AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097840 MtrunA17_Chr1g0152421 91.456 316 5 4 1 296 45 358 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097840 AT3G12350.1 47.937 315 135 10 1 296 37 341 2.20e-88 270
Msa0097840 AT3G12350.2 45.865 266 116 8 1 248 37 292 8.15e-69 216

Find 127 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGGCCTTTGCAAGGTCTT+TGG 0.200546 1_3:+3653822 Msa0097840:CDS
GACGTCCAATGCTACATTTC+TGG 0.201692 1_3:+3654421 Msa0097840:CDS
CATCGTTTATTGCTGGTTCT+AGG 0.206156 1_3:+3653330 Msa0097840:CDS
TGGACAAATTGTCAATCTTT+TGG 0.213219 1_3:+3653436 Msa0097840:CDS
CATACATAAATTATGATAAA+AGG 0.232351 1_3:-3655023 None:intergenic
TGTTGTAGAATTACTGATAT+TGG 0.240480 1_3:+3655138 Msa0097840:three_prime_UTR
ACTTCCTTTGGTTTGGAGTT+TGG 0.253651 1_3:+3654996 Msa0097840:three_prime_UTR
GGATTGCTTGTCGACGGCTT+GGG 0.277270 1_3:+3654357 Msa0097840:CDS
AATTTATGTATGCAAAATAA+TGG 0.281426 1_3:+3655034 Msa0097840:three_prime_UTR
CAGTACCAGGATGGTACTTT+TGG 0.296124 1_3:+3654698 Msa0097840:three_prime_UTR
CTCCTTGATCTATCGCTTCC+AGG 0.306404 1_3:-3653710 None:intergenic
GATTTGAATTTCAATGATAA+TGG 0.306458 1_3:+3653476 Msa0097840:CDS
TTAGTTATTCCTGACCTTGC+TGG 0.312716 1_3:+3654638 Msa0097840:three_prime_UTR
CAAAGGAAGTCACAAATAAA+AGG 0.321306 1_3:-3654983 None:intergenic
ATTTGTGACTTCCTTTGGTT+TGG 0.322707 1_3:+3654989 Msa0097840:three_prime_UTR
TTGTGGCTTATGATGACATT+GGG 0.324472 1_3:+3654333 Msa0097840:CDS
ATTATGACCGTTTCCTTAGA+TGG 0.330722 1_3:+3654867 Msa0097840:three_prime_UTR
GGGATTGCTTGTCGACGGCT+TGG 0.341950 1_3:+3654356 Msa0097840:CDS
TTGGTGGAGAGGATGGGATT+GGG 0.345801 1_3:+3653621 Msa0097840:intron
TTGTGGGTATCAGGTGAAAA+AGG 0.345933 1_3:+3653382 Msa0097840:intron
TTTCCCTTTGTGATCGAAGA+TGG 0.350083 1_3:+3653144 Msa0097840:CDS
TTTGGTGGAGAGGATGGGAT+TGG 0.350376 1_3:+3653620 Msa0097840:intron
TTTGGGAGGAGTTCAAGTTT+TGG 0.353648 1_3:+3653572 Msa0097840:CDS
GTTGGAGATTTATCAGCATT+TGG 0.356391 1_3:+3653673 Msa0097840:CDS
AGCTACATGATCAATGTAGA+AGG 0.363363 1_3:-3654800 None:intergenic
CATGAATGGGATAATCTCAT+TGG 0.366343 1_3:+3653236 Msa0097840:CDS
AAAGGATGGCTAGGCGGAAA+TGG 0.377661 1_3:+3653753 Msa0097840:CDS
TTTATCAGCATTTGGCGAAC+AGG 0.378829 1_3:+3653681 Msa0097840:CDS
AAGAAGCAAACTACCATCTA+AGG 0.385408 1_3:-3654880 None:intergenic
TCTATACTGTTCTTCATGAA+TGG 0.393074 1_3:+3653222 Msa0097840:CDS
GTATTGGAGGAGAATGTGTT+TGG 0.400412 1_3:+3653554 Msa0097840:CDS
GCATTGGACGTCCAGAAAAC+CGG 0.403350 1_3:-3654410 None:intergenic
TTCAAATCAGCTCGACCATT+AGG 0.409832 1_3:-3653461 None:intergenic
TGGGGTTCATCGTTTATTGC+TGG 0.412811 1_3:+3653323 Msa0097840:CDS
AAAATGGGTCTTTCTGAAGA+TGG 0.413389 1_3:+3653416 Msa0097840:CDS
ATTTATGTATGCAAAATAAT+GGG 0.417827 1_3:+3655035 Msa0097840:three_prime_UTR
TGTGATTGAATCACCTTCAT+TGG 0.420198 1_3:+3653289 Msa0097840:CDS
TTCCCTTTGTGATCGAAGAT+GGG 0.431132 1_3:+3653145 Msa0097840:CDS
AATTTCAATGATAATGGTAA+TGG 0.434720 1_3:+3653482 Msa0097840:CDS
GTTCCGATGATGCAAAGCTT+TGG 0.439146 1_3:+3653120 Msa0097840:CDS
CTATACTGTTCTTCATGAAT+GGG 0.446445 1_3:+3653223 Msa0097840:CDS
ATCAGTAATTCTACAACAAA+GGG 0.451079 1_3:-3655133 None:intergenic
GGAGTGCTGAGGGAAGGATT+TGG 0.457355 1_3:+3654675 Msa0097840:three_prime_UTR
CCCATAAAACAAACATTCAC+AGG 0.458327 1_3:-3653518 None:intergenic
ATCGTTTATTGCTGGTTCTA+GGG 0.460830 1_3:+3653331 Msa0097840:CDS
ACAGCGTCGCGGCCTTTGCA+AGG 0.463863 1_3:+3653815 Msa0097840:CDS
TTTGTTGCTCCAGCAAGGTC+AGG 0.468825 1_3:-3654647 None:intergenic
GCATAAGTAGAAAACCGTTC+AGG 0.473059 1_3:-3654386 None:intergenic
TATCAGTAATTCTACAACAA+AGG 0.477064 1_3:-3655134 None:intergenic
TTCTACATTGATCATGTAGC+TGG 0.483900 1_3:+3654802 Msa0097840:three_prime_UTR
AAGCCAAAGCTTTGCATCAT+CGG 0.484101 1_3:-3653123 None:intergenic
AGCGGAGGAAGGAGAAAGAA+AGG 0.485086 1_3:+3653735 Msa0097840:CDS
AAGGGATGAAATGTAAAAGA+AGG 0.486821 1_3:-3655077 None:intergenic
GATTGCTTGTCGACGGCTTG+GGG 0.488182 1_3:+3654358 Msa0097840:CDS
GATTCTTCCTCTAGAGGAAA+GGG 0.489339 1_3:-3654449 None:intergenic
CTAGAGGAAGAATCTATGTA+TGG 0.493087 1_3:+3654458 Msa0097840:CDS
GCATGTACCTCAAAGCAATT+CGG 0.493160 1_3:+3653089 None:intergenic
GTTCCTATGTCTGATGTTGA+AGG 0.493188 1_3:+3654536 Msa0097840:three_prime_UTR
AAGGATGGCTAGGCGGAAAT+GGG 0.493284 1_3:+3653754 Msa0097840:CDS
GATGGGATTGGGATTGATAG+TGG 0.494324 1_3:+3653632 Msa0097840:CDS
TTGAATCATTACAATTTACA+AGG 0.497500 1_3:-3655096 None:intergenic
CTTGTGGCTTATGATGACAT+TGG 0.497541 1_3:+3654332 Msa0097840:CDS
GGGAAGGATTTGGCAGTACC+AGG 0.500366 1_3:+3654685 Msa0097840:three_prime_UTR
TATTGGAGGAGAATGTGTTT+GGG 0.501145 1_3:+3653555 Msa0097840:CDS
TAAATCTCCAACATCCGATC+AGG 0.507561 1_3:-3653662 None:intergenic
TTGCTGGAGCAACAAATCCT+AGG 0.512520 1_3:+3654654 Msa0097840:three_prime_UTR
CATTGGACGTCCAGAAAACC+GGG 0.513622 1_3:-3654409 None:intergenic
GTCCTGGAAGCGATAGATCA+AGG 0.517466 1_3:+3653708 Msa0097840:CDS
ACCCCATCTTCGATCACAAA+GGG 0.524071 1_3:-3653147 None:intergenic
TTGGCGAACAGGGTTAGTCC+TGG 0.526985 1_3:+3653692 Msa0097840:CDS
GCCTTTGCAAGGTCTTTGGA+AGG 0.527690 1_3:+3653826 Msa0097840:CDS
TGGCTTATGATGACATTGGG+GGG 0.537170 1_3:+3654336 Msa0097840:CDS
GGAAGCTCCCTTTCCTCTAG+AGG 0.537906 1_3:+3654442 Msa0097840:CDS
ATCAAGGAGGCAGCGGAGGA+AGG 0.538316 1_3:+3653724 Msa0097840:CDS
ATCCTTCCCTCAGCACTCCT+AGG 0.538671 1_3:-3654671 None:intergenic
ATACATTGTGCACAATGTAC+AGG 0.540048 1_3:-3654831 None:intergenic
TAAAAGGTGACTCACAGGTA+AGG 0.542238 1_3:-3654967 None:intergenic
ACAAATAAAAGGTGACTCAC+AGG 0.542860 1_3:-3654972 None:intergenic
CGCGTTCATCTCATTCTCAC+CGG 0.549174 1_3:+3654485 Msa0097840:CDS
AGCTTCCAGAAATGTAGCAT+TGG 0.550342 1_3:-3654426 None:intergenic
GCGATAGATCAAGGAGGCAG+CGG 0.554402 1_3:+3653717 Msa0097840:CDS
ACAACCTTGACAAAATGCTC+AGG 0.558875 1_3:-3653779 None:intergenic
TTCCTATGTCTGATGTTGAA+GGG 0.560578 1_3:+3654537 Msa0097840:three_prime_UTR
AGATTCTTCCTCTAGAGGAA+AGG 0.560648 1_3:-3654450 None:intergenic
CATTCAAAGAAAACCAATGA+AGG 0.561339 1_3:-3653302 None:intergenic
AATAACGGCGGTGAGGATTG+TGG 0.562502 1_3:+3653596 Msa0097840:CDS
TCCCTTTGTGATCGAAGATG+GGG 0.562967 1_3:+3653146 Msa0097840:CDS
CATCCACGATGCAGCCATCA+CGG 0.563183 1_3:-3654769 None:intergenic
CAAACTACCATCTAAGGAAA+CGG 0.563549 1_3:-3654874 None:intergenic
CAAATCCAAAAGTACCATCC+TGG 0.565240 1_3:-3654703 None:intergenic
TGCAAAGGCCGCGACGCTGT+CGG 0.570802 1_3:-3653812 None:intergenic
TTATCAGCATTTGGCGAACA+GGG 0.571157 1_3:+3653682 Msa0097840:CDS
AGGGATGAAATGTAAAAGAA+GGG 0.573161 1_3:-3655076 None:intergenic
TGGAGGAGAATGTGTTTGGG+AGG 0.574903 1_3:+3653558 Msa0097840:CDS
ATAGTGGATCTCCGCCTGAT+CGG 0.575195 1_3:+3653648 Msa0097840:CDS
GGCTTGGGGATCCTCCTGAA+CGG 0.581303 1_3:+3654372 Msa0097840:CDS
TCCTATGTCTGATGTTGAAG+GGG 0.581453 1_3:+3654538 Msa0097840:three_prime_UTR
TTAGACAGCCAGTGTCAAGC+AGG 0.581696 1_3:+3654913 Msa0097840:three_prime_UTR
GATTCAATCACAGCACTACC+AGG 0.583468 1_3:-3653278 None:intergenic
ACCCCTTCAACATCAGACAT+AGG 0.583701 1_3:-3654539 None:intergenic
ATCCTAGGAGTGCTGAGGGA+AGG 0.587648 1_3:+3654669 Msa0097840:three_prime_UTR
TACATAGATTCTTCCTCTAG+AGG 0.588763 1_3:-3654455 None:intergenic
TAGGATTTGTTGCTCCAGCA+AGG 0.588773 1_3:-3654652 None:intergenic
AAACAGCGCCTGCTTGACAC+TGG 0.589717 1_3:-3654921 None:intergenic
GTGGCTTATGATGACATTGG+GGG 0.592051 1_3:+3654335 Msa0097840:CDS
ATCTCCAACATCCGATCAGG+CGG 0.594679 1_3:-3653659 None:intergenic
AGGAGAAAGAAAGGATGGCT+AGG 0.597024 1_3:+3653744 Msa0097840:CDS
TGTGGCTTATGATGACATTG+GGG 0.601421 1_3:+3654334 Msa0097840:CDS
TGAATCATTACAATTTACAA+GGG 0.602105 1_3:-3655095 None:intergenic
ATCTCCGCCTGATCGGATGT+TGG 0.603433 1_3:+3653655 Msa0097840:CDS
GAGGAAGGAGAAAGAAAGGA+TGG 0.607264 1_3:+3653739 Msa0097840:CDS
ACAAATCCTAGGAGTGCTGA+GGG 0.607764 1_3:+3654665 Msa0097840:three_prime_UTR
ATAGATCAAGGAGGCAGCGG+AGG 0.612328 1_3:+3653720 Msa0097840:CDS
GCTACATGATCAATGTAGAA+GGG 0.622990 1_3:-3654799 None:intergenic
AACAAATCCTAGGAGTGCTG+AGG 0.626540 1_3:+3654664 Msa0097840:three_prime_UTR
CTATTTGTCAGACAATGAAG+TGG 0.627887 1_3:+3654580 Msa0097840:three_prime_UTR
TAAGTAGAAAACCGTTCAGG+AGG 0.632265 1_3:-3654383 None:intergenic
CAATGTCATCATAAGCCACA+AGG 0.632624 1_3:-3654331 None:intergenic
AGGATTTGGCAGTACCAGGA+TGG 0.636908 1_3:+3654689 Msa0097840:three_prime_UTR
AAGTCCAAACTCCAAACCAA+AGG 0.640446 1_3:-3655000 None:intergenic
AACCCCATCTTCGATCACAA+AGG 0.646394 1_3:-3653148 None:intergenic
ATTGCTCGCCGACAGCGTCG+CGG 0.659760 1_3:+3653804 Msa0097840:CDS
ACCTTCCAAAGACCTTGCAA+AGG 0.660944 1_3:-3653827 None:intergenic
TGTCCGTGATGGCTGCATCG+TGG 0.697908 1_3:+3654766 Msa0097840:three_prime_UTR
AGAAAGAAAGGATGGCTAGG+CGG 0.721844 1_3:+3653747 Msa0097840:CDS
CTGGAAGCGATAGATCAAGG+AGG 0.765091 1_3:+3653711 Msa0097840:CDS
ATTGGACGTCCAGAAAACCG+GGG 0.783017 1_3:-3654408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTAAGATACCATAAAA+TGG - chr1_3:3654067-3654086 None:intergenic 15.0%
!! CATACATAAATTATGATAAA+AGG - chr1_3:3655026-3655045 None:intergenic 15.0%
!! AATTTATGTATGCAAAATAA+TGG + chr1_3:3655034-3655053 Msa0097840:three_prime_UTR 15.0%
!! ATTTATGTATGCAAAATAAT+GGG + chr1_3:3655035-3655054 Msa0097840:three_prime_UTR 15.0%
!! ATAATTAAGATACCATAAAA+TGG - chr1_3:3654067-3654086 None:intergenic 15.0%
!! CATACATAAATTATGATAAA+AGG - chr1_3:3655026-3655045 None:intergenic 15.0%
!! AATTTATGTATGCAAAATAA+TGG + chr1_3:3655034-3655053 Msa0097840:three_prime_UTR 15.0%
!! ATTTATGTATGCAAAATAAT+GGG + chr1_3:3655035-3655054 Msa0097840:three_prime_UTR 15.0%
!! GATTTGAATTTCAATGATAA+TGG + chr1_3:3653476-3653495 Msa0097840:CDS 20.0%
!!! AATTTCAATGATAATGGTAA+TGG + chr1_3:3653482-3653501 Msa0097840:CDS 20.0%
!! ATAATTGAGCATAAATAACA+AGG - chr1_3:3653867-3653886 None:intergenic 20.0%
!!! AAAATTATAACTTGATAGCT+TGG + chr1_3:3653900-3653919 Msa0097840:intron 20.0%
!! GTATCTTAATTATATCATGT+TGG + chr1_3:3654074-3654093 Msa0097840:intron 20.0%
!! TGAATCATTACAATTTACAA+GGG - chr1_3:3655098-3655117 None:intergenic 20.0%
!! TTGAATCATTACAATTTACA+AGG - chr1_3:3655099-3655118 None:intergenic 20.0%
!! GATTTGAATTTCAATGATAA+TGG + chr1_3:3653476-3653495 Msa0097840:CDS 20.0%
!!! AATTTCAATGATAATGGTAA+TGG + chr1_3:3653482-3653501 Msa0097840:CDS 20.0%
!! ATAATTGAGCATAAATAACA+AGG - chr1_3:3653867-3653886 None:intergenic 20.0%
!!! AAAATTATAACTTGATAGCT+TGG + chr1_3:3653900-3653919 Msa0097840:intron 20.0%
!! GTATCTTAATTATATCATGT+TGG + chr1_3:3654074-3654093 Msa0097840:intron 20.0%
!! TGAATCATTACAATTTACAA+GGG - chr1_3:3655098-3655117 None:intergenic 20.0%
!! TTGAATCATTACAATTTACA+AGG - chr1_3:3655099-3655118 None:intergenic 20.0%
! CAAAACCCAAATCAAAAAAT+GGG + chr1_3:3653172-3653191 Msa0097840:CDS 25.0%
! AAAACCCAAATCAAAAAATG+GGG + chr1_3:3653173-3653192 Msa0097840:CDS 25.0%
!!! TTCATTGGTTTTCTTTGAAT+GGG + chr1_3:3653304-3653323 Msa0097840:CDS 25.0%
! ACAAATTTCAGATTCTGATT+GGG - chr1_3:3653366-3653385 None:intergenic 25.0%
!! AATCAGAATCTGAAATTTGT+GGG + chr1_3:3653366-3653385 Msa0097840:intron 25.0%
!!! GATCATTGATTTCCATTTTA+TGG + chr1_3:3654052-3654071 Msa0097840:intron 25.0%
!! TTATATCATGTTGGAGTTTT+TGG + chr1_3:3654083-3654102 Msa0097840:intron 25.0%
!!! ATTTTGAAGATGAATGATAG+TGG + chr1_3:3654243-3654262 Msa0097840:intron 25.0%
! ATCAGTAATTCTACAACAAA+GGG - chr1_3:3655136-3655155 None:intergenic 25.0%
! TATCAGTAATTCTACAACAA+AGG - chr1_3:3655137-3655156 None:intergenic 25.0%
! TGTTGTAGAATTACTGATAT+TGG + chr1_3:3655138-3655157 Msa0097840:three_prime_UTR 25.0%
! CAAAACCCAAATCAAAAAAT+GGG + chr1_3:3653172-3653191 Msa0097840:CDS 25.0%
! AAAACCCAAATCAAAAAATG+GGG + chr1_3:3653173-3653192 Msa0097840:CDS 25.0%
!!! TTCATTGGTTTTCTTTGAAT+GGG + chr1_3:3653304-3653323 Msa0097840:CDS 25.0%
! ACAAATTTCAGATTCTGATT+GGG - chr1_3:3653366-3653385 None:intergenic 25.0%
!! AATCAGAATCTGAAATTTGT+GGG + chr1_3:3653366-3653385 Msa0097840:intron 25.0%
!!! GATCATTGATTTCCATTTTA+TGG + chr1_3:3654052-3654071 Msa0097840:intron 25.0%
!! TTATATCATGTTGGAGTTTT+TGG + chr1_3:3654083-3654102 Msa0097840:intron 25.0%
!!! ATTTTGAAGATGAATGATAG+TGG + chr1_3:3654243-3654262 Msa0097840:intron 25.0%
! ATCAGTAATTCTACAACAAA+GGG - chr1_3:3655136-3655155 None:intergenic 25.0%
! TATCAGTAATTCTACAACAA+AGG - chr1_3:3655137-3655156 None:intergenic 25.0%
! TGTTGTAGAATTACTGATAT+TGG + chr1_3:3655138-3655157 Msa0097840:three_prime_UTR 25.0%
!!! CCATTTTTTGATTTGGGTTT+TGG - chr1_3:3653174-3653193 None:intergenic 30.0%
CCAAAACCCAAATCAAAAAA+TGG + chr1_3:3653171-3653190 Msa0097840:CDS 30.0%
!!! TTCACCCCATTTTTTGATTT+GGG - chr1_3:3653180-3653199 None:intergenic 30.0%
TCTATACTGTTCTTCATGAA+TGG + chr1_3:3653222-3653241 Msa0097840:CDS 30.0%
CTATACTGTTCTTCATGAAT+GGG + chr1_3:3653223-3653242 Msa0097840:CDS 30.0%
!!! ATAATCTCATTGGTTTTTGG+AGG + chr1_3:3653246-3653265 Msa0097840:CDS 30.0%
CATTCAAAGAAAACCAATGA+AGG - chr1_3:3653305-3653324 None:intergenic 30.0%
!!! CTTCATTGGTTTTCTTTGAA+TGG + chr1_3:3653303-3653322 Msa0097840:CDS 30.0%
!!! TCATTGGTTTTCTTTGAATG+GGG + chr1_3:3653305-3653324 Msa0097840:CDS 30.0%
CACAAATTTCAGATTCTGAT+TGG - chr1_3:3653367-3653386 None:intergenic 30.0%
! CAATCAGAATCTGAAATTTG+TGG + chr1_3:3653365-3653384 Msa0097840:intron 30.0%
!!! AAAGGTGCCTTTTTTGAAAA+TGG + chr1_3:3653400-3653419 Msa0097840:CDS 30.0%
!!! AAGGTGCCTTTTTTGAAAAT+GGG + chr1_3:3653401-3653420 Msa0097840:CDS 30.0%
! GAAAGACCCATTTTCAAAAA+AGG - chr1_3:3653410-3653429 None:intergenic 30.0%
! TGGACAAATTGTCAATCTTT+TGG + chr1_3:3653436-3653455 Msa0097840:CDS 30.0%
!!! TCCTGTGAATGTTTGTTTTA+TGG + chr1_3:3653517-3653536 Msa0097840:CDS 30.0%
!!! CCTGTGAATGTTTGTTTTAT+GGG + chr1_3:3653518-3653537 Msa0097840:CDS 30.0%
!!! CTGTGAATGTTTGTTTTATG+GGG + chr1_3:3653519-3653538 Msa0097840:CDS 30.0%
! GAAAACTCATTTTGTATTGG+AGG + chr1_3:3653541-3653560 Msa0097840:CDS 30.0%
!!! AGTTCAAGTTTTGGGAATAA+CGG + chr1_3:3653581-3653600 Msa0097840:CDS 30.0%
TACTACAAAATGCAACCAAT+GGG - chr1_3:3654175-3654194 None:intergenic 30.0%
TTACTACAAAATGCAACCAA+TGG - chr1_3:3654176-3654195 None:intergenic 30.0%
! TGCATTTTGTAGTAATCCAT+TGG + chr1_3:3654181-3654200 Msa0097840:intron 30.0%
ATGAAAAATATTGTCCGTGA+TGG + chr1_3:3654755-3654774 Msa0097840:three_prime_UTR 30.0%
CAAAGGAAGTCACAAATAAA+AGG - chr1_3:3654986-3655005 None:intergenic 30.0%
!! CTTTTATTTGTGACTTCCTT+TGG + chr1_3:3654984-3655003 Msa0097840:three_prime_UTR 30.0%
AGGGATGAAATGTAAAAGAA+GGG - chr1_3:3655079-3655098 None:intergenic 30.0%
AAGGGATGAAATGTAAAAGA+AGG - chr1_3:3655080-3655099 None:intergenic 30.0%
!!! CCATTTTTTGATTTGGGTTT+TGG - chr1_3:3653174-3653193 None:intergenic 30.0%
CCAAAACCCAAATCAAAAAA+TGG + chr1_3:3653171-3653190 Msa0097840:CDS 30.0%
!!! TTCACCCCATTTTTTGATTT+GGG - chr1_3:3653180-3653199 None:intergenic 30.0%
TCTATACTGTTCTTCATGAA+TGG + chr1_3:3653222-3653241 Msa0097840:CDS 30.0%
CTATACTGTTCTTCATGAAT+GGG + chr1_3:3653223-3653242 Msa0097840:CDS 30.0%
!!! ATAATCTCATTGGTTTTTGG+AGG + chr1_3:3653246-3653265 Msa0097840:CDS 30.0%
CATTCAAAGAAAACCAATGA+AGG - chr1_3:3653305-3653324 None:intergenic 30.0%
!!! CTTCATTGGTTTTCTTTGAA+TGG + chr1_3:3653303-3653322 Msa0097840:CDS 30.0%
!!! TCATTGGTTTTCTTTGAATG+GGG + chr1_3:3653305-3653324 Msa0097840:CDS 30.0%
CACAAATTTCAGATTCTGAT+TGG - chr1_3:3653367-3653386 None:intergenic 30.0%
! CAATCAGAATCTGAAATTTG+TGG + chr1_3:3653365-3653384 Msa0097840:intron 30.0%
!!! AAAGGTGCCTTTTTTGAAAA+TGG + chr1_3:3653400-3653419 Msa0097840:CDS 30.0%
!!! AAGGTGCCTTTTTTGAAAAT+GGG + chr1_3:3653401-3653420 Msa0097840:CDS 30.0%
! GAAAGACCCATTTTCAAAAA+AGG - chr1_3:3653410-3653429 None:intergenic 30.0%
! TGGACAAATTGTCAATCTTT+TGG + chr1_3:3653436-3653455 Msa0097840:CDS 30.0%
!!! TCCTGTGAATGTTTGTTTTA+TGG + chr1_3:3653517-3653536 Msa0097840:CDS 30.0%
!!! CCTGTGAATGTTTGTTTTAT+GGG + chr1_3:3653518-3653537 Msa0097840:CDS 30.0%
!!! CTGTGAATGTTTGTTTTATG+GGG + chr1_3:3653519-3653538 Msa0097840:CDS 30.0%
! GAAAACTCATTTTGTATTGG+AGG + chr1_3:3653541-3653560 Msa0097840:CDS 30.0%
!!! AGTTCAAGTTTTGGGAATAA+CGG + chr1_3:3653581-3653600 Msa0097840:CDS 30.0%
TACTACAAAATGCAACCAAT+GGG - chr1_3:3654175-3654194 None:intergenic 30.0%
TTACTACAAAATGCAACCAA+TGG - chr1_3:3654176-3654195 None:intergenic 30.0%
! TGCATTTTGTAGTAATCCAT+TGG + chr1_3:3654181-3654200 Msa0097840:intron 30.0%
ATGAAAAATATTGTCCGTGA+TGG + chr1_3:3654755-3654774 Msa0097840:three_prime_UTR 30.0%
CAAAGGAAGTCACAAATAAA+AGG - chr1_3:3654986-3655005 None:intergenic 30.0%
!! CTTTTATTTGTGACTTCCTT+TGG + chr1_3:3654984-3655003 Msa0097840:three_prime_UTR 30.0%
AGGGATGAAATGTAAAAGAA+GGG - chr1_3:3655079-3655098 None:intergenic 30.0%
AAGGGATGAAATGTAAAAGA+AGG - chr1_3:3655080-3655099 None:intergenic 30.0%
!!! CTTCACCCCATTTTTTGATT+TGG - chr1_3:3653181-3653200 None:intergenic 35.0%
CAAATCAAAAAATGGGGTGA+AGG + chr1_3:3653179-3653198 Msa0097840:CDS 35.0%
CATGAATGGGATAATCTCAT+TGG + chr1_3:3653236-3653255 Msa0097840:CDS 35.0%
!!! GGGATAATCTCATTGGTTTT+TGG + chr1_3:3653243-3653262 Msa0097840:CDS 35.0%
TGTGATTGAATCACCTTCAT+TGG + chr1_3:3653289-3653308 Msa0097840:CDS 35.0%
!! ATCGTTTATTGCTGGTTCTA+GGG + chr1_3:3653331-3653350 Msa0097840:CDS 35.0%
ATTTCAGATTCTGATTGGGT+TGG - chr1_3:3653362-3653381 None:intergenic 35.0%
! ATCTGAAATTTGTGGGTATC+AGG + chr1_3:3653373-3653392 Msa0097840:intron 35.0%
! AAAATGGGTCTTTCTGAAGA+TGG + chr1_3:3653416-3653435 Msa0097840:CDS 35.0%
! GTCAATCTTTTGGATCCTAA+TGG + chr1_3:3653446-3653465 Msa0097840:CDS 35.0%
CCCATAAAACAAACATTCAC+AGG - chr1_3:3653521-3653540 None:intergenic 35.0%
! GGGGAAAACTCATTTTGTAT+TGG + chr1_3:3653538-3653557 Msa0097840:CDS 35.0%
TATTGGAGGAGAATGTGTTT+GGG + chr1_3:3653555-3653574 Msa0097840:CDS 35.0%
GTTGGAGATTTATCAGCATT+TGG + chr1_3:3653673-3653692 Msa0097840:CDS 35.0%
ACTACAAAATGCAACCAATG+GGG - chr1_3:3654174-3654193 None:intergenic 35.0%
AGCAATTTGCAGTATACCAA+TGG - chr1_3:3654200-3654219 None:intergenic 35.0%
ATTGAAACTGTCAATGATGC+AGG + chr1_3:3654277-3654296 Msa0097840:intron 35.0%
TTGAAACTGTCAATGATGCA+GGG + chr1_3:3654278-3654297 Msa0097840:intron 35.0%
! GAGTTTAGCATTTTACCTTG+TGG + chr1_3:3654316-3654335 Msa0097840:CDS 35.0%
TTGTGGCTTATGATGACATT+GGG + chr1_3:3654333-3654352 Msa0097840:CDS 35.0%
TACATAGATTCTTCCTCTAG+AGG - chr1_3:3654458-3654477 None:intergenic 35.0%
CTAGAGGAAGAATCTATGTA+TGG + chr1_3:3654458-3654477 Msa0097840:CDS 35.0%
! TTTTCATTGTGTGGTTGAAC+CGG - chr1_3:3654507-3654526 None:intergenic 35.0%
! TGCTCATGATTTTCATTGTG+TGG - chr1_3:3654516-3654535 None:intergenic 35.0%
TTCCTATGTCTGATGTTGAA+GGG + chr1_3:3654537-3654556 Msa0097840:three_prime_UTR 35.0%
CTATTTGTCAGACAATGAAG+TGG + chr1_3:3654580-3654599 Msa0097840:three_prime_UTR 35.0%
! CTTTTGGATTTGGATTCGTT+CGG + chr1_3:3654714-3654733 Msa0097840:three_prime_UTR 35.0%
! TTTTGGATTTGGATTCGTTC+GGG + chr1_3:3654715-3654734 Msa0097840:three_prime_UTR 35.0%
GCTACATGATCAATGTAGAA+GGG - chr1_3:3654802-3654821 None:intergenic 35.0%
AGCTACATGATCAATGTAGA+AGG - chr1_3:3654803-3654822 None:intergenic 35.0%
TTCTACATTGATCATGTAGC+TGG + chr1_3:3654802-3654821 Msa0097840:three_prime_UTR 35.0%
ATACATTGTGCACAATGTAC+AGG - chr1_3:3654834-3654853 None:intergenic 35.0%
ATTATGACCGTTTCCTTAGA+TGG + chr1_3:3654867-3654886 Msa0097840:three_prime_UTR 35.0%
CAAACTACCATCTAAGGAAA+CGG - chr1_3:3654877-3654896 None:intergenic 35.0%
AAGAAGCAAACTACCATCTA+AGG - chr1_3:3654883-3654902 None:intergenic 35.0%
ACAAATAAAAGGTGACTCAC+AGG - chr1_3:3654975-3654994 None:intergenic 35.0%
ATTTGTGACTTCCTTTGGTT+TGG + chr1_3:3654989-3655008 Msa0097840:three_prime_UTR 35.0%
!!! CTTCACCCCATTTTTTGATT+TGG - chr1_3:3653181-3653200 None:intergenic 35.0%
CAAATCAAAAAATGGGGTGA+AGG + chr1_3:3653179-3653198 Msa0097840:CDS 35.0%
CATGAATGGGATAATCTCAT+TGG + chr1_3:3653236-3653255 Msa0097840:CDS 35.0%
!!! GGGATAATCTCATTGGTTTT+TGG + chr1_3:3653243-3653262 Msa0097840:CDS 35.0%
TGTGATTGAATCACCTTCAT+TGG + chr1_3:3653289-3653308 Msa0097840:CDS 35.0%
!! ATCGTTTATTGCTGGTTCTA+GGG + chr1_3:3653331-3653350 Msa0097840:CDS 35.0%
ATTTCAGATTCTGATTGGGT+TGG - chr1_3:3653362-3653381 None:intergenic 35.0%
! ATCTGAAATTTGTGGGTATC+AGG + chr1_3:3653373-3653392 Msa0097840:intron 35.0%
! AAAATGGGTCTTTCTGAAGA+TGG + chr1_3:3653416-3653435 Msa0097840:CDS 35.0%
! GTCAATCTTTTGGATCCTAA+TGG + chr1_3:3653446-3653465 Msa0097840:CDS 35.0%
CCCATAAAACAAACATTCAC+AGG - chr1_3:3653521-3653540 None:intergenic 35.0%
! GGGGAAAACTCATTTTGTAT+TGG + chr1_3:3653538-3653557 Msa0097840:CDS 35.0%
TATTGGAGGAGAATGTGTTT+GGG + chr1_3:3653555-3653574 Msa0097840:CDS 35.0%
GTTGGAGATTTATCAGCATT+TGG + chr1_3:3653673-3653692 Msa0097840:CDS 35.0%
ACTACAAAATGCAACCAATG+GGG - chr1_3:3654174-3654193 None:intergenic 35.0%
AGCAATTTGCAGTATACCAA+TGG - chr1_3:3654200-3654219 None:intergenic 35.0%
ATTGAAACTGTCAATGATGC+AGG + chr1_3:3654277-3654296 Msa0097840:intron 35.0%
TTGAAACTGTCAATGATGCA+GGG + chr1_3:3654278-3654297 Msa0097840:intron 35.0%
! GAGTTTAGCATTTTACCTTG+TGG + chr1_3:3654316-3654335 Msa0097840:CDS 35.0%
TTGTGGCTTATGATGACATT+GGG + chr1_3:3654333-3654352 Msa0097840:CDS 35.0%
TACATAGATTCTTCCTCTAG+AGG - chr1_3:3654458-3654477 None:intergenic 35.0%
CTAGAGGAAGAATCTATGTA+TGG + chr1_3:3654458-3654477 Msa0097840:CDS 35.0%
! TTTTCATTGTGTGGTTGAAC+CGG - chr1_3:3654507-3654526 None:intergenic 35.0%
! TGCTCATGATTTTCATTGTG+TGG - chr1_3:3654516-3654535 None:intergenic 35.0%
TTCCTATGTCTGATGTTGAA+GGG + chr1_3:3654537-3654556 Msa0097840:three_prime_UTR 35.0%
CTATTTGTCAGACAATGAAG+TGG + chr1_3:3654580-3654599 Msa0097840:three_prime_UTR 35.0%
! CTTTTGGATTTGGATTCGTT+CGG + chr1_3:3654714-3654733 Msa0097840:three_prime_UTR 35.0%
! TTTTGGATTTGGATTCGTTC+GGG + chr1_3:3654715-3654734 Msa0097840:three_prime_UTR 35.0%
GCTACATGATCAATGTAGAA+GGG - chr1_3:3654802-3654821 None:intergenic 35.0%
AGCTACATGATCAATGTAGA+AGG - chr1_3:3654803-3654822 None:intergenic 35.0%
TTCTACATTGATCATGTAGC+TGG + chr1_3:3654802-3654821 Msa0097840:three_prime_UTR 35.0%
ATACATTGTGCACAATGTAC+AGG - chr1_3:3654834-3654853 None:intergenic 35.0%
ATTATGACCGTTTCCTTAGA+TGG + chr1_3:3654867-3654886 Msa0097840:three_prime_UTR 35.0%
CAAACTACCATCTAAGGAAA+CGG - chr1_3:3654877-3654896 None:intergenic 35.0%
AAGAAGCAAACTACCATCTA+AGG - chr1_3:3654883-3654902 None:intergenic 35.0%
ACAAATAAAAGGTGACTCAC+AGG - chr1_3:3654975-3654994 None:intergenic 35.0%
ATTTGTGACTTCCTTTGGTT+TGG + chr1_3:3654989-3655008 Msa0097840:three_prime_UTR 35.0%
AAGCCAAAGCTTTGCATCAT+CGG - chr1_3:3653126-3653145 None:intergenic 40.0%
TTTCCCTTTGTGATCGAAGA+TGG + chr1_3:3653144-3653163 Msa0097840:CDS 40.0%
TTCCCTTTGTGATCGAAGAT+GGG + chr1_3:3653145-3653164 Msa0097840:CDS 40.0%
!!! ATTGGTTTTTGGAGGAGAAG+TGG + chr1_3:3653254-3653273 Msa0097840:CDS 40.0%
!! CATCGTTTATTGCTGGTTCT+AGG + chr1_3:3653330-3653349 Msa0097840:CDS 40.0%
TTGTGGGTATCAGGTGAAAA+AGG + chr1_3:3653382-3653401 Msa0097840:intron 40.0%
TTCAAATCAGCTCGACCATT+AGG - chr1_3:3653464-3653483 None:intergenic 40.0%
GTATTGGAGGAGAATGTGTT+TGG + chr1_3:3653554-3653573 Msa0097840:CDS 40.0%
!! TTTGGGAGGAGTTCAAGTTT+TGG + chr1_3:3653572-3653591 Msa0097840:CDS 40.0%
!! TTGGGAGGAGTTCAAGTTTT+GGG + chr1_3:3653573-3653592 Msa0097840:CDS 40.0%
!!! TCAAGTTTTGGGAATAACGG+CGG + chr1_3:3653584-3653603 Msa0097840:CDS 40.0%
TAAATCTCCAACATCCGATC+AGG - chr1_3:3653665-3653684 None:intergenic 40.0%
TTTATCAGCATTTGGCGAAC+AGG + chr1_3:3653681-3653700 Msa0097840:CDS 40.0%
TTATCAGCATTTGGCGAACA+GGG + chr1_3:3653682-3653701 Msa0097840:CDS 40.0%
ACAACCTTGACAAAATGCTC+AGG - chr1_3:3653782-3653801 None:intergenic 40.0%
!! TAACTTGATAGCTTGGTGCT+TGG + chr1_3:3653907-3653926 Msa0097840:intron 40.0%
TATCAACATGACTCCGACTA+AGG - chr1_3:3654124-3654143 None:intergenic 40.0%
CTACAAAATGCAACCAATGG+GGG - chr1_3:3654173-3654192 None:intergenic 40.0%
CAATGTCATCATAAGCCACA+AGG - chr1_3:3654334-3654353 None:intergenic 40.0%
CTTGTGGCTTATGATGACAT+TGG + chr1_3:3654332-3654351 Msa0097840:CDS 40.0%
TGTGGCTTATGATGACATTG+GGG + chr1_3:3654334-3654353 Msa0097840:CDS 40.0%
TAAGTAGAAAACCGTTCAGG+AGG - chr1_3:3654386-3654405 None:intergenic 40.0%
GCATAAGTAGAAAACCGTTC+AGG - chr1_3:3654389-3654408 None:intergenic 40.0%
AGCTTCCAGAAATGTAGCAT+TGG - chr1_3:3654429-3654448 None:intergenic 40.0%
! GATTCTTCCTCTAGAGGAAA+GGG - chr1_3:3654452-3654471 None:intergenic 40.0%
! AGATTCTTCCTCTAGAGGAA+AGG - chr1_3:3654453-3654472 None:intergenic 40.0%
GTTCCTATGTCTGATGTTGA+AGG + chr1_3:3654536-3654555 Msa0097840:three_prime_UTR 40.0%
TCCTATGTCTGATGTTGAAG+GGG + chr1_3:3654538-3654557 Msa0097840:three_prime_UTR 40.0%
TTAGTTATTCCTGACCTTGC+TGG + chr1_3:3654638-3654657 Msa0097840:three_prime_UTR 40.0%
!! CAAATCCAAAAGTACCATCC+TGG - chr1_3:3654706-3654725 None:intergenic 40.0%
! CAGGATGGTACTTTTGGATT+TGG + chr1_3:3654704-3654723 Msa0097840:three_prime_UTR 40.0%
TAAAAGGTGACTCACAGGTA+AGG - chr1_3:3654970-3654989 None:intergenic 40.0%
!! ACTTCCTTTGGTTTGGAGTT+TGG + chr1_3:3654996-3655015 Msa0097840:three_prime_UTR 40.0%
AAGTCCAAACTCCAAACCAA+AGG - chr1_3:3655003-3655022 None:intergenic 40.0%
AAGCCAAAGCTTTGCATCAT+CGG - chr1_3:3653126-3653145 None:intergenic 40.0%
TTTCCCTTTGTGATCGAAGA+TGG + chr1_3:3653144-3653163 Msa0097840:CDS 40.0%
TTCCCTTTGTGATCGAAGAT+GGG + chr1_3:3653145-3653164 Msa0097840:CDS 40.0%
!!! ATTGGTTTTTGGAGGAGAAG+TGG + chr1_3:3653254-3653273 Msa0097840:CDS 40.0%
!! CATCGTTTATTGCTGGTTCT+AGG + chr1_3:3653330-3653349 Msa0097840:CDS 40.0%
TTGTGGGTATCAGGTGAAAA+AGG + chr1_3:3653382-3653401 Msa0097840:intron 40.0%
TTCAAATCAGCTCGACCATT+AGG - chr1_3:3653464-3653483 None:intergenic 40.0%
GTATTGGAGGAGAATGTGTT+TGG + chr1_3:3653554-3653573 Msa0097840:CDS 40.0%
!! TTTGGGAGGAGTTCAAGTTT+TGG + chr1_3:3653572-3653591 Msa0097840:CDS 40.0%
!! TTGGGAGGAGTTCAAGTTTT+GGG + chr1_3:3653573-3653592 Msa0097840:CDS 40.0%
!!! TCAAGTTTTGGGAATAACGG+CGG + chr1_3:3653584-3653603 Msa0097840:CDS 40.0%
TAAATCTCCAACATCCGATC+AGG - chr1_3:3653665-3653684 None:intergenic 40.0%
TTTATCAGCATTTGGCGAAC+AGG + chr1_3:3653681-3653700 Msa0097840:CDS 40.0%
TTATCAGCATTTGGCGAACA+GGG + chr1_3:3653682-3653701 Msa0097840:CDS 40.0%
ACAACCTTGACAAAATGCTC+AGG - chr1_3:3653782-3653801 None:intergenic 40.0%
!! TAACTTGATAGCTTGGTGCT+TGG + chr1_3:3653907-3653926 Msa0097840:intron 40.0%
TATCAACATGACTCCGACTA+AGG - chr1_3:3654124-3654143 None:intergenic 40.0%
CTACAAAATGCAACCAATGG+GGG - chr1_3:3654173-3654192 None:intergenic 40.0%
CAATGTCATCATAAGCCACA+AGG - chr1_3:3654334-3654353 None:intergenic 40.0%
CTTGTGGCTTATGATGACAT+TGG + chr1_3:3654332-3654351 Msa0097840:CDS 40.0%
TGTGGCTTATGATGACATTG+GGG + chr1_3:3654334-3654353 Msa0097840:CDS 40.0%
TAAGTAGAAAACCGTTCAGG+AGG - chr1_3:3654386-3654405 None:intergenic 40.0%
GCATAAGTAGAAAACCGTTC+AGG - chr1_3:3654389-3654408 None:intergenic 40.0%
AGCTTCCAGAAATGTAGCAT+TGG - chr1_3:3654429-3654448 None:intergenic 40.0%
! GATTCTTCCTCTAGAGGAAA+GGG - chr1_3:3654452-3654471 None:intergenic 40.0%
! AGATTCTTCCTCTAGAGGAA+AGG - chr1_3:3654453-3654472 None:intergenic 40.0%
GTTCCTATGTCTGATGTTGA+AGG + chr1_3:3654536-3654555 Msa0097840:three_prime_UTR 40.0%
TCCTATGTCTGATGTTGAAG+GGG + chr1_3:3654538-3654557 Msa0097840:three_prime_UTR 40.0%
TTAGTTATTCCTGACCTTGC+TGG + chr1_3:3654638-3654657 Msa0097840:three_prime_UTR 40.0%
!! CAAATCCAAAAGTACCATCC+TGG - chr1_3:3654706-3654725 None:intergenic 40.0%
! CAGGATGGTACTTTTGGATT+TGG + chr1_3:3654704-3654723 Msa0097840:three_prime_UTR 40.0%
TAAAAGGTGACTCACAGGTA+AGG - chr1_3:3654970-3654989 None:intergenic 40.0%
!! ACTTCCTTTGGTTTGGAGTT+TGG + chr1_3:3654996-3655015 Msa0097840:three_prime_UTR 40.0%
AAGTCCAAACTCCAAACCAA+AGG - chr1_3:3655003-3655022 None:intergenic 40.0%
GTTCCGATGATGCAAAGCTT+TGG + chr1_3:3653120-3653139 Msa0097840:CDS 45.0%
TCCCTTTGTGATCGAAGATG+GGG + chr1_3:3653146-3653165 Msa0097840:CDS 45.0%
ACCCCATCTTCGATCACAAA+GGG - chr1_3:3653150-3653169 None:intergenic 45.0%
AACCCCATCTTCGATCACAA+AGG - chr1_3:3653151-3653170 None:intergenic 45.0%
GATTCAATCACAGCACTACC+AGG - chr1_3:3653281-3653300 None:intergenic 45.0%
TGGGGTTCATCGTTTATTGC+TGG + chr1_3:3653323-3653342 Msa0097840:CDS 45.0%
GATGGGATTGGGATTGATAG+TGG + chr1_3:3653632-3653651 Msa0097840:CDS 45.0%
GAGGAAGGAGAAAGAAAGGA+TGG + chr1_3:3653739-3653758 Msa0097840:CDS 45.0%
AGGAGAAAGAAAGGATGGCT+AGG + chr1_3:3653744-3653763 Msa0097840:CDS 45.0%
AGAAAGAAAGGATGGCTAGG+CGG + chr1_3:3653747-3653766 Msa0097840:CDS 45.0%
ACCTTCCAAAGACCTTGCAA+AGG - chr1_3:3653830-3653849 None:intergenic 45.0%
GTGGCTTATGATGACATTGG+GGG + chr1_3:3654335-3654354 Msa0097840:CDS 45.0%
TGGCTTATGATGACATTGGG+GGG + chr1_3:3654336-3654355 Msa0097840:CDS 45.0%
! ACGGTTTTCTACTTATGCCC+CGG + chr1_3:3654391-3654410 Msa0097840:CDS 45.0%
GACGTCCAATGCTACATTTC+TGG + chr1_3:3654421-3654440 Msa0097840:CDS 45.0%
ACCCCTTCAACATCAGACAT+AGG - chr1_3:3654542-3654561 None:intergenic 45.0%
!! TAGGATTTGTTGCTCCAGCA+AGG - chr1_3:3654655-3654674 None:intergenic 45.0%
TTGCTGGAGCAACAAATCCT+AGG + chr1_3:3654654-3654673 Msa0097840:three_prime_UTR 45.0%
!! AACAAATCCTAGGAGTGCTG+AGG + chr1_3:3654664-3654683 Msa0097840:three_prime_UTR 45.0%
!! ACAAATCCTAGGAGTGCTGA+GGG + chr1_3:3654665-3654684 Msa0097840:three_prime_UTR 45.0%
! CAGTACCAGGATGGTACTTT+TGG + chr1_3:3654698-3654717 Msa0097840:three_prime_UTR 45.0%
GTTCCGATGATGCAAAGCTT+TGG + chr1_3:3653120-3653139 Msa0097840:CDS 45.0%
TCCCTTTGTGATCGAAGATG+GGG + chr1_3:3653146-3653165 Msa0097840:CDS 45.0%
ACCCCATCTTCGATCACAAA+GGG - chr1_3:3653150-3653169 None:intergenic 45.0%
AACCCCATCTTCGATCACAA+AGG - chr1_3:3653151-3653170 None:intergenic 45.0%
GATTCAATCACAGCACTACC+AGG - chr1_3:3653281-3653300 None:intergenic 45.0%
TGGGGTTCATCGTTTATTGC+TGG + chr1_3:3653323-3653342 Msa0097840:CDS 45.0%
GATGGGATTGGGATTGATAG+TGG + chr1_3:3653632-3653651 Msa0097840:CDS 45.0%
GAGGAAGGAGAAAGAAAGGA+TGG + chr1_3:3653739-3653758 Msa0097840:CDS 45.0%
AGGAGAAAGAAAGGATGGCT+AGG + chr1_3:3653744-3653763 Msa0097840:CDS 45.0%
AGAAAGAAAGGATGGCTAGG+CGG + chr1_3:3653747-3653766 Msa0097840:CDS 45.0%
ACCTTCCAAAGACCTTGCAA+AGG - chr1_3:3653830-3653849 None:intergenic 45.0%
GTGGCTTATGATGACATTGG+GGG + chr1_3:3654335-3654354 Msa0097840:CDS 45.0%
TGGCTTATGATGACATTGGG+GGG + chr1_3:3654336-3654355 Msa0097840:CDS 45.0%
! ACGGTTTTCTACTTATGCCC+CGG + chr1_3:3654391-3654410 Msa0097840:CDS 45.0%
GACGTCCAATGCTACATTTC+TGG + chr1_3:3654421-3654440 Msa0097840:CDS 45.0%
ACCCCTTCAACATCAGACAT+AGG - chr1_3:3654542-3654561 None:intergenic 45.0%
!! TAGGATTTGTTGCTCCAGCA+AGG - chr1_3:3654655-3654674 None:intergenic 45.0%
TTGCTGGAGCAACAAATCCT+AGG + chr1_3:3654654-3654673 Msa0097840:three_prime_UTR 45.0%
!! AACAAATCCTAGGAGTGCTG+AGG + chr1_3:3654664-3654683 Msa0097840:three_prime_UTR 45.0%
!! ACAAATCCTAGGAGTGCTGA+GGG + chr1_3:3654665-3654684 Msa0097840:three_prime_UTR 45.0%
! CAGTACCAGGATGGTACTTT+TGG + chr1_3:3654698-3654717 Msa0097840:three_prime_UTR 45.0%
!! TTTTGGAGGAGAAGTGGTCC+TGG + chr1_3:3653260-3653279 Msa0097840:CDS 50.0%
TGGAGGAGAATGTGTTTGGG+AGG + chr1_3:3653558-3653577 Msa0097840:CDS 50.0%
!! TTTTGGGAATAACGGCGGTG+AGG + chr1_3:3653589-3653608 Msa0097840:CDS 50.0%
AATAACGGCGGTGAGGATTG+TGG + chr1_3:3653596-3653615 Msa0097840:CDS 50.0%
!!! GGTGAGGATTGTGGTTTTGG+TGG + chr1_3:3653605-3653624 Msa0097840:intron 50.0%
!!! GGATTGTGGTTTTGGTGGAG+AGG + chr1_3:3653610-3653629 Msa0097840:intron 50.0%
!!! TGTGGTTTTGGTGGAGAGGA+TGG + chr1_3:3653614-3653633 Msa0097840:intron 50.0%
!!! GTGGTTTTGGTGGAGAGGAT+GGG + chr1_3:3653615-3653634 Msa0097840:intron 50.0%
TTTGGTGGAGAGGATGGGAT+TGG + chr1_3:3653620-3653639 Msa0097840:intron 50.0%
TTGGTGGAGAGGATGGGATT+GGG + chr1_3:3653621-3653640 Msa0097840:intron 50.0%
!! ATAGTGGATCTCCGCCTGAT+CGG + chr1_3:3653648-3653667 Msa0097840:CDS 50.0%
ATCTCCAACATCCGATCAGG+CGG - chr1_3:3653662-3653681 None:intergenic 50.0%
GTCCTGGAAGCGATAGATCA+AGG + chr1_3:3653708-3653727 Msa0097840:CDS 50.0%
CTCCTTGATCTATCGCTTCC+AGG - chr1_3:3653713-3653732 None:intergenic 50.0%
CTGGAAGCGATAGATCAAGG+AGG + chr1_3:3653711-3653730 Msa0097840:CDS 50.0%
AGCGGAGGAAGGAGAAAGAA+AGG + chr1_3:3653735-3653754 Msa0097840:CDS 50.0%
AAAGGATGGCTAGGCGGAAA+TGG + chr1_3:3653753-3653772 Msa0097840:CDS 50.0%
AAGGATGGCTAGGCGGAAAT+GGG + chr1_3:3653754-3653773 Msa0097840:CDS 50.0%
! GGAGCCTGAGCATTTTGTCA+AGG + chr1_3:3653775-3653794 Msa0097840:CDS 50.0%
GCCTTTGCAAGGTCTTTGGA+AGG + chr1_3:3653826-3653845 Msa0097840:CDS 50.0%
AAATGCAACCAATGGGGGTG+TGG - chr1_3:3654168-3654187 None:intergenic 50.0%
! CTACTTATGCCCCGGTTTTC+TGG + chr1_3:3654399-3654418 Msa0097840:CDS 50.0%
ATTGGACGTCCAGAAAACCG+GGG - chr1_3:3654411-3654430 None:intergenic 50.0%
CATTGGACGTCCAGAAAACC+GGG - chr1_3:3654412-3654431 None:intergenic 50.0%
GCATTGGACGTCCAGAAAAC+CGG - chr1_3:3654413-3654432 None:intergenic 50.0%
CGCGTTCATCTCATTCTCAC+CGG + chr1_3:3654485-3654504 Msa0097840:CDS 50.0%
TTTGTTGCTCCAGCAAGGTC+AGG - chr1_3:3654650-3654669 None:intergenic 50.0%
AGGATTTGGCAGTACCAGGA+TGG + chr1_3:3654689-3654708 Msa0097840:three_prime_UTR 50.0%
TTAGACAGCCAGTGTCAAGC+AGG + chr1_3:3654913-3654932 Msa0097840:three_prime_UTR 50.0%
! CGGAACAGAGTGTTCCGAAT+TGG - chr1_3:3653106-3653125 None:intergenic 50.0%
!! TTTTGGAGGAGAAGTGGTCC+TGG + chr1_3:3653260-3653279 Msa0097840:CDS 50.0%
TGGAGGAGAATGTGTTTGGG+AGG + chr1_3:3653558-3653577 Msa0097840:CDS 50.0%
!! TTTTGGGAATAACGGCGGTG+AGG + chr1_3:3653589-3653608 Msa0097840:CDS 50.0%
AATAACGGCGGTGAGGATTG+TGG + chr1_3:3653596-3653615 Msa0097840:CDS 50.0%
!!! GGTGAGGATTGTGGTTTTGG+TGG + chr1_3:3653605-3653624 Msa0097840:intron 50.0%
!!! GGATTGTGGTTTTGGTGGAG+AGG + chr1_3:3653610-3653629 Msa0097840:intron 50.0%
!!! TGTGGTTTTGGTGGAGAGGA+TGG + chr1_3:3653614-3653633 Msa0097840:intron 50.0%
!!! GTGGTTTTGGTGGAGAGGAT+GGG + chr1_3:3653615-3653634 Msa0097840:intron 50.0%
TTTGGTGGAGAGGATGGGAT+TGG + chr1_3:3653620-3653639 Msa0097840:intron 50.0%
TTGGTGGAGAGGATGGGATT+GGG + chr1_3:3653621-3653640 Msa0097840:intron 50.0%
!! ATAGTGGATCTCCGCCTGAT+CGG + chr1_3:3653648-3653667 Msa0097840:CDS 50.0%
ATCTCCAACATCCGATCAGG+CGG - chr1_3:3653662-3653681 None:intergenic 50.0%
GTCCTGGAAGCGATAGATCA+AGG + chr1_3:3653708-3653727 Msa0097840:CDS 50.0%
CTCCTTGATCTATCGCTTCC+AGG - chr1_3:3653713-3653732 None:intergenic 50.0%
CTGGAAGCGATAGATCAAGG+AGG + chr1_3:3653711-3653730 Msa0097840:CDS 50.0%
AGCGGAGGAAGGAGAAAGAA+AGG + chr1_3:3653735-3653754 Msa0097840:CDS 50.0%
AAAGGATGGCTAGGCGGAAA+TGG + chr1_3:3653753-3653772 Msa0097840:CDS 50.0%
AAGGATGGCTAGGCGGAAAT+GGG + chr1_3:3653754-3653773 Msa0097840:CDS 50.0%
! GGAGCCTGAGCATTTTGTCA+AGG + chr1_3:3653775-3653794 Msa0097840:CDS 50.0%
GCCTTTGCAAGGTCTTTGGA+AGG + chr1_3:3653826-3653845 Msa0097840:CDS 50.0%
AAATGCAACCAATGGGGGTG+TGG - chr1_3:3654168-3654187 None:intergenic 50.0%
! CTACTTATGCCCCGGTTTTC+TGG + chr1_3:3654399-3654418 Msa0097840:CDS 50.0%
ATTGGACGTCCAGAAAACCG+GGG - chr1_3:3654411-3654430 None:intergenic 50.0%
CATTGGACGTCCAGAAAACC+GGG - chr1_3:3654412-3654431 None:intergenic 50.0%
GCATTGGACGTCCAGAAAAC+CGG - chr1_3:3654413-3654432 None:intergenic 50.0%
CGCGTTCATCTCATTCTCAC+CGG + chr1_3:3654485-3654504 Msa0097840:CDS 50.0%
TTTGTTGCTCCAGCAAGGTC+AGG - chr1_3:3654650-3654669 None:intergenic 50.0%
AGGATTTGGCAGTACCAGGA+TGG + chr1_3:3654689-3654708 Msa0097840:three_prime_UTR 50.0%
TTAGACAGCCAGTGTCAAGC+AGG + chr1_3:3654913-3654932 Msa0097840:three_prime_UTR 50.0%
! GGCGGTGAGGATTGTGGTTT+TGG + chr1_3:3653602-3653621 Msa0097840:intron 55.0%
ATCTCCGCCTGATCGGATGT+TGG + chr1_3:3653655-3653674 Msa0097840:CDS 55.0%
!! TTGGCGAACAGGGTTAGTCC+TGG + chr1_3:3653692-3653711 Msa0097840:CDS 55.0%
GCGATAGATCAAGGAGGCAG+CGG + chr1_3:3653717-3653736 Msa0097840:CDS 55.0%
ATAGATCAAGGAGGCAGCGG+AGG + chr1_3:3653720-3653739 Msa0097840:CDS 55.0%
ATGCCGATGCACGCCTTAGT+CGG + chr1_3:3654108-3654127 Msa0097840:intron 55.0%
ACTCCGACTAAGGCGTGCAT+CGG - chr1_3:3654114-3654133 None:intergenic 55.0%
ATCTGTCTCCACACCCCCAT+TGG + chr1_3:3654157-3654176 Msa0097840:intron 55.0%
TTGGGGGGATTGCTTGTCGA+CGG + chr1_3:3654351-3654370 Msa0097840:CDS 55.0%
GGATTGCTTGTCGACGGCTT+GGG + chr1_3:3654357-3654376 Msa0097840:CDS 55.0%
GATTGCTTGTCGACGGCTTG+GGG + chr1_3:3654358-3654377 Msa0097840:CDS 55.0%
GGAAGCTCCCTTTCCTCTAG+AGG + chr1_3:3654442-3654461 Msa0097840:CDS 55.0%
!! ATCCTAGGAGTGCTGAGGGA+AGG + chr1_3:3654669-3654688 Msa0097840:three_prime_UTR 55.0%
ATCCTTCCCTCAGCACTCCT+AGG - chr1_3:3654674-3654693 None:intergenic 55.0%
!! GGAGTGCTGAGGGAAGGATT+TGG + chr1_3:3654675-3654694 Msa0097840:three_prime_UTR 55.0%
GGGAAGGATTTGGCAGTACC+AGG + chr1_3:3654685-3654704 Msa0097840:three_prime_UTR 55.0%
CATCCACGATGCAGCCATCA+CGG - chr1_3:3654772-3654791 None:intergenic 55.0%
AAACAGCGCCTGCTTGACAC+TGG - chr1_3:3654924-3654943 None:intergenic 55.0%
! GGCGGTGAGGATTGTGGTTT+TGG + chr1_3:3653602-3653621 Msa0097840:intron 55.0%
ATCTCCGCCTGATCGGATGT+TGG + chr1_3:3653655-3653674 Msa0097840:CDS 55.0%
!! TTGGCGAACAGGGTTAGTCC+TGG + chr1_3:3653692-3653711 Msa0097840:CDS 55.0%
GCGATAGATCAAGGAGGCAG+CGG + chr1_3:3653717-3653736 Msa0097840:CDS 55.0%
ATAGATCAAGGAGGCAGCGG+AGG + chr1_3:3653720-3653739 Msa0097840:CDS 55.0%
ATGCCGATGCACGCCTTAGT+CGG + chr1_3:3654108-3654127 Msa0097840:intron 55.0%
ACTCCGACTAAGGCGTGCAT+CGG - chr1_3:3654114-3654133 None:intergenic 55.0%
ATCTGTCTCCACACCCCCAT+TGG + chr1_3:3654157-3654176 Msa0097840:intron 55.0%
TTGGGGGGATTGCTTGTCGA+CGG + chr1_3:3654351-3654370 Msa0097840:CDS 55.0%
GGATTGCTTGTCGACGGCTT+GGG + chr1_3:3654357-3654376 Msa0097840:CDS 55.0%
GATTGCTTGTCGACGGCTTG+GGG + chr1_3:3654358-3654377 Msa0097840:CDS 55.0%
GGAAGCTCCCTTTCCTCTAG+AGG + chr1_3:3654442-3654461 Msa0097840:CDS 55.0%
!! ATCCTAGGAGTGCTGAGGGA+AGG + chr1_3:3654669-3654688 Msa0097840:three_prime_UTR 55.0%
ATCCTTCCCTCAGCACTCCT+AGG - chr1_3:3654674-3654693 None:intergenic 55.0%
!! GGAGTGCTGAGGGAAGGATT+TGG + chr1_3:3654675-3654694 Msa0097840:three_prime_UTR 55.0%
GGGAAGGATTTGGCAGTACC+AGG + chr1_3:3654685-3654704 Msa0097840:three_prime_UTR 55.0%
CATCCACGATGCAGCCATCA+CGG - chr1_3:3654772-3654791 None:intergenic 55.0%
AAACAGCGCCTGCTTGACAC+TGG - chr1_3:3654924-3654943 None:intergenic 55.0%
ATCAAGGAGGCAGCGGAGGA+AGG + chr1_3:3653724-3653743 Msa0097840:CDS 60.0%
CGCGGCCTTTGCAAGGTCTT+TGG + chr1_3:3653822-3653841 Msa0097840:CDS 60.0%
GGGATTGCTTGTCGACGGCT+TGG + chr1_3:3654356-3654375 Msa0097840:CDS 60.0%
GGCTTGGGGATCCTCCTGAA+CGG + chr1_3:3654372-3654391 Msa0097840:CDS 60.0%
TGTCCGTGATGGCTGCATCG+TGG + chr1_3:3654766-3654785 Msa0097840:three_prime_UTR 60.0%
ATCAAGGAGGCAGCGGAGGA+AGG + chr1_3:3653724-3653743 Msa0097840:CDS 60.0%
CGCGGCCTTTGCAAGGTCTT+TGG + chr1_3:3653822-3653841 Msa0097840:CDS 60.0%
GGGATTGCTTGTCGACGGCT+TGG + chr1_3:3654356-3654375 Msa0097840:CDS 60.0%
GGCTTGGGGATCCTCCTGAA+CGG + chr1_3:3654372-3654391 Msa0097840:CDS 60.0%
TGTCCGTGATGGCTGCATCG+TGG + chr1_3:3654766-3654785 Msa0097840:three_prime_UTR 60.0%
ATTGCTCGCCGACAGCGTCG+CGG + chr1_3:3653804-3653823 Msa0097840:CDS 65.0%
TGCAAAGGCCGCGACGCTGT+CGG - chr1_3:3653815-3653834 None:intergenic 65.0%
ACAGCGTCGCGGCCTTTGCA+AGG + chr1_3:3653815-3653834 Msa0097840:CDS 65.0%
ATTGCTCGCCGACAGCGTCG+CGG + chr1_3:3653804-3653823 Msa0097840:CDS 65.0%
TGCAAAGGCCGCGACGCTGT+CGG - chr1_3:3653815-3653834 None:intergenic 65.0%
ACAGCGTCGCGGCCTTTGCA+AGG + chr1_3:3653815-3653834 Msa0097840:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3653104 3655161 3653104 ID=Msa0097840;Name=Msa0097840
chr1_3 mRNA 3653104 3655161 3653104 ID=Msa0097840-mRNA-1;Parent=Msa0097840;Name=Msa0097840-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.33|0.25|1|0|0.25|4|638|304
chr1_3 exon 3653104 3653352 3653104 ID=Msa0097840-mRNA-1:exon:1149;Parent=Msa0097840-mRNA-1
chr1_3 exon 3653395 3653617 3653395 ID=Msa0097840-mRNA-1:exon:1150;Parent=Msa0097840-mRNA-1
chr1_3 exon 3653630 3653847 3653630 ID=Msa0097840-mRNA-1:exon:1151;Parent=Msa0097840-mRNA-1
chr1_3 exon 3654299 3655161 3654299 ID=Msa0097840-mRNA-1:exon:1152;Parent=Msa0097840-mRNA-1
chr1_3 CDS 3653104 3653352 3653104 ID=Msa0097840-mRNA-1:cds;Parent=Msa0097840-mRNA-1
chr1_3 CDS 3653395 3653617 3653395 ID=Msa0097840-mRNA-1:cds;Parent=Msa0097840-mRNA-1
chr1_3 CDS 3653630 3653847 3653630 ID=Msa0097840-mRNA-1:cds;Parent=Msa0097840-mRNA-1
chr1_3 CDS 3654299 3654523 3654299 ID=Msa0097840-mRNA-1:cds;Parent=Msa0097840-mRNA-1
chr1_3 three_prime_UTR 3654524 3655161 3654524 ID=Msa0097840-mRNA-1:three_prime_utr;Parent=Msa0097840-mRNA-1
Gene Sequence

>Msa0097840

CAATTCGGAACACTCTGTTCCGATGATGCAAAGCTTTGGCTTTCCCTTTGTGATCGAAGATGGGGTTCCAAAACCCAAATCAAAAAATGGGGTGAAGGTAAAATTCTCTATAGAAATCTCTATACTGTTCTTCATGAATGGGATAATCTCATTGGTTTTTGGAGGAGAAGTGGTCCTGGTAGTGCTGTGATTGAATCACCTTCATTGGTTTTCTTTGAATGGGGTTCATCGTTTATTGCTGGTTCTAGGGTGAAAAAGGTGCCTTTTTTGAAAATGGGTCTTTCTGAAGATGGACAAATTGTCAATCTTTTGGATCCTAATGGTCGAGCTGATTTGAATTTCAATGATAATGGTAATGGTAGTGAATTGATTCCTGTGAATGTTTGTTTTATGGGGAAAACTCATTTTGTATTGGAGGAGAATGTGTTTGGGAGGAGTTCAAGTTTTGGGAATAACGGCGGTGAGGATTGTGAGGATGGGATTGGGATTGATAGTGGATCTCCGCCTGATCGGATGTTGGAGATTTATCAGCATTTGGCGAACAGGGTTAGTCCTGGAAGCGATAGATCAAGGAGGCAGCGGAGGAAGGAGAAAGAAAGGATGGCTAGGCGGAAATGGGAGCCTGAGCATTTTGTCAAGGTTGTGAATTGCTCGCCGACAGCGTCGCGGCCTTTGCAAGGTCTTTGGAAGGGAATTTGTGCAGATTTGAGTTTAGCATTTTACCTTGTGGCTTATGATGACATTGGGGGGATTGCTTGTCGACGGCTTGGGGATCCTCCTGAACGGTTTTCTACTTATGCCCCGGTTTTCTGGACGTCCAATGCTACATTTCTGGAAGCTCCCTTTCCTCTAGAGGAAGAATCTATGTATGGCAGTCGCGTTCATCTCATTCTCACCGGTTCAACCACACAATGA
Protein sequence

>Msa0097840

QFGTLCSDDAKLWLSLCDRRWGSKTQIKKWGEGKILYRNLYTVLHEWDNLIGFWRRSGPGSAVIESPSLVFFEWGSSFIAGSRVKKVPFLKMGLSEDGQIVNLLDPNGRADLNFNDNGNGSELIPVNVCFMGKTHFVLEENVFGRSSSFGNNGGEDCEDGIGIDSGSPPDRMLEIYQHLANRVSPGSDRSRRQRRKEKERMARRKWEPEHFVKVVNCSPTASRPLQGLWKGICADLSLAFYLVAYDDIGGIACRRLGDPPERFSTYAPVFWTSNATFLEAPFPLEEESMYGSRVHLILTGSTTQ*