Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108760 | sp|Q8GUU2|RIE1_ARATH | 71.176 | 170 | 49 | 0 | 1 | 170 | 186 | 355 | 2.27e-86 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108760 | A0A072VGQ3 | 97.688 | 173 | 4 | 0 | 1 | 173 | 178 | 350 | 1.47e-122 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012200 | Msa0108760 | 0.908895 | 1.036518e-81 | -8.615850e-47 |
| Msa0051960 | Msa0108760 | 0.807403 | 5.141492e-50 | -8.615850e-47 |
| Msa0061220 | Msa0108760 | 0.887606 | 1.230645e-72 | -8.615850e-47 |
| Msa0077370 | Msa0108760 | 0.813813 | 2.116620e-51 | -8.615850e-47 |
| Msa0082420 | Msa0108760 | 0.802347 | 5.857202e-49 | -8.615850e-47 |
| Msa0093950 | Msa0108760 | -0.808996 | 2.353655e-50 | -8.615850e-47 |
| Msa0099910 | Msa0108760 | 0.807705 | 4.436492e-50 | -8.615850e-47 |
| Msa0101500 | Msa0108760 | -0.803895 | 2.802156e-49 | -8.615850e-47 |
| Msa0101960 | Msa0108760 | 0.821666 | 3.576034e-53 | -8.615850e-47 |
| Msa0108760 | Msa0113370 | -0.829293 | 5.582619e-55 | -8.615850e-47 |
| Msa0108760 | Msa0115790 | 0.843810 | 1.114574e-58 | -8.615850e-47 |
| Msa0108760 | Msa0117520 | 0.828928 | 6.845597e-55 | -8.615850e-47 |
| Msa0108760 | Msa0148080 | 0.802398 | 5.718914e-49 | -8.615850e-47 |
| Msa0108760 | Msa0160960 | 0.822361 | 2.468731e-53 | -8.615850e-47 |
| Msa0108760 | Msa0220400 | -0.834900 | 2.293297e-56 | -8.615850e-47 |
| Msa0108760 | Msa0236920 | 0.803284 | 3.751393e-49 | -8.615850e-47 |
| Msa0108760 | Msa0274310 | -0.809144 | 2.187335e-50 | -8.615850e-47 |
| Msa0108760 | Msa0282780 | 0.817173 | 3.782061e-52 | -8.615850e-47 |
| Msa0108760 | Msa0287870 | 0.812182 | 4.821233e-51 | -8.615850e-47 |
| Msa0108760 | Msa0316390 | 0.804571 | 2.026215e-49 | -8.615850e-47 |
| Msa0108760 | Msa0370580 | -0.804025 | 2.633463e-49 | -8.615850e-47 |
| Msa0108760 | Msa0374340 | -0.802816 | 4.688907e-49 | -8.615850e-47 |
| Msa0108760 | Msa0403470 | -0.807510 | 4.880772e-50 | -8.615850e-47 |
| Msa0108760 | Msa0527540 | 0.857563 | 1.498958e-62 | -8.615850e-47 |
| Msa0108760 | Msa0529000 | 0.806339 | 8.632728e-50 | -8.615850e-47 |
| Msa0108760 | Msa0531530 | 0.804399 | 2.201205e-49 | -8.615850e-47 |
| Msa0108760 | Msa0545050 | 0.838706 | 2.451725e-57 | -8.615850e-47 |
| Msa0108760 | Msa0548650 | -0.807071 | 6.044705e-50 | -8.615850e-47 |
| Msa0108760 | Msa0567370 | 0.811888 | 5.587473e-51 | -8.615850e-47 |
| Msa0108760 | Msa0567520 | 0.804800 | 1.815079e-49 | -8.615850e-47 |
| Msa0108760 | Msa0574930 | 0.827505 | 1.507795e-54 | -8.615850e-47 |
| Msa0108760 | Msa0587120 | 0.808492 | 3.015953e-50 | -8.615850e-47 |
| Msa0108760 | Msa0592330 | 0.806962 | 6.375454e-50 | -8.615850e-47 |
| Msa0108760 | Msa0600590 | 0.841187 | 5.531199e-58 | -8.615850e-47 |
| Msa0108760 | Msa0604290 | 0.806309 | 8.755750e-50 | -8.615850e-47 |
| Msa0108760 | Msa0641130 | 0.839509 | 1.518822e-57 | -8.615850e-47 |
| Msa0108760 | Msa0703810 | 0.819663 | 1.031974e-52 | -8.615850e-47 |
| Msa0108760 | Msa0744640 | 0.831845 | 1.325014e-55 | -8.615850e-47 |
| Msa0108760 | Msa0841730 | 0.831437 | 1.670120e-55 | -8.615850e-47 |
| Msa0108760 | Msa0863990 | 0.819661 | 1.032949e-52 | -8.615850e-47 |
| Msa0108760 | Msa0870510 | 0.811057 | 8.467445e-51 | -8.615850e-47 |
| Msa0108760 | Msa0968470 | -0.809413 | 1.915992e-50 | -8.615850e-47 |
| Msa0108760 | Msa1031660 | 0.801932 | 7.131539e-49 | -8.615850e-47 |
| Msa0108760 | Msa1061740 | 0.812710 | 3.697020e-51 | -8.615850e-47 |
| Msa0108760 | Msa1117240 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0108760 | Msa1122150 | 0.828119 | 1.072970e-54 | -8.615850e-47 |
| Msa0108760 | Msa1140630 | 0.801942 | 7.097626e-49 | -8.615850e-47 |
| Msa0108760 | Msa1160560 | 0.816867 | 4.430772e-52 | -8.615850e-47 |
| Msa0108760 | Msa1175100 | 0.806059 | 9.887170e-50 | -8.615850e-47 |
| Msa0108760 | Msa1211230 | -0.801185 | 1.014616e-48 | -8.615850e-47 |
| Msa0108760 | Msa1234470 | 0.802065 | 6.695002e-49 | -8.615850e-47 |
| Msa0108760 | Msa1236440 | 0.800822 | 1.203459e-48 | -8.615850e-47 |
| Msa0108760 | Msa1256060 | 0.804877 | 1.749258e-49 | -8.615850e-47 |
| Msa0108760 | Msa1277670 | 0.804358 | 2.244183e-49 | -8.615850e-47 |
| Msa0108760 | Msa1298390 | -0.811270 | 7.612770e-51 | -8.615850e-47 |
| Msa0108760 | Msa1299400 | -0.803448 | 3.469568e-49 | -8.615850e-47 |
| Msa0108760 | Msa1331050 | -0.807017 | 6.206345e-50 | -8.615850e-47 |
| Msa0108760 | Msa1341060 | 0.821370 | 4.186215e-53 | -8.615850e-47 |
| Msa0108760 | Msa1352280 | -0.802284 | 6.034715e-49 | -8.615850e-47 |
| Msa0108760 | Msa1364350 | -0.814376 | 1.589863e-51 | -8.615850e-47 |
| Msa0108760 | Msa1384760 | -0.802338 | 5.881740e-49 | -8.615850e-47 |
| Msa0108760 | Msa1392980 | 0.805579 | 1.247074e-49 | -8.615850e-47 |
| Msa0108760 | Msa1407760 | 0.829413 | 5.218814e-55 | -8.615850e-47 |
| Msa0108760 | Msa1419840 | 0.834039 | 3.774066e-56 | -8.615850e-47 |
| Msa0108760 | Msa1437730 | 0.808036 | 3.772006e-50 | -8.615850e-47 |
| Msa0108760 | Msa1442920 | 0.812308 | 4.525555e-51 | -8.615850e-47 |
| Msa0108760 | Msa1452710 | 0.801098 | 1.057003e-48 | -8.615850e-47 |
| Msa0108760 | Msa1458680 | 0.808398 | 3.159217e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108760 | MtrunA17_Chr1g0161291 | 97.688 | 173 | 4 | 0 | 1 | 173 | 178 | 350 | 2.83e-126 | 358 |
| Msa0108760 | MtrunA17_Chr8g0391751 | 80.347 | 173 | 32 | 1 | 1 | 173 | 166 | 336 | 1.98e-102 | 297 |
| Msa0108760 | MtrunA17_Chr4g0057351 | 55.056 | 178 | 75 | 2 | 1 | 173 | 194 | 371 | 1.59e-66 | 207 |
| Msa0108760 | MtrunA17_Chr7g0255261 | 53.757 | 173 | 77 | 2 | 3 | 173 | 126 | 297 | 3.36e-60 | 189 |
| Msa0108760 | MtrunA17_Chr5g0397921 | 58.659 | 179 | 68 | 3 | 1 | 173 | 209 | 387 | 2.26e-59 | 189 |
| Msa0108760 | MtrunA17_Chr7g0246571 | 54.651 | 172 | 74 | 3 | 1 | 170 | 191 | 360 | 2.70e-54 | 176 |
| Msa0108760 | MtrunA17_Chr7g0255331 | 39.891 | 183 | 91 | 5 | 3 | 173 | 123 | 298 | 7.14e-33 | 118 |
| Msa0108760 | MtrunA17_Chr7g0255321 | 39.665 | 179 | 89 | 4 | 4 | 170 | 120 | 291 | 2.11e-32 | 117 |
| Msa0108760 | MtrunA17_Chr3g0138451 | 36.994 | 173 | 94 | 6 | 1 | 166 | 197 | 361 | 2.42e-28 | 108 |
| Msa0108760 | MtrunA17_Chr1g0148631 | 39.053 | 169 | 94 | 4 | 1 | 166 | 223 | 385 | 8.24e-28 | 107 |
| Msa0108760 | MtrunA17_Chr3g0102761 | 30.814 | 172 | 98 | 5 | 1 | 168 | 179 | 333 | 2.92e-18 | 80.5 |
| Msa0108760 | MtrunA17_Chr5g0446921 | 27.381 | 168 | 110 | 1 | 1 | 168 | 185 | 340 | 5.84e-15 | 71.2 |
| Msa0108760 | MtrunA17_Chr4g0065171 | 52.830 | 53 | 23 | 2 | 119 | 169 | 480 | 532 | 1.85e-13 | 67.4 |
| Msa0108760 | MtrunA17_Chr8g0388231 | 32.000 | 125 | 77 | 3 | 47 | 163 | 255 | 379 | 4.96e-13 | 65.9 |
| Msa0108760 | MtrunA17_Chr5g0408871 | 52.000 | 50 | 23 | 1 | 118 | 166 | 501 | 550 | 6.72e-13 | 65.9 |
| Msa0108760 | MtrunA17_Chr8g0388201 | 55.769 | 52 | 22 | 1 | 113 | 163 | 338 | 389 | 7.88e-13 | 65.5 |
| Msa0108760 | MtrunA17_Chr8g0369691 | 56.863 | 51 | 20 | 2 | 118 | 166 | 440 | 490 | 1.02e-11 | 62.4 |
| Msa0108760 | MtrunA17_Chr6g0461611 | 35.616 | 73 | 47 | 0 | 94 | 166 | 208 | 280 | 3.48e-11 | 60.5 |
| Msa0108760 | MtrunA17_Chr5g0396591 | 50.769 | 65 | 29 | 2 | 102 | 163 | 218 | 282 | 4.40e-11 | 60.1 |
| Msa0108760 | MtrunA17_Chr5g0396611 | 49.231 | 65 | 30 | 2 | 102 | 163 | 318 | 382 | 4.44e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0108760 | AT1G68070.1 | 77.907 | 172 | 38 | 0 | 1 | 172 | 171 | 342 | 1.57e-100 | 293 |
| Msa0108760 | AT2G01735.1 | 71.176 | 170 | 49 | 0 | 1 | 170 | 186 | 355 | 2.30e-87 | 260 |
| Msa0108760 | AT3G61180.1 | 57.923 | 183 | 64 | 3 | 1 | 173 | 200 | 379 | 2.16e-68 | 213 |
| Msa0108760 | AT4G11680.1 | 64.118 | 170 | 57 | 2 | 1 | 169 | 219 | 385 | 1.79e-64 | 202 |
| Msa0108760 | AT1G12760.2 | 58.523 | 176 | 64 | 2 | 1 | 170 | 158 | 330 | 2.02e-58 | 186 |
| Msa0108760 | AT4G11680.2 | 54.774 | 199 | 57 | 3 | 1 | 169 | 219 | 414 | 3.70e-58 | 187 |
| Msa0108760 | AT1G12760.1 | 58.523 | 176 | 64 | 2 | 1 | 170 | 229 | 401 | 4.03e-58 | 187 |
| Msa0108760 | AT1G63170.1 | 56.497 | 177 | 68 | 2 | 1 | 170 | 199 | 373 | 4.46e-54 | 176 |
| Msa0108760 | AT2G01735.2 | 80.303 | 66 | 13 | 0 | 1 | 66 | 186 | 251 | 2.26e-31 | 114 |
| Msa0108760 | AT4G32600.1 | 35.795 | 176 | 105 | 3 | 1 | 173 | 244 | 414 | 1.82e-30 | 115 |
| Msa0108760 | AT4G32600.2 | 35.795 | 176 | 105 | 3 | 1 | 173 | 244 | 414 | 1.82e-30 | 115 |
| Msa0108760 | AT1G80400.1 | 36.628 | 172 | 92 | 6 | 1 | 166 | 239 | 399 | 6.36e-28 | 107 |
| Msa0108760 | AT5G55970.2 | 29.651 | 172 | 97 | 4 | 1 | 168 | 192 | 343 | 1.80e-15 | 73.2 |
| Msa0108760 | AT5G55970.1 | 29.651 | 172 | 97 | 4 | 1 | 168 | 192 | 343 | 1.80e-15 | 73.2 |
| Msa0108760 | AT4G26580.1 | 29.412 | 170 | 91 | 5 | 1 | 166 | 189 | 333 | 3.00e-14 | 69.7 |
| Msa0108760 | AT4G26580.2 | 29.412 | 170 | 91 | 5 | 1 | 166 | 189 | 333 | 3.00e-14 | 69.7 |
| Msa0108760 | AT5G42940.2 | 52.083 | 48 | 22 | 1 | 117 | 163 | 631 | 678 | 2.11e-12 | 64.7 |
| Msa0108760 | AT5G42940.1 | 52.083 | 48 | 22 | 1 | 117 | 163 | 631 | 678 | 2.11e-12 | 64.7 |
| Msa0108760 | AT5G10650.1 | 50.000 | 46 | 23 | 0 | 118 | 163 | 471 | 516 | 1.14e-11 | 62.4 |
| Msa0108760 | AT5G10650.2 | 50.000 | 46 | 23 | 0 | 118 | 163 | 471 | 516 | 1.14e-11 | 62.4 |
| Msa0108760 | AT1G55530.3 | 28.846 | 104 | 72 | 1 | 63 | 166 | 133 | 234 | 1.24e-11 | 62.0 |
| Msa0108760 | AT5G45290.1 | 44.231 | 52 | 28 | 1 | 118 | 168 | 486 | 537 | 2.11e-11 | 61.6 |
| Msa0108760 | AT1G55530.1 | 30.851 | 94 | 63 | 1 | 73 | 166 | 176 | 267 | 3.42e-11 | 60.8 |
| Msa0108760 | AT1G55530.2 | 30.851 | 94 | 63 | 1 | 73 | 166 | 176 | 267 | 3.42e-11 | 60.8 |
| Msa0108760 | AT1G14200.1 | 35.000 | 80 | 45 | 2 | 92 | 166 | 76 | 153 | 4.52e-11 | 58.9 |
| Msa0108760 | AT5G45290.2 | 43.396 | 53 | 28 | 1 | 118 | 168 | 486 | 538 | 6.89e-11 | 60.5 |
| Msa0108760 | AT5G07040.1 | 44.444 | 54 | 29 | 1 | 111 | 163 | 83 | 136 | 9.02e-11 | 57.8 |
Find 55 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTCGAAATCTGTATTT+TGG | 0.183808 | 1_3:+20383649 | None:intergenic |
| GTTATCCAATTATGGATTAT+TGG | 0.213917 | 1_3:-20382461 | Msa0108760:three_prime_UTR |
| ATTCTTCATGCATAATAAAA+TGG | 0.229080 | 1_3:-20382746 | Msa0108760:CDS |
| TGCCATCTTCTGTGTTGTTT+TGG | 0.232051 | 1_3:-20383866 | Msa0108760:CDS |
| ATTTGAAAGTTATCCAATTA+TGG | 0.244965 | 1_3:-20382469 | Msa0108760:three_prime_UTR |
| GATCTATTTAGAGAAGATTT+AGG | 0.264849 | 1_3:-20382558 | Msa0108760:three_prime_UTR |
| GTATGCACTGGTGGTTTCTA+TGG | 0.288910 | 1_3:+20383582 | None:intergenic |
| CGATGTGAATCAATAAATAC+TGG | 0.291284 | 1_3:-20384866 | Msa0108760:five_prime_UTR |
| GAACTCCAATAATCCATAAT+TGG | 0.294125 | 1_3:+20382456 | None:intergenic |
| GAACAGGTATAACACCTTAC+TGG | 0.359646 | 1_3:-20382669 | Msa0108760:exon |
| GCTATTCTCTATGCTGTTGC+GGG | 0.374371 | 1_3:-20383796 | Msa0108760:CDS |
| ATACTGGGGTTTCATTCCTT+TGG | 0.381940 | 1_3:-20384850 | Msa0108760:five_prime_UTR |
| CTGGGGTTTCATTCCTTTGG+TGG | 0.384225 | 1_3:-20384847 | Msa0108760:five_prime_UTR |
| GATGGTTGCAGGGAAGAGTA+TGG | 0.396930 | 1_3:+20382775 | None:intergenic |
| GGTTTCATTCCTTTGGTGGA+TGG | 0.399167 | 1_3:-20384843 | Msa0108760:exon |
| TTCATTCCTTTGGTGGATGG+TGG | 0.402298 | 1_3:-20384840 | Msa0108760:exon |
| TCTCTATGCTGTTGCGGGAC+AGG | 0.424869 | 1_3:-20383791 | Msa0108760:intron |
| TCATTCCTTTGGTGGATGGT+GGG | 0.449593 | 1_3:-20384839 | Msa0108760:exon |
| AGAATGGAAATGATGGTTGC+AGG | 0.452786 | 1_3:+20382764 | None:intergenic |
| GAGAAGGATAGTGGTGGAGC+TGG | 0.468638 | 1_3:-20383616 | Msa0108760:CDS |
| AGCTCTACTCCATCTTCATA+TGG | 0.474255 | 1_3:+20382798 | None:intergenic |
| ATTTATTGATTCACATCGCT+TGG | 0.476837 | 1_3:+20384871 | None:intergenic |
| TATTCTCAAGGGAAACGAAC+AGG | 0.479763 | 1_3:-20382685 | Msa0108760:CDS |
| TGCTATTCTCTATGCTGTTG+CGG | 0.491315 | 1_3:-20383797 | Msa0108760:CDS |
| ATTATCAAAACTGAGCAAAT+CGG | 0.492185 | 1_3:+20382590 | None:intergenic |
| AACAATGAGGAGAAGGATAG+TGG | 0.493619 | 1_3:-20383625 | Msa0108760:CDS |
| TGCCAAAACAACACAGAAGA+TGG | 0.498684 | 1_3:+20383864 | None:intergenic |
| AAGATGCTCCACGCTTGTAC+TGG | 0.503612 | 1_3:-20384778 | Msa0108760:intron |
| TTGTAAGTACAATATTCTCA+AGG | 0.522566 | 1_3:-20382697 | Msa0108760:CDS |
| GGAAATCATACCGCATCCTC+AGG | 0.524464 | 1_3:+20383535 | None:intergenic |
| ATAGAGAATAGCAATGATGC+AGG | 0.528520 | 1_3:+20383807 | None:intergenic |
| TAGTGGTGGAGCTGGATCAA+TGG | 0.540698 | 1_3:-20383608 | Msa0108760:CDS |
| TGCCTCTGTCCATATGAAGA+TGG | 0.543393 | 1_3:-20382807 | Msa0108760:CDS |
| AGTTGCCATGTATGCACTGG+TGG | 0.544429 | 1_3:+20383573 | None:intergenic |
| AGCGTTGAAAACTCCCAGTA+AGG | 0.544987 | 1_3:+20382655 | None:intergenic |
| AGAAACCACCAGTGCATACA+TGG | 0.546021 | 1_3:-20383578 | Msa0108760:CDS |
| AATATCAAACAATGAGGAGA+AGG | 0.552713 | 1_3:-20383632 | Msa0108760:CDS |
| AGAATATTGTACTTACAAAG+AGG | 0.557808 | 1_3:+20382702 | None:intergenic |
| TGTAAGTACAATATTCTCAA+GGG | 0.561290 | 1_3:-20382696 | Msa0108760:CDS |
| TTCAGTTGCCATGTATGCAC+TGG | 0.568260 | 1_3:+20383570 | None:intergenic |
| AACAGGTATAACACCTTACT+GGG | 0.571722 | 1_3:-20382668 | Msa0108760:exon |
| TGCATGAAGAATGGAAATGA+TGG | 0.580086 | 1_3:+20382757 | None:intergenic |
| TATGCACTGGTGGTTTCTAT+GGG | 0.584259 | 1_3:+20383583 | None:intergenic |
| GATGTGAATCAATAAATACT+GGG | 0.596572 | 1_3:-20384865 | Msa0108760:five_prime_UTR |
| GAATGGAAATGATGGTTGCA+GGG | 0.597135 | 1_3:+20382765 | None:intergenic |
| AGCGTGGAGCATCTTGCAGA+AGG | 0.597658 | 1_3:+20384786 | None:intergenic |
| CTTTCAAATGACTCTAGCAA+AGG | 0.618057 | 1_3:+20382483 | None:intergenic |
| AAAAGCCCACCATCCACCAA+AGG | 0.634811 | 1_3:+20384834 | None:intergenic |
| CTCCATCTTCATATGGACAG+AGG | 0.658470 | 1_3:+20382805 | None:intergenic |
| AAAGCTTACCAGTACAAGCG+TGG | 0.660127 | 1_3:+20384770 | None:intergenic |
| ATTTCGAATATCAAACAATG+AGG | 0.669915 | 1_3:-20383638 | Msa0108760:CDS |
| TAGAGAATAGCAATGATGCA+GGG | 0.670826 | 1_3:+20383808 | None:intergenic |
| AATGAGGAGAAGGATAGTGG+TGG | 0.671940 | 1_3:-20383622 | Msa0108760:CDS |
| ATGTGAATCAATAAATACTG+GGG | 0.688287 | 1_3:-20384864 | Msa0108760:five_prime_UTR |
| TAATACTCAGTATAGTAACG+TGG | 0.736927 | 1_3:+20382512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATATTTGTTGATTT+TGG | - | chr1_3:20382764-20382783 | Msa0108760:CDS | 10.0% |
| !!! | TATAAGAAGTTAAATTTTAA+AGG | - | chr1_3:20384104-20384123 | Msa0108760:intron | 10.0% |
| !! | AAATGCATAATTCAATTAAA+AGG | + | chr1_3:20382916-20382935 | None:intergenic | 15.0% |
| !!! | ATAAAAATTTTCTTGATCAA+AGG | - | chr1_3:20383078-20383097 | Msa0108760:intron | 15.0% |
| !! | ATTTATTTGAGAGATAAAAT+TGG | + | chr1_3:20383239-20383258 | None:intergenic | 15.0% |
| !!! | AATTTTATCTCTCAAATAAA+TGG | - | chr1_3:20383238-20383257 | Msa0108760:intron | 15.0% |
| !! | AAATAAATAGAACAATTAGA+AGG | + | chr1_3:20383588-20383607 | None:intergenic | 15.0% |
| !!! | AAATTTAACTTCTTATAACA+GGG | + | chr1_3:20384101-20384120 | None:intergenic | 15.0% |
| !!! | AAAATTTAACTTCTTATAAC+AGG | + | chr1_3:20384102-20384121 | None:intergenic | 15.0% |
| !!! | CATTATTTGAAACTTTTTTT+TGG | - | chr1_3:20384184-20384203 | Msa0108760:intron | 15.0% |
| !!! | TCTAAAACAAACAATTCAAA+AGG | + | chr1_3:20382820-20382839 | None:intergenic | 20.0% |
| !! | ACTTGAAATACAAGTATATA+AGG | + | chr1_3:20382951-20382970 | None:intergenic | 20.0% |
| !! | TATTTATAGATGACCAAAAT+GGG | - | chr1_3:20383283-20383302 | Msa0108760:intron | 20.0% |
| !! | GGTATGAATAAAAAATAGTT+TGG | - | chr1_3:20383538-20383557 | Msa0108760:intron | 20.0% |
| !!! | ATTTCATTTTGAGTGAATAT+AGG | - | chr1_3:20383604-20383623 | Msa0108760:CDS | 20.0% |
| !! | GTGACTAAAATATAAAATCA+GGG | + | chr1_3:20383885-20383904 | None:intergenic | 20.0% |
| !! | AGTGACTAAAATATAAAATC+AGG | + | chr1_3:20383886-20383905 | None:intergenic | 20.0% |
| !!! | CACAAATTTCTAAAATATCA+AGG | + | chr1_3:20384008-20384027 | None:intergenic | 20.0% |
| !!! | AATTTGAGTTAAACAAACAA+CGG | - | chr1_3:20384048-20384067 | Msa0108760:intron | 20.0% |
| !! | TTTCAAATAATGCAATCAAT+TGG | + | chr1_3:20384176-20384195 | None:intergenic | 20.0% |
| !! | ATGCATGTTAAAAGAAAAAA+GGG | - | chr1_3:20384265-20384284 | Msa0108760:intron | 20.0% |
| !! | AGTTTCTTCTAAATATTTCT+TGG | - | chr1_3:20384345-20384364 | Msa0108760:intron | 20.0% |
| !!! | ATTTTATTATGCATGAAGAA+TGG | + | chr1_3:20384563-20384582 | None:intergenic | 20.0% |
| !! | ATTCTTCATGCATAATAAAA+TGG | - | chr1_3:20384562-20384581 | Msa0108760:intron | 20.0% |
| !! | ATTTGAAAGTTATCCAATTA+TGG | - | chr1_3:20384839-20384858 | Msa0108760:exon | 20.0% |
| ! | GATGTGAATCAATAAATACT+GGG | - | chr1_3:20382443-20382462 | Msa0108760:three_prime_UTR | 25.0% |
| ! | ATGTGAATCAATAAATACTG+GGG | - | chr1_3:20382444-20382463 | Msa0108760:three_prime_UTR | 25.0% |
| !!! | AGAATATTTGCTATTTGTAC+CGG | - | chr1_3:20382647-20382666 | Msa0108760:three_prime_UTR | 25.0% |
| !!! | TATATTTGTTGATTTTGGAG+TGG | - | chr1_3:20382769-20382788 | Msa0108760:CDS | 25.0% |
| !!! | AATTGTTTGTTTTAGAGAGA+CGG | - | chr1_3:20382824-20382843 | Msa0108760:intron | 25.0% |
| ! | TATCCTCTCTTATAAACAAA+GGG | + | chr1_3:20382864-20382883 | None:intergenic | 25.0% |
| ! | TTCTATTCTATTGTAGTAAG+TGG | + | chr1_3:20383003-20383022 | None:intergenic | 25.0% |
| ! | ACGAATTTGAAAAATCATCT+TGG | + | chr1_3:20383026-20383045 | None:intergenic | 25.0% |
| !!! | TCGTAAATTTCAAAAGTACT+AGG | - | chr1_3:20383042-20383061 | Msa0108760:intron | 25.0% |
| !!! | CGTAAATTTCAAAAGTACTA+GGG | - | chr1_3:20383043-20383062 | Msa0108760:intron | 25.0% |
| ! | GTATTTATAGATGACCAAAA+TGG | - | chr1_3:20383282-20383301 | Msa0108760:intron | 25.0% |
| !!! | GTAGTTACTCAATTTTTTCT+AGG | - | chr1_3:20383305-20383324 | Msa0108760:intron | 25.0% |
| !!! | ACTTGTTTTTGAATCTTTAC+AGG | - | chr1_3:20383384-20383403 | Msa0108760:intron | 25.0% |
| !! | GATATTCGAAATCTGTATTT+TGG | + | chr1_3:20383662-20383681 | None:intergenic | 25.0% |
| ! | ATTTCGAATATCAAACAATG+AGG | - | chr1_3:20383670-20383689 | Msa0108760:CDS | 25.0% |
| ! | ACTGAAATAAATTGTGTTTC+AGG | + | chr1_3:20383797-20383816 | None:intergenic | 25.0% |
| ! | AATGGAAATCAATTGTTCAA+TGG | - | chr1_3:20383848-20383867 | Msa0108760:CDS | 25.0% |
| ! | TTATAACAGGGATACAAAAA+GGG | + | chr1_3:20384089-20384108 | None:intergenic | 25.0% |
| !!! | TAAATTTTAAAGGCACAAAG+AGG | - | chr1_3:20384114-20384133 | Msa0108760:intron | 25.0% |
| !! | TTCTTTTAGTACTAAAGGAT+GGG | - | chr1_3:20384222-20384241 | Msa0108760:intron | 25.0% |
| ! | GATGCATGTTAAAAGAAAAA+AGG | - | chr1_3:20384264-20384283 | Msa0108760:intron | 25.0% |
| ! | GTCTATTAAGATTATGTTGA+TGG | - | chr1_3:20384313-20384332 | Msa0108760:intron | 25.0% |
| ! | TTCTAAATATTTCTTGGAAG+AGG | - | chr1_3:20384351-20384370 | Msa0108760:intron | 25.0% |
| !!! | AAAATTGTAAGTTGGTTTCT+GGG | + | chr1_3:20384428-20384447 | None:intergenic | 25.0% |
| !! | AAACTCTGAAAATTGTAAGT+TGG | + | chr1_3:20384436-20384455 | None:intergenic | 25.0% |
| ! | AGAATATTGTACTTACAAAG+AGG | + | chr1_3:20384609-20384628 | None:intergenic | 25.0% |
| ! | TTGTAAGTACAATATTCTCA+AGG | - | chr1_3:20384611-20384630 | Msa0108760:intron | 25.0% |
| ! | TGTAAGTACAATATTCTCAA+GGG | - | chr1_3:20384612-20384631 | Msa0108760:intron | 25.0% |
| ! | ATTATCAAAACTGAGCAAAT+CGG | + | chr1_3:20384721-20384740 | None:intergenic | 25.0% |
| ! | GATCTATTTAGAGAAGATTT+AGG | - | chr1_3:20384750-20384769 | Msa0108760:intron | 25.0% |
| !! | GTTATCCAATTATGGATTAT+TGG | - | chr1_3:20384847-20384866 | Msa0108760:five_prime_UTR | 25.0% |
| !! | ATTTATTGATTCACATCGCT+TGG | + | chr1_3:20382440-20382459 | None:intergenic | 30.0% |
| CGATGTGAATCAATAAATAC+TGG | - | chr1_3:20382442-20382461 | Msa0108760:three_prime_UTR | 30.0% | |
| ! | ATATACACATGTGCATTTTC+AGG | + | chr1_3:20382684-20382703 | None:intergenic | 30.0% |
| !! | TAAACAAAGGGTATTGAAGA+AGG | + | chr1_3:20382852-20382871 | None:intergenic | 30.0% |
| ! | ATACCCTTTGTTTATAAGAG+AGG | - | chr1_3:20382858-20382877 | Msa0108760:intron | 30.0% |
| GTATCCTCTCTTATAAACAA+AGG | + | chr1_3:20382865-20382884 | None:intergenic | 30.0% | |
| TATAAATGGACGACCAAAAT+TGG | + | chr1_3:20383104-20383123 | None:intergenic | 30.0% | |
| !!! | TTCTTTTTTAAGGACTGGTT+GGG | + | chr1_3:20383184-20383203 | None:intergenic | 30.0% |
| !!! | TCTTGTTCTTTTTTAAGGAC+TGG | + | chr1_3:20383189-20383208 | None:intergenic | 30.0% |
| !!! | CTCGATCTTGTTCTTTTTTA+AGG | + | chr1_3:20383194-20383213 | None:intergenic | 30.0% |
| ! | AATTGAGTAACTACCCATTT+TGG | + | chr1_3:20383299-20383318 | None:intergenic | 30.0% |
| TTTGTTGCTGTACTAATGAA+AGG | - | chr1_3:20383357-20383376 | Msa0108760:intron | 30.0% | |
| !! | CATTTTGAGTGAATATAGGA+AGG | - | chr1_3:20383608-20383627 | Msa0108760:CDS | 30.0% |
| AATATCAAACAATGAGGAGA+AGG | - | chr1_3:20383676-20383695 | Msa0108760:CDS | 30.0% | |
| ! | AATTGATCACTTCTGAGAAA+TGG | - | chr1_3:20383830-20383849 | Msa0108760:CDS | 30.0% |
| AATTGTTCAATGGAAATCAG+TGG | - | chr1_3:20383858-20383877 | Msa0108760:CDS | 30.0% | |
| CTTATAACAGGGATACAAAA+AGG | + | chr1_3:20384090-20384109 | None:intergenic | 30.0% | |
| ACAAAGAGGTTACAACTTTA+TGG | - | chr1_3:20384128-20384147 | Msa0108760:intron | 30.0% | |
| ! | GTCACTTCTTTTAGTACTAA+AGG | - | chr1_3:20384217-20384236 | Msa0108760:intron | 30.0% |
| ! | CTTCTTTTAGTACTAAAGGA+TGG | - | chr1_3:20384221-20384240 | Msa0108760:intron | 30.0% |
| CTAGCAAATAAACTGATAGT+AGG | - | chr1_3:20384289-20384308 | Msa0108760:intron | 30.0% | |
| !!! | TATTTTTTCTAGAAGAGCTC+AGG | + | chr1_3:20384397-20384416 | None:intergenic | 30.0% |
| !! | GAAAATTGTAAGTTGGTTTC+TGG | + | chr1_3:20384429-20384448 | None:intergenic | 30.0% |
| !!! | TATTTGCTGTTTTGCATTTC+AGG | - | chr1_3:20384467-20384486 | Msa0108760:intron | 30.0% |
| !! | GCTCAGTTTTGATAATTGTT+TGG | - | chr1_3:20384725-20384744 | Msa0108760:intron | 30.0% |
| TAATACTCAGTATAGTAACG+TGG | + | chr1_3:20384799-20384818 | None:intergenic | 30.0% | |
| GAACTCCAATAATCCATAAT+TGG | + | chr1_3:20384855-20384874 | None:intergenic | 30.0% | |
| CCACTAGTTGTTAAATATGC+AGG | + | chr1_3:20382887-20382906 | None:intergenic | 35.0% | |
| CCTGCATATTTAACAACTAG+TGG | - | chr1_3:20382884-20382903 | Msa0108760:intron | 35.0% | |
| ! | TCTTGATCAAAGGCCAATTT+TGG | - | chr1_3:20383088-20383107 | Msa0108760:intron | 35.0% |
| CCAAAAGATGCGGTTATAAA+TGG | + | chr1_3:20383118-20383137 | None:intergenic | 35.0% | |
| ! | CCATTTATAACCGCATCTTT+TGG | - | chr1_3:20383115-20383134 | Msa0108760:intron | 35.0% |
| CATACAGATGCGGTTATAAA+TGG | + | chr1_3:20383145-20383164 | None:intergenic | 35.0% | |
| CATTTATAACCGCATCTGTA+TGG | - | chr1_3:20383143-20383162 | Msa0108760:intron | 35.0% | |
| !!! | GTTCTTTTTTAAGGACTGGT+TGG | + | chr1_3:20383185-20383204 | None:intergenic | 35.0% |
| ACAAGATCGAGTCCATTAAT+TGG | - | chr1_3:20383203-20383222 | Msa0108760:intron | 35.0% | |
| AGTCCATTAATTGGTACCAA+AGG | - | chr1_3:20383212-20383231 | Msa0108760:intron | 35.0% | |
| GAGAGATAAAATTGGTCCTT+TGG | + | chr1_3:20383231-20383250 | None:intergenic | 35.0% | |
| ! | GTTTTTGAATCTTTACAGGC+TGG | - | chr1_3:20383388-20383407 | Msa0108760:intron | 35.0% |
| TAGAGAATAGCAATGATGCA+GGG | + | chr1_3:20383503-20383522 | None:intergenic | 35.0% | |
| ATAGAGAATAGCAATGATGC+AGG | + | chr1_3:20383504-20383523 | None:intergenic | 35.0% | |
| ! | TGAACGAATACTTTTACCTG+AGG | - | chr1_3:20383757-20383776 | Msa0108760:intron | 35.0% |
| ! | AATACTTTTACCTGAGGATG+CGG | - | chr1_3:20383763-20383782 | Msa0108760:intron | 35.0% |
| ! | TGTTTTCATGCATGTGAATC+TGG | - | chr1_3:20383927-20383946 | Msa0108760:intron | 35.0% |
| TTGAGTTAAACAAACAACGG+CGG | - | chr1_3:20384051-20384070 | Msa0108760:intron | 35.0% | |
| ! | TTTTAGTACTAAAGGATGGG+AGG | - | chr1_3:20384225-20384244 | Msa0108760:intron | 35.0% |
| AGGAACTTTGTTGAAGATGT+AGG | - | chr1_3:20384371-20384390 | Msa0108760:intron | 35.0% | |
| TGCATGAAGAATGGAAATGA+TGG | + | chr1_3:20384554-20384573 | None:intergenic | 35.0% | |
| AACAGGTATAACACCTTACT+GGG | - | chr1_3:20384640-20384659 | Msa0108760:intron | 35.0% | |
| CTTTCAAATGACTCTAGCAA+AGG | + | chr1_3:20384828-20384847 | None:intergenic | 35.0% | |
| ATACTGGGGTTTCATTCCTT+TGG | - | chr1_3:20382458-20382477 | Msa0108760:three_prime_UTR | 40.0% | |
| AAATGGACGACCAAAAGATG+CGG | + | chr1_3:20383128-20383147 | None:intergenic | 40.0% | |
| GGTCCTTTGGTACCAATTAA+TGG | + | chr1_3:20383218-20383237 | None:intergenic | 40.0% | |
| !!! | TGCCATCTTCTGTGTTGTTT+TGG | - | chr1_3:20383442-20383461 | Msa0108760:intron | 40.0% |
| TGCCAAAACAACACAGAAGA+TGG | + | chr1_3:20383447-20383466 | None:intergenic | 40.0% | |
| !!! | GTTGTTTTGGCATGCTTGAT+CGG | - | chr1_3:20383455-20383474 | Msa0108760:intron | 40.0% |
| TGCTATTCTCTATGCTGTTG+CGG | - | chr1_3:20383511-20383530 | Msa0108760:intron | 40.0% | |
| AACAATGAGGAGAAGGATAG+TGG | - | chr1_3:20383683-20383702 | Msa0108760:CDS | 40.0% | |
| ! | TATGCACTGGTGGTTTCTAT+GGG | + | chr1_3:20383728-20383747 | None:intergenic | 40.0% |
| CATGTGAATCTGGTCATCAA+AGG | - | chr1_3:20383937-20383956 | Msa0108760:intron | 40.0% | |
| TGAGTTAAACAAACAACGGC+GGG | - | chr1_3:20384052-20384071 | Msa0108760:intron | 40.0% | |
| CAGGGATACAAAAAGGGAAA+AGG | + | chr1_3:20384083-20384102 | None:intergenic | 40.0% | |
| AGCTCTACTCCATCTTCATA+TGG | + | chr1_3:20384513-20384532 | None:intergenic | 40.0% | |
| GAATGGAAATGATGGTTGCA+GGG | + | chr1_3:20384546-20384565 | None:intergenic | 40.0% | |
| AGAATGGAAATGATGGTTGC+AGG | + | chr1_3:20384547-20384566 | None:intergenic | 40.0% | |
| TATTCTCAAGGGAAACGAAC+AGG | - | chr1_3:20384623-20384642 | Msa0108760:intron | 40.0% | |
| GAACAGGTATAACACCTTAC+TGG | - | chr1_3:20384639-20384658 | Msa0108760:intron | 40.0% | |
| GGTTTCATTCCTTTGGTGGA+TGG | - | chr1_3:20382465-20382484 | Msa0108760:three_prime_UTR | 45.0% | |
| ! | TTCATTCCTTTGGTGGATGG+TGG | - | chr1_3:20382468-20382487 | Msa0108760:three_prime_UTR | 45.0% |
| ! | TCATTCCTTTGGTGGATGGT+GGG | - | chr1_3:20382469-20382488 | Msa0108760:three_prime_UTR | 45.0% |
| AAAGCTTACCAGTACAAGCG+TGG | + | chr1_3:20382541-20382560 | None:intergenic | 45.0% | |
| GCGCTTGAGTCTACATAAGT+AGG | + | chr1_3:20382621-20382640 | None:intergenic | 45.0% | |
| ! | GAGAGCATATGTGACACTGA+GGG | - | chr1_3:20383260-20383279 | Msa0108760:intron | 45.0% |
| !! | CAGGCTGGCTGTTATCTTTT+TGG | - | chr1_3:20383403-20383422 | Msa0108760:intron | 45.0% |
| GCTATTCTCTATGCTGTTGC+GGG | - | chr1_3:20383512-20383531 | Msa0108760:intron | 45.0% | |
| ! | AATGAGGAGAAGGATAGTGG+TGG | - | chr1_3:20383686-20383705 | Msa0108760:intron | 45.0% |
| ! | GTATGCACTGGTGGTTTCTA+TGG | + | chr1_3:20383729-20383748 | None:intergenic | 45.0% |
| AGAAACCACCAGTGCATACA+TGG | - | chr1_3:20383730-20383749 | Msa0108760:intron | 45.0% | |
| TTCAGTTGCCATGTATGCAC+TGG | + | chr1_3:20383741-20383760 | None:intergenic | 45.0% | |
| TGCCTCTGTCCATATGAAGA+TGG | - | chr1_3:20384501-20384520 | Msa0108760:intron | 45.0% | |
| CTCCATCTTCATATGGACAG+AGG | + | chr1_3:20384506-20384525 | None:intergenic | 45.0% | |
| ! | AGCGTTGAAAACTCCCAGTA+AGG | + | chr1_3:20384656-20384675 | None:intergenic | 45.0% |
| CTGGGGTTTCATTCCTTTGG+TGG | - | chr1_3:20382461-20382480 | Msa0108760:three_prime_UTR | 50.0% | |
| AAAAGCCCACCATCCACCAA+AGG | + | chr1_3:20382477-20382496 | None:intergenic | 50.0% | |
| !!! | GTGGATGGTGGGCTTTTACT+GGG | - | chr1_3:20382480-20382499 | Msa0108760:three_prime_UTR | 50.0% |
| ! | GGCTTTTACTGGGTTGTCTC+TGG | - | chr1_3:20382490-20382509 | Msa0108760:three_prime_UTR | 50.0% |
| AAGATGCTCCACGCTTGTAC+TGG | - | chr1_3:20382530-20382549 | Msa0108760:three_prime_UTR | 50.0% | |
| ! | GCTATTTGTACCGGTGCTGA+AGG | - | chr1_3:20382656-20382675 | Msa0108760:three_prime_UTR | 50.0% |
| !! | TTTTCAGGCACCTTCAGCAC+CGG | + | chr1_3:20382669-20382688 | None:intergenic | 50.0% |
| AACCGCATCTGTATGGTCCT+TGG | - | chr1_3:20383150-20383169 | Msa0108760:intron | 50.0% | |
| CTCCAAGGACCATACAGATG+CGG | + | chr1_3:20383155-20383174 | None:intergenic | 50.0% | |
| ! | GGAGAGCATATGTGACACTG+AGG | - | chr1_3:20383259-20383278 | Msa0108760:intron | 50.0% |
| ! | TAGTGGTGGAGCTGGATCAA+TGG | - | chr1_3:20383700-20383719 | Msa0108760:intron | 50.0% |
| AGTTGCCATGTATGCACTGG+TGG | + | chr1_3:20383738-20383757 | None:intergenic | 50.0% | |
| GGAAATCATACCGCATCCTC+AGG | + | chr1_3:20383776-20383795 | None:intergenic | 50.0% | |
| GATGGTTGCAGGGAAGAGTA+TGG | + | chr1_3:20384536-20384555 | None:intergenic | 50.0% | |
| !!! | GGTGGATGGTGGGCTTTTAC+TGG | - | chr1_3:20382479-20382498 | Msa0108760:three_prime_UTR | 55.0% |
| ! | AGCGTGGAGCATCTTGCAGA+AGG | + | chr1_3:20382525-20382544 | None:intergenic | 55.0% |
| ! | CTGGTTGGGTTGTCACTCCA+AGG | + | chr1_3:20383170-20383189 | None:intergenic | 55.0% |
| TCTCTATGCTGTTGCGGGAC+AGG | - | chr1_3:20383517-20383536 | Msa0108760:intron | 55.0% | |
| ! | GAGAAGGATAGTGGTGGAGC+TGG | - | chr1_3:20383692-20383711 | Msa0108760:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 20382437 | 20384893 | 20382437 | ID=Msa0108760;Name=Msa0108760 |
| chr1_3 | mRNA | 20382437 | 20384893 | 20382437 | ID=Msa0108760-mRNA-1;Parent=Msa0108760;Name=Msa0108760-mRNA-1;_AED=0.13;_eAED=0.13;_QI=47|1|1|1|1|1|4|243|173 |
| chr1_3 | exon | 20382437 | 20382841 | 20382437 | ID=Msa0108760-mRNA-1:exon:7401;Parent=Msa0108760-mRNA-1 |
| chr1_3 | exon | 20383546 | 20383704 | 20383546 | ID=Msa0108760-mRNA-1:exon:7400;Parent=Msa0108760-mRNA-1 |
| chr1_3 | exon | 20383792 | 20383924 | 20383792 | ID=Msa0108760-mRNA-1:exon:7399;Parent=Msa0108760-mRNA-1 |
| chr1_3 | exon | 20384779 | 20384893 | 20384779 | ID=Msa0108760-mRNA-1:exon:7398;Parent=Msa0108760-mRNA-1 |
| chr1_3 | five_prime_UTR | 20384847 | 20384893 | 20384847 | ID=Msa0108760-mRNA-1:five_prime_utr;Parent=Msa0108760-mRNA-1 |
| chr1_3 | CDS | 20384779 | 20384846 | 20384779 | ID=Msa0108760-mRNA-1:cds;Parent=Msa0108760-mRNA-1 |
| chr1_3 | CDS | 20383792 | 20383924 | 20383792 | ID=Msa0108760-mRNA-1:cds;Parent=Msa0108760-mRNA-1 |
| chr1_3 | CDS | 20383546 | 20383704 | 20383546 | ID=Msa0108760-mRNA-1:cds;Parent=Msa0108760-mRNA-1 |
| chr1_3 | CDS | 20382680 | 20382841 | 20382680 | ID=Msa0108760-mRNA-1:cds;Parent=Msa0108760-mRNA-1 |
| chr1_3 | three_prime_UTR | 20382437 | 20382679 | 20382437 | ID=Msa0108760-mRNA-1:three_prime_utr;Parent=Msa0108760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
