AlfalfaGEDB | Msa1243640

M. sativa cultivar zhongmu-4 / Msa1243640

KEGG: K03549
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662
PFAM: PF02705.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243640	XP_013445933.1	99.048	840	8	0	1	840	1	840	0.0	1712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243640	sp\|O80739\|POT12_ARATH	73.759	846	195	9	3	840	1	827	0.0	1242

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243640	A0A072U2G0	99.048	840	8	0	1	840	1	840	0.0	1712

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1243640	0.802976	4.345369e-49	-8.615850e-47
Msa0146260	Msa1243640	0.800409	1.461067e-48	-8.615850e-47
Msa0201500	Msa1243640	0.847390	1.191795e-59	-8.615850e-47
Msa0225680	Msa1243640	0.809306	2.020037e-50	-8.615850e-47
Msa0226890	Msa1243640	0.815595	8.528268e-52	-8.615850e-47
Msa0244110	Msa1243640	0.850157	2.035439e-60	-8.615850e-47
Msa0244160	Msa1243640	0.857343	1.741792e-62	-8.615850e-47
Msa0279700	Msa1243640	0.800346	1.504406e-48	-8.615850e-47
Msa0302000	Msa1243640	0.808483	3.028670e-50	-8.615850e-47
Msa0428590	Msa1243640	0.817910	2.580055e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1243640	MtrunA17_Chr8g0365001	99.048	840	8	0	1	840	1	840	1712
Msa1243640	MtrunA17_Chr2g0279131	55.699	851	356	6	7	840	3	849	946
Msa1243640	MtrunA17_Chr5g0429991	56.265	830	348	6	21	840	25	849	921
Msa1243640	MtrunA17_Chr4g0055471	45.761	802	392	9	61	840	35	815	732
Msa1243640	MtrunA17_Chr2g0297291	47.765	783	377	10	71	840	26	789	720
Msa1243640	MtrunA17_Chr6g0461871	46.912	761	388	7	94	840	27	785	717
Msa1243640	MtrunA17_Chr7g0268981	45.711	781	378	7	59	838	36	771	715
Msa1243640	MtrunA17_Chr4g0052401	46.547	782	386	10	71	840	26	787	689
Msa1243640	MtrunA17_Chr5g0430731	44.751	762	397	6	81	840	15	754	687
Msa1243640	MtrunA17_Chr6g0451081	45.736	774	393	9	84	840	13	776	684

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1243640	AT1G60160.1	73.759	846	195	9	3	840	1	827	1242
Msa1243640	AT5G09400.1	56.628	860	337	8	8	840	8	858	936
Msa1243640	AT4G33530.1	55.900	839	355	5	14	840	20	855	920
Msa1243640	AT4G13420.1	45.366	820	404	11	23	838	4	783	732
Msa1243640	AT4G33530.2	58.509	617	249	4	228	840	14	627	729
Msa1243640	AT2G35060.4	47.248	745	371	6	100	840	66	792	702
Msa1243640	AT2G35060.1	47.248	745	371	6	100	840	66	792	702
Msa1243640	AT2G35060.3	47.248	745	371	6	100	840	66	792	702
Msa1243640	AT2G35060.2	47.185	746	371	7	100	840	66	793	698
Msa1243640	AT1G31120.1	48.183	743	372	6	100	840	65	796	697

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Find 179 sgRNAs with CRISPR-Local

Find 410 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGCATGGTCAGCTCT+TGG	0.578795	8_2:+30134421	Msa1243640:CDS
AAAGCTAATGATAATGGAGA+AGG	0.577182	8_2:+30132403	Msa1243640:CDS
AAATAAAGGAGACTTTGGAA+AGG	0.655391	8_2:+30132639	Msa1243640:CDS
AAATTCTGACCATGCAATAG+TGG	0.471151	8_2:-30136407	None:intergenic
AACCGTACCTAGCAACACAG+CGG	0.771805	8_2:-30136187	None:intergenic
AACTCAGATGACGATGTCTT+GGG	0.403908	8_2:+30132313	Msa1243640:CDS
AAGAAATAATAGATATATGC+TGG	0.419596	8_2:-30134385	None:intergenic
AAGAACCATAAAGCAAGTAC+AGG	0.514695	8_2:-30134295	None:intergenic
AAGCATTACTAGTGTCACCA+AGG	0.672487	8_2:-30135715	None:intergenic
AAGCTCTTCTGCTCCATTAC+TGG	0.258461	8_2:-30136378	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTGTGAAAAAATGGAACAT+TGG	-	chr8_2:30130523-30130542	None:intergenic	30.0%
AAGTTGGATAAGATTGAAGA+AGG	+	chr8_2:30130656-30130675	Msa1243640:CDS	30.0%
GTTTATAAGTGTAACTCAGA+TGG	+	chr8_2:30130996-30131015	Msa1243640:intron	30.0%
TTTGAGAGAACTTATGAACA+CGG	+	chr8_2:30131127-30131146	Msa1243640:intron	30.0%
TAGAACCTTATGGAATCATT+TGG	+	chr8_2:30131873-30131892	Msa1243640:intron	30.0%
ATAGACCAAATGATTCCATA+AGG	-	chr8_2:30131881-30131900	None:intergenic	30.0%
ACACAAAATTTGCATCACAA+AGG	-	chr8_2:30131973-30131992	None:intergenic	30.0%
TATTGCATACTACTCATTAG+TGG	-	chr8_2:30132000-30132019	None:intergenic	30.0%
GTGTTAAATAAAAGGTGAAG+TGG	-	chr8_2:30132121-30132140	None:intergenic	30.0%
GTTCTCAAAGCTAATGATAA+TGG	+	chr8_2:30132397-30132416	Msa1243640:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	30130465	30137000	30130465	ID=Msa1243640;Name=Msa1243640
chr8_2	mRNA	30130465	30137000	30130465	ID=Msa1243640-mRNA-1;Parent=Msa1243640;Name=Msa1243640-mRNA-1;_AED=0.14;_eAED=0.14;_QI=188\|1\|1\|1\|1\|1\|9\|264\|840
chr8_2	exon	30130465	30130904	30130465	ID=Msa1243640-mRNA-1:exon:10160;Parent=Msa1243640-mRNA-1
chr8_2	exon	30132196	30132424	30132196	ID=Msa1243640-mRNA-1:exon:10161;Parent=Msa1243640-mRNA-1
chr8_2	exon	30132504	30132752	30132504	ID=Msa1243640-mRNA-1:exon:10162;Parent=Msa1243640-mRNA-1
chr8_2	exon	30133276	30133326	30133276	ID=Msa1243640-mRNA-1:exon:10163;Parent=Msa1243640-mRNA-1
chr8_2	exon	30134206	30134466	30134206	ID=Msa1243640-mRNA-1:exon:10164;Parent=Msa1243640-mRNA-1
chr8_2	exon	30134661	30134713	30134661	ID=Msa1243640-mRNA-1:exon:10165;Parent=Msa1243640-mRNA-1
chr8_2	exon	30134817	30134931	30134817	ID=Msa1243640-mRNA-1:exon:10166;Parent=Msa1243640-mRNA-1
chr8_2	exon	30135218	30135472	30135218	ID=Msa1243640-mRNA-1:exon:10167;Parent=Msa1243640-mRNA-1
chr8_2	exon	30135679	30137000	30135679	ID=Msa1243640-mRNA-1:exon:10168;Parent=Msa1243640-mRNA-1
chr8_2	five_prime_UTR	30130465	30130652	30130465	ID=Msa1243640-mRNA-1:five_prime_utr;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30130653	30130904	30130653	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30132196	30132424	30132196	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30132504	30132752	30132504	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30133276	30133326	30133276	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30134206	30134466	30134206	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30134661	30134713	30134661	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30134817	30134931	30134817	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30135218	30135472	30135218	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	CDS	30135679	30136736	30135679	ID=Msa1243640-mRNA-1:cds;Parent=Msa1243640-mRNA-1
chr8_2	three_prime_UTR	30136737	30137000	30136737	ID=Msa1243640-mRNA-1:three_prime_utr;Parent=Msa1243640-mRNA-1

Gene Sequence

>Msa1243640

ATGAAGTTGGATAAGATTGAAGAAGGAAGTGTGAGGTTGTTGGGAAGTAGCAGTGGTGGGAGTAGTGAGTCTAGGTGGGTTGATGGAAGTGAAGTTGATTGGGATGAAGATCCTCCATGGTCTCATCATGGAAGTGATGGTAGAGAAGGGTATGGTTCAATTAGGAGAAGACTTGTTAAGAAACCTAAAAGGGTTGACTCTTTTGATGTTGAAGCTATGGAGATTGCTGCTGGTCATGATCAACACTCCAAGGATCTTTCCCTTTGGCCTACCATTGCATTAGCATTTCAGACTCTTGGTGTTGTATATGGTGACATGGGAACAAGTCCTCTTTATGTTTTTGCTGGTGTCTTCAGCAAGGTTCCTATTAACTCAGATGACGATGTCTTGGGGGCGTTATCGTTAGTAATGTACACGATAGCGCTTATTCCATTAGCAAAATATGTTTTTATAGTTCTCAAAGCTAATGATAATGGAGAAGGAGGAACATTCGCGCTGTACTCGCTGATTTGTAGGTATGCAAATGTGAATCTGCTTCCGAATCGCCAACAAGCTGATGAACAAATCTCTAGTTTTAAGCTCAAACTTCCTACGCCAGAACTCGAAAGGGCTTTAAAAATAAAGGAGACTTTGGAAAGGACGTCGATCATGAAAAATGTGTTGTTAGTGTTGGTTCTTCTTGGAACTTCTATGATTATTGGTGATGGTATTCTAACTCCAGCGATATCAGTGATGTCTGCCATAAGTGGTCTACAGGATCAAATAAATGGATTTGGTACAGCTGAAGTGGTTAGTATATCTATTTTGGTCCTCGTGGCTTTGTTCAGCATTCAACAGTTCGGTACTGGCAAAGTGGGTTTCATGTTCGCCCCTGTACTTGCTTTATGGTTCTTTTCTCTGGGTTCTATTGGAATATATAATATACTTAAATATGATATTACTGTTGTGAGAGCACTCAACCCAGCATATATCTATTATTTCTTCAAGAATAATGGCAAAAGTGCATGGTCAGCTCTTGGTGGTTGTGTTCTGTGCATTACAGGTGCAGAAGCAATGTTTGCAGATCTTGGACATTTTACTGTACCAGCAATACAGATTGCTTTCACTTGTGTGGTATTTCCATGTCTCCTCCTTGCTTATATGGGCCAAGCTGCTTTTCTGATGAAAAATCCTGCGTCTTATTCAAGTGTATTCTTCAAATCTGTTCCAGAGAGTCTTTTCTGGCCAGTGTTTGTTATAGCTACACTTGGTGCTATGATTGCCAGTCAAGCAATGATATCTGCTACTTTTTCATGCGTTAAGCAATCAATGGCTTTGGGATGCTTCCCCAGGCTCAAGATAATTCATACCTCAAAAAAGTTCATGGGTCAAATTTACATACCTGTTATTAATTGGTTTCTGATGATTATGTGCATCGTTGTCGTTTCCATCTTCCAAAGCACTACAGATATTGCAAATGCATATGGCATTGCTGAAGTTGGTGTGATGATGGTTAGCACCACCTTGGTGACACTAGTAATGCTTTTAATTTGGCAGACAAACTTGTTTTTAGCATTTTGTTTCCTACTTGTTTTTGGTTCTGTGGAGCTCATTTTCATGTCTTCAGTCCTATCGAAAATTTTCGAGGGTGGCTGGCTTCCACTTGCCTTTGCTACCTTTTTCCTCTCCGTGATGTATACGTGGAACTATGGGAGTGTCTTGAAGTACCGAAGGGAAGTAAGAGAAAAAATTTCAATGGACTTAATGCTTGATCTTGGTTCCAATCTTGGAACAGTAAGAGTACCAGGAATAGGATTGCTATATAATGAGCTTGTCCAAGGTGTTCCCTCCATTTTCCTGCAGTTCCTTCTAAGCCTTCCAGCTCTTCATTCCATTGTAGTTTTTGTCTGCATTAAATATGTTCCGATTCCTGTGGTTCCTCAAGAAGAAAGATTTTTATTCCGAAGAGTATGTCCGAAAGATTATCATATGTTCCGCTGTGTTGCTAGGTACGGTTACAAAGACGTTCGGAAGGAAGATCACCATGCATTTGAGCAACTTCTTATGGAAAGTCTTGAGAAATTCTTGAGAAGGGAAGCGTTAGAAGCTGCGTTGGAGTTGGAGGGTAACTTAACTGATGGTGTGGACACCGCCTCGGTGGATACAAGAAATTCTGATCTTGCAGCCAGTAATGGAGCAGAAGAGCTTAGGATTCCACTATTGCATGGTCAGAATTTAGAAGAAACAGGAACTTCTACCTCACATGAAGGTGCGTCAACATTATTACCATCGAGTTATATGTCGTCGGATGAAGATCCTAGTCTAGAATACGAGCTTTCAGCTCTTAGAGAAGCAATGGATTCAGGATTCACCTATTTGCTTGGACATGGAGATGTGAAAGCAAAGAAGAACTCTTTTTTCTTTAAGAAATTAGTCATAAATTATTTCTATGCATTTCTGAGAAAGAATTGCAGAGGAGGTACTGCAAATATGAAAGTACCTCACACCAATATCATTCAAGTGGGGATGACATATATGGTCTGA

Protein sequence

>Msa1243640

MKLDKIEEGSVRLLGSSSGGSSESRWVDGSEVDWDEDPPWSHHGSDGREGYGSIRRRLVKKPKRVDSFDVEAMEIAAGHDQHSKDLSLWPTIALAFQTLGVVYGDMGTSPLYVFAGVFSKVPINSDDDVLGALSLVMYTIALIPLAKYVFIVLKANDNGEGGTFALYSLICRYANVNLLPNRQQADEQISSFKLKLPTPELERALKIKETLERTSIMKNVLLVLVLLGTSMIIGDGILTPAISVMSAISGLQDQINGFGTAEVVSISILVLVALFSIQQFGTGKVGFMFAPVLALWFFSLGSIGIYNILKYDITVVRALNPAYIYYFFKNNGKSAWSALGGCVLCITGAEAMFADLGHFTVPAIQIAFTCVVFPCLLLAYMGQAAFLMKNPASYSSVFFKSVPESLFWPVFVIATLGAMIASQAMISATFSCVKQSMALGCFPRLKIIHTSKKFMGQIYIPVINWFLMIMCIVVVSIFQSTTDIANAYGIAEVGVMMVSTTLVTLVMLLIWQTNLFLAFCFLLVFGSVELIFMSSVLSKIFEGGWLPLAFATFFLSVMYTWNYGSVLKYRREVREKISMDLMLDLGSNLGTVRVPGIGLLYNELVQGVPSIFLQFLLSLPALHSIVVFVCIKYVPIPVVPQEERFLFRRVCPKDYHMFRCVARYGYKDVRKEDHHAFEQLLMESLEKFLRREALEAALELEGNLTDGVDTASVDTRNSDLAASNGAEELRIPLLHGQNLEETGTSTSHEGASTLLPSSYMSSDEDPSLEYELSALREAMDSGFTYLLGHGDVKAKKNSFFFKKLVINYFYAFLRKNCRGGTANMKVPHTNIIQVGMTYMV*