AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0260680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260680 MtrunA17_Chr2g0293841 98.936 94 1 0 1 94 931 1024 1.57e-62 204
Msa0260680 MtrunA17_Chr7g0265431 52.475 101 40 2 1 94 1049 1148 2.78e-28 106
Msa0260680 MtrunA17_Chr4g0052551 47.253 91 47 1 2 91 3644 3734 4.34e-20 83.2
Msa0260680 MtrunA17_Chr4g0052561 45.055 91 49 1 2 91 3665 3755 3.95e-19 80.5
Msa0260680 MtrunA17_Chr3g0132611 43.956 91 50 1 2 91 3568 3658 6.49e-19 79.7
Msa0260680 MtrunA17_Chr5g0427791 42.857 91 51 1 2 91 3562 3652 1.22e-17 76.3
Msa0260680 MtrunA17_Chr4g0037101 40.777 103 49 2 4 94 1779 1881 1.60e-16 73.2
Msa0260680 MtrunA17_Chr7g0263651 42.857 91 48 2 1 90 93 180 2.58e-16 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0260680 AT3G17205.2 75.532 94 23 0 1 94 922 1015 9.51e-48 162
Msa0260680 AT3G17205.1 75.532 94 23 0 1 94 936 1029 1.12e-47 162
Msa0260680 AT3G17205.3 75.532 94 23 0 1 94 936 1029 1.12e-47 162
Msa0260680 AT3G53090.1 52.000 100 42 1 1 94 1043 1142 4.02e-29 109
Msa0260680 AT3G53090.2 52.000 100 42 1 1 94 1043 1142 4.02e-29 109
Msa0260680 AT1G55860.1 45.745 94 50 1 2 94 3588 3681 1.03e-20 85.5
Msa0260680 AT1G70320.1 44.681 94 51 1 2 94 3565 3658 2.52e-20 84.3
Msa0260680 AT5G02880.1 44.565 92 48 2 4 94 1413 1502 5.31e-17 74.7
Msa0260680 AT4G38600.3 39.423 104 52 2 2 94 1785 1888 1.28e-14 68.2
Msa0260680 AT4G38600.1 39.423 104 52 2 2 94 1785 1888 1.28e-14 68.2
Msa0260680 AT4G38600.2 39.604 101 50 2 5 94 1694 1794 3.70e-14 66.6

Find 44 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCCAGCATCAGAATTTA+TGG 0.203753 2_2:-58418858 None:intergenic
ATTTATGGCATACAGTAATT+TGG 0.204741 2_2:-58418843 None:intergenic
TATGGAAAACTTACTTTATA+TGG 0.208760 2_2:-58418915 None:intergenic
GGCTTTGATTTGAGCTAAAA+AGG 0.228218 2_2:+58418875 Msa0260680:exon
TTCCCTCAGCTTCTGATATC+AGG 0.269864 2_2:+58416496 Msa0260680:five_prime_UTR
TGCTCTCGAGGACCATTACT+TGG 0.380445 2_2:+58417612 Msa0260680:CDS
AAATTGTTGGAAGTAGATAT+TGG 0.386773 2_2:+58419222 Msa0260680:three_prime_UTR
CTTGGATGTTGATGATTTGC+GGG 0.387124 2_2:+58416531 Msa0260680:five_prime_UTR
TAAAACTTCCACCGTATAGA+AGG 0.393265 2_2:+58417982 Msa0260680:CDS
CAGAAAGCTTACACTATGAT+AGG 0.399654 2_2:-58416575 None:intergenic
ATGATGTGATTGAGATGTTC+TGG 0.412106 2_2:+58417450 Msa0260680:exon
GTATACGAAACTAAAATTGT+TGG 0.424339 2_2:+58419209 Msa0260680:three_prime_UTR
ATCAGGATCACTTGACAGCT+TGG 0.430417 2_2:+58416513 Msa0260680:five_prime_UTR
AGAACAAAGGCTCAAGATAT+CGG 0.431066 2_2:-58417638 None:intergenic
ACTAGAACAAACCTTCTATA+CGG 0.452817 2_2:-58417993 None:intergenic
TATTTGCAGTAAGGATCAAA+TGG 0.484448 2_2:+58418817 Msa0260680:intron
TTTGTTTATTTAACTGCCAA+CGG 0.487196 2_2:+58416376 None:intergenic
GCTTACACTATGATAGGTTC+CGG 0.488295 2_2:-58416569 None:intergenic
CGAGTCATCTTCTACCGGTA+TGG 0.498687 2_2:-58418933 None:intergenic
CAGCATGTTTGATCATGGAT+TGG 0.502185 2_2:+58416438 Msa0260680:five_prime_UTR
CATCTTTACAGGTTTGTGAC+AGG 0.510953 2_2:+58417588 Msa0260680:intron
TTGTTTATTTAACTGCCAAC+GGG 0.513196 2_2:+58416377 None:intergenic
GCTTGGATGTTGATGATTTG+CGG 0.515419 2_2:+58416530 Msa0260680:five_prime_UTR
AAAATAAGGTCAAGCAAGCT+GGG 0.526292 2_2:-58416473 None:intergenic
TTCATACAGGTAGCTGCTGT+TGG 0.535803 2_2:-58417954 None:intergenic
CTCAGTTCTCATCATACCAT+CGG 0.540158 2_2:-58419005 None:intergenic
CGGGAGCATACAAATTATGC+CGG 0.541882 2_2:+58416550 Msa0260680:five_prime_UTR
TTTGTGACAGGTTGCTCTCG+AGG 0.558664 2_2:+58417600 Msa0260680:CDS
TATGCCATAAATTCTGATGC+TGG 0.558843 2_2:+58418854 Msa0260680:CDS
GATGTTCTGGGAAGTACTCA+AGG 0.562883 2_2:+58417463 Msa0260680:exon
AATAATATTATCAGATCCGA+TGG 0.569435 2_2:+58418989 Msa0260680:three_prime_UTR
TAATCTGTCGAGAGCATCCT+CGG 0.578790 2_2:-58417931 None:intergenic
TGATGTGATTGAGATGTTCT+GGG 0.581943 2_2:+58417451 Msa0260680:exon
AGCCTTTGTTCTGCATACAA+AGG 0.588497 2_2:+58417649 Msa0260680:CDS
AGATATCGGAATCCAAGTAA+TGG 0.591674 2_2:-58417624 None:intergenic
GATCCTGATATCAGAAGCTG+AGG 0.600475 2_2:-58416499 None:intergenic
AAAAGCGAGTCATCTTCTAC+CGG 0.606911 2_2:-58418938 None:intergenic
CACCTTTGTATGCAGAACAA+AGG 0.608363 2_2:-58417651 None:intergenic
TGTGCTTCTTGTAGGGCTGG+AGG 0.623790 2_2:+58417900 Msa0260680:intron
ATGTTCTGGGAAGTACTCAA+GGG 0.641318 2_2:+58417464 Msa0260680:CDS
GGCTGGAGGTAATGCTACCG+AGG 0.660652 2_2:+58417914 Msa0260680:CDS
AGAACAAACCTTCTATACGG+TGG 0.671400 2_2:-58417990 None:intergenic
TAGATGAAGATTGATCCCGT+TGG 0.673278 2_2:-58416392 None:intergenic
ATCCTGATATCAGAAGCTGA+GGG 0.730015 2_2:-58416498 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTTATTTATTTAGTATT+AGG + chr2_2:58416965-58416984 Msa0260680:intron 10.0%
!! GTAAAACAAAAAAAATAAAA+TGG + chr2_2:58417259-58417278 Msa0260680:intron 10.0%
!!! TTTATTGGTAAATATATTTT+CGG - chr2_2:58417792-58417811 None:intergenic 10.0%
!! ATATACTTAGTTATTAATGA+AGG + chr2_2:58416795-58416814 Msa0260680:intron 15.0%
!! AGTTAATAGAAAGTTATTAT+TGG + chr2_2:58417736-58417755 Msa0260680:intron 15.0%
!!! TCAAAATCAGAATTTTTTAT+TGG - chr2_2:58417807-58417826 None:intergenic 15.0%
!!! ATTTTGTAAAATTCACTTTT+TGG + chr2_2:58419119-58419138 Msa0260680:three_prime_UTR 15.0%
!! AGTTAATGACATGAAAAATT+AGG - chr2_2:58417350-58417369 None:intergenic 20.0%
!! AATAAATTTACCATCTTTAC+AGG + chr2_2:58417577-58417596 Msa0260680:intron 20.0%
!! GAATGATAATAGTTAACTAT+AGG + chr2_2:58418305-58418324 Msa0260680:intron 20.0%
!! TATATGACATAGAGATTAAA+TGG - chr2_2:58418597-58418616 None:intergenic 20.0%
!! AATAGTTCAAAATCAAACTA+CGG - chr2_2:58418688-58418707 None:intergenic 20.0%
!! TAGTTAACAAAATTTCACAA+AGG - chr2_2:58418766-58418785 None:intergenic 20.0%
!! TATGGAAAACTTACTTTATA+TGG - chr2_2:58418918-58418937 None:intergenic 20.0%
! ATGAAAAACTATTCCAAATG+TGG + chr2_2:58416657-58416676 Msa0260680:intron 25.0%
!! TGGTTTTTGATATATCACTA+TGG + chr2_2:58416848-58416867 Msa0260680:intron 25.0%
!! AACACTAACCCTTATTTAAA+GGG - chr2_2:58417001-58417020 None:intergenic 25.0%
!! AAACACTAACCCTTATTTAA+AGG - chr2_2:58417002-58417021 None:intergenic 25.0%
!! CTTTTCAATTTCTTTGACAT+TGG + chr2_2:58417114-58417133 Msa0260680:intron 25.0%
!! AGTTTTGCTAAAAAGATAGA+GGG - chr2_2:58417171-58417190 None:intergenic 25.0%
!! AAGTTTTGCTAAAAAGATAG+AGG - chr2_2:58417172-58417191 None:intergenic 25.0%
! AAGTAAGCTAACATAGTTAT+AGG + chr2_2:58417518-58417537 Msa0260680:intron 25.0%
!!! AAGTTTTAACAGATTCATAC+AGG - chr2_2:58417970-58417989 None:intergenic 25.0%
!! AAAAACTGTTTTGTAAGTAG+TGG + chr2_2:58418168-58418187 Msa0260680:intron 25.0%
!! AAAACTGTTTTGTAAGTAGT+GGG + chr2_2:58418169-58418188 Msa0260680:intron 25.0%
! TGATTCATAATGTATGCTTA+AGG + chr2_2:58418363-58418382 Msa0260680:intron 25.0%
!!! TTTTGCTGAAGTATTTGAAT+AGG + chr2_2:58418547-58418566 Msa0260680:intron 25.0%
! TCATATATATATGCATATCC+TGG + chr2_2:58418610-58418629 Msa0260680:intron 25.0%
!! ATTTGATATCTAGTCCTTTT+TGG + chr2_2:58418708-58418727 Msa0260680:intron 25.0%
! ATTTATGGCATACAGTAATT+TGG - chr2_2:58418846-58418865 None:intergenic 25.0%
!! ATAAAGTAAGTTTTCCATAC+CGG + chr2_2:58418919-58418938 Msa0260680:three_prime_UTR 25.0%
! AATAATATTATCAGATCCGA+TGG + chr2_2:58418989-58419008 Msa0260680:three_prime_UTR 25.0%
! GTATACGAAACTAAAATTGT+TGG + chr2_2:58419209-58419228 Msa0260680:three_prime_UTR 25.0%
! AAATTGTTGGAAGTAGATAT+TGG + chr2_2:58419222-58419241 Msa0260680:three_prime_UTR 25.0%
AAAAACAGCATGTTTGATCA+TGG + chr2_2:58416433-58416452 Msa0260680:five_prime_UTR 30.0%
! CATTTAATTGTTTCTTGCCA+AGG - chr2_2:58416628-58416647 None:intergenic 30.0%
TGATGATCATTCCAGTTATT+TGG + chr2_2:58416738-58416757 Msa0260680:intron 30.0%
TCTCGTATCCCTTTAAATAA+GGG + chr2_2:58416990-58417009 Msa0260680:intron 30.0%
AAATTGAAAAGAGTTGCAGA+TGG - chr2_2:58417105-58417124 None:intergenic 30.0%
! GTTTTGCTAAAAAGATAGAG+GGG - chr2_2:58417170-58417189 None:intergenic 30.0%
! TGTTTGTTGATCTTGTTACA+TGG + chr2_2:58417282-58417301 Msa0260680:intron 30.0%
! GTTTGTTGATCTTGTTACAT+GGG + chr2_2:58417283-58417302 Msa0260680:intron 30.0%
ATGTCATTAACTCACAAGAA+GGG + chr2_2:58417358-58417377 Msa0260680:intron 30.0%
TGAATGCTTTAACAATATCG+AGG + chr2_2:58417672-58417691 Msa0260680:intron 30.0%
GAATGCTTTAACAATATCGA+GGG + chr2_2:58417673-58417692 Msa0260680:intron 30.0%
AATCAATTGTTTCAAGACAC+TGG + chr2_2:58417703-58417722 Msa0260680:intron 30.0%
AGTATTAGGCAACTATTAAC+CGG - chr2_2:58417844-58417863 None:intergenic 30.0%
CACAGTAAACTACTAGTATT+AGG - chr2_2:58417858-58417877 None:intergenic 30.0%
ACTAGAACAAACCTTCTATA+CGG - chr2_2:58417996-58418015 None:intergenic 30.0%
GTATAAATTCCATGTTCGAA+CGG - chr2_2:58418041-58418060 None:intergenic 30.0%
TACTGTTATAGATCTCAAGA+GGG + chr2_2:58418068-58418087 Msa0260680:intron 30.0%
TATTAGATATGCATATGCAC+AGG + chr2_2:58418283-58418302 Msa0260680:intron 30.0%
TTTACCAGTAATACGTGATA+TGG - chr2_2:58418476-58418495 None:intergenic 30.0%
TATTACTGGTAAAGAGTAGA+TGG + chr2_2:58418483-58418502 Msa0260680:intron 30.0%
ATTGTAAAACAGACTGTTCT+TGG + chr2_2:58418570-58418589 Msa0260680:intron 30.0%
TTGTAAAACAGACTGTTCTT+GGG + chr2_2:58418571-58418590 Msa0260680:intron 30.0%
AAATCCAAACAAAAGAATCG+AGG - chr2_2:58418639-58418658 None:intergenic 30.0%
! TGAGTTTGTTTGTATTGTCA+GGG - chr2_2:58418793-58418812 None:intergenic 30.0%
! ATGAGTTTGTTTGTATTGTC+AGG - chr2_2:58418794-58418813 None:intergenic 30.0%
ACTCATGTTTATTTGCAGTA+AGG + chr2_2:58418808-58418827 Msa0260680:intron 30.0%
TATTTGCAGTAAGGATCAAA+TGG + chr2_2:58418817-58418836 Msa0260680:intron 30.0%
!!! TGTAAAATTCACTTTTTGGC+AGG + chr2_2:58419123-58419142 Msa0260680:three_prime_UTR 30.0%
AAAATAAGGTCAAGCAAGCT+GGG - chr2_2:58416476-58416495 None:intergenic 35.0%
AAAAATAAGGTCAAGCAAGC+TGG - chr2_2:58416477-58416496 None:intergenic 35.0%
AGAAGCTGAGGGAAAAAATA+AGG - chr2_2:58416490-58416509 None:intergenic 35.0%
CAGAAAGCTTACACTATGAT+AGG - chr2_2:58416578-58416597 None:intergenic 35.0%
CTATCATAGTGTAAGCTTTC+TGG + chr2_2:58416576-58416595 Msa0260680:intron 35.0%
!!! TTCCAAATGTGGTTTTGAGA+AGG + chr2_2:58416668-58416687 Msa0260680:intron 35.0%
ATCATTCCAGTTATTTGGCT+AGG + chr2_2:58416743-58416762 Msa0260680:intron 35.0%
GGATCTAGAGATAAATGAGT+TGG + chr2_2:58416816-58416835 Msa0260680:intron 35.0%
! AAATGAGTTGGAGAAAGACA+TGG + chr2_2:58416828-58416847 Msa0260680:intron 35.0%
GTCTCGTATCCCTTTAAATA+AGG + chr2_2:58416989-58417008 Msa0260680:intron 35.0%
CAAATGTGTTCAACACATGT+TGG + chr2_2:58417038-58417057 Msa0260680:intron 35.0%
! TATAGCTGCTTCTTGTTTCA+AGG + chr2_2:58417073-58417092 Msa0260680:intron 35.0%
! ATAGCTGCTTCTTGTTTCAA+GGG + chr2_2:58417074-58417093 Msa0260680:intron 35.0%
GACATGAAAAATTAGGACTC+TGG - chr2_2:58417343-58417362 None:intergenic 35.0%
CATGTCATTAACTCACAAGA+AGG + chr2_2:58417357-58417376 Msa0260680:intron 35.0%
GACTCTTGAATTTGTCTGAT+AGG + chr2_2:58417424-58417443 Msa0260680:intron 35.0%
ATGATGTGATTGAGATGTTC+TGG + chr2_2:58417450-58417469 Msa0260680:exon 35.0%
TGATGTGATTGAGATGTTCT+GGG + chr2_2:58417451-58417470 Msa0260680:exon 35.0%
!! AGTACTCAAGGGTTTTTCAA+TGG + chr2_2:58417475-58417494 Msa0260680:CDS 35.0%
!! AGGGTTTTTCAATGGAAAAC+AGG + chr2_2:58417483-58417502 Msa0260680:CDS 35.0%
AGATATCGGAATCCAAGTAA+TGG - chr2_2:58417627-58417646 None:intergenic 35.0%
AGAACAAAGGCTCAAGATAT+CGG - chr2_2:58417641-58417660 None:intergenic 35.0%
TTTGAATCCTTAACAAGCAC+CGG + chr2_2:58417822-58417841 Msa0260680:intron 35.0%
TAAAACTTCCACCGTATAGA+AGG + chr2_2:58417982-58418001 Msa0260680:CDS 35.0%
CTACTGTTATAGATCTCAAG+AGG + chr2_2:58418067-58418086 Msa0260680:intron 35.0%
ACTGTTATAGATCTCAAGAG+GGG + chr2_2:58418069-58418088 Msa0260680:intron 35.0%
! TTGTAAGTAGTGGGATTTAG+TGG + chr2_2:58418178-58418197 Msa0260680:intron 35.0%
TTGTCCATATCACGTATTAC+TGG + chr2_2:58418469-58418488 Msa0260680:intron 35.0%
TCAAGTGAAAATAGTACTGC+TGG - chr2_2:58418526-58418545 None:intergenic 35.0%
! GTTACCTCGATTCTTTTGTT+TGG + chr2_2:58418632-58418651 Msa0260680:intron 35.0%
! AATCAAAGTGTCAGCCAAAA+AGG - chr2_2:58418725-58418744 None:intergenic 35.0%
TATGCCATAAATTCTGATGC+TGG + chr2_2:58418854-58418873 Msa0260680:CDS 35.0%
AAAGCCAGCATCAGAATTTA+TGG - chr2_2:58418861-58418880 None:intergenic 35.0%
!! GGCTTTGATTTGAGCTAAAA+AGG + chr2_2:58418875-58418894 Msa0260680:exon 35.0%
TAGATGAAGATTGATCCCGT+TGG - chr2_2:58416395-58416414 None:intergenic 40.0%
CAGCATGTTTGATCATGGAT+TGG + chr2_2:58416438-58416457 Msa0260680:five_prime_UTR 40.0%
ATCCTGATATCAGAAGCTGA+GGG - chr2_2:58416501-58416520 None:intergenic 40.0%
!! GCTTGGATGTTGATGATTTG+CGG + chr2_2:58416530-58416549 Msa0260680:five_prime_UTR 40.0%
!! CTTGGATGTTGATGATTTGC+GGG + chr2_2:58416531-58416550 Msa0260680:five_prime_UTR 40.0%
GCTTACACTATGATAGGTTC+CGG - chr2_2:58416572-58416591 None:intergenic 40.0%
! TAAGCTTTCTGGCAGTTATG+TGG + chr2_2:58416587-58416606 Msa0260680:intron 40.0%
GGATTTAGTCAATCATGCCT+TGG + chr2_2:58416608-58416627 Msa0260680:intron 40.0%
GTCCTTCTCAAAACCACATT+TGG - chr2_2:58416673-58416692 None:intergenic 40.0%
AGATAGCCTAGCCAAATAAC+TGG - chr2_2:58416752-58416771 None:intergenic 40.0%
!! ATGTTCTGGGAAGTACTCAA+GGG + chr2_2:58417464-58417483 Msa0260680:CDS 40.0%
CTGTCACAAACCTGTAAAGA+TGG - chr2_2:58417590-58417609 None:intergenic 40.0%
CATCTTTACAGGTTTGTGAC+AGG + chr2_2:58417588-58417607 Msa0260680:intron 40.0%
AGCCTTTGTTCTGCATACAA+AGG + chr2_2:58417649-58417668 Msa0260680:CDS 40.0%
CACCTTTGTATGCAGAACAA+AGG - chr2_2:58417654-58417673 None:intergenic 40.0%
! CTATTAACCGGTGCTTGTTA+AGG - chr2_2:58417832-58417851 None:intergenic 40.0%
TAATGCCTGTGCTTCTTGTA+GGG + chr2_2:58417893-58417912 Msa0260680:intron 40.0%
AGAACAAACCTTCTATACGG+TGG - chr2_2:58417993-58418012 None:intergenic 40.0%
GTAAAGAGTAGATGGATCTC+TGG + chr2_2:58418491-58418510 Msa0260680:intron 40.0%
ACAAAAGAATCGAGGTAACC+AGG - chr2_2:58418631-58418650 None:intergenic 40.0%
AAAAGCGAGTCATCTTCTAC+CGG - chr2_2:58418941-58418960 None:intergenic 40.0%
CTCAGTTCTCATCATACCAT+CGG - chr2_2:58419008-58419027 None:intergenic 40.0%
TTCCCTCAGCTTCTGATATC+AGG + chr2_2:58416496-58416515 Msa0260680:five_prime_UTR 45.0%
GATCCTGATATCAGAAGCTG+AGG - chr2_2:58416502-58416521 None:intergenic 45.0%
ATCAGGATCACTTGACAGCT+TGG + chr2_2:58416513-58416532 Msa0260680:five_prime_UTR 45.0%
! CGGGAGCATACAAATTATGC+CGG + chr2_2:58416550-58416569 Msa0260680:five_prime_UTR 45.0%
! AAGCCTTATGCCACTAACTG+GGG - chr2_2:58416897-58416916 None:intergenic 45.0%
! CAAGCCTTATGCCACTAACT+GGG - chr2_2:58416898-58416917 None:intergenic 45.0%
ATAGAGGGGACGTGAAACTA+GGG - chr2_2:58417156-58417175 None:intergenic 45.0%
!! GATGTTCTGGGAAGTACTCA+AGG + chr2_2:58417463-58417482 Msa0260680:exon 45.0%
! CAAGAAGCACAGGCATTAGA+GGG - chr2_2:58417891-58417910 None:intergenic 45.0%
! ACAAGAAGCACAGGCATTAG+AGG - chr2_2:58417892-58417911 None:intergenic 45.0%
CTAATGCCTGTGCTTCTTGT+AGG + chr2_2:58417892-58417911 Msa0260680:intron 45.0%
!! TAATCTGTCGAGAGCATCCT+CGG - chr2_2:58417934-58417953 None:intergenic 45.0%
TTCATACAGGTAGCTGCTGT+TGG - chr2_2:58417957-58417976 None:intergenic 45.0%
! TGTAGTTTGCCGTTCGAACA+TGG + chr2_2:58418029-58418048 Msa0260680:intron 45.0%
! GTAGTGGGATTTAGTGGCAA+AGG + chr2_2:58418184-58418203 Msa0260680:intron 45.0%
!!! TGCCGTTTTGTGTTGCTTGT+AGG + chr2_2:58418223-58418242 Msa0260680:intron 45.0%
!!! GCCGTTTTGTGTTGCTTGTA+GGG + chr2_2:58418224-58418243 Msa0260680:intron 45.0%
CCCCTACAAGCAACACAAAA+CGG - chr2_2:58418228-58418247 None:intergenic 45.0%
!!! CCGTTTTGTGTTGCTTGTAG+GGG + chr2_2:58418225-58418244 Msa0260680:intron 45.0%
!!! CGTTTTGTGTTGCTTGTAGG+GGG + chr2_2:58418226-58418245 Msa0260680:intron 45.0%
CTTATGCCACTAACTGGGGT+CGG - chr2_2:58416893-58416912 None:intergenic 50.0%
! CCAAGCCTTATGCCACTAAC+TGG - chr2_2:58416899-58416918 None:intergenic 50.0%
CCAGTTAGTGGCATAAGGCT+TGG + chr2_2:58416896-58416915 Msa0260680:intron 50.0%
TAGAGGGGACGTGAAACTAG+GGG - chr2_2:58417155-58417174 None:intergenic 50.0%
GATAGAGGGGACGTGAAACT+AGG - chr2_2:58417157-58417176 None:intergenic 50.0%
TTTGTGACAGGTTGCTCTCG+AGG + chr2_2:58417600-58417619 Msa0260680:CDS 50.0%
TGCTCTCGAGGACCATTACT+TGG + chr2_2:58417612-58417631 Msa0260680:CDS 50.0%
CGAGTCATCTTCTACCGGTA+TGG - chr2_2:58418936-58418955 None:intergenic 50.0%
TTGTAGCCGACCCCAGTTAG+TGG + chr2_2:58416884-58416903 Msa0260680:intron 55.0%
CGACCCCAGTTAGTGGCATA+AGG + chr2_2:58416891-58416910 Msa0260680:intron 55.0%
AGAGGGGACGTGAAACTAGG+GGG - chr2_2:58417154-58417173 None:intergenic 55.0%
! TCCAGCCCTACAAGAAGCAC+AGG - chr2_2:58417901-58417920 None:intergenic 55.0%
TGTGCTTCTTGTAGGGCTGG+AGG + chr2_2:58417900-58417919 Msa0260680:intron 55.0%
GCCTGTGCTTCTTGTAGGGC+TGG + chr2_2:58417897-58417916 Msa0260680:intron 60.0%
GGCTGGAGGTAATGCTACCG+AGG + chr2_2:58417914-58417933 Msa0260680:CDS 60.0%
GGGGACGTGAAACTAGGGGG+AGG - chr2_2:58417151-58417170 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 58416380 58419307 58416380 ID=Msa0260680;Name=Msa0260680
chr2_2 mRNA 58416380 58419307 58416380 ID=Msa0260680-mRNA-1;Parent=Msa0260680;Name=Msa0260680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=224|1|1|1|0.75|0.8|5|415|94
chr2_2 exon 58416380 58416585 58416380 ID=Msa0260680-mRNA-1:exon:17926;Parent=Msa0260680-mRNA-1
chr2_2 exon 58417446 58417519 58417446 ID=Msa0260680-mRNA-1:exon:17927;Parent=Msa0260680-mRNA-1
chr2_2 exon 58417599 58417670 58417599 ID=Msa0260680-mRNA-1:exon:17928;Parent=Msa0260680-mRNA-1
chr2_2 exon 58417914 58418003 58417914 ID=Msa0260680-mRNA-1:exon:17929;Parent=Msa0260680-mRNA-1
chr2_2 exon 58418826 58419307 58418826 ID=Msa0260680-mRNA-1:exon:17930;Parent=Msa0260680-mRNA-1
chr2_2 five_prime_UTR 58416380 58416585 58416380 ID=Msa0260680-mRNA-1:five_prime_utr;Parent=Msa0260680-mRNA-1
chr2_2 five_prime_UTR 58417446 58417463 58417446 ID=Msa0260680-mRNA-1:five_prime_utr;Parent=Msa0260680-mRNA-1
chr2_2 CDS 58417464 58417519 58417464 ID=Msa0260680-mRNA-1:cds;Parent=Msa0260680-mRNA-1
chr2_2 CDS 58417599 58417670 58417599 ID=Msa0260680-mRNA-1:cds;Parent=Msa0260680-mRNA-1
chr2_2 CDS 58417914 58418003 58417914 ID=Msa0260680-mRNA-1:cds;Parent=Msa0260680-mRNA-1
chr2_2 CDS 58418826 58418892 58418826 ID=Msa0260680-mRNA-1:cds;Parent=Msa0260680-mRNA-1
chr2_2 three_prime_UTR 58418893 58419307 58418893 ID=Msa0260680-mRNA-1:three_prime_utr;Parent=Msa0260680-mRNA-1
Gene Sequence

>Msa0260680

ATGTTCTGGGAAGTACTCAAGGGTTTTTCAATGGAAAACAGGAAGAAATTCTTAAAGTTTGTGACAGGTTGCTCTCGAGGACCATTACTTGGATTCCGATATCTTGAGCCTTTGTTCTGCATACAAAGGGCTGGAGGTAATGCTACCGAGGATGCTCTCGACAGATTACCAACAGCAGCTACCTGTATGAATCTGTTAAAACTTCCACCGTATAGAAGTAAGGATCAAATGGAATCCAAATTACTGTATGCCATAAATTCTGATGCTGGCTTTGATTTGAGCTAA

Protein sequence

>Msa0260680

MFWEVLKGFSMENRKKFLKFVTGCSRGPLLGFRYLEPLFCIQRAGGNATEDALDRLPTAATCMNLLKLPPYRSKDQMESKLLYAINSDAGFDLS*