTGAACCACTTCT+TGG | 0.325560 | 2_2:+22344528 | Msa0244160:CDS |
| CAATTAATATGGCTGCTTGC+TGG | 0.329178 | 2_2:+22344171 | Msa0244160:CDS |
| CCGAATCCTCGTCAGTCATT+TGG | 0.330373 | 2_2:+22344108 | Msa0244160:CDS |
| TTTCGTACTCCTTTGTTTGT+TGG | 0.332457 | 2_2:-22341598 | None:intergenic |
| CTGTTCATGAGCTGCACATA+TGG | 0.341164 | 2_2:+22344850 | Msa0244160:CDS |
| TCAGATTCAAAAGGGGCTAT+TGG | 0.341343 | 2_2:+22344809 | Msa0244160:CDS |
| TCTTGTGGTGAACATCATTA+TGG | 0.376777 | 2_2:+22344281 | Msa0244160:CDS |
| AATAGAGATTCTTGGTGCTT+TGG | 0.384622 | 2_2:+22344140 | Msa0244160:CDS |
| CAGAGTATTGGTGTAATGAT+TGG | 0.384953 | 2_2:+22344633 | Msa0244160:CDS |
| AGAGTATTGGTGTAATGATT+GGG | 0.403737 | 2_2:+22344634 | Msa0244160:CDS |
| AAACATTCTGGAAGTCTTGA+TGG | 0.415617 | 2_2:+22344758 | Msa0244160:CDS |
| ATGTTTGTAGTTGCTGCATT+TGG | 0.417750 | 2_2:+22344258 | Msa0244160:CDS |
| GGTGAACATCATTATGGCTT+TGG | 0.430114 | 2_2:+22344287 | Msa0244160:CDS |
| AATTAATATGGCTGCTTGCT+GGG | 0.433529 | 2_2:+22344172 | Msa0244160:CDS |
| CCAAATGACTGACGAGGATT+CGG | 0.433628 | 2_2:-22344108 | None:intergenic |
| GCCATTGCTAGACTCATTGC+AGG | 0.434083 | 2_2:+22344210 | Msa0244160:CDS |
| CAGTAACCTCTTTGTGGTCA+TGG | 0.441794 | 2_2:-22344515 | None:intergenic |
| ATGTTCCGTTTCTTCTTCTC+GGG | 0.446423 | 2_2:-22344567 | None:intergenic |
| TTCATGTCCGTTGAGGTAGT+TGG | 0.447396 | 2_2:+22343976 | Msa0244160:CDS |
| TTTCTATATGGGCTGGAGGA+TGG | 0.450599 | 2_2:+22344082 | Msa0244160:CDS |
| TTCTATATGGGCTGGAGGAT+GGG | 0.456683 | 2_2:+22344083 | Msa0244160:CDS |
| CTGGGATATTATTGCGAACA+TGG | 0.461386 | 2_2:+22345188 | Msa0244160:three_prime_UTR |
| CATGGCCATGGCCGTGATCA+TGG | 0.461736 | 2_2:-22344317 | None:intergenic |
| GGTGCGCATCATCATGAGTA+TGG | 0.464413 | 2_2:-22344485 | None:intergenic |
| ATCACATCAGCGTCTGCTTC+AGG | 0.464844 | 2_2:-22344921 | None:intergenic |
| TTTGGGGTTTATTCGGAGTG+TGG | 0.467772 | 2_2:-22341506 | None:intergenic |
| TTGGGGTTTATTCGGAGTGT+GGG | 0.469683 | 2_2:-22341505 | None:intergenic |
| GGGGCATATCTCCACGTACT+TGG | 0.471011 | 2_2:+22344600 | Msa0244160:CDS |
| AGATGCTACTCAGATTCAAA+AGG | 0.472347 | 2_2:+22344800 | Msa0244160:CDS |
| CCATGTGAGTTCTCAGACGC+AGG | 0.479486 | 2_2:+22343877 | Msa0244160:CDS |
| GCCGACCCGAGAAGAAGAAA+CGG | 0.483223 | 2_2:+22344562 | Msa0244160:CDS |
| AAGCACCAAGAATCTCTATT+CGG | 0.486057 | 2_2:-22344137 | None:intergenic |
| CCACTTCTTGGTGAATCAAA+AGG | 0.490972 | 2_2:+22344540 | Msa0244160:CDS |
| TCATATGGTATAAACCTGAA+TGG | 0.495450 | 2_2:+22344664 | Msa0244160:CDS |
| CACATATGGGCCATTACAGT+GGG | 0.495527 | 2_2:+22344864 | Msa0244160:CDS |
| CAATACCTTCCCCACTGTAA+TGG | 0.500293 | 2_2:-22344874 | None:intergenic |
| ATGTCCGTTGAGGTAGTTGG+TGG | 0.504771 | 2_2:+22343979 | Msa0244160:CDS |
| AGCAGACGCTGATGTGATGC+TGG | 0.509043 | 2_2:+22344926 | Msa0244160:CDS |
| GATGCTACTCAGATTCAAAA+GGG | 0.519531 | 2_2:+22344801 | Msa0244160:CDS |
| CATGATCACGGCCATGGCCA+TGG | 0.520047 | 2_2:+22344318 | Msa0244160:CDS |
| ACAAGGTCGTAGACTACATC+AGG | 0.528566 | 2_2:+22344949 | Msa0244160:CDS |
| TCTCAGCATGTTGATAGTTG+TGG | 0.528970 | 2_2:-22344736 | None:intergenic |
| TCAAAAGGGGCTATTGGAGA+TGG | 0.528979 | 2_2:+22344815 | Msa0244160:CDS |
| ATGATGCTCATCTGTATGCT+TGG | 0.529964 | 2_2:-22344400 | None:intergenic |
| TGATTTCAATTATTTGCCCA+TGG | 0.531617 | 2_2:-22343810 | None:intergenic |
| TTGGTATTGGGCCATGATCA+CGG | 0.532393 | 2_2:+22344306 | Msa0244160:CDS |
| TTGGGCCATGATCACGGCCA+TGG | 0.533606 | 2_2:+22344312 | Msa0244160:CDS |
| CTTTGTGGTCATGGTCATGA+TGG | 0.535439 | 2_2:-22344506 | None:intergenic |
| AGTTGCTGCATTTGGTCTTG+TGG | 0.544560 | 2_2:+22344266 | Msa0244160:CDS |
| CGTGATCATGTCCATGGCCA+TGG | 0.547666 | 2_2:-22344329 | None:intergenic |
| CAATCATTACACCAATACTC+TGG | 0.548068 | 2_2:-22344632 | None:intergenic |
| TCCGTTTCTTCTTCTCGGGT+CGG | 0.548332 | 2_2:-22344563 | None:intergenic |
| ATGTAGGAAGGAAAATTTGT+GGG | 0.548918 | 2_2:+22343848 | Msa0244160:CDS |
| GGACATGAAAATAACGCAAA+GGG | 0.552650 | 2_2:-22343962 | None:intergenic |
| GCAGGTCCTCAAGAAGTGGA+TGG | 0.553959 | 2_2:+22344228 | Msa0244160:CDS |
| CAGGTCCTCAAGAAGTGGAT+GGG | 0.559249 | 2_2:+22344229 | Msa0244160:CDS |
| GTGGTTCAGTAACCTCTTTG+TGG | 0.561769 | 2_2:-22344521 | None:intergenic |
| AGTGGAGAACTCCCTGATGT+AGG | 0.568018 | 2_2:+22343832 | Msa0244160:CDS |
| AAACGGAACATAAATGTACA+TGG | 0.573750 | 2_2:+22344579 | Msa0244160:CDS |
| TGTTCATGAGCTGCACATAT+GGG | 0.573784 | 2_2:+22344851 | Msa0244160:CDS |
| CATTGCAGGTCCTCAAGAAG+TGG | 0.575236 | 2_2:+22344224 | Msa0244160:CDS |
| GGAGACTCTATCCAGAGTAT+TGG | 0.578371 | 2_2:+22344621 | Msa0244160:CDS |
| CATGGCCATGGACATGATCA+CGG | 0.583188 | 2_2:+22344330 | Msa0244160:CDS |
| CATGGACATGATCACGGCCA+CGG | 0.584750 | 2_2:+22344336 | Msa0244160:CDS |
| TGGGATATTATTGCGAACAT+GGG | 0.590170 | 2_2:+22345189 | Msa0244160:three_prime_UTR |
| ATGGGCCATTACAGTGGGGA+AGG | 0.591116 | 2_2:+22344869 | Msa0244160:CDS |
| GAGTATTGGTGTAATGATTG+GGG | 0.591360 | 2_2:+22344635 | Msa0244160:CDS |
| GGGCAAATAATTGAAATCAG+TGG | 0.595396 | 2_2:+22343814 | Msa0244160:CDS |
| CCATATAGAAAATAAGGAGA+TGG | 0.595760 | 2_2:-22344070 | None:intergenic |
| AAGAAACAACCAACAAACAA+AGG | 0.596231 | 2_2:+22341589 | Msa0244160:five_prime_UTR |
| CGCTGATGTGATGCTGGACA+AGG | 0.600547 | 2_2:+22344932 | Msa0244160:CDS |
| ACCTGCAATGAGTCTAGCAA+TGG | 0.601692 | 2_2:-22344211 | None:intergenic |
| ATTGGAGATGGAAGAAGTAG+TGG | 0.601966 | 2_2:+22344827 | Msa0244160:CDS |
| AAACTGAAATACCATGGCTG+TGG | 0.606255 | 2_2:-22344374 | None:intergenic |
| CGTGGCCGTGATCATGTCCA+TGG | 0.606876 | 2_2:-22344335 | None:intergenic |
| GAGAACTCCCTGATGTAGGA+AGG | 0.609906 | 2_2:+22343836 | Msa0244160:CDS |
| AAGCACAAAGTGGTCACCAT+GGG | 0.612715 | 2_2:+22343794 | Msa0244160:CDS |
| GATGTAGGAAGGAAAATTTG+TGG | 0.619238 | 2_2:+22343847 | Msa0244160:CDS |
| AACGGAACATAAATGTACAT+GGG | 0.622867 | 2_2:+22344580 | Msa0244160:CDS |
| GGCCACGGACATGATCATCA+TGG | 0.626939 | 2_2:+22344351 | Msa0244160:CDS |
| TTTCGAAGGATTCTGAAGAA+CGG | 0.630672 | 2_2:+22343905 | Msa0244160:CDS |
| CCTGCGTCTGAGAACTCACA+TGG | 0.630931 | 2_2:-22343877 | None:intergenic |
| GCACATATGGGCCATTACAG+TGG | 0.634593 | 2_2:+22344863 | Msa0244160:CDS |
| CGGACATGAAAATAACGCAA+AGG | 0.635615 | 2_2:-22343963 | None:intergenic |
| AATACCACCAACTACCTCAA+CGG | 0.636394 | 2_2:-22343983 | None:intergenic |
| GAAGCACAAAGTGGTCACCA+TGG | 0.639833 | 2_2:+22343793 | Msa0244160:CDS |
| AGACGCAGGATCTATTTCGA+AGG | 0.643242 | 2_2:+22343891 | Msa0244160:CDS |
| GCGAAAGCTTCTGATAGCAG+TGG | 0.645701 | 2_2:+22343939 | Msa0244160:CDS |
| GGGATATTATTGCGAACATG+GGG | 0.648396 | 2_2:+22345190 | Msa0244160:three_prime_UTR |
| TCATGACCATGACCACAAAG+AGG | 0.650002 | 2_2:+22344509 | Msa0244160:CDS |
| GATCATCATGGCCACAGCCA+TGG | 0.655433 | 2_2:+22344363 | Msa0244160:CDS |
| TGAGTAGCATCTATCTCGCG+TGG | 0.657042 | 2_2:-22344789 | None:intergenic |
| GGATAGAGTCTCCAAGTACG+TGG | 0.658730 | 2_2:-22344611 | None:intergenic |
| AGGTCGTAGACTACATCAGG+AGG | 0.671694 | 2_2:+22344952 | Msa0244160:CDS |
| ATGCTACTCAGATTCAAAAG+GGG | 0.673395 | 2_2:+22344802 | Msa0244160:CDS |
| ACGGAACATAAATGTACATG+GGG | 0.674674 | 2_2:+22344581 | Msa0244160:CDS |
| TTGCAGATGGAAGCACAAAG+TGG | 0.690821 | 2_2:+22343784 | Msa0244160:intron |
| TGTAGGAAGGAAAATTTGTG+GGG | 0.696003 | 2_2:+22343849 | Msa0244160:CDS |
| GATGAGCATCATCACACACA+TGG | 0.698036 | 2_2:+22344411 | Msa0244160:CDS |
| AGTATTGGTGTAATGATTGG+GGG | 0.700635 | 2_2:+22344636 | Msa0244160:CDS |
| TGGTAGAAACTGAAATACCA+TGG | 0.701092 | 2_2:-22344380 | None:intergenic |
| GGCCATGATGATCATGTCCG+TGG | 0.701854 | 2_2:-22344353 | None:intergenic |
| GCGCATCATCATGAGTATGG+TGG | 0.706117 | 2_2:-22344482 | None:intergenic |
| GGTCGTAGACTACATCAGGA+GGG | 0.723067 | 2_2:+22344953 | Msa0244160:CDS |
| ACATATGGGCCATTACAGTG+GGG | 0.768745 | 2_2:+22344865 | Msa0244160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTATTAATTCTTTTTTG+TGG | + | chr2_2:22341751-22341770 | Msa0244160:intron | 10.0% |
| !!! | TATATTGTTGTTTTTGTTTT+GGG | - | chr2_2:22341526-22341545 | None:intergenic | 15.0% |
| !!! | TTATATTGTTGTTTTTGTTT+TGG | - | chr2_2:22341527-22341546 | None:intergenic | 15.0% |
| !! | CAAAATAATAATAGAATAGA+AGG | - | chr2_2:22341905-22341924 | None:intergenic | 15.0% |
| !!! | AAATGATATATTATTTTCCA+TGG | - | chr2_2:22342592-22342611 | None:intergenic | 15.0% |
| !! | ATGGAAAATAATATATCATT+TGG | + | chr2_2:22342591-22342610 | Msa0244160:intron | 15.0% |
| !! | TATTTCAGTATAATTGTATA+AGG | + | chr2_2:22342744-22342763 | Msa0244160:intron | 15.0% |
| !!! | TTTGGTAATTTAAGATAATT+AGG | + | chr2_2:22343129-22343148 | Msa0244160:intron | 15.0% |
| !!! | TTGGTAATTTAAGATAATTA+GGG | + | chr2_2:22343130-22343149 | Msa0244160:intron | 15.0% |
| !!! | TAATTTTATTACAGACAATT+AGG | - | chr2_2:22343383-22343402 | None:intergenic | 15.0% |
| !!! | AAATGTTTTATAAAAACTAC+TGG | + | chr2_2:22343574-22343593 | Msa0244160:intron | 15.0% |
| !!! | ATATTGTTGTTTTTGTTTTG+GGG | - | chr2_2:22341525-22341544 | None:intergenic | 20.0% |
| !!! | ACAAATTTATGTGAGATTTT+AGG | + | chr2_2:22341934-22341953 | Msa0244160:intron | 20.0% |
| !! | CTTTCTTTGTATTAAAATTC+CGG | + | chr2_2:22342102-22342121 | Msa0244160:intron | 20.0% |
| !! | TTTCTTTGTATTAAAATTCC+GGG | + | chr2_2:22342103-22342122 | Msa0244160:intron | 20.0% |
| !! | AGTTAGCAATTTCATTTATA+TGG | + | chr2_2:22342151-22342170 | Msa0244160:intron | 20.0% |
| !!! | AATTCTTTTGGATTATGAAA+AGG | - | chr2_2:22342621-22342640 | None:intergenic | 20.0% |
| !! | ATATATAAATAATCGAAGAG+AGG | + | chr2_2:22343099-22343118 | Msa0244160:intron | 20.0% |
| !! | TAAGAGACTTAATTAGTTAA+TGG | - | chr2_2:22343290-22343309 | None:intergenic | 20.0% |
| !! | ATTGTTCTATAATAATCAAG+AGG | + | chr2_2:22343351-22343370 | Msa0244160:intron | 20.0% |
| !!! | TTTCTGATTTGATAATTTGT+TGG | + | chr2_2:22343532-22343551 | Msa0244160:intron | 20.0% |
| !!! | TTCCTGTTTCTTTTTATTTA+TGG | + | chr2_2:22343659-22343678 | Msa0244160:intron | 20.0% |
| !! | TTTCATTAATATATTGCAGA+TGG | + | chr2_2:22343771-22343790 | Msa0244160:intron | 20.0% |
| !! | AAATCATCACTAAACAAAAA+AGG | - | chr2_2:22345035-22345054 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTTGGGGTTTATT+CGG | - | chr2_2:22341516-22341535 | None:intergenic | 25.0% |
| ! | AAAGAGATAAGATTAAGGAA+CGG | - | chr2_2:22341672-22341691 | None:intergenic | 25.0% |
| ! | GTAAGAAAGAGATAAGATTA+AGG | - | chr2_2:22341677-22341696 | None:intergenic | 25.0% |
| ! | ATAATAGAATAGAAGGTTCT+AGG | - | chr2_2:22341898-22341917 | None:intergenic | 25.0% |
| !!! | AGAAACCTGAATATTGATTT+TGG | + | chr2_2:22342274-22342293 | Msa0244160:intron | 25.0% |
| !!! | GAAACCTGAATATTGATTTT+GGG | + | chr2_2:22342275-22342294 | Msa0244160:intron | 25.0% |
| !! | AATCCAAAAGAATTTTCAGA+AGG | + | chr2_2:22342627-22342646 | Msa0244160:intron | 25.0% |
| !!! | TTGATTGACTTAGTCTTTTA+AGG | + | chr2_2:22342824-22342843 | Msa0244160:intron | 25.0% |
| ! | TGTGAATAATGCATTGAAAA+AGG | + | chr2_2:22342929-22342948 | Msa0244160:intron | 25.0% |
| ! | TAATGCATTGAAAAAGGAAA+AGG | + | chr2_2:22342935-22342954 | Msa0244160:intron | 25.0% |
| ! | TTGCTTTGATTATAGAACAA+AGG | + | chr2_2:22343201-22343220 | Msa0244160:intron | 25.0% |
| ! | TGCTTTGATTATAGAACAAA+GGG | + | chr2_2:22343202-22343221 | Msa0244160:intron | 25.0% |
| !! | TGTTTTATAAAAACTACTGG+TGG | + | chr2_2:22343577-22343596 | Msa0244160:intron | 25.0% |
| ! | TTAGATGTTGAATTGGATAA+TGG | + | chr2_2:22343602-22343621 | Msa0244160:intron | 25.0% |
| ! | AGCCATAAATAAAAAGAAAC+AGG | - | chr2_2:22343664-22343683 | None:intergenic | 25.0% |
| ! | AACTGTACAATTCTGTTTAA+TGG | + | chr2_2:22343720-22343739 | Msa0244160:intron | 25.0% |
| !!! | CATCTCCTTATTTTCTATAT+GGG | + | chr2_2:22344071-22344090 | Msa0244160:CDS | 25.0% |
| ! | TGGTTTCTATGCAATTAATA+TGG | + | chr2_2:22344160-22344179 | Msa0244160:CDS | 25.0% |
| !! | AATCTTTTCTGTAATTGTCT+TGG | + | chr2_2:22344713-22344732 | Msa0244160:CDS | 25.0% |
| !! | GATGAATTTAGTTTAGACTA+TGG | + | chr2_2:22345060-22345079 | Msa0244160:three_prime_UTR | 25.0% |
| ! | ATATCCCAGACATAAAAATT+TGG | - | chr2_2:22345177-22345196 | None:intergenic | 25.0% |
| AAAGAGTTAGAAGCAGAATT+TGG | + | chr2_2:22341551-22341570 | Msa0244160:five_prime_UTR | 30.0% | |
| AAGAAACAACCAACAAACAA+AGG | + | chr2_2:22341589-22341608 | Msa0244160:five_prime_UTR | 30.0% | |
| !! | GATTTTAGGTCGATAATCAT+TGG | + | chr2_2:22341948-22341967 | Msa0244160:intron | 30.0% |
| !!! | ATATTGATTTTGGGCTTGTT+TGG | + | chr2_2:22342284-22342303 | Msa0244160:intron | 30.0% |
| ATAAGTTTGTGAGACTGTTT+GGG | + | chr2_2:22342335-22342354 | Msa0244160:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr2_2:22342566-22342585 | Msa0244160:intron | 30.0% | |
| !! | ACTCCTTCTGAAAATTCTTT+TGG | - | chr2_2:22342633-22342652 | None:intergenic | 30.0% |
| ! | AATTTTCAGAAGGAGTCATT+AGG | + | chr2_2:22342637-22342656 | Msa0244160:intron | 30.0% |
| ATGCATTATTCACAAAAGCA+TGG | - | chr2_2:22342923-22342942 | None:intergenic | 30.0% | |
| CAGTACAAATGAGTCTTTAT+TGG | + | chr2_2:22343022-22343041 | Msa0244160:intron | 30.0% | |
| ! | TTAAGATAATTAGGGCCTTT+TGG | + | chr2_2:22343138-22343157 | Msa0244160:intron | 30.0% |
| ! | ACAATAATCCAAAGCTTTGA+GGG | - | chr2_2:22343336-22343355 | None:intergenic | 30.0% |
| AACAATAATCCAAAGCTTTG+AGG | - | chr2_2:22343337-22343356 | None:intergenic | 30.0% | |
| ! | AAACATTTAGACCTCTGAAA+TGG | - | chr2_2:22343562-22343581 | None:intergenic | 30.0% |
| ! | TTTTGCTTCCATTTAATGCT+TGG | + | chr2_2:22343697-22343716 | Msa0244160:intron | 30.0% |
| TGATTTCAATTATTTGCCCA+TGG | - | chr2_2:22343813-22343832 | None:intergenic | 30.0% | |
| ! | AAATTTTCCTTCCTACATCA+GGG | - | chr2_2:22343846-22343865 | None:intergenic | 30.0% |
| ATGTAGGAAGGAAAATTTGT+GGG | + | chr2_2:22343848-22343867 | Msa0244160:CDS | 30.0% | |
| CCATATAGAAAATAAGGAGA+TGG | - | chr2_2:22344073-22344092 | None:intergenic | 30.0% | |
| !!! | CCATCTCCTTATTTTCTATA+TGG | + | chr2_2:22344070-22344089 | Msa0244160:CDS | 30.0% |
| ! | TTTTTCCGAATAGAGATTCT+TGG | + | chr2_2:22344132-22344151 | Msa0244160:CDS | 30.0% |
| !! | ATCATTATGGCTTTGGTATT+GGG | + | chr2_2:22344294-22344313 | Msa0244160:CDS | 30.0% |
| ! | AATGCTTTTCATCATCATGA+TGG | - | chr2_2:22344449-22344468 | None:intergenic | 30.0% |
| AAACGGAACATAAATGTACA+TGG | + | chr2_2:22344579-22344598 | Msa0244160:CDS | 30.0% | |
| AACGGAACATAAATGTACAT+GGG | + | chr2_2:22344580-22344599 | Msa0244160:CDS | 30.0% | |
| !! | AGAGTATTGGTGTAATGATT+GGG | + | chr2_2:22344634-22344653 | Msa0244160:CDS | 30.0% |
| TCATATGGTATAAACCTGAA+TGG | + | chr2_2:22344664-22344683 | Msa0244160:CDS | 30.0% | |
| ! | AAATCGACTATTTTCCATTC+AGG | - | chr2_2:22344681-22344700 | None:intergenic | 30.0% |
| ! | TCATGCCAAATTTTTATGTC+TGG | + | chr2_2:22345169-22345188 | Msa0244160:three_prime_UTR | 30.0% |
| ! | CATGCCAAATTTTTATGTCT+GGG | + | chr2_2:22345170-22345189 | Msa0244160:three_prime_UTR | 30.0% |
| ! | TTTCGTACTCCTTTGTTTGT+TGG | - | chr2_2:22341601-22341620 | None:intergenic | 35.0% |
| CAAGCCCAAAATCAATATTC+AGG | - | chr2_2:22342282-22342301 | None:intergenic | 35.0% | |
| CATAAGTTTGTGAGACTGTT+TGG | + | chr2_2:22342334-22342353 | Msa0244160:intron | 35.0% | |
| ! | ATTATTTTCCATGGCCTGTT+TGG | - | chr2_2:22342583-22342602 | None:intergenic | 35.0% |
| ! | TCAATGAAGTTTTCGCTACT+AGG | + | chr2_2:22342691-22342710 | Msa0244160:intron | 35.0% |
| GTATAATTGTATAAGGACGC+TGG | + | chr2_2:22342751-22342770 | Msa0244160:intron | 35.0% | |
| AATCAAAGCAGAGCAAATAG+AGG | - | chr2_2:22342810-22342829 | None:intergenic | 35.0% | |
| CATAAATCGTACAAGCCAAT+TGG | - | chr2_2:22343058-22343077 | None:intergenic | 35.0% | |
| ATTATGTAGTAACCCTCTGA+GGG | - | chr2_2:22343466-22343485 | None:intergenic | 35.0% | |
| TATTATGTAGTAACCCTCTG+AGG | - | chr2_2:22343467-22343486 | None:intergenic | 35.0% | |
| AAGCTATTACGTAGTTGAAC+CGG | + | chr2_2:22343487-22343506 | Msa0244160:intron | 35.0% | |
| TCTAGTTGCAATTTCATTCC+CGG | - | chr2_2:22343509-22343528 | None:intergenic | 35.0% | |
| AAAAGAAACAGGAAGTTCTG+AGG | - | chr2_2:22343653-22343672 | None:intergenic | 35.0% | |
| GTACAGTTCCAAGCATTAAA+TGG | - | chr2_2:22343708-22343727 | None:intergenic | 35.0% | |
| GGGCAAATAATTGAAATCAG+TGG | + | chr2_2:22343814-22343833 | Msa0244160:CDS | 35.0% | |
| ! | CAAATTTTCCTTCCTACATC+AGG | - | chr2_2:22343847-22343866 | None:intergenic | 35.0% |
| GATGTAGGAAGGAAAATTTG+TGG | + | chr2_2:22343847-22343866 | Msa0244160:CDS | 35.0% | |
| TGTAGGAAGGAAAATTTGTG+GGG | + | chr2_2:22343849-22343868 | Msa0244160:CDS | 35.0% | |
| ! | TTTCGAAGGATTCTGAAGAA+CGG | + | chr2_2:22343905-22343924 | Msa0244160:CDS | 35.0% |
| GGACATGAAAATAACGCAAA+GGG | - | chr2_2:22343965-22343984 | None:intergenic | 35.0% | |
| !!! | TCCTTATTTTCTATATGGGC+TGG | + | chr2_2:22344075-22344094 | Msa0244160:CDS | 35.0% |
| TCCAGCCCATATAGAAAATA+AGG | - | chr2_2:22344079-22344098 | None:intergenic | 35.0% | |
| !!! | TTATTTTCTATATGGGCTGG+AGG | + | chr2_2:22344078-22344097 | Msa0244160:CDS | 35.0% |
| AAAAATCCAAATGACTGACG+AGG | - | chr2_2:22344117-22344136 | None:intergenic | 35.0% | |
| AAGCACCAAGAATCTCTATT+CGG | - | chr2_2:22344140-22344159 | None:intergenic | 35.0% | |
| !! | AATAGAGATTCTTGGTGCTT+TGG | + | chr2_2:22344140-22344159 | Msa0244160:CDS | 35.0% |
| AATTAATATGGCTGCTTGCT+GGG | + | chr2_2:22344172-22344191 | Msa0244160:CDS | 35.0% | |
| ATGTTTGTAGTTGCTGCATT+TGG | + | chr2_2:22344258-22344277 | Msa0244160:CDS | 35.0% | |
| TCTTGTGGTGAACATCATTA+TGG | + | chr2_2:22344281-22344300 | Msa0244160:CDS | 35.0% | |
| !! | CATCATTATGGCTTTGGTAT+TGG | + | chr2_2:22344293-22344312 | Msa0244160:CDS | 35.0% |
| TGGTAGAAACTGAAATACCA+TGG | - | chr2_2:22344383-22344402 | None:intergenic | 35.0% | |
| TATGTTCCGTTTCTTCTTCT+CGG | - | chr2_2:22344571-22344590 | None:intergenic | 35.0% | |
| ACGGAACATAAATGTACATG+GGG | + | chr2_2:22344581-22344600 | Msa0244160:CDS | 35.0% | |
| CAATCATTACACCAATACTC+TGG | - | chr2_2:22344635-22344654 | None:intergenic | 35.0% | |
| !! | CAGAGTATTGGTGTAATGAT+TGG | + | chr2_2:22344633-22344652 | Msa0244160:CDS | 35.0% |
| !! | GAGTATTGGTGTAATGATTG+GGG | + | chr2_2:22344635-22344654 | Msa0244160:CDS | 35.0% |
| !! | AGTATTGGTGTAATGATTGG+GGG | + | chr2_2:22344636-22344655 | Msa0244160:CDS | 35.0% |
| ! | AAACATTCTGGAAGTCTTGA+TGG | + | chr2_2:22344758-22344777 | Msa0244160:CDS | 35.0% |
| AGATGCTACTCAGATTCAAA+AGG | + | chr2_2:22344800-22344819 | Msa0244160:CDS | 35.0% | |
| GATGCTACTCAGATTCAAAA+GGG | + | chr2_2:22344801-22344820 | Msa0244160:CDS | 35.0% | |
| ATGCTACTCAGATTCAAAAG+GGG | + | chr2_2:22344802-22344821 | Msa0244160:CDS | 35.0% | |
| TGGGATATTATTGCGAACAT+GGG | + | chr2_2:22345189-22345208 | Msa0244160:three_prime_UTR | 35.0% | |
| GCAGCTAATAAGATACTCCA+AGG | - | chr2_2:22342050-22342069 | None:intergenic | 40.0% | |
| TGAGAAATCTAACACGAACC+CGG | - | chr2_2:22342124-22342143 | None:intergenic | 40.0% | |
| !! | GATTTTGGGCTTGTTTGGTT+TGG | + | chr2_2:22342289-22342308 | Msa0244160:intron | 40.0% |
| ! | GCTTATTTGAGCTTGTTTGC+TGG | + | chr2_2:22342311-22342330 | Msa0244160:intron | 40.0% |
| ! | AACGAAGTACAATGGTGTCA+AGG | - | chr2_2:22342900-22342919 | None:intergenic | 40.0% |
| AAGCATGGAACGAAGTACAA+TGG | - | chr2_2:22342908-22342927 | None:intergenic | 40.0% | |
| !! | ATTGGAGCTTGCTAACCAAT+TGG | + | chr2_2:22343040-22343059 | Msa0244160:intron | 40.0% |
| GGCTTGTACGATTTATGATG+AGG | + | chr2_2:22343061-22343080 | Msa0244160:intron | 40.0% | |
| !! | TTATAGAACAAAGGGCATCG+AGG | + | chr2_2:22343210-22343229 | Msa0244160:intron | 40.0% |
| !! | TATAGAACAAAGGGCATCGA+GGG | + | chr2_2:22343211-22343230 | Msa0244160:intron | 40.0% |
| TTGTGTGTGTGTGTGTAATC+GGG | - | chr2_2:22343261-22343280 | None:intergenic | 40.0% | |
| CTTGTGTGTGTGTGTGTAAT+CGG | - | chr2_2:22343262-22343281 | None:intergenic | 40.0% | |
| AGCTATTACGTAGTTGAACC+GGG | + | chr2_2:22343488-22343507 | Msa0244160:intron | 40.0% | |
| TTGTTGGTCATCCATTTCAG+AGG | + | chr2_2:22343548-22343567 | Msa0244160:intron | 40.0% | |
| ! | GGTGGTCTTAGATGTTGAAT+TGG | + | chr2_2:22343595-22343614 | Msa0244160:intron | 40.0% |
| CGGACATGAAAATAACGCAA+AGG | - | chr2_2:22343966-22343985 | None:intergenic | 40.0% | |
| !! | CGTTATTTTCATGTCCGTTG+AGG | + | chr2_2:22343969-22343988 | Msa0244160:CDS | 40.0% |
| AATACCACCAACTACCTCAA+CGG | - | chr2_2:22343986-22344005 | None:intergenic | 40.0% | |
| !! | TGAGGTAGTTGGTGGTATTA+AGG | + | chr2_2:22343987-22344006 | Msa0244160:CDS | 40.0% |
| CAATTAATATGGCTGCTTGC+TGG | + | chr2_2:22344171-22344190 | Msa0244160:CDS | 40.0% | |
| AAAAACCCATCCACTTCTTG+AGG | - | chr2_2:22344237-22344256 | None:intergenic | 40.0% | |
| GGTGAACATCATTATGGCTT+TGG | + | chr2_2:22344287-22344306 | Msa0244160:CDS | 40.0% | |
| AAACTGAAATACCATGGCTG+TGG | - | chr2_2:22344377-22344396 | None:intergenic | 40.0% | |
| ATGATGCTCATCTGTATGCT+TGG | - | chr2_2:22344403-22344422 | None:intergenic | 40.0% | |
| !! | CCTTTTGATTCACCAAGAAG+TGG | - | chr2_2:22344543-22344562 | None:intergenic | 40.0% |
| CCACTTCTTGGTGAATCAAA+AGG | + | chr2_2:22344540-22344559 | Msa0244160:CDS | 40.0% | |
| ATGTTCCGTTTCTTCTTCTC+GGG | - | chr2_2:22344570-22344589 | None:intergenic | 40.0% | |
| !! | TCTCAGCATGTTGATAGTTG+TGG | - | chr2_2:22344739-22344758 | None:intergenic | 40.0% |
| CAACATGCTGAGAAACATTC+TGG | + | chr2_2:22344746-22344765 | Msa0244160:CDS | 40.0% | |
| TCAGATTCAAAAGGGGCTAT+TGG | + | chr2_2:22344809-22344828 | Msa0244160:CDS | 40.0% | |
| ATTGGAGATGGAAGAAGTAG+TGG | + | chr2_2:22344827-22344846 | Msa0244160:CDS | 40.0% | |
| TGTTCATGAGCTGCACATAT+GGG | + | chr2_2:22344851-22344870 | Msa0244160:CDS | 40.0% | |
| CTGGGATATTATTGCGAACA+TGG | + | chr2_2:22345188-22345207 | Msa0244160:three_prime_UTR | 40.0% | |
| GGGATATTATTGCGAACATG+GGG | + | chr2_2:22345190-22345209 | Msa0244160:three_prime_UTR | 40.0% | |
| TTGGGGTTTATTCGGAGTGT+GGG | - | chr2_2:22341508-22341527 | None:intergenic | 45.0% | |
| ! | TTTGGGGTTTATTCGGAGTG+TGG | - | chr2_2:22341509-22341528 | None:intergenic | 45.0% |
| !! | TCTGCGCTTATTTTCGACCT+TGG | + | chr2_2:22342030-22342049 | Msa0244160:intron | 45.0% |
| TAGCTGCTGTATTCAACTCC+TGG | + | chr2_2:22342063-22342082 | Msa0244160:intron | 45.0% | |
| TGCTGTATTCAACTCCTGGA+AGG | + | chr2_2:22342067-22342086 | Msa0244160:intron | 45.0% | |
| GCTGTATTCAACTCCTGGAA+GGG | + | chr2_2:22342068-22342087 | Msa0244160:intron | 45.0% | |
| !! | AGAGAGAAAAGTACCCTTCC+AGG | - | chr2_2:22342084-22342103 | None:intergenic | 45.0% |
| CTGTTTATCCAAACAGGCCA+TGG | + | chr2_2:22342572-22342591 | Msa0244160:intron | 45.0% | |
| TGTCCGTAAGCACTTTCTTG+TGG | + | chr2_2:22342969-22342988 | Msa0244160:intron | 45.0% | |
| !! | CGTCCACAAGAAAGTGCTTA+CGG | - | chr2_2:22342975-22342994 | None:intergenic | 45.0% |
| TAAGCACTTTCTTGTGGACG+TGG | + | chr2_2:22342975-22342994 | Msa0244160:intron | 45.0% | |
| !! | TCGAAGAGAGGAGAAGTGTT+TGG | + | chr2_2:22343111-22343130 | Msa0244160:intron | 45.0% |
| ! | AATTAGGGCCTTTTGGCATG+TGG | + | chr2_2:22343145-22343164 | Msa0244160:intron | 45.0% |
| ! | ATTAGGGCCTTTTGGCATGT+GGG | + | chr2_2:22343146-22343165 | Msa0244160:intron | 45.0% |
| ATGTCGTTGAGCGTCTGTAA+GGG | + | chr2_2:22343169-22343188 | Msa0244160:intron | 45.0% | |
| ACCTATGACCCTCAAAGCTT+TGG | + | chr2_2:22343325-22343344 | Msa0244160:intron | 45.0% | |
| !! | TCCAAAGCTTTGAGGGTCAT+AGG | - | chr2_2:22343329-22343348 | None:intergenic | 45.0% |
| TATACTATCTCCTCCCTCAG+AGG | + | chr2_2:22343450-22343469 | Msa0244160:intron | 45.0% | |
| ATACTATCTCCTCCCTCAGA+GGG | + | chr2_2:22343451-22343470 | Msa0244160:intron | 45.0% | |
| GTTGATGCAGCTCCTATTAG+TGG | + | chr2_2:22343624-22343643 | Msa0244160:intron | 45.0% | |
| !! | GTTCTGAGGACTCCACTAAT+AGG | - | chr2_2:22343639-22343658 | None:intergenic | 45.0% |
| ! | TTGCAGATGGAAGCACAAAG+TGG | + | chr2_2:22343784-22343803 | Msa0244160:intron | 45.0% |
| AAGCACAAAGTGGTCACCAT+GGG | + | chr2_2:22343794-22343813 | Msa0244160:CDS | 45.0% | |
| AGACGCAGGATCTATTTCGA+AGG | + | chr2_2:22343891-22343910 | Msa0244160:CDS | 45.0% | |
| TTCATGTCCGTTGAGGTAGT+TGG | + | chr2_2:22343976-22343995 | Msa0244160:CDS | 45.0% | |
| !! | TTTCTATATGGGCTGGAGGA+TGG | + | chr2_2:22344082-22344101 | Msa0244160:CDS | 45.0% |
| !! | TTCTATATGGGCTGGAGGAT+GGG | + | chr2_2:22344083-22344102 | Msa0244160:CDS | 45.0% |
| CCAAATGACTGACGAGGATT+CGG | - | chr2_2:22344111-22344130 | None:intergenic | 45.0% | |
| ACCTGCAATGAGTCTAGCAA+TGG | - | chr2_2:22344214-22344233 | None:intergenic | 45.0% | |
| !! | AGTTGCTGCATTTGGTCTTG+TGG | + | chr2_2:22344266-22344285 | Msa0244160:CDS | 45.0% |
| ! | TTGGTATTGGGCCATGATCA+CGG | + | chr2_2:22344306-22344325 | Msa0244160:CDS | 45.0% |
| GATGAGCATCATCACACACA+TGG | + | chr2_2:22344411-22344430 | Msa0244160:CDS | 45.0% | |
| CTTTGTGGTCATGGTCATGA+TGG | - | chr2_2:22344509-22344528 | None:intergenic | 45.0% | |
| TCATGACCATGACCACAAAG+AGG | + | chr2_2:22344509-22344528 | Msa0244160:CDS | 45.0% | |
| CAGTAACCTCTTTGTGGTCA+TGG | - | chr2_2:22344518-22344537 | None:intergenic | 45.0% | |
| GTGGTTCAGTAACCTCTTTG+TGG | - | chr2_2:22344524-22344543 | None:intergenic | 45.0% | |
| GAGGTTACTGAACCACTTCT+TGG | + | chr2_2:22344528-22344547 | Msa0244160:CDS | 45.0% | |
| GGAGACTCTATCCAGAGTAT+TGG | + | chr2_2:22344621-22344640 | Msa0244160:CDS | 45.0% | |
| TGATTGGGGGAGCAATCATA+TGG | + | chr2_2:22344649-22344668 | Msa0244160:CDS | 45.0% | |
| TCAAAAGGGGCTATTGGAGA+TGG | + | chr2_2:22344815-22344834 | Msa0244160:CDS | 45.0% | |
| CTGTTCATGAGCTGCACATA+TGG | + | chr2_2:22344850-22344869 | Msa0244160:CDS | 45.0% | |
| CACATATGGGCCATTACAGT+GGG | + | chr2_2:22344864-22344883 | Msa0244160:CDS | 45.0% | |
| ACATATGGGCCATTACAGTG+GGG | + | chr2_2:22344865-22344884 | Msa0244160:CDS | 45.0% | |
| CAATACCTTCCCCACTGTAA+TGG | - | chr2_2:22344877-22344896 | None:intergenic | 45.0% | |
| ACAAGGTCGTAGACTACATC+AGG | + | chr2_2:22344949-22344968 | Msa0244160:CDS | 45.0% | |
| ACGACATCCCACATGCCAAA+AGG | - | chr2_2:22343156-22343175 | None:intergenic | 50.0% | |
| GATGTCGTTGAGCGTCTGTA+AGG | + | chr2_2:22343168-22343187 | Msa0244160:intron | 50.0% | |
| ! | ATGTAGTAACCCTCTGAGGG+AGG | - | chr2_2:22343463-22343482 | None:intergenic | 50.0% |
| GAAGCACAAAGTGGTCACCA+TGG | + | chr2_2:22343793-22343812 | Msa0244160:CDS | 50.0% | |
| AGTGGAGAACTCCCTGATGT+AGG | + | chr2_2:22343832-22343851 | Msa0244160:CDS | 50.0% | |
| GAGAACTCCCTGATGTAGGA+AGG | + | chr2_2:22343836-22343855 | Msa0244160:CDS | 50.0% | |
| GCGAAAGCTTCTGATAGCAG+TGG | + | chr2_2:22343939-22343958 | Msa0244160:CDS | 50.0% | |
| ATGTCCGTTGAGGTAGTTGG+TGG | + | chr2_2:22343979-22343998 | Msa0244160:CDS | 50.0% | |
| CCGAATCCTCGTCAGTCATT+TGG | + | chr2_2:22344108-22344127 | Msa0244160:CDS | 50.0% | |
| GCCATTGCTAGACTCATTGC+AGG | + | chr2_2:22344210-22344229 | Msa0244160:CDS | 50.0% | |
| CATTGCAGGTCCTCAAGAAG+TGG | + | chr2_2:22344224-22344243 | Msa0244160:CDS | 50.0% | |
| CAGGTCCTCAAGAAGTGGAT+GGG | + | chr2_2:22344229-22344248 | Msa0244160:CDS | 50.0% | |
| CATGGCCATGGACATGATCA+CGG | + | chr2_2:22344330-22344349 | Msa0244160:CDS | 50.0% | |
| GCGCATCATCATGAGTATGG+TGG | - | chr2_2:22344485-22344504 | None:intergenic | 50.0% | |
| GGTGCGCATCATCATGAGTA+TGG | - | chr2_2:22344488-22344507 | None:intergenic | 50.0% | |
| TCCGTTTCTTCTTCTCGGGT+CGG | - | chr2_2:22344566-22344585 | None:intergenic | 50.0% | |
| GGATAGAGTCTCCAAGTACG+TGG | - | chr2_2:22344614-22344633 | None:intergenic | 50.0% | |
| TGAGTAGCATCTATCTCGCG+TGG | - | chr2_2:22344792-22344811 | None:intergenic | 50.0% | |
| GCACATATGGGCCATTACAG+TGG | + | chr2_2:22344863-22344882 | Msa0244160:CDS | 50.0% | |
| ATCACATCAGCGTCTGCTTC+AGG | - | chr2_2:22344924-22344943 | None:intergenic | 50.0% | |
| AGGTCGTAGACTACATCAGG+AGG | + | chr2_2:22344952-22344971 | Msa0244160:CDS | 50.0% | |
| GGTCGTAGACTACATCAGGA+GGG | + | chr2_2:22344953-22344972 | Msa0244160:CDS | 50.0% | |
| !! | TGTGTGTAATCGGGAGCGCT+GGG | - | chr2_2:22343252-22343271 | None:intergenic | 55.0% |
| CCTGCGTCTGAGAACTCACA+TGG | - | chr2_2:22343880-22343899 | None:intergenic | 55.0% | |
| CCATGTGAGTTCTCAGACGC+AGG | + | chr2_2:22343877-22343896 | Msa0244160:CDS | 55.0% | |
| GCAGGTCCTCAAGAAGTGGA+TGG | + | chr2_2:22344228-22344247 | Msa0244160:CDS | 55.0% | |
| CGTGATCATGTCCATGGCCA+TGG | - | chr2_2:22344332-22344351 | None:intergenic | 55.0% | |
| CATGGACATGATCACGGCCA+CGG | + | chr2_2:22344336-22344355 | Msa0244160:CDS | 55.0% | |
| GGCCACGGACATGATCATCA+TGG | + | chr2_2:22344351-22344370 | Msa0244160:CDS | 55.0% | |
| GGCCATGATGATCATGTCCG+TGG | - | chr2_2:22344356-22344375 | None:intergenic | 55.0% | |
| GATCATCATGGCCACAGCCA+TGG | + | chr2_2:22344363-22344382 | Msa0244160:CDS | 55.0% | |
| GCCGACCCGAGAAGAAGAAA+CGG | + | chr2_2:22344562-22344581 | Msa0244160:CDS | 55.0% | |
| GGGGCATATCTCCACGTACT+TGG | + | chr2_2:22344600-22344619 | Msa0244160:CDS | 55.0% | |
| ATGGGCCATTACAGTGGGGA+AGG | + | chr2_2:22344869-22344888 | Msa0244160:CDS | 55.0% | |
| AGCAGACGCTGATGTGATGC+TGG | + | chr2_2:22344926-22344945 | Msa0244160:CDS | 55.0% | |
| CGCTGATGTGATGCTGGACA+AGG | + | chr2_2:22344932-22344951 | Msa0244160:CDS | 55.0% | |
| ! | GTGTGTGTAATCGGGAGCGC+TGG | - | chr2_2:22343253-22343272 | None:intergenic | 60.0% |
| TTGGGCCATGATCACGGCCA+TGG | + | chr2_2:22344312-22344331 | Msa0244160:CDS | 60.0% | |
| CATGGCCATGGCCGTGATCA+TGG | - | chr2_2:22344320-22344339 | None:intergenic | 60.0% | |
| CATGATCACGGCCATGGCCA+TGG | + | chr2_2:22344318-22344337 | Msa0244160:CDS | 60.0% | |
| CGTGGCCGTGATCATGTCCA+TGG | - | chr2_2:22344338-22344357 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 22341499 | 22345229 | 22341499 | ID=Msa0244160;Name=Msa0244160 |
| chr2_2 | mRNA | 22341499 | 22345229 | 22341499 | ID=Msa0244160-mRNA-1;Parent=Msa0244160;Name=Msa0244160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=163|1|1|1|0|0.5|2|213|408 |
| chr2_2 | exon | 22341499 | 22341661 | 22341499 | ID=Msa0244160-mRNA-1:exon:8599;Parent=Msa0244160-mRNA-1 |
| chr2_2 | exon | 22343790 | 22345229 | 22343790 | ID=Msa0244160-mRNA-1:exon:8600;Parent=Msa0244160-mRNA-1 |
| chr2_2 | five_prime_UTR | 22341499 | 22341661 | 22341499 | ID=Msa0244160-mRNA-1:five_prime_utr;Parent=Msa0244160-mRNA-1 |
| chr2_2 | CDS | 22343790 | 22345016 | 22343790 | ID=Msa0244160-mRNA-1:cds;Parent=Msa0244160-mRNA-1 |
| chr2_2 | three_prime_UTR | 22345017 | 22345229 | 22345017 | ID=Msa0244160-mRNA-1:three_prime_utr;Parent=Msa0244160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
