Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194190 | XP_003593782.1 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194190 | sp|Q8L940|PDX13_ARATH | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194190 | Q45FF2 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038150 | Msa0194190 | 0.814359 | 1.604195e-51 | -8.615850e-47 |
| Msa0066890 | Msa0194190 | 0.816395 | 5.653589e-52 | -8.615850e-47 |
| Msa0093950 | Msa0194190 | 0.815147 | 1.072938e-51 | -8.615850e-47 |
| Msa0099530 | Msa0194190 | 0.803590 | 3.241661e-49 | -8.615850e-47 |
| Msa0136870 | Msa0194190 | 0.812239 | 4.685887e-51 | -8.615850e-47 |
| Msa0148140 | Msa0194190 | 0.801371 | 9.292829e-49 | -8.615850e-47 |
| Msa0154880 | Msa0194190 | 0.807794 | 4.246564e-50 | -8.615850e-47 |
| Msa0178840 | Msa0194190 | 0.802400 | 5.712085e-49 | -8.615850e-47 |
| Msa0194190 | Msa0274310 | 0.804911 | 1.720602e-49 | -8.615850e-47 |
| Msa0194190 | Msa0421220 | 0.813333 | 2.698729e-51 | -8.615850e-47 |
| Msa0194190 | Msa0480900 | 0.833565 | 4.956898e-56 | -8.615850e-47 |
| Msa0194190 | Msa0500610 | 0.817982 | 2.485813e-52 | -8.615850e-47 |
| Msa0194190 | Msa0711110 | 0.812430 | 4.256103e-51 | -8.615850e-47 |
| Msa0194190 | Msa0742370 | 0.808714 | 2.704481e-50 | -8.615850e-47 |
| Msa0194190 | Msa0827340 | 0.818150 | 2.278228e-52 | -8.615850e-47 |
| Msa0194190 | Msa0832160 | 0.821740 | 3.438543e-53 | -8.615850e-47 |
| Msa0194190 | Msa1157860 | 0.802508 | 5.425932e-49 | -8.615850e-47 |
| Msa0194190 | Msa1207920 | 0.848423 | 6.187580e-60 | -8.615850e-47 |
| Msa0194190 | Msa1331570 | 0.830103 | 3.545550e-55 | -8.615850e-47 |
| Msa0194190 | Msa1364350 | 0.813177 | 2.920448e-51 | -8.615850e-47 |
| Msa0194190 | Msa1380180 | 0.815439 | 9.239965e-52 | -8.615850e-47 |
| Msa0194190 | Msa1384760 | 0.813356 | 2.667958e-51 | -8.615850e-47 |
| Msa0194190 | Msa1396240 | -0.800108 | 1.682407e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194190 | MtrunA17_Chr2g0284561 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Msa0194190 | MtrunA17_Chr4g0004581 | 57.616 | 302 | 105 | 4 | 1 | 301 | 1 | 280 | 1.28e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194190 | AT5G01410.2 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0194190 | AT5G01410.1 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| Msa0194190 | AT2G38230.1 | 86.943 | 314 | 36 | 2 | 1 | 314 | 1 | 309 | 0.0 | 554 |
| Msa0194190 | AT3G16050.1 | 62.939 | 313 | 107 | 3 | 2 | 313 | 9 | 313 | 3.64e-144 | 409 |
| Msa0194190 | AT2G38210.1 | 84.146 | 82 | 9 | 1 | 1 | 82 | 1 | 78 | 7.35e-39 | 132 |
Find 93 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGATCCTGAGATTT+TGG | 0.180703 | 2_1:-10057474 | Msa0194190:CDS |
| CGCTTGCGCCGTCATGGCCT+TGG | 0.264353 | 2_1:-10058131 | Msa0194190:CDS |
| TCGTCATGTGCGTTCTGTTT+TGG | 0.284365 | 2_1:-10057762 | Msa0194190:CDS |
| CCAGCAGCAAACTGCACAAC+AGG | 0.295714 | 2_1:+10057629 | None:intergenic |
| GACGGAGAATGGAGAGGATT+TGG | 0.304132 | 2_1:+10058240 | None:intergenic |
| TTCCGTATTCCTTTCGTTTG+TGG | 0.320480 | 2_1:-10057884 | Msa0194190:CDS |
| CCTGTTGTGCAGTTTGCTGC+TGG | 0.331604 | 2_1:-10057629 | Msa0194190:CDS |
| GGCTGAGGTTAGTTGTGGAT+TGG | 0.349556 | 2_1:-10057453 | Msa0194190:CDS |
| GGTGGTGGTGGAGGTTGTTT+CGG | 0.349577 | 2_1:+10058261 | None:intergenic |
| TGGCAGCACCTTCGCGAATT+CGG | 0.351479 | 2_1:+10057834 | None:intergenic |
| ATGTTGAGAGGTTTGCTAAT+AGG | 0.372798 | 2_1:-10057394 | Msa0194190:CDS |
| AGAGGATTTGGTGGTGGTGG+AGG | 0.382080 | 2_1:+10058252 | None:intergenic |
| CCTTGAGCGCGGATGTCGGC+GGG | 0.383754 | 2_1:+10058100 | None:intergenic |
| GCTGAGGTTAGTTGTGGATT+GGG | 0.403929 | 2_1:-10057452 | Msa0194190:CDS |
| TGGAGAGGATTTGGTGGTGG+TGG | 0.418470 | 2_1:+10058249 | None:intergenic |
| GGCCATGACGGCGCAAGCGC+CGG | 0.420801 | 2_1:+10058135 | None:intergenic |
| TTCAGCGATACGAGCTTGTT+CGG | 0.421940 | 2_1:+10058162 | None:intergenic |
| TCCAGTACCAGCTTCACCTT+TGG | 0.422451 | 2_1:+10057802 | None:intergenic |
| TTCACCTTTGGTACGAATCA+TGG | 0.424363 | 2_1:+10057814 | None:intergenic |
| TTGATTTCTTTGATGAGTTG+AGG | 0.426615 | 2_1:+10058055 | None:intergenic |
| TTGTGGATTGGGTGAAGCTA+TGG | 0.447883 | 2_1:-10057441 | Msa0194190:CDS |
| TGATTTCTTTGATGAGTTGA+GGG | 0.448026 | 2_1:+10058056 | None:intergenic |
| ATCCACAAACGAAAGGAATA+CGG | 0.461782 | 2_1:+10057882 | None:intergenic |
| AATCGATTCCGAGAGATTCA+AGG | 0.462482 | 2_1:+10057969 | None:intergenic |
| CCCCTCACCATGGAAGGATC+TGG | 0.462611 | 2_1:-10058316 | None:intergenic |
| TGTGGCCACACCGGCGGATG+CGG | 0.463210 | 2_1:-10057603 | Msa0194190:CDS |
| AGGCCGACTTTGACGGAGAA+TGG | 0.467202 | 2_1:+10058229 | None:intergenic |
| ACCAAAGGTGAAGCTGGTAC+TGG | 0.471439 | 2_1:-10057803 | Msa0194190:CDS |
| TCTGGAGTCGTAACCGTCTA+CGG | 0.474266 | 2_1:-10058298 | Msa0194190:CDS |
| GTCTGCATAACAAGATCATA+AGG | 0.475122 | 2_1:+10057671 | None:intergenic |
| GGATTGGGTGAAGCTATGGT+TGG | 0.476308 | 2_1:-10057437 | Msa0194190:CDS |
| ATGATGCAGCTTGGCTGTGA+TGG | 0.478118 | 2_1:-10057575 | Msa0194190:CDS |
| ATCATCAACGCCGCATCCGC+CGG | 0.489068 | 2_1:+10057593 | None:intergenic |
| GAAATGACCGATACGAGCTT+TGG | 0.495581 | 2_1:+10058006 | None:intergenic |
| ATACGAGCTTTGGCCATGAC+AGG | 0.496509 | 2_1:+10058016 | None:intergenic |
| GCCTTGAGCGCGGATGTCGG+CGG | 0.499487 | 2_1:+10058099 | None:intergenic |
| TGTGTTTAAGAGTGGGGATC+CGG | 0.500830 | 2_1:-10057534 | Msa0194190:CDS |
| TGTGGTTATCTTCATCAGCT+AGG | 0.500838 | 2_1:+10057921 | None:intergenic |
| CCCGCCGACATCCGCGCTCA+AGG | 0.502035 | 2_1:-10058100 | Msa0194190:CDS |
| GATTGGGTGAAGCTATGGTT+GGG | 0.502093 | 2_1:-10057436 | Msa0194190:CDS |
| GCTCCGCGGCGGTGTCATCA+TGG | 0.504945 | 2_1:-10058197 | Msa0194190:CDS |
| TTGAGCGAGGCCGACTTTGA+CGG | 0.505616 | 2_1:+10058222 | None:intergenic |
| GGTTCTGGTGTGTTTAAGAG+TGG | 0.505931 | 2_1:-10057542 | Msa0194190:CDS |
| AGCCGGCGCTTGCGCCGTCA+TGG | 0.506739 | 2_1:-10058137 | Msa0194190:CDS |
| TTCTTTGATGAGTTGAGGGT+CGG | 0.509203 | 2_1:+10058060 | None:intergenic |
| GTTGTGCAGTTTGCTGCTGG+TGG | 0.515305 | 2_1:-10057626 | Msa0194190:CDS |
| GTTCTGGTGTGTTTAAGAGT+GGG | 0.517289 | 2_1:-10057541 | Msa0194190:CDS |
| GCCGCCTTGAGCGCGGATGT+CGG | 0.518062 | 2_1:+10058096 | None:intergenic |
| GCTCGTATCGCTGAAGAAGC+CGG | 0.522227 | 2_1:-10058154 | Msa0194190:CDS |
| CTAACCTCAGCCAAAATCTC+AGG | 0.523396 | 2_1:+10057464 | None:intergenic |
| CGCCGTCACCATCCCTGTCA+TGG | 0.523650 | 2_1:-10058029 | Msa0194190:CDS |
| GGAAATTGTGTTTGTTGATG+TGG | 0.524477 | 2_1:+10057903 | None:intergenic |
| GAGGAATATGGATGAAGATG+AGG | 0.532603 | 2_1:-10057723 | Msa0194190:CDS |
| ATTCGTACCAAAGGTGAAGC+TGG | 0.543654 | 2_1:-10057809 | Msa0194190:CDS |
| GGAGAATGGAGAGGATTTGG+TGG | 0.543837 | 2_1:+10058243 | None:intergenic |
| GGCCATGACAGGGATGGTGA+CGG | 0.547780 | 2_1:+10058027 | None:intergenic |
| GCTCAGATCCTTGAATCTCT+CGG | 0.554374 | 2_1:-10057977 | Msa0194190:CDS |
| GCGGCGTTGATGATGCAGCT+TGG | 0.554498 | 2_1:-10057584 | Msa0194190:CDS |
| GTGGTTATCTTCATCAGCTA+GGG | 0.560345 | 2_1:+10057922 | None:intergenic |
| GCAGTTTGCTGCTGGTGGTG+TGG | 0.561145 | 2_1:-10057621 | Msa0194190:CDS |
| GAATGGAGAGGATTTGGTGG+TGG | 0.564907 | 2_1:+10058246 | None:intergenic |
| GTTATGCAGACTAAGCAACT+TGG | 0.570305 | 2_1:-10057659 | Msa0194190:CDS |
| GAGTGCACCGTTGCCGTAGA+CGG | 0.571653 | 2_1:+10058285 | None:intergenic |
| GTCGTAACCGTCTACGGCAA+CGG | 0.572232 | 2_1:-10058292 | Msa0194190:CDS |
| TTCTGGTGTGTTTAAGAGTG+GGG | 0.572350 | 2_1:-10057540 | Msa0194190:CDS |
| TGCTGGTGGTGTGGCCACAC+CGG | 0.573690 | 2_1:-10057612 | Msa0194190:CDS |
| GAGCAACGCCGCCTTGAGCG+CGG | 0.578549 | 2_1:+10058089 | None:intergenic |
| GTTTGTGGATGTCGTAACCT+TGG | 0.585204 | 2_1:-10057869 | Msa0194190:CDS |
| GACACGCTCCAAGGCCATGA+CGG | 0.586431 | 2_1:+10058123 | None:intergenic |
| TCTCCATTCTCCGTCAAAGT+CGG | 0.595972 | 2_1:-10058232 | Msa0194190:CDS |
| CAACGCCGCATCCGCCGGTG+TGG | 0.598322 | 2_1:+10057598 | None:intergenic |
| GTCATGGCCAAAGCTCGTAT+CGG | 0.604175 | 2_1:-10058013 | Msa0194190:CDS |
| CTCGCTCAAATGCTCCGCGG+CGG | 0.607268 | 2_1:-10058208 | Msa0194190:CDS |
| TGACTGATCATAATGTTGAG+AGG | 0.607276 | 2_1:-10057406 | Msa0194190:CDS |
| GACTTTGACGGAGAATGGAG+AGG | 0.609447 | 2_1:+10058234 | None:intergenic |
| GGGATCCGGCGAAAAGAGCG+AGG | 0.611909 | 2_1:-10057520 | Msa0194190:CDS |
| TACGAGCTTTGGCCATGACA+GGG | 0.619481 | 2_1:+10058017 | None:intergenic |
| AGCTTTGGCCATGACAGGGA+TGG | 0.623887 | 2_1:+10058021 | None:intergenic |
| GTCGGCGGGGACACGCTCCA+AGG | 0.628734 | 2_1:+10058114 | None:intergenic |
| GCCGACATCCGCGCTCAAGG+CGG | 0.633654 | 2_1:-10058097 | Msa0194190:CDS |
| TACGACTCCAGATCCTTCCA+TGG | 0.634536 | 2_1:+10058309 | None:intergenic |
| TGGTGGTGTGGCCACACCGG+CGG | 0.638250 | 2_1:-10057609 | Msa0194190:CDS |
| GCTGCCATGATTCGTACCAA+AGG | 0.643185 | 2_1:-10057818 | Msa0194190:CDS |
| CGCCGCGGAGCATTTGAGCG+AGG | 0.643339 | 2_1:+10058209 | None:intergenic |
| GCTCTTCGCCGAATTCGCGA+AGG | 0.649209 | 2_1:-10057842 | Msa0194190:CDS |
| TGCAGACTAAGCAACTTGGA+AGG | 0.649819 | 2_1:-10057655 | Msa0194190:CDS |
| CATGACAGGGATGGTGACGG+CGG | 0.652699 | 2_1:+10058030 | None:intergenic |
| TTACGACATCCACAAACGAA+AGG | 0.660142 | 2_1:+10057875 | None:intergenic |
| CTTGAGCGCGGATGTCGGCG+GGG | 0.673216 | 2_1:+10058101 | None:intergenic |
| GGATCCGGCGAAAAGAGCGA+GGG | 0.694405 | 2_1:-10057519 | Msa0194190:CDS |
| TTCGGCGAAGAGCTTCACCA+AGG | 0.695720 | 2_1:+10057852 | None:intergenic |
| GGCCTCGCTCAAATGCTCCG+CGG | 0.749927 | 2_1:-10058211 | Msa0194190:CDS |
| CGTCCATGATGACACCGCCG+CGG | 0.762873 | 2_1:+10058194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCACTTTTGCTAAGAAAAT+TGG | - | chr2_1:10057994-10058013 | Msa0194190:CDS | 25.0% |
| !!! | TTCACTTTTGCTAAGAAAAT+TGG | - | chr2_1:10057994-10058013 | Msa0194190:CDS | 25.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | + | chr2_1:10057639-10057658 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | + | chr2_1:10057640-10057659 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | - | chr2_1:10057942-10057961 | Msa0194190:CDS | 30.0% |
| !!! | TATTAGGGTTTTGAGGAATA+TGG | - | chr2_1:10057957-10057976 | Msa0194190:CDS | 30.0% |
| ! | TGATTTCTTTGATGAGTTGA+GGG | + | chr2_1:10057639-10057658 | None:intergenic | 30.0% |
| TTGATTTCTTTGATGAGTTG+AGG | + | chr2_1:10057640-10057659 | None:intergenic | 30.0% | |
| !! | TTCTGTTTTGGGTGATATTA+GGG | - | chr2_1:10057942-10057961 | Msa0194190:CDS | 30.0% |
| !!! | TATTAGGGTTTTGAGGAATA+TGG | - | chr2_1:10057957-10057976 | Msa0194190:CDS | 30.0% |
| ! | GGAAATTGTGTTTGTTGATG+TGG | + | chr2_1:10057792-10057811 | None:intergenic | 35.0% |
| ATCCACAAACGAAAGGAATA+CGG | + | chr2_1:10057813-10057832 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTTGGGTGATATT+AGG | - | chr2_1:10057941-10057960 | Msa0194190:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | + | chr2_1:10058024-10058043 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | - | chr2_1:10058218-10058237 | Msa0194190:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | - | chr2_1:10058286-10058305 | Msa0194190:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | - | chr2_1:10058298-10058317 | Msa0194190:CDS | 35.0% |
| ! | GGAAATTGTGTTTGTTGATG+TGG | + | chr2_1:10057792-10057811 | None:intergenic | 35.0% |
| ATCCACAAACGAAAGGAATA+CGG | + | chr2_1:10057813-10057832 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTTGGGTGATATT+AGG | - | chr2_1:10057941-10057960 | Msa0194190:CDS | 35.0% |
| GTCTGCATAACAAGATCATA+AGG | + | chr2_1:10058024-10058043 | None:intergenic | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | - | chr2_1:10058218-10058237 | Msa0194190:CDS | 35.0% |
| TGACTGATCATAATGTTGAG+AGG | - | chr2_1:10058286-10058305 | Msa0194190:CDS | 35.0% | |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | - | chr2_1:10058298-10058317 | Msa0194190:CDS | 35.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | + | chr2_1:10057635-10057654 | None:intergenic | 40.0% |
| ! | AATCGATTCCGAGAGATTCA+AGG | + | chr2_1:10057726-10057745 | None:intergenic | 40.0% |
| GTGGTTATCTTCATCAGCTA+GGG | + | chr2_1:10057773-10057792 | None:intergenic | 40.0% | |
| TGTGGTTATCTTCATCAGCT+AGG | + | chr2_1:10057774-10057793 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | - | chr2_1:10057808-10057827 | Msa0194190:CDS | 40.0% | |
| TTACGACATCCACAAACGAA+AGG | + | chr2_1:10057820-10057839 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | + | chr2_1:10057881-10057900 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | - | chr2_1:10057950-10057969 | Msa0194190:CDS | 40.0% |
| GAGGAATATGGATGAAGATG+AGG | - | chr2_1:10057969-10057988 | Msa0194190:CDS | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | - | chr2_1:10058033-10058052 | Msa0194190:CDS | 40.0% | |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | - | chr2_1:10058135-10058154 | Msa0194190:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | - | chr2_1:10058151-10058170 | Msa0194190:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | - | chr2_1:10058152-10058171 | Msa0194190:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | - | chr2_1:10058234-10058253 | Msa0194190:CDS | 40.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | + | chr2_1:10057635-10057654 | None:intergenic | 40.0% |
| ! | AATCGATTCCGAGAGATTCA+AGG | + | chr2_1:10057726-10057745 | None:intergenic | 40.0% |
| GTGGTTATCTTCATCAGCTA+GGG | + | chr2_1:10057773-10057792 | None:intergenic | 40.0% | |
| TGTGGTTATCTTCATCAGCT+AGG | + | chr2_1:10057774-10057793 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | - | chr2_1:10057808-10057827 | Msa0194190:CDS | 40.0% | |
| TTACGACATCCACAAACGAA+AGG | + | chr2_1:10057820-10057839 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | + | chr2_1:10057881-10057900 | None:intergenic | 40.0% | |
| ! | TGGGTGATATTAGGGTTTTG+AGG | - | chr2_1:10057950-10057969 | Msa0194190:CDS | 40.0% |
| GAGGAATATGGATGAAGATG+AGG | - | chr2_1:10057969-10057988 | Msa0194190:CDS | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | - | chr2_1:10058033-10058052 | Msa0194190:CDS | 40.0% | |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | - | chr2_1:10058135-10058154 | Msa0194190:CDS | 40.0% |
| GTTCTGGTGTGTTTAAGAGT+GGG | - | chr2_1:10058151-10058170 | Msa0194190:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | - | chr2_1:10058152-10058171 | Msa0194190:CDS | 40.0% | |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | - | chr2_1:10058234-10058253 | Msa0194190:CDS | 40.0% |
| TCTCCATTCTCCGTCAAAGT+CGG | - | chr2_1:10057460-10057479 | Msa0194190:CDS | 45.0% | |
| ! | TTCAGCGATACGAGCTTGTT+CGG | + | chr2_1:10057533-10057552 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | + | chr2_1:10057689-10057708 | None:intergenic | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | - | chr2_1:10057715-10057734 | Msa0194190:CDS | 45.0% | |
| GTTTGTGGATGTCGTAACCT+TGG | - | chr2_1:10057823-10057842 | Msa0194190:CDS | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | - | chr2_1:10057883-10057902 | Msa0194190:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | - | chr2_1:10057930-10057949 | Msa0194190:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | - | chr2_1:10057931-10057950 | Msa0194190:CDS | 45.0% |
| TGCAGACTAAGCAACTTGGA+AGG | - | chr2_1:10058037-10058056 | Msa0194190:CDS | 45.0% | |
| !! | GGCTGTGATGGTGTTTTTGT+TGG | - | chr2_1:10058129-10058148 | Msa0194190:CDS | 45.0% |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | - | chr2_1:10058150-10058169 | Msa0194190:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | - | chr2_1:10058158-10058177 | Msa0194190:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | - | chr2_1:10058224-10058243 | Msa0194190:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | + | chr2_1:10058231-10058250 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | - | chr2_1:10058240-10058259 | Msa0194190:CDS | 45.0% |
| !! | TTGTGGATTGGGTGAAGCTA+TGG | - | chr2_1:10058251-10058270 | Msa0194190:CDS | 45.0% |
| GATTGGGTGAAGCTATGGTT+GGG | - | chr2_1:10058256-10058275 | Msa0194190:CDS | 45.0% | |
| TCTCCATTCTCCGTCAAAGT+CGG | - | chr2_1:10057460-10057479 | Msa0194190:CDS | 45.0% | |
| ! | TTCAGCGATACGAGCTTGTT+CGG | + | chr2_1:10057533-10057552 | None:intergenic | 45.0% |
| GAAATGACCGATACGAGCTT+TGG | + | chr2_1:10057689-10057708 | None:intergenic | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | - | chr2_1:10057715-10057734 | Msa0194190:CDS | 45.0% | |
| GTTTGTGGATGTCGTAACCT+TGG | - | chr2_1:10057823-10057842 | Msa0194190:CDS | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | - | chr2_1:10057883-10057902 | Msa0194190:CDS | 45.0% | |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | - | chr2_1:10057930-10057949 | Msa0194190:CDS | 45.0% |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | - | chr2_1:10057931-10057950 | Msa0194190:CDS | 45.0% |
| TGCAGACTAAGCAACTTGGA+AGG | - | chr2_1:10058037-10058056 | Msa0194190:CDS | 45.0% | |
| !! | GGCTGTGATGGTGTTTTTGT+TGG | - | chr2_1:10058129-10058148 | Msa0194190:CDS | 45.0% |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | - | chr2_1:10058150-10058169 | Msa0194190:CDS | 45.0% |
| TGTGTTTAAGAGTGGGGATC+CGG | - | chr2_1:10058158-10058177 | Msa0194190:CDS | 45.0% | |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | - | chr2_1:10058224-10058243 | Msa0194190:CDS | 45.0% |
| CTAACCTCAGCCAAAATCTC+AGG | + | chr2_1:10058231-10058250 | None:intergenic | 45.0% | |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | - | chr2_1:10058240-10058259 | Msa0194190:CDS | 45.0% |
| !! | TTGTGGATTGGGTGAAGCTA+TGG | - | chr2_1:10058251-10058270 | Msa0194190:CDS | 45.0% |
| GATTGGGTGAAGCTATGGTT+GGG | - | chr2_1:10058256-10058275 | Msa0194190:CDS | 45.0% | |
| ! | TCTGGAGTCGTAACCGTCTA+CGG | - | chr2_1:10057394-10057413 | Msa0194190:CDS | 50.0% |
| !! | GAATGGAGAGGATTTGGTGG+TGG | + | chr2_1:10057449-10057468 | None:intergenic | 50.0% |
| GGAGAATGGAGAGGATTTGG+TGG | + | chr2_1:10057452-10057471 | None:intergenic | 50.0% | |
| GACGGAGAATGGAGAGGATT+TGG | + | chr2_1:10057455-10057474 | None:intergenic | 50.0% | |
| GACTTTGACGGAGAATGGAG+AGG | + | chr2_1:10057461-10057480 | None:intergenic | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | + | chr2_1:10057678-10057697 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | + | chr2_1:10057679-10057698 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | - | chr2_1:10057679-10057698 | Msa0194190:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | - | chr2_1:10057874-10057893 | Msa0194190:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | - | chr2_1:10057889-10057908 | Msa0194190:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | + | chr2_1:10057893-10057912 | None:intergenic | 50.0% | |
| ATGATGCAGCTTGGCTGTGA+TGG | - | chr2_1:10058117-10058136 | Msa0194190:CDS | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | - | chr2_1:10058239-10058258 | Msa0194190:CDS | 50.0% |
| GGATTGGGTGAAGCTATGGT+TGG | - | chr2_1:10058255-10058274 | Msa0194190:CDS | 50.0% | |
| ! | TCTGGAGTCGTAACCGTCTA+CGG | - | chr2_1:10057394-10057413 | Msa0194190:CDS | 50.0% |
| !! | GAATGGAGAGGATTTGGTGG+TGG | + | chr2_1:10057449-10057468 | None:intergenic | 50.0% |
| GGAGAATGGAGAGGATTTGG+TGG | + | chr2_1:10057452-10057471 | None:intergenic | 50.0% | |
| GACGGAGAATGGAGAGGATT+TGG | + | chr2_1:10057455-10057474 | None:intergenic | 50.0% | |
| GACTTTGACGGAGAATGGAG+AGG | + | chr2_1:10057461-10057480 | None:intergenic | 50.0% | |
| ! | TACGAGCTTTGGCCATGACA+GGG | + | chr2_1:10057678-10057697 | None:intergenic | 50.0% |
| ! | ATACGAGCTTTGGCCATGAC+AGG | + | chr2_1:10057679-10057698 | None:intergenic | 50.0% |
| GTCATGGCCAAAGCTCGTAT+CGG | - | chr2_1:10057679-10057698 | Msa0194190:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | - | chr2_1:10057874-10057893 | Msa0194190:CDS | 50.0% | |
| ACCAAAGGTGAAGCTGGTAC+TGG | - | chr2_1:10057889-10057908 | Msa0194190:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | + | chr2_1:10057893-10057912 | None:intergenic | 50.0% | |
| ATGATGCAGCTTGGCTGTGA+TGG | - | chr2_1:10058117-10058136 | Msa0194190:CDS | 50.0% | |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | - | chr2_1:10058239-10058258 | Msa0194190:CDS | 50.0% |
| GGATTGGGTGAAGCTATGGT+TGG | - | chr2_1:10058255-10058274 | Msa0194190:CDS | 50.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | - | chr2_1:10057400-10057419 | Msa0194190:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | + | chr2_1:10057434-10057453 | None:intergenic | 55.0% |
| !! | AGAGGATTTGGTGGTGGTGG+AGG | + | chr2_1:10057443-10057462 | None:intergenic | 55.0% |
| !! | TGGAGAGGATTTGGTGGTGG+TGG | + | chr2_1:10057446-10057465 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | + | chr2_1:10057466-10057485 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | + | chr2_1:10057473-10057492 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | - | chr2_1:10057538-10057557 | Msa0194190:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | + | chr2_1:10057674-10057693 | None:intergenic | 55.0% |
| TTCGGCGAAGAGCTTCACCA+AGG | + | chr2_1:10057843-10057862 | None:intergenic | 55.0% | |
| TGGCAGCACCTTCGCGAATT+CGG | + | chr2_1:10057861-10057880 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | + | chr2_1:10058066-10058085 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | - | chr2_1:10058063-10058082 | Msa0194190:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | - | chr2_1:10058066-10058085 | Msa0194190:CDS | 55.0% |
| GTCGTAACCGTCTACGGCAA+CGG | - | chr2_1:10057400-10057419 | Msa0194190:CDS | 55.0% | |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | + | chr2_1:10057434-10057453 | None:intergenic | 55.0% |
| !! | AGAGGATTTGGTGGTGGTGG+AGG | + | chr2_1:10057443-10057462 | None:intergenic | 55.0% |
| !! | TGGAGAGGATTTGGTGGTGG+TGG | + | chr2_1:10057446-10057465 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | + | chr2_1:10057466-10057485 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | + | chr2_1:10057473-10057492 | None:intergenic | 55.0% |
| GCTCGTATCGCTGAAGAAGC+CGG | - | chr2_1:10057538-10057557 | Msa0194190:CDS | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | + | chr2_1:10057674-10057693 | None:intergenic | 55.0% |
| TTCGGCGAAGAGCTTCACCA+AGG | + | chr2_1:10057843-10057862 | None:intergenic | 55.0% | |
| TGGCAGCACCTTCGCGAATT+CGG | + | chr2_1:10057861-10057880 | None:intergenic | 55.0% | |
| CCAGCAGCAAACTGCACAAC+AGG | + | chr2_1:10058066-10058085 | None:intergenic | 55.0% | |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | - | chr2_1:10058063-10058082 | Msa0194190:CDS | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | - | chr2_1:10058066-10058085 | Msa0194190:CDS | 55.0% |
| GAGTGCACCGTTGCCGTAGA+CGG | + | chr2_1:10057410-10057429 | None:intergenic | 60.0% | |
| GACACGCTCCAAGGCCATGA+CGG | + | chr2_1:10057572-10057591 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | + | chr2_1:10057665-10057684 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | + | chr2_1:10057668-10057687 | None:intergenic | 60.0% | |
| GCTCTTCGCCGAATTCGCGA+AGG | - | chr2_1:10057850-10057869 | Msa0194190:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | - | chr2_1:10058071-10058090 | Msa0194190:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | + | chr2_1:10058102-10058121 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | - | chr2_1:10058108-10058127 | Msa0194190:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | - | chr2_1:10058173-10058192 | Msa0194190:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | + | chr2_1:10058180-10058199 | None:intergenic | 60.0% |
| GAGTGCACCGTTGCCGTAGA+CGG | + | chr2_1:10057410-10057429 | None:intergenic | 60.0% | |
| GACACGCTCCAAGGCCATGA+CGG | + | chr2_1:10057572-10057591 | None:intergenic | 60.0% | |
| !! | CATGACAGGGATGGTGACGG+CGG | + | chr2_1:10057665-10057684 | None:intergenic | 60.0% |
| GGCCATGACAGGGATGGTGA+CGG | + | chr2_1:10057668-10057687 | None:intergenic | 60.0% | |
| GCTCTTCGCCGAATTCGCGA+AGG | - | chr2_1:10057850-10057869 | Msa0194190:CDS | 60.0% | |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | - | chr2_1:10058071-10058090 | Msa0194190:CDS | 60.0% |
| ATCATCAACGCCGCATCCGC+CGG | + | chr2_1:10058102-10058121 | None:intergenic | 60.0% | |
| !! | GCGGCGTTGATGATGCAGCT+TGG | - | chr2_1:10058108-10058127 | Msa0194190:CDS | 60.0% |
| GGATCCGGCGAAAAGAGCGA+GGG | - | chr2_1:10058173-10058192 | Msa0194190:CDS | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | + | chr2_1:10058180-10058199 | None:intergenic | 60.0% |
| GGCCTCGCTCAAATGCTCCG+CGG | - | chr2_1:10057481-10057500 | Msa0194190:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | - | chr2_1:10057484-10057503 | Msa0194190:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | + | chr2_1:10057501-10057520 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | - | chr2_1:10057663-10057682 | Msa0194190:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCCACAC+CGG | - | chr2_1:10058080-10058099 | Msa0194190:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | - | chr2_1:10058172-10058191 | Msa0194190:CDS | 65.0% | |
| GGCCTCGCTCAAATGCTCCG+CGG | - | chr2_1:10057481-10057500 | Msa0194190:CDS | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | - | chr2_1:10057484-10057503 | Msa0194190:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | + | chr2_1:10057501-10057520 | None:intergenic | 65.0% | |
| CGCCGTCACCATCCCTGTCA+TGG | - | chr2_1:10057663-10057682 | Msa0194190:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCCACAC+CGG | - | chr2_1:10058080-10058099 | Msa0194190:CDS | 65.0% |
| GGGATCCGGCGAAAAGAGCG+AGG | - | chr2_1:10058172-10058191 | Msa0194190:CDS | 65.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | + | chr2_1:10057486-10057505 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | - | chr2_1:10057495-10057514 | Msa0194190:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | - | chr2_1:10057561-10057580 | Msa0194190:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | + | chr2_1:10057594-10057613 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | + | chr2_1:10057595-10057614 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | + | chr2_1:10057596-10057615 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | - | chr2_1:10057595-10057614 | Msa0194190:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | + | chr2_1:10057599-10057618 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | + | chr2_1:10057606-10057625 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCCACACCGG+CGG | - | chr2_1:10058083-10058102 | Msa0194190:CDS | 70.0% |
| TGTGGCCACACCGGCGGATG+CGG | - | chr2_1:10058089-10058108 | Msa0194190:CDS | 70.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | + | chr2_1:10057486-10057505 | None:intergenic | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | - | chr2_1:10057495-10057514 | Msa0194190:CDS | 70.0% |
| CGCTTGCGCCGTCATGGCCT+TGG | - | chr2_1:10057561-10057580 | Msa0194190:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | + | chr2_1:10057594-10057613 | None:intergenic | 70.0% | |
| CCTTGAGCGCGGATGTCGGC+GGG | + | chr2_1:10057595-10057614 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | + | chr2_1:10057596-10057615 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | - | chr2_1:10057595-10057614 | Msa0194190:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | + | chr2_1:10057599-10057618 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | + | chr2_1:10057606-10057625 | None:intergenic | 70.0% | |
| ! | TGGTGGTGTGGCCACACCGG+CGG | - | chr2_1:10058083-10058102 | Msa0194190:CDS | 70.0% |
| TGTGGCCACACCGGCGGATG+CGG | - | chr2_1:10058089-10058108 | Msa0194190:CDS | 70.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | - | chr2_1:10057555-10057574 | Msa0194190:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | + | chr2_1:10057560-10057579 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | + | chr2_1:10057581-10057600 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | - | chr2_1:10057592-10057611 | Msa0194190:CDS | 75.0% | |
| CAACGCCGCATCCGCCGGTG+TGG | + | chr2_1:10058097-10058116 | None:intergenic | 75.0% | |
| AGCCGGCGCTTGCGCCGTCA+TGG | - | chr2_1:10057555-10057574 | Msa0194190:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | + | chr2_1:10057560-10057579 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | + | chr2_1:10057581-10057600 | None:intergenic | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | - | chr2_1:10057592-10057611 | Msa0194190:CDS | 75.0% | |
| CAACGCCGCATCCGCCGGTG+TGG | + | chr2_1:10058097-10058116 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10057385 | 10058329 | 10057385 | ID=Msa0194190;Name=Msa0194190 |
| chr2_1 | mRNA | 10057385 | 10058329 | 10057385 | ID=Msa0194190-mRNA-1;Parent=Msa0194190;Name=Msa0194190-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|314 |
| chr2_1 | exon | 10057385 | 10058329 | 10057385 | ID=Msa0194190-mRNA-1:exon:4565;Parent=Msa0194190-mRNA-1 |
| chr2_1 | CDS | 10057385 | 10058329 | 10057385 | ID=Msa0194190-mRNA-1:cds;Parent=Msa0194190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
