Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440930 | sp|Q9SAI5|RL71_ARATH | 51.210 | 248 | 118 | 3 | 1 | 246 | 1 | 247 | 1.47e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440930 | G7L2C7 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 3.31e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006380 | Msa1440930 | 0.819558 | 1.090534e-52 | -8.615850e-47 |
| Msa0020390 | Msa1440930 | 0.802550 | 5.320883e-49 | -8.615850e-47 |
| Msa0026710 | Msa1440930 | 0.816147 | 6.423837e-52 | -8.615850e-47 |
| Msa0032430 | Msa1440930 | 0.804916 | 1.716943e-49 | -8.615850e-47 |
| Msa0033110 | Msa1440930 | 0.800209 | 1.604849e-48 | -8.615850e-47 |
| Msa0059110 | Msa1440930 | 0.821632 | 3.641824e-53 | -8.615850e-47 |
| Msa0071250 | Msa1440930 | 0.800003 | 1.766753e-48 | -8.615850e-47 |
| Msa0072420 | Msa1440930 | 0.859596 | 3.708304e-63 | -8.615850e-47 |
| Msa0090520 | Msa1440930 | 0.831647 | 1.482733e-55 | -8.615850e-47 |
| Msa0090550 | Msa1440930 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa0115400 | Msa1440930 | 0.829365 | 5.362100e-55 | -8.615850e-47 |
| Msa1346840 | Msa1440930 | 0.813702 | 2.238754e-51 | -8.615850e-47 |
| Msa1351540 | Msa1440930 | 0.800669 | 1.293026e-48 | -8.615850e-47 |
| Msa1385720 | Msa1440930 | 0.826990 | 2.003215e-54 | -8.615850e-47 |
| Msa1392780 | Msa1440930 | 0.812554 | 3.998619e-51 | -8.615850e-47 |
| Msa1393570 | Msa1440930 | 0.847044 | 1.483206e-59 | -8.615850e-47 |
| Msa1394290 | Msa1440930 | 0.809098 | 2.237705e-50 | -8.615850e-47 |
| Msa1419690 | Msa1440930 | 0.814224 | 1.718034e-51 | -8.615850e-47 |
| Msa1434090 | Msa1440930 | 0.842373 | 2.691045e-58 | -8.615850e-47 |
| Msa1435390 | Msa1440930 | 0.980101 | 1.902670e-149 | -8.615850e-47 |
| Msa1437270 | Msa1440930 | 0.803828 | 2.893074e-49 | -8.615850e-47 |
| Msa1440930 | Msa1454680 | 0.808840 | 2.541899e-50 | -8.615850e-47 |
| Msa1440930 | Msa1458770 | 0.810576 | 1.075975e-50 | -8.615850e-47 |
| Msa0617170 | Msa1440930 | 0.813486 | 2.498005e-51 | -8.615850e-47 |
| Msa0634890 | Msa1440930 | 0.809710 | 1.654070e-50 | -8.615850e-47 |
| Msa0649020 | Msa1440930 | 0.804271 | 2.340619e-49 | -8.615850e-47 |
| Msa0649050 | Msa1440930 | 0.807905 | 4.022449e-50 | -8.615850e-47 |
| Msa0672550 | Msa1440930 | 0.822723 | 2.033987e-53 | -8.615850e-47 |
| Msa0682680 | Msa1440930 | 0.813092 | 3.049581e-51 | -8.615850e-47 |
| Msa0698540 | Msa1440930 | 0.812438 | 4.239740e-51 | -8.615850e-47 |
| Msa0707250 | Msa1440930 | 0.836343 | 9.891522e-57 | -8.615850e-47 |
| Msa0741440 | Msa1440930 | 0.816974 | 4.192232e-52 | -8.615850e-47 |
| Msa0765080 | Msa1440930 | 0.831888 | 1.293214e-55 | -8.615850e-47 |
| Msa0765910 | Msa1440930 | 0.804665 | 1.936665e-49 | -8.615850e-47 |
| Msa0796580 | Msa1440930 | -0.812248 | 4.665174e-51 | -8.615850e-47 |
| Msa0822500 | Msa1440930 | 0.821957 | 3.062911e-53 | -8.615850e-47 |
| Msa0831110 | Msa1440930 | 0.811149 | 8.086617e-51 | -8.615850e-47 |
| Msa0120880 | Msa1440930 | 0.844756 | 6.208054e-59 | -8.615850e-47 |
| Msa0137990 | Msa1440930 | 0.830726 | 2.496358e-55 | -8.615850e-47 |
| Msa0148080 | Msa1440930 | 0.821077 | 4.891913e-53 | -8.615850e-47 |
| Msa0168800 | Msa1440930 | 0.817665 | 2.931687e-52 | -8.615850e-47 |
| Msa0172070 | Msa1440930 | 0.806813 | 6.854445e-50 | -8.615850e-47 |
| Msa0178950 | Msa1440930 | 0.801034 | 1.089243e-48 | -8.615850e-47 |
| Msa0183900 | Msa1440930 | 0.815601 | 8.501786e-52 | -8.615850e-47 |
| Msa0204960 | Msa1440930 | 0.855768 | 5.053545e-62 | -8.615850e-47 |
| Msa0211150 | Msa1440930 | 0.803772 | 2.972519e-49 | -8.615850e-47 |
| Msa0214550 | Msa1440930 | 0.816623 | 5.027569e-52 | -8.615850e-47 |
| Msa0220400 | Msa1440930 | -0.810558 | 1.086135e-50 | -8.615850e-47 |
| Msa1225860 | Msa1440930 | -0.810631 | 1.047365e-50 | -8.615850e-47 |
| Msa1231840 | Msa1440930 | 0.830402 | 2.997643e-55 | -8.615850e-47 |
| Msa1254730 | Msa1440930 | 0.840217 | 9.929680e-58 | -8.615850e-47 |
| Msa1271130 | Msa1440930 | 0.815146 | 1.073629e-51 | -8.615850e-47 |
| Msa1275480 | Msa1440930 | -0.802512 | 5.416210e-49 | -8.615850e-47 |
| Msa1275680 | Msa1440930 | 0.836247 | 1.046707e-56 | -8.615850e-47 |
| Msa1294820 | Msa1440930 | 0.809172 | 2.157893e-50 | -8.615850e-47 |
| Msa1305810 | Msa1440930 | 0.805683 | 1.185637e-49 | -8.615850e-47 |
| Msa1312520 | Msa1440930 | 0.803438 | 3.486290e-49 | -8.615850e-47 |
| Msa1315890 | Msa1440930 | 0.811372 | 7.234381e-51 | -8.615850e-47 |
| Msa1325410 | Msa1440930 | -0.809327 | 1.998791e-50 | -8.615850e-47 |
| Msa1329750 | Msa1440930 | 0.804464 | 2.133094e-49 | -8.615850e-47 |
| Msa1331050 | Msa1440930 | -0.820007 | 8.609179e-53 | -8.615850e-47 |
| Msa1332590 | Msa1440930 | 0.809672 | 1.685242e-50 | -8.615850e-47 |
| Msa0385500 | Msa1440930 | 0.814461 | 1.523005e-51 | -8.615850e-47 |
| Msa0387820 | Msa1440930 | 0.808288 | 3.333842e-50 | -8.615850e-47 |
| Msa0437020 | Msa1440930 | 0.824375 | 8.351589e-54 | -8.615850e-47 |
| Msa0445330 | Msa1440930 | 0.811785 | 5.883127e-51 | -8.615850e-47 |
| Msa0450400 | Msa1440930 | -0.829521 | 4.913511e-55 | -8.615850e-47 |
| Msa0450480 | Msa1440930 | 0.810466 | 1.136953e-50 | -8.615850e-47 |
| Msa1006840 | Msa1440930 | 0.811571 | 6.548975e-51 | -8.615850e-47 |
| Msa1021520 | Msa1440930 | 0.965685 | 6.314317e-125 | -8.615850e-47 |
| Msa1031660 | Msa1440930 | 0.824051 | 9.949750e-54 | -8.615850e-47 |
| Msa1051880 | Msa1440930 | 0.803886 | 2.814000e-49 | -8.615850e-47 |
| Msa1060260 | Msa1440930 | 0.901490 | 2.541495e-78 | -8.615850e-47 |
| Msa1070720 | Msa1440930 | 0.807122 | 5.898079e-50 | -8.615850e-47 |
| Msa1081930 | Msa1440930 | 0.800450 | 1.432860e-48 | -8.615850e-47 |
| Msa1089450 | Msa1440930 | 0.822861 | 1.888388e-53 | -8.615850e-47 |
| Msa1104560 | Msa1440930 | 0.803765 | 2.981516e-49 | -8.615850e-47 |
| Msa0240900 | Msa1440930 | 0.820418 | 6.932566e-53 | -8.615850e-47 |
| Msa0257490 | Msa1440930 | 0.820993 | 5.112353e-53 | -8.615850e-47 |
| Msa0258390 | Msa1440930 | 0.868144 | 8.123356e-66 | -8.615850e-47 |
| Msa0274310 | Msa1440930 | -0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa0277010 | Msa1440930 | -0.815594 | 8.533778e-52 | -8.615850e-47 |
| Msa0281530 | Msa1440930 | 0.856673 | 2.745076e-62 | -8.615850e-47 |
| Msa0295460 | Msa1440930 | -0.846921 | 1.603242e-59 | -8.615850e-47 |
| Msa0297610 | Msa1440930 | 0.864129 | 1.518720e-64 | -8.615850e-47 |
| Msa0305410 | Msa1440930 | 0.806581 | 7.672267e-50 | -8.615850e-47 |
| Msa0317970 | Msa1440930 | 0.842366 | 2.701407e-58 | -8.615850e-47 |
| Msa0320590 | Msa1440930 | 0.818248 | 2.164556e-52 | -8.615850e-47 |
| Msa0326480 | Msa1440930 | 0.835365 | 1.750762e-56 | -8.615850e-47 |
| Msa0335730 | Msa1440930 | 0.844065 | 9.521239e-59 | -8.615850e-47 |
| Msa0340380 | Msa1440930 | 0.804784 | 1.828963e-49 | -8.615850e-47 |
| Msa0343500 | Msa1440930 | 0.870011 | 2.012875e-66 | -8.615850e-47 |
| Msa0345350 | Msa1440930 | 0.832813 | 7.629410e-56 | -8.615850e-47 |
| Msa0357900 | Msa1440930 | 0.849744 | 2.655999e-60 | -8.615850e-47 |
| Msa1109680 | Msa1440930 | 0.842451 | 2.565606e-58 | -8.615850e-47 |
| Msa1123770 | Msa1440930 | 0.826190 | 3.108025e-54 | -8.615850e-47 |
| Msa1135890 | Msa1440930 | 0.803056 | 4.181793e-49 | -8.615850e-47 |
| Msa1155170 | Msa1440930 | -0.812151 | 4.898087e-51 | -8.615850e-47 |
| Msa1167340 | Msa1440930 | 0.806588 | 7.648823e-50 | -8.615850e-47 |
| Msa1169910 | Msa1440930 | 0.827578 | 1.448145e-54 | -8.615850e-47 |
| Msa1181250 | Msa1440930 | 0.848935 | 4.461623e-60 | -8.615850e-47 |
| Msa1181330 | Msa1440930 | 0.850053 | 2.177563e-60 | -8.615850e-47 |
| Msa1181910 | Msa1440930 | 0.852563 | 4.252892e-61 | -8.615850e-47 |
| Msa1209200 | Msa1440930 | 0.807460 | 5.000900e-50 | -8.615850e-47 |
| Msa1211230 | Msa1440930 | -0.812165 | 4.864123e-51 | -8.615850e-47 |
| Msa1211420 | Msa1440930 | -0.807075 | 6.033584e-50 | -8.615850e-47 |
| Msa1213890 | Msa1440930 | 0.800279 | 1.552498e-48 | -8.615850e-47 |
| Msa0512340 | Msa1440930 | 0.802238 | 6.169487e-49 | -8.615850e-47 |
| Msa0539410 | Msa1440930 | 0.810255 | 1.262198e-50 | -8.615850e-47 |
| Msa0548240 | Msa1440930 | 0.804078 | 2.567592e-49 | -8.615850e-47 |
| Msa0554920 | Msa1440930 | 0.813485 | 2.499151e-51 | -8.615850e-47 |
| Msa0556060 | Msa1440930 | 0.812497 | 4.115319e-51 | -8.615850e-47 |
| Msa0572840 | Msa1440930 | 0.800154 | 1.646272e-48 | -8.615850e-47 |
| Msa0581280 | Msa1440930 | 0.806048 | 9.939356e-50 | -8.615850e-47 |
| Msa0583360 | Msa1440930 | -0.807000 | 6.259889e-50 | -8.615850e-47 |
| Msa0588260 | Msa1440930 | 0.805594 | 1.238000e-49 | -8.615850e-47 |
| Msa0876810 | Msa1440930 | 0.812292 | 4.562520e-51 | -8.615850e-47 |
| Msa0892640 | Msa1440930 | 0.805192 | 1.502899e-49 | -8.615850e-47 |
| Msa0958000 | Msa1440930 | 0.815739 | 7.922689e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440930 | MtrunA17_Chr7g0237701 | 98.780 | 246 | 3 | 0 | 1 | 246 | 1 | 246 | 0.0 | 498 |
| Msa1440930 | MtrunA17_Chr4g0002321 | 47.234 | 235 | 123 | 1 | 13 | 246 | 9 | 243 | 6.04e-74 | 225 |
| Msa1440930 | MtrunA17_Chr1g0155331 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 3.37e-73 | 223 |
| Msa1440930 | MtrunA17_Chr2g0298841 | 45.344 | 247 | 131 | 2 | 1 | 246 | 1 | 244 | 6.31e-72 | 220 |
| Msa1440930 | MtrunA17_Chr3g0088731 | 83.784 | 74 | 11 | 1 | 1 | 74 | 1 | 73 | 3.49e-34 | 117 |
| Msa1440930 | MtrunA17_Chr1g0155311 | 56.667 | 60 | 26 | 0 | 177 | 236 | 3 | 62 | 7.43e-20 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440930 | AT1G80750.1 | 51.210 | 248 | 118 | 3 | 1 | 246 | 1 | 247 | 1.49e-78 | 237 |
| Msa1440930 | AT2G01250.1 | 48.101 | 237 | 118 | 2 | 13 | 246 | 8 | 242 | 1.11e-73 | 224 |
| Msa1440930 | AT2G44120.1 | 47.257 | 237 | 120 | 2 | 13 | 246 | 8 | 242 | 1.30e-73 | 224 |
| Msa1440930 | AT2G44120.2 | 47.257 | 237 | 120 | 2 | 13 | 246 | 13 | 247 | 1.53e-73 | 224 |
| Msa1440930 | AT3G13580.5 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.4 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.2 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.3 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.1 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.7 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.8 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.6 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT3G13580.9 | 46.383 | 235 | 125 | 1 | 13 | 246 | 10 | 244 | 6.11e-73 | 223 |
| Msa1440930 | AT2G01250.2 | 43.605 | 172 | 92 | 2 | 13 | 181 | 8 | 177 | 9.32e-39 | 133 |
Find 71 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAACTGAACAAGTGCTTTC+TGG | 0.154170 | tig0029145:-30760 | Msa1440930:intergenic |
| ATTTAATATAATCATGTTAA+TGG | 0.176507 | tig0029145:+32152 | Msa1440930:three_prime_UTR |
| CTGAATACGAATGACTATTA+TGG | 0.199323 | tig0029145:-30627 | Msa1440930:intergenic |
| TACAAGGATGGTGGAGATTC+AGG | 0.234481 | tig0029145:+32059 | Msa1440930:CDS |
| CATAATAGTCATTCGTATTC+AGG | 0.240399 | tig0029145:+30628 | Msa1440930:CDS |
| CAGAAAGCACTTGTTCAGTT+TGG | 0.268658 | tig0029145:+30761 | Msa1440930:CDS |
| ACTATTATGGGCTTGTTCTT+TGG | 0.268791 | tig0029145:-30614 | Msa1440930:intergenic |
| CCCTTCGTTTCATTCTAATA+AGG | 0.310268 | tig0029145:-30562 | Msa1440930:intergenic |
| AAGCCAGCAGAGGGATTAAA+AGG | 0.319017 | tig0029145:+32023 | Msa1440930:CDS |
| GGAATATAGTTGAGATCCTT+TGG | 0.341292 | tig0029145:-30241 | Msa1440930:intergenic |
| AGAAAGCACTTGTTCAGTTT+GGG | 0.353399 | tig0029145:+30762 | Msa1440930:CDS |
| TTGTAGGAATTGGGAAAGTT+TGG | 0.361702 | tig0029145:+31906 | Msa1440930:intron |
| TGCTGGCTTGTTCAGTTCAA+AGG | 0.372394 | tig0029145:-32009 | Msa1440930:intergenic |
| TGCAAATCTTAAAACGATAA+AGG | 0.380478 | tig0029145:+31721 | Msa1440930:CDS |
| TGAATACGAATGACTATTAT+GGG | 0.384437 | tig0029145:-30626 | Msa1440930:intergenic |
| CTCTTCTTCAATATAACCTC+AGG | 0.413339 | tig0029145:-30262 | Msa1440930:intergenic |
| GACAATGAGAGGAAGGAGAA+AGG | 0.422837 | tig0029145:+32303 | Msa1440930:intron |
| GTTCAAAGGGCCACATAAAT+CGG | 0.432282 | tig0029145:-31995 | Msa1440930:intergenic |
| ACAATGAGAGGAAGGAGAAA+GGG | 0.439757 | tig0029145:+32304 | Msa1440930:intron |
| TATGTATTACCTGCTCAATA+AGG | 0.444502 | tig0029145:-31808 | Msa1440930:intergenic |
| GCTGGCTTGTTCAGTTCAAA+GGG | 0.448912 | tig0029145:-32008 | Msa1440930:intergenic |
| AGCATGGGCCTTGAGTAAAA+AGG | 0.451851 | tig0029145:+30297 | Msa1440930:CDS |
| GTTGAACCATATGTCACCTA+TGG | 0.470090 | tig0029145:+30852 | Msa1440930:CDS |
| CAATGTTGGTCCACACTTCA+AGG | 0.470139 | tig0029145:+31965 | Msa1440930:CDS |
| TCAATAAAATGAATTGATGT+AGG | 0.482509 | tig0029145:+32111 | Msa1440930:exon |
| ATAATAGTCATTCGTATTCA+GGG | 0.488242 | tig0029145:+30629 | Msa1440930:CDS |
| GCTTACCCATAGGTGACATA+TGG | 0.491527 | tig0029145:-30858 | Msa1440930:intergenic |
| ACGAAGGGTCAAGTGGAGAC+GGG | 0.493528 | tig0029145:+30577 | Msa1440930:CDS |
| TTGGCCATCACTCCATCAGT+TGG | 0.498511 | tig0029145:-30819 | Msa1440930:intergenic |
| GTCTTTGTGAAGCCAACTGA+TGG | 0.503340 | tig0029145:+30807 | Msa1440930:CDS |
| ATAATCATGTTAATGGTTTG+TGG | 0.504821 | tig0029145:+32159 | Msa1440930:three_prime_UTR |
| AGAGGAAACACAGCGAAGCA+TGG | 0.507603 | tig0029145:+30281 | Msa1440930:CDS |
| ACAAGGATGGTGGAGATTCA+GGG | 0.513757 | tig0029145:+32060 | Msa1440930:CDS |
| CAGCTAAAAGCGATAAATGA+AGG | 0.518558 | tig0029145:-32239 | Msa1440930:intergenic |
| CTGAGGTTATATTGAAGAAG+AGG | 0.519905 | tig0029145:+30263 | Msa1440930:CDS |
| AGGAAGTTGTCCGATTTATG+TGG | 0.520802 | tig0029145:+31985 | Msa1440930:CDS |
| TGGTTTGTGGTGTCCTCACA+TGG | 0.523920 | tig0029145:+32172 | Msa1440930:three_prime_UTR |
| GAGAGGAAGGAGAAAGGGAT+TGG | 0.527012 | tig0029145:+32309 | Msa1440930:intron |
| AAAGGAGCTGATTTACAAGA+AGG | 0.528892 | tig0029145:+31739 | Msa1440930:CDS |
| ACTTGAAAAGATGGCTGAAG+AGG | 0.529766 | tig0029145:+30213 | Msa1440930:exon |
| AACGAAGGGTCAAGTGGAGA+CGG | 0.529927 | tig0029145:+30576 | Msa1440930:CDS |
| GCAGTGAATACTTGAAAAGA+TGG | 0.533534 | tig0029145:+30204 | Msa1440930:exon |
| AATCTCCACCATCCTTGTAT+CGG | 0.534716 | tig0029145:-32055 | Msa1440930:intergenic |
| TGATGGAGTGATGGCCAAGC+TGG | 0.538270 | tig0029145:+30824 | Msa1440930:CDS |
| AGTCCTTGGACTTCCTGAGC+TGG | 0.543154 | tig0029145:-30342 | Msa1440930:intergenic |
| GAGGAAACACAGCGAAGCAT+GGG | 0.549509 | tig0029145:+30282 | Msa1440930:CDS |
| ATAAGGTTATTGTCTGTCAA+AGG | 0.552916 | tig0029145:-31791 | Msa1440930:intergenic |
| AGACAATAACCTTATTGAGC+AGG | 0.555591 | tig0029145:+31799 | Msa1440930:CDS |
| GTGCATCAAATTGACAATGT+TGG | 0.571611 | tig0029145:+31951 | Msa1440930:CDS |
| CGAAGGGTCAAGTGGAGACG+GGG | 0.582255 | tig0029145:+30578 | Msa1440930:CDS |
| GAACTGAACAAGCCAGCAGA+GGG | 0.584219 | tig0029145:+32014 | Msa1440930:CDS |
| TGGTTCAACTCTCGCCAGCT+TGG | 0.586026 | tig0029145:-30838 | Msa1440930:intergenic |
| GGCTGAAGAGGAACAACCAA+AGG | 0.590481 | tig0029145:+30225 | Msa1440930:CDS |
| TTGAACCATATGTCACCTAT+GGG | 0.596680 | tig0029145:+30853 | Msa1440930:CDS |
| GAATGAAACGAAGGGTCAAG+TGG | 0.608473 | tig0029145:+30570 | Msa1440930:CDS |
| AAGGAGCTGATTTACAAGAA+GGG | 0.620612 | tig0029145:+31740 | Msa1440930:CDS |
| TTCATTTCAGGACATAAACA+TGG | 0.621482 | tig0029145:-32392 | Msa1440930:intergenic |
| CGGACAACTTCCTTGAAGTG+TGG | 0.624573 | tig0029145:-31975 | Msa1440930:intergenic |
| ACCTTATTAGAATGAAACGA+AGG | 0.629621 | tig0029145:+30561 | Msa1440930:CDS |
| TTTCCAGCTCAGGAAGTCCA+AGG | 0.632786 | tig0029145:+30339 | Msa1440930:CDS |
| AAAAGGGAGCAACTGCAGCA+TGG | 0.642695 | tig0029145:-32357 | Msa1440930:intergenic |
| CAAGGATGGTGGAGATTCAG+GGG | 0.643297 | tig0029145:+32061 | Msa1440930:CDS |
| TGAACTGAACAAGCCAGCAG+AGG | 0.646369 | tig0029145:+32013 | Msa1440930:CDS |
| CCTTATTAGAATGAAACGAA+GGG | 0.647440 | tig0029145:+30562 | Msa1440930:CDS |
| AAATCATCAAAATCCATGTG+AGG | 0.647861 | tig0029145:-32185 | Msa1440930:intergenic |
| GAAGCCAACTGATGGAGTGA+TGG | 0.656585 | tig0029145:+30815 | Msa1440930:CDS |
| TAATAGTCATTCGTATTCAG+GGG | 0.663363 | tig0029145:+30630 | Msa1440930:CDS |
| GGATCTCAACTATATTCCTG+AGG | 0.677649 | tig0029145:+30246 | Msa1440930:CDS |
| GCTCGTTGATGAGATCCTCA+CGG | 0.699479 | tig0029145:-32085 | Msa1440930:intergenic |
| TTATATTAAATAGTATACTG+TGG | 0.700084 | tig0029145:-32140 | Msa1440930:intergenic |
| TGGAGATTCAGGGGACCGTG+AGG | 0.708623 | tig0029145:+32070 | Msa1440930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATATAATCATGTTAA+TGG | + | tig0029145:32152-32171 | Msa1440930:three_prime_UTR | 10.0% |
| !!! | TTTTTGTTTTCTTTTTTATT+TGG | + | tig0029145:32262-32281 | Msa1440930:three_prime_UTR | 10.0% |
| !!! | TTTTGTTTTCTTTTTTATTT+GGG | + | tig0029145:32263-32282 | Msa1440930:three_prime_UTR | 10.0% |
| !! | ATTTAATATAATCATGTTAA+TGG | + | tig0029145:32152-32171 | Msa1440930:three_prime_UTR | 10.0% |
| !!! | TTTTTGTTTTCTTTTTTATT+TGG | + | tig0029145:32262-32281 | Msa1440930:three_prime_UTR | 10.0% |
| !!! | TTTTGTTTTCTTTTTTATTT+GGG | + | tig0029145:32263-32282 | Msa1440930:three_prime_UTR | 10.0% |
| !! | AATATAACAAAATAAAAGGA+GGG | - | tig0029145:30434-30453 | Msa1440930:intergenic | 15.0% |
| !! | AGTGAATATAACAAAATAAA+AGG | - | tig0029145:30438-30457 | Msa1440930:intergenic | 15.0% |
| !!! | TTTATGAAGTTTTTTTGAAA+AGG | - | tig0029145:31341-31360 | Msa1440930:intergenic | 15.0% |
| !!! | TACTATCTATAAATACTTTT+TGG | + | tig0029145:31384-31403 | Msa1440930:intron | 15.0% |
| !! | TTATATTAAATAGTATACTG+TGG | - | tig0029145:32143-32162 | Msa1440930:intergenic | 15.0% |
| !! | AATATAACAAAATAAAAGGA+GGG | - | tig0029145:30434-30453 | Msa1440930:intergenic | 15.0% |
| !! | AGTGAATATAACAAAATAAA+AGG | - | tig0029145:30438-30457 | Msa1440930:intergenic | 15.0% |
| !!! | TTTATGAAGTTTTTTTGAAA+AGG | - | tig0029145:31341-31360 | Msa1440930:intergenic | 15.0% |
| !!! | TACTATCTATAAATACTTTT+TGG | + | tig0029145:31384-31403 | Msa1440930:intron | 15.0% |
| !! | TTATATTAAATAGTATACTG+TGG | - | tig0029145:32143-32162 | Msa1440930:intergenic | 15.0% |
| !! | GAATATAACAAAATAAAAGG+AGG | - | tig0029145:30435-30454 | Msa1440930:intergenic | 20.0% |
| !! | ATTATGAACTTTCATATAGT+TGG | + | tig0029145:30932-30951 | Msa1440930:intron | 20.0% |
| !!! | TTGAACTTTCATATAGTTTT+AGG | + | tig0029145:31001-31020 | Msa1440930:intron | 20.0% |
| !!! | ATTTTATGAAGTTAACTTTC+TGG | - | tig0029145:31315-31334 | Msa1440930:intergenic | 20.0% |
| !! | AAAACTTCATAAATTGTTTG+TGG | + | tig0029145:31348-31367 | Msa1440930:intron | 20.0% |
| !!! | AAACAGATTTTCACAAAATT+AGG | - | tig0029145:31689-31708 | Msa1440930:intergenic | 20.0% |
| !! | TCAATAAAATGAATTGATGT+AGG | + | tig0029145:32111-32130 | Msa1440930:exon | 20.0% |
| !!! | ATGGTTTTAGATATTGAAAA+GGG | - | tig0029145:32376-32395 | Msa1440930:intergenic | 20.0% |
| !! | GAATATAACAAAATAAAAGG+AGG | - | tig0029145:30435-30454 | Msa1440930:intergenic | 20.0% |
| !! | ATTATGAACTTTCATATAGT+TGG | + | tig0029145:30932-30951 | Msa1440930:intron | 20.0% |
| !!! | TTGAACTTTCATATAGTTTT+AGG | + | tig0029145:31001-31020 | Msa1440930:intron | 20.0% |
| !!! | ATTTTATGAAGTTAACTTTC+TGG | - | tig0029145:31315-31334 | Msa1440930:intergenic | 20.0% |
| !! | AAAACTTCATAAATTGTTTG+TGG | + | tig0029145:31348-31367 | Msa1440930:intron | 20.0% |
| !!! | AAACAGATTTTCACAAAATT+AGG | - | tig0029145:31689-31708 | Msa1440930:intergenic | 20.0% |
| !! | TCAATAAAATGAATTGATGT+AGG | + | tig0029145:32111-32130 | Msa1440930:exon | 20.0% |
| !!! | ATGGTTTTAGATATTGAAAA+GGG | - | tig0029145:32376-32395 | Msa1440930:intergenic | 20.0% |
| ! | TATTCAAAAATGAAATCCTC+AGG | - | tig0029145:30379-30398 | Msa1440930:intergenic | 25.0% |
| ! | TGAATACGAATGACTATTAT+GGG | - | tig0029145:30629-30648 | Msa1440930:intergenic | 25.0% |
| ! | ATAATAGTCATTCGTATTCA+GGG | + | tig0029145:30629-30648 | Msa1440930:CDS | 25.0% |
| ! | GACAAAAAATCAAAACATCA+AGG | - | tig0029145:30674-30693 | Msa1440930:intergenic | 25.0% |
| ! | AAATATGTTATGACTGTACA+GGG | - | tig0029145:30696-30715 | Msa1440930:intergenic | 25.0% |
| ! | AAAATATGTTATGACTGTAC+AGG | - | tig0029145:30697-30716 | Msa1440930:intergenic | 25.0% |
| !!! | TTTTTGCTCTATTTGCTTTT+AGG | + | tig0029145:30715-30734 | Msa1440930:intron | 25.0% |
| ! | TTGTTGAACTTTCATATAGT+TGG | + | tig0029145:30965-30984 | Msa1440930:intron | 25.0% |
| ! | TTGTCAATCGAGAAATATAT+CGG | - | tig0029145:31171-31190 | Msa1440930:intergenic | 25.0% |
| !!! | AAACACCATTTTTAGGTTAA+AGG | + | tig0029145:31189-31208 | Msa1440930:intron | 25.0% |
| ! | ATCTTCCTTTAACCTAAAAA+TGG | - | tig0029145:31197-31216 | Msa1440930:intergenic | 25.0% |
| ! | TTAGAATATTCACAGAAGAT+TGG | + | tig0029145:31408-31427 | Msa1440930:intron | 25.0% |
| ! | TAGAATATTCACAGAAGATT+GGG | + | tig0029145:31409-31428 | Msa1440930:intron | 25.0% |
| !! | AACCAGTTTTTCTAATAAAG+TGG | - | tig0029145:31593-31612 | Msa1440930:intergenic | 25.0% |
| ! | TGCAAATCTTAAAACGATAA+AGG | + | tig0029145:31721-31740 | Msa1440930:CDS | 25.0% |
| ! | ATAATCATGTTAATGGTTTG+TGG | + | tig0029145:32159-32178 | Msa1440930:three_prime_UTR | 25.0% |
| !!! | TTTTATTTGGGTTAGTATGT+AGG | + | tig0029145:32275-32294 | Msa1440930:intron | 25.0% |
| !!! | TTTATTTGGGTTAGTATGTA+GGG | + | tig0029145:32276-32295 | Msa1440930:intron | 25.0% |
| !!! | CATGGTTTTAGATATTGAAA+AGG | - | tig0029145:32377-32396 | Msa1440930:intergenic | 25.0% |
| ! | TATTCAAAAATGAAATCCTC+AGG | - | tig0029145:30379-30398 | Msa1440930:intergenic | 25.0% |
| ! | TGAATACGAATGACTATTAT+GGG | - | tig0029145:30629-30648 | Msa1440930:intergenic | 25.0% |
| ! | ATAATAGTCATTCGTATTCA+GGG | + | tig0029145:30629-30648 | Msa1440930:CDS | 25.0% |
| ! | GACAAAAAATCAAAACATCA+AGG | - | tig0029145:30674-30693 | Msa1440930:intergenic | 25.0% |
| ! | AAATATGTTATGACTGTACA+GGG | - | tig0029145:30696-30715 | Msa1440930:intergenic | 25.0% |
| ! | AAAATATGTTATGACTGTAC+AGG | - | tig0029145:30697-30716 | Msa1440930:intergenic | 25.0% |
| !!! | TTTTTGCTCTATTTGCTTTT+AGG | + | tig0029145:30715-30734 | Msa1440930:intron | 25.0% |
| ! | TTGTTGAACTTTCATATAGT+TGG | + | tig0029145:30965-30984 | Msa1440930:intron | 25.0% |
| ! | TTGTCAATCGAGAAATATAT+CGG | - | tig0029145:31171-31190 | Msa1440930:intergenic | 25.0% |
| !!! | AAACACCATTTTTAGGTTAA+AGG | + | tig0029145:31189-31208 | Msa1440930:intron | 25.0% |
| ! | ATCTTCCTTTAACCTAAAAA+TGG | - | tig0029145:31197-31216 | Msa1440930:intergenic | 25.0% |
| ! | TTAGAATATTCACAGAAGAT+TGG | + | tig0029145:31408-31427 | Msa1440930:intron | 25.0% |
| ! | TAGAATATTCACAGAAGATT+GGG | + | tig0029145:31409-31428 | Msa1440930:intron | 25.0% |
| !! | AACCAGTTTTTCTAATAAAG+TGG | - | tig0029145:31593-31612 | Msa1440930:intergenic | 25.0% |
| ! | TGCAAATCTTAAAACGATAA+AGG | + | tig0029145:31721-31740 | Msa1440930:CDS | 25.0% |
| ! | ATAATCATGTTAATGGTTTG+TGG | + | tig0029145:32159-32178 | Msa1440930:three_prime_UTR | 25.0% |
| !!! | TTTTATTTGGGTTAGTATGT+AGG | + | tig0029145:32275-32294 | Msa1440930:intron | 25.0% |
| !!! | TTTATTTGGGTTAGTATGTA+GGG | + | tig0029145:32276-32295 | Msa1440930:intron | 25.0% |
| !!! | CATGGTTTTAGATATTGAAA+AGG | - | tig0029145:32377-32396 | Msa1440930:intergenic | 25.0% |
| !! | TCATTTTTGAATATCGCAAC+AGG | + | tig0029145:30386-30405 | Msa1440930:CDS | 30.0% |
| ! | CATTTTTGAATATCGCAACA+GGG | + | tig0029145:30387-30406 | Msa1440930:CDS | 30.0% |
| ACCTTATTAGAATGAAACGA+AGG | + | tig0029145:30561-30580 | Msa1440930:CDS | 30.0% | |
| CCTTATTAGAATGAAACGAA+GGG | + | tig0029145:30562-30581 | Msa1440930:CDS | 30.0% | |
| CTGAATACGAATGACTATTA+TGG | - | tig0029145:30630-30649 | Msa1440930:intergenic | 30.0% | |
| CATAATAGTCATTCGTATTC+AGG | + | tig0029145:30628-30647 | Msa1440930:CDS | 30.0% | |
| TAATAGTCATTCGTATTCAG+GGG | + | tig0029145:30630-30649 | Msa1440930:CDS | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | tig0029145:30936-30955 | Msa1440930:intron | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | tig0029145:30937-30956 | Msa1440930:intron | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | tig0029145:30936-30955 | Msa1440930:intron | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | tig0029145:30937-30956 | Msa1440930:intron | 30.0% | |
| ACACTATTTAGTACAGATAG+AGG | + | tig0029145:31110-31129 | Msa1440930:intron | 30.0% | |
| !! | GATTGACAAACACCATTTTT+AGG | + | tig0029145:31182-31201 | Msa1440930:intron | 30.0% |
| ATTGGAAGAACTTTAGTTAC+AGG | - | tig0029145:31261-31280 | Msa1440930:intergenic | 30.0% | |
| CTCTACTATTAGTACACATA+AGG | - | tig0029145:31502-31521 | Msa1440930:intergenic | 30.0% | |
| TATGTAAAGTAGTGCACATA+TGG | + | tig0029145:31558-31577 | Msa1440930:intron | 30.0% | |
| CACCACTTTATTAGAAAAAC+TGG | + | tig0029145:31588-31607 | Msa1440930:intron | 30.0% | |
| ATAAGGTTATTGTCTGTCAA+AGG | - | tig0029145:31794-31813 | Msa1440930:intergenic | 30.0% | |
| TATGTATTACCTGCTCAATA+AGG | - | tig0029145:31811-31830 | Msa1440930:intergenic | 30.0% | |
| ACAAAAACAATTCAGTGAGT+GGG | - | tig0029145:31867-31886 | Msa1440930:intergenic | 30.0% | |
| TACAAAAACAATTCAGTGAG+TGG | - | tig0029145:31868-31887 | Msa1440930:intergenic | 30.0% | |
| AAATCATCAAAATCCATGTG+AGG | - | tig0029145:32188-32207 | Msa1440930:intergenic | 30.0% | |
| !! | TTATTTGGGTTAGTATGTAG+GGG | + | tig0029145:32277-32296 | Msa1440930:intron | 30.0% |
| !! | TCATTTTTGAATATCGCAAC+AGG | + | tig0029145:30386-30405 | Msa1440930:CDS | 30.0% |
| ! | CATTTTTGAATATCGCAACA+GGG | + | tig0029145:30387-30406 | Msa1440930:CDS | 30.0% |
| ACCTTATTAGAATGAAACGA+AGG | + | tig0029145:30561-30580 | Msa1440930:CDS | 30.0% | |
| CCTTATTAGAATGAAACGAA+GGG | + | tig0029145:30562-30581 | Msa1440930:CDS | 30.0% | |
| CTGAATACGAATGACTATTA+TGG | - | tig0029145:30630-30649 | Msa1440930:intergenic | 30.0% | |
| CATAATAGTCATTCGTATTC+AGG | + | tig0029145:30628-30647 | Msa1440930:CDS | 30.0% | |
| TAATAGTCATTCGTATTCAG+GGG | + | tig0029145:30630-30649 | Msa1440930:CDS | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | tig0029145:30936-30955 | Msa1440930:intron | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | tig0029145:30937-30956 | Msa1440930:intron | 30.0% | |
| TGAACTTTCATATAGTTGGA+AGG | + | tig0029145:30936-30955 | Msa1440930:intron | 30.0% | |
| GAACTTTCATATAGTTGGAA+GGG | + | tig0029145:30937-30956 | Msa1440930:intron | 30.0% | |
| ACACTATTTAGTACAGATAG+AGG | + | tig0029145:31110-31129 | Msa1440930:intron | 30.0% | |
| !! | GATTGACAAACACCATTTTT+AGG | + | tig0029145:31182-31201 | Msa1440930:intron | 30.0% |
| ATTGGAAGAACTTTAGTTAC+AGG | - | tig0029145:31261-31280 | Msa1440930:intergenic | 30.0% | |
| CTCTACTATTAGTACACATA+AGG | - | tig0029145:31502-31521 | Msa1440930:intergenic | 30.0% | |
| TATGTAAAGTAGTGCACATA+TGG | + | tig0029145:31558-31577 | Msa1440930:intron | 30.0% | |
| CACCACTTTATTAGAAAAAC+TGG | + | tig0029145:31588-31607 | Msa1440930:intron | 30.0% | |
| ATAAGGTTATTGTCTGTCAA+AGG | - | tig0029145:31794-31813 | Msa1440930:intergenic | 30.0% | |
| TATGTATTACCTGCTCAATA+AGG | - | tig0029145:31811-31830 | Msa1440930:intergenic | 30.0% | |
| ACAAAAACAATTCAGTGAGT+GGG | - | tig0029145:31867-31886 | Msa1440930:intergenic | 30.0% | |
| TACAAAAACAATTCAGTGAG+TGG | - | tig0029145:31868-31887 | Msa1440930:intergenic | 30.0% | |
| AAATCATCAAAATCCATGTG+AGG | - | tig0029145:32188-32207 | Msa1440930:intergenic | 30.0% | |
| !! | TTATTTGGGTTAGTATGTAG+GGG | + | tig0029145:32277-32296 | Msa1440930:intron | 30.0% |
| GCAGTGAATACTTGAAAAGA+TGG | + | tig0029145:30204-30223 | Msa1440930:exon | 35.0% | |
| GGAATATAGTTGAGATCCTT+TGG | - | tig0029145:30244-30263 | Msa1440930:intergenic | 35.0% | |
| CTCTTCTTCAATATAACCTC+AGG | - | tig0029145:30265-30284 | Msa1440930:intergenic | 35.0% | |
| CTGAGGTTATATTGAAGAAG+AGG | + | tig0029145:30263-30282 | Msa1440930:CDS | 35.0% | |
| !!! | TGAGCTGGAAACTTTTTTTC+TGG | - | tig0029145:30330-30349 | Msa1440930:intergenic | 35.0% |
| AGAAAAAAAGTTTCCAGCTC+AGG | + | tig0029145:30329-30348 | Msa1440930:CDS | 35.0% | |
| !!! | AGGCTTTTTTATGAAGTCCT+TGG | - | tig0029145:30359-30378 | Msa1440930:intergenic | 35.0% |
| CCCTTCGTTTCATTCTAATA+AGG | - | tig0029145:30565-30584 | Msa1440930:intergenic | 35.0% | |
| ! | ACTATTATGGGCTTGTTCTT+TGG | - | tig0029145:30617-30636 | Msa1440930:intergenic | 35.0% |
| !! | AGAAAGCACTTGTTCAGTTT+GGG | + | tig0029145:30762-30781 | Msa1440930:CDS | 35.0% |
| TTGAACCATATGTCACCTAT+GGG | + | tig0029145:30853-30872 | Msa1440930:CDS | 35.0% | |
| TTAACTTTCTGGACAGAAGA+AGG | - | tig0029145:31304-31323 | Msa1440930:intergenic | 35.0% | |
| CACAGAAAAGTAAAGATGCA+AGG | - | tig0029145:31625-31644 | Msa1440930:intergenic | 35.0% | |
| ATCCTCAGCAAACTGAAATT+TGG | - | tig0029145:31662-31681 | Msa1440930:intergenic | 35.0% | |
| ! | AAAGGAGCTGATTTACAAGA+AGG | + | tig0029145:31739-31758 | Msa1440930:CDS | 35.0% |
| ! | AAGGAGCTGATTTACAAGAA+GGG | + | tig0029145:31740-31759 | Msa1440930:CDS | 35.0% |
| AGACAATAACCTTATTGAGC+AGG | + | tig0029145:31799-31818 | Msa1440930:CDS | 35.0% | |
| TTGAGCAGGTAATACATACA+CGG | + | tig0029145:31813-31832 | Msa1440930:intron | 35.0% | |
| CAAAGGAAAACTAGGAATCT+AGG | - | tig0029145:31843-31862 | Msa1440930:intergenic | 35.0% | |
| AATTCCTACAAGGCAAAAAG+TGG | - | tig0029145:31897-31916 | Msa1440930:intergenic | 35.0% | |
| ! | ACTTTTTGCCTTGTAGGAAT+TGG | + | tig0029145:31896-31915 | Msa1440930:intron | 35.0% |
| ! | CTTTTTGCCTTGTAGGAATT+GGG | + | tig0029145:31897-31916 | Msa1440930:intron | 35.0% |
| AAACTTTCCCAATTCCTACA+AGG | - | tig0029145:31907-31926 | Msa1440930:intergenic | 35.0% | |
| TTGTAGGAATTGGGAAAGTT+TGG | + | tig0029145:31906-31925 | Msa1440930:intron | 35.0% | |
| GTGCATCAAATTGACAATGT+TGG | + | tig0029145:31951-31970 | Msa1440930:CDS | 35.0% | |
| AGGATTGAAAAACCGATACA+AGG | + | tig0029145:32043-32062 | Msa1440930:CDS | 35.0% | |
| TTGAAAAACCGATACAAGGA+TGG | + | tig0029145:32047-32066 | Msa1440930:CDS | 35.0% | |
| CAGCTAAAAGCGATAAATGA+AGG | - | tig0029145:32242-32261 | Msa1440930:intergenic | 35.0% | |
| !! | TATTTGGGTTAGTATGTAGG+GGG | + | tig0029145:32278-32297 | Msa1440930:intron | 35.0% |
| GCAGTGAATACTTGAAAAGA+TGG | + | tig0029145:30204-30223 | Msa1440930:exon | 35.0% | |
| GGAATATAGTTGAGATCCTT+TGG | - | tig0029145:30244-30263 | Msa1440930:intergenic | 35.0% | |
| CTCTTCTTCAATATAACCTC+AGG | - | tig0029145:30265-30284 | Msa1440930:intergenic | 35.0% | |
| CTGAGGTTATATTGAAGAAG+AGG | + | tig0029145:30263-30282 | Msa1440930:CDS | 35.0% | |
| !!! | TGAGCTGGAAACTTTTTTTC+TGG | - | tig0029145:30330-30349 | Msa1440930:intergenic | 35.0% |
| AGAAAAAAAGTTTCCAGCTC+AGG | + | tig0029145:30329-30348 | Msa1440930:CDS | 35.0% | |
| !!! | AGGCTTTTTTATGAAGTCCT+TGG | - | tig0029145:30359-30378 | Msa1440930:intergenic | 35.0% |
| CCCTTCGTTTCATTCTAATA+AGG | - | tig0029145:30565-30584 | Msa1440930:intergenic | 35.0% | |
| ! | ACTATTATGGGCTTGTTCTT+TGG | - | tig0029145:30617-30636 | Msa1440930:intergenic | 35.0% |
| !! | AGAAAGCACTTGTTCAGTTT+GGG | + | tig0029145:30762-30781 | Msa1440930:CDS | 35.0% |
| TTGAACCATATGTCACCTAT+GGG | + | tig0029145:30853-30872 | Msa1440930:CDS | 35.0% | |
| TTAACTTTCTGGACAGAAGA+AGG | - | tig0029145:31304-31323 | Msa1440930:intergenic | 35.0% | |
| CACAGAAAAGTAAAGATGCA+AGG | - | tig0029145:31625-31644 | Msa1440930:intergenic | 35.0% | |
| ATCCTCAGCAAACTGAAATT+TGG | - | tig0029145:31662-31681 | Msa1440930:intergenic | 35.0% | |
| ! | AAAGGAGCTGATTTACAAGA+AGG | + | tig0029145:31739-31758 | Msa1440930:CDS | 35.0% |
| ! | AAGGAGCTGATTTACAAGAA+GGG | + | tig0029145:31740-31759 | Msa1440930:CDS | 35.0% |
| AGACAATAACCTTATTGAGC+AGG | + | tig0029145:31799-31818 | Msa1440930:CDS | 35.0% | |
| TTGAGCAGGTAATACATACA+CGG | + | tig0029145:31813-31832 | Msa1440930:intron | 35.0% | |
| CAAAGGAAAACTAGGAATCT+AGG | - | tig0029145:31843-31862 | Msa1440930:intergenic | 35.0% | |
| AATTCCTACAAGGCAAAAAG+TGG | - | tig0029145:31897-31916 | Msa1440930:intergenic | 35.0% | |
| ! | ACTTTTTGCCTTGTAGGAAT+TGG | + | tig0029145:31896-31915 | Msa1440930:intron | 35.0% |
| ! | CTTTTTGCCTTGTAGGAATT+GGG | + | tig0029145:31897-31916 | Msa1440930:intron | 35.0% |
| AAACTTTCCCAATTCCTACA+AGG | - | tig0029145:31907-31926 | Msa1440930:intergenic | 35.0% | |
| TTGTAGGAATTGGGAAAGTT+TGG | + | tig0029145:31906-31925 | Msa1440930:intron | 35.0% | |
| GTGCATCAAATTGACAATGT+TGG | + | tig0029145:31951-31970 | Msa1440930:CDS | 35.0% | |
| AGGATTGAAAAACCGATACA+AGG | + | tig0029145:32043-32062 | Msa1440930:CDS | 35.0% | |
| TTGAAAAACCGATACAAGGA+TGG | + | tig0029145:32047-32066 | Msa1440930:CDS | 35.0% | |
| CAGCTAAAAGCGATAAATGA+AGG | - | tig0029145:32242-32261 | Msa1440930:intergenic | 35.0% | |
| !! | TATTTGGGTTAGTATGTAGG+GGG | + | tig0029145:32278-32297 | Msa1440930:intron | 35.0% |
| ACTTGAAAAGATGGCTGAAG+AGG | + | tig0029145:30213-30232 | Msa1440930:exon | 40.0% | |
| GGATCTCAACTATATTCCTG+AGG | + | tig0029145:30246-30265 | Msa1440930:CDS | 40.0% | |
| GGACTTCATAAAAAAGCCTG+AGG | + | tig0029145:30360-30379 | Msa1440930:CDS | 40.0% | |
| ATGACTTCTATCACTTGTGC+AGG | + | tig0029145:30532-30551 | Msa1440930:intron | 40.0% | |
| CAAACTGAACAAGTGCTTTC+TGG | - | tig0029145:30763-30782 | Msa1440930:intergenic | 40.0% | |
| !! | CAGAAAGCACTTGTTCAGTT+TGG | + | tig0029145:30761-30780 | Msa1440930:CDS | 40.0% |
| GTTGAACCATATGTCACCTA+TGG | + | tig0029145:30852-30871 | Msa1440930:CDS | 40.0% | |
| TCAATCTATCGCTTACCCAT+AGG | - | tig0029145:30871-30890 | Msa1440930:intergenic | 40.0% | |
| ACTATTGTGCTATAGCGTAG+AGG | + | tig0029145:31057-31076 | Msa1440930:intron | 40.0% | |
| TTCAAATTTCGCTACCCACA+CGG | - | tig0029145:31144-31163 | Msa1440930:intergenic | 40.0% | |
| TCACAGAAGATTGGGTTACT+TGG | + | tig0029145:31417-31436 | Msa1440930:intron | 40.0% | |
| ATTGGGTTACTTGGAGATCA+AGG | + | tig0029145:31426-31445 | Msa1440930:intron | 40.0% | |
| CCTAACATAGTTGCAAGCAT+CGG | - | tig0029145:31463-31482 | Msa1440930:intergenic | 40.0% | |
| GCTTGCAACTATGTTAGGAA+AGG | + | tig0029145:31465-31484 | Msa1440930:intron | 40.0% | |
| !!! | TGTTCCACTTTTTGCCTTGT+AGG | + | tig0029145:31890-31909 | Msa1440930:intron | 40.0% |
| AGGAAGTTGTCCGATTTATG+TGG | + | tig0029145:31985-32004 | Msa1440930:CDS | 40.0% | |
| GTTCAAAGGGCCACATAAAT+CGG | - | tig0029145:31998-32017 | Msa1440930:intergenic | 40.0% | |
| ! | AATCCTTTTAATCCCTCTGC+TGG | - | tig0029145:32029-32048 | Msa1440930:intergenic | 40.0% |
| AAAAACCGATACAAGGATGG+TGG | + | tig0029145:32050-32069 | Msa1440930:CDS | 40.0% | |
| AATCTCCACCATCCTTGTAT+CGG | - | tig0029145:32058-32077 | Msa1440930:intergenic | 40.0% | |
| ACAATGAGAGGAAGGAGAAA+GGG | + | tig0029145:32304-32323 | Msa1440930:intron | 40.0% | |
| ACTTGAAAAGATGGCTGAAG+AGG | + | tig0029145:30213-30232 | Msa1440930:exon | 40.0% | |
| GGATCTCAACTATATTCCTG+AGG | + | tig0029145:30246-30265 | Msa1440930:CDS | 40.0% | |
| GGACTTCATAAAAAAGCCTG+AGG | + | tig0029145:30360-30379 | Msa1440930:CDS | 40.0% | |
| ATGACTTCTATCACTTGTGC+AGG | + | tig0029145:30532-30551 | Msa1440930:intron | 40.0% | |
| CAAACTGAACAAGTGCTTTC+TGG | - | tig0029145:30763-30782 | Msa1440930:intergenic | 40.0% | |
| !! | CAGAAAGCACTTGTTCAGTT+TGG | + | tig0029145:30761-30780 | Msa1440930:CDS | 40.0% |
| GTTGAACCATATGTCACCTA+TGG | + | tig0029145:30852-30871 | Msa1440930:CDS | 40.0% | |
| TCAATCTATCGCTTACCCAT+AGG | - | tig0029145:30871-30890 | Msa1440930:intergenic | 40.0% | |
| ACTATTGTGCTATAGCGTAG+AGG | + | tig0029145:31057-31076 | Msa1440930:intron | 40.0% | |
| TTCAAATTTCGCTACCCACA+CGG | - | tig0029145:31144-31163 | Msa1440930:intergenic | 40.0% | |
| TCACAGAAGATTGGGTTACT+TGG | + | tig0029145:31417-31436 | Msa1440930:intron | 40.0% | |
| ATTGGGTTACTTGGAGATCA+AGG | + | tig0029145:31426-31445 | Msa1440930:intron | 40.0% | |
| CCTAACATAGTTGCAAGCAT+CGG | - | tig0029145:31463-31482 | Msa1440930:intergenic | 40.0% | |
| GCTTGCAACTATGTTAGGAA+AGG | + | tig0029145:31465-31484 | Msa1440930:intron | 40.0% | |
| !!! | TGTTCCACTTTTTGCCTTGT+AGG | + | tig0029145:31890-31909 | Msa1440930:intron | 40.0% |
| AGGAAGTTGTCCGATTTATG+TGG | + | tig0029145:31985-32004 | Msa1440930:CDS | 40.0% | |
| GTTCAAAGGGCCACATAAAT+CGG | - | tig0029145:31998-32017 | Msa1440930:intergenic | 40.0% | |
| ! | AATCCTTTTAATCCCTCTGC+TGG | - | tig0029145:32029-32048 | Msa1440930:intergenic | 40.0% |
| AAAAACCGATACAAGGATGG+TGG | + | tig0029145:32050-32069 | Msa1440930:CDS | 40.0% | |
| AATCTCCACCATCCTTGTAT+CGG | - | tig0029145:32058-32077 | Msa1440930:intergenic | 40.0% | |
| ACAATGAGAGGAAGGAGAAA+GGG | + | tig0029145:32304-32323 | Msa1440930:intron | 40.0% | |
| AGCATGGGCCTTGAGTAAAA+AGG | + | tig0029145:30297-30316 | Msa1440930:CDS | 45.0% | |
| ! | GAGTTGCGCCTTTTTACTCA+AGG | - | tig0029145:30308-30327 | Msa1440930:intergenic | 45.0% |
| GAATGAAACGAAGGGTCAAG+TGG | + | tig0029145:30570-30589 | Msa1440930:CDS | 45.0% | |
| GTCTTTGTGAAGCCAACTGA+TGG | + | tig0029145:30807-30826 | Msa1440930:CDS | 45.0% | |
| GCTTACCCATAGGTGACATA+TGG | - | tig0029145:30861-30880 | Msa1440930:intergenic | 45.0% | |
| ! | ATGAGAGGCAGCTAGTCTAT+TGG | - | tig0029145:31279-31298 | Msa1440930:intergenic | 45.0% |
| GGACAGAAGAAGGATATGAG+AGG | - | tig0029145:31294-31313 | Msa1440930:intergenic | 45.0% | |
| CCGATGCTTGCAACTATGTT+AGG | + | tig0029145:31460-31479 | Msa1440930:intron | 45.0% | |
| GCATCATGTGTGACATGCAT+AGG | - | tig0029145:31529-31548 | Msa1440930:intergenic | 45.0% | |
| !! | CGCCAAATTTCAGTTTGCTG+AGG | + | tig0029145:31657-31676 | Msa1440930:intron | 45.0% |
| GAGTGGGTCAAAGGAAAACT+AGG | - | tig0029145:31851-31870 | Msa1440930:intergenic | 45.0% | |
| CAATTCAGTGAGTGGGTCAA+AGG | - | tig0029145:31860-31879 | Msa1440930:intergenic | 45.0% | |
| CAATGTTGGTCCACACTTCA+AGG | + | tig0029145:31965-31984 | Msa1440930:CDS | 45.0% | |
| !! | GCTGGCTTGTTCAGTTCAAA+GGG | - | tig0029145:32011-32030 | Msa1440930:intergenic | 45.0% |
| !! | TGCTGGCTTGTTCAGTTCAA+AGG | - | tig0029145:32012-32031 | Msa1440930:intergenic | 45.0% |
| AAGCCAGCAGAGGGATTAAA+AGG | + | tig0029145:32023-32042 | Msa1440930:CDS | 45.0% | |
| !! | TACAAGGATGGTGGAGATTC+AGG | + | tig0029145:32059-32078 | Msa1440930:CDS | 45.0% |
| !! | ACAAGGATGGTGGAGATTCA+GGG | + | tig0029145:32060-32079 | Msa1440930:CDS | 45.0% |
| GACAATGAGAGGAAGGAGAA+AGG | + | tig0029145:32303-32322 | Msa1440930:intron | 45.0% | |
| AGCATGGGCCTTGAGTAAAA+AGG | + | tig0029145:30297-30316 | Msa1440930:CDS | 45.0% | |
| ! | GAGTTGCGCCTTTTTACTCA+AGG | - | tig0029145:30308-30327 | Msa1440930:intergenic | 45.0% |
| GAATGAAACGAAGGGTCAAG+TGG | + | tig0029145:30570-30589 | Msa1440930:CDS | 45.0% | |
| GTCTTTGTGAAGCCAACTGA+TGG | + | tig0029145:30807-30826 | Msa1440930:CDS | 45.0% | |
| GCTTACCCATAGGTGACATA+TGG | - | tig0029145:30861-30880 | Msa1440930:intergenic | 45.0% | |
| ! | ATGAGAGGCAGCTAGTCTAT+TGG | - | tig0029145:31279-31298 | Msa1440930:intergenic | 45.0% |
| GGACAGAAGAAGGATATGAG+AGG | - | tig0029145:31294-31313 | Msa1440930:intergenic | 45.0% | |
| CCGATGCTTGCAACTATGTT+AGG | + | tig0029145:31460-31479 | Msa1440930:intron | 45.0% | |
| GCATCATGTGTGACATGCAT+AGG | - | tig0029145:31529-31548 | Msa1440930:intergenic | 45.0% | |
| !! | CGCCAAATTTCAGTTTGCTG+AGG | + | tig0029145:31657-31676 | Msa1440930:intron | 45.0% |
| GAGTGGGTCAAAGGAAAACT+AGG | - | tig0029145:31851-31870 | Msa1440930:intergenic | 45.0% | |
| CAATTCAGTGAGTGGGTCAA+AGG | - | tig0029145:31860-31879 | Msa1440930:intergenic | 45.0% | |
| CAATGTTGGTCCACACTTCA+AGG | + | tig0029145:31965-31984 | Msa1440930:CDS | 45.0% | |
| !! | GCTGGCTTGTTCAGTTCAAA+GGG | - | tig0029145:32011-32030 | Msa1440930:intergenic | 45.0% |
| !! | TGCTGGCTTGTTCAGTTCAA+AGG | - | tig0029145:32012-32031 | Msa1440930:intergenic | 45.0% |
| AAGCCAGCAGAGGGATTAAA+AGG | + | tig0029145:32023-32042 | Msa1440930:CDS | 45.0% | |
| !! | TACAAGGATGGTGGAGATTC+AGG | + | tig0029145:32059-32078 | Msa1440930:CDS | 45.0% |
| !! | ACAAGGATGGTGGAGATTCA+GGG | + | tig0029145:32060-32079 | Msa1440930:CDS | 45.0% |
| GACAATGAGAGGAAGGAGAA+AGG | + | tig0029145:32303-32322 | Msa1440930:intron | 45.0% | |
| GGCTGAAGAGGAACAACCAA+AGG | + | tig0029145:30225-30244 | Msa1440930:CDS | 50.0% | |
| AGAGGAAACACAGCGAAGCA+TGG | + | tig0029145:30281-30300 | Msa1440930:CDS | 50.0% | |
| GAGGAAACACAGCGAAGCAT+GGG | + | tig0029145:30282-30301 | Msa1440930:CDS | 50.0% | |
| TTTCCAGCTCAGGAAGTCCA+AGG | + | tig0029145:30339-30358 | Msa1440930:CDS | 50.0% | |
| AACGAAGGGTCAAGTGGAGA+CGG | + | tig0029145:30576-30595 | Msa1440930:CDS | 50.0% | |
| GAAGCCAACTGATGGAGTGA+TGG | + | tig0029145:30815-30834 | Msa1440930:CDS | 50.0% | |
| TTGGCCATCACTCCATCAGT+TGG | - | tig0029145:30822-30841 | Msa1440930:intergenic | 50.0% | |
| !! | ATAGAGGCACTATAGCCGTG+TGG | + | tig0029145:31126-31145 | Msa1440930:intron | 50.0% |
| !! | TAGAGGCACTATAGCCGTGT+GGG | + | tig0029145:31127-31146 | Msa1440930:intron | 50.0% |
| CGGACAACTTCCTTGAAGTG+TGG | - | tig0029145:31978-31997 | Msa1440930:intergenic | 50.0% | |
| TGAACTGAACAAGCCAGCAG+AGG | + | tig0029145:32013-32032 | Msa1440930:CDS | 50.0% | |
| GAACTGAACAAGCCAGCAGA+GGG | + | tig0029145:32014-32033 | Msa1440930:CDS | 50.0% | |
| !! | CAAGGATGGTGGAGATTCAG+GGG | + | tig0029145:32061-32080 | Msa1440930:CDS | 50.0% |
| ! | GCTCGTTGATGAGATCCTCA+CGG | - | tig0029145:32088-32107 | Msa1440930:intergenic | 50.0% |
| ! | TGGTTTGTGGTGTCCTCACA+TGG | + | tig0029145:32172-32191 | Msa1440930:three_prime_UTR | 50.0% |
| TGTAGGGGGTTGACAATGAG+AGG | + | tig0029145:32292-32311 | Msa1440930:intron | 50.0% | |
| GAGAGGAAGGAGAAAGGGAT+TGG | + | tig0029145:32309-32328 | Msa1440930:intron | 50.0% | |
| AAAAGGGAGCAACTGCAGCA+TGG | - | tig0029145:32360-32379 | Msa1440930:intergenic | 50.0% | |
| GGCTGAAGAGGAACAACCAA+AGG | + | tig0029145:30225-30244 | Msa1440930:CDS | 50.0% | |
| AGAGGAAACACAGCGAAGCA+TGG | + | tig0029145:30281-30300 | Msa1440930:CDS | 50.0% | |
| GAGGAAACACAGCGAAGCAT+GGG | + | tig0029145:30282-30301 | Msa1440930:CDS | 50.0% | |
| TTTCCAGCTCAGGAAGTCCA+AGG | + | tig0029145:30339-30358 | Msa1440930:CDS | 50.0% | |
| AACGAAGGGTCAAGTGGAGA+CGG | + | tig0029145:30576-30595 | Msa1440930:CDS | 50.0% | |
| GAAGCCAACTGATGGAGTGA+TGG | + | tig0029145:30815-30834 | Msa1440930:CDS | 50.0% | |
| TTGGCCATCACTCCATCAGT+TGG | - | tig0029145:30822-30841 | Msa1440930:intergenic | 50.0% | |
| !! | ATAGAGGCACTATAGCCGTG+TGG | + | tig0029145:31126-31145 | Msa1440930:intron | 50.0% |
| !! | TAGAGGCACTATAGCCGTGT+GGG | + | tig0029145:31127-31146 | Msa1440930:intron | 50.0% |
| CGGACAACTTCCTTGAAGTG+TGG | - | tig0029145:31978-31997 | Msa1440930:intergenic | 50.0% | |
| TGAACTGAACAAGCCAGCAG+AGG | + | tig0029145:32013-32032 | Msa1440930:CDS | 50.0% | |
| GAACTGAACAAGCCAGCAGA+GGG | + | tig0029145:32014-32033 | Msa1440930:CDS | 50.0% | |
| !! | CAAGGATGGTGGAGATTCAG+GGG | + | tig0029145:32061-32080 | Msa1440930:CDS | 50.0% |
| ! | GCTCGTTGATGAGATCCTCA+CGG | - | tig0029145:32088-32107 | Msa1440930:intergenic | 50.0% |
| ! | TGGTTTGTGGTGTCCTCACA+TGG | + | tig0029145:32172-32191 | Msa1440930:three_prime_UTR | 50.0% |
| TGTAGGGGGTTGACAATGAG+AGG | + | tig0029145:32292-32311 | Msa1440930:intron | 50.0% | |
| GAGAGGAAGGAGAAAGGGAT+TGG | + | tig0029145:32309-32328 | Msa1440930:intron | 50.0% | |
| AAAAGGGAGCAACTGCAGCA+TGG | - | tig0029145:32360-32379 | Msa1440930:intergenic | 50.0% | |
| AGTCCTTGGACTTCCTGAGC+TGG | - | tig0029145:30345-30364 | Msa1440930:intergenic | 55.0% | |
| ACGAAGGGTCAAGTGGAGAC+GGG | + | tig0029145:30577-30596 | Msa1440930:CDS | 55.0% | |
| TGATGGAGTGATGGCCAAGC+TGG | + | tig0029145:30824-30843 | Msa1440930:CDS | 55.0% | |
| TGGTTCAACTCTCGCCAGCT+TGG | - | tig0029145:30841-30860 | Msa1440930:intergenic | 55.0% | |
| GGGGGTTGACAATGAGAGGA+AGG | + | tig0029145:32296-32315 | Msa1440930:intron | 55.0% | |
| AGTCCTTGGACTTCCTGAGC+TGG | - | tig0029145:30345-30364 | Msa1440930:intergenic | 55.0% | |
| ACGAAGGGTCAAGTGGAGAC+GGG | + | tig0029145:30577-30596 | Msa1440930:CDS | 55.0% | |
| TGATGGAGTGATGGCCAAGC+TGG | + | tig0029145:30824-30843 | Msa1440930:CDS | 55.0% | |
| TGGTTCAACTCTCGCCAGCT+TGG | - | tig0029145:30841-30860 | Msa1440930:intergenic | 55.0% | |
| GGGGGTTGACAATGAGAGGA+AGG | + | tig0029145:32296-32315 | Msa1440930:intron | 55.0% | |
| CGAAGGGTCAAGTGGAGACG+GGG | + | tig0029145:30578-30597 | Msa1440930:CDS | 60.0% | |
| TGGAGATTCAGGGGACCGTG+AGG | + | tig0029145:32070-32089 | Msa1440930:CDS | 60.0% | |
| CGAAGGGTCAAGTGGAGACG+GGG | + | tig0029145:30578-30597 | Msa1440930:CDS | 60.0% | |
| TGGAGATTCAGGGGACCGTG+AGG | + | tig0029145:32070-32089 | Msa1440930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029145 | gene | 30201 | 32410 | 30201 | ID=Msa1440930;Name=Msa1440930 |
| tig0029145 | mRNA | 30201 | 32410 | 30201 | ID=Msa1440930-mRNA-1;Parent=Msa1440930;Name=Msa1440930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=22|1|1|1|0.8|0.66|6|258|246 |
| tig0029145 | exon | 30201 | 30408 | 30201 | ID=Msa1440930-mRNA-1:exon:12517;Parent=Msa1440930-mRNA-1 |
| tig0029145 | exon | 30554 | 30651 | 30554 | ID=Msa1440930-mRNA-1:exon:12518;Parent=Msa1440930-mRNA-1 |
| tig0029145 | exon | 30737 | 30874 | 30737 | ID=Msa1440930-mRNA-1:exon:12519;Parent=Msa1440930-mRNA-1 |
| tig0029145 | exon | 31718 | 31820 | 31718 | ID=Msa1440930-mRNA-1:exon:12520;Parent=Msa1440930-mRNA-1 |
| tig0029145 | exon | 31912 | 32292 | 31912 | ID=Msa1440930-mRNA-1:exon:12521;Parent=Msa1440930-mRNA-1 |
| tig0029145 | exon | 32318 | 32410 | 32318 | ID=Msa1440930-mRNA-1:exon:12522;Parent=Msa1440930-mRNA-1 |
| tig0029145 | five_prime_UTR | 30201 | 30222 | 30201 | ID=Msa1440930-mRNA-1:five_prime_utr;Parent=Msa1440930-mRNA-1 |
| tig0029145 | CDS | 30223 | 30408 | 30223 | ID=Msa1440930-mRNA-1:cds;Parent=Msa1440930-mRNA-1 |
| tig0029145 | CDS | 30554 | 30651 | 30554 | ID=Msa1440930-mRNA-1:cds;Parent=Msa1440930-mRNA-1 |
| tig0029145 | CDS | 30737 | 30874 | 30737 | ID=Msa1440930-mRNA-1:cds;Parent=Msa1440930-mRNA-1 |
| tig0029145 | CDS | 31718 | 31820 | 31718 | ID=Msa1440930-mRNA-1:cds;Parent=Msa1440930-mRNA-1 |
| tig0029145 | CDS | 31912 | 32127 | 31912 | ID=Msa1440930-mRNA-1:cds;Parent=Msa1440930-mRNA-1 |
| tig0029145 | three_prime_UTR | 32128 | 32292 | 32128 | ID=Msa1440930-mRNA-1:three_prime_utr;Parent=Msa1440930-mRNA-1 |
| tig0029145 | three_prime_UTR | 32318 | 32410 | 32318 | ID=Msa1440930-mRNA-1:three_prime_utr;Parent=Msa1440930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
