Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205130 | RZB91195.1 | 63.043 | 184 | 60 | 4 | 2 | 182 | 150 | 328 | 1.05e-62 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205130 | sp|F4JT76|VPS54_ARATH | 50.581 | 172 | 82 | 2 | 11 | 182 | 467 | 635 | 8.34e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205130 | A0A445IYK7 | 63.043 | 184 | 60 | 4 | 2 | 182 | 150 | 328 | 5.03e-63 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0205130 | 0.804839 | 1.781300e-49 | -8.615850e-47 |
| Msa0009430 | Msa0205130 | 0.808559 | 2.918195e-50 | -8.615850e-47 |
| Msa0011170 | Msa0205130 | 0.812467 | 4.178993e-51 | -8.615850e-47 |
| Msa0021510 | Msa0205130 | 0.808666 | 2.768051e-50 | -8.615850e-47 |
| Msa0043980 | Msa0205130 | 0.812202 | 4.772919e-51 | -8.615850e-47 |
| Msa0044000 | Msa0205130 | 0.825215 | 5.293579e-54 | -8.615850e-47 |
| Msa0068680 | Msa0205130 | 0.802294 | 6.007315e-49 | -8.615850e-47 |
| Msa0074700 | Msa0205130 | 0.826180 | 3.124656e-54 | -8.615850e-47 |
| Msa0084380 | Msa0205130 | 0.810086 | 1.372682e-50 | -8.615850e-47 |
| Msa0090360 | Msa0205130 | 0.810908 | 9.121650e-51 | -8.615850e-47 |
| Msa0114060 | Msa0205130 | 0.838641 | 2.549513e-57 | -8.615850e-47 |
| Msa0127650 | Msa0205130 | 0.815607 | 8.478055e-52 | -8.615850e-47 |
| Msa0127800 | Msa0205130 | 0.810203 | 1.295282e-50 | -8.615850e-47 |
| Msa0159930 | Msa0205130 | 0.803409 | 3.534372e-49 | -8.615850e-47 |
| Msa0184040 | Msa0205130 | 0.806141 | 9.500202e-50 | -8.615850e-47 |
| Msa0189320 | Msa0205130 | 0.802644 | 5.086391e-49 | -8.615850e-47 |
| Msa0194950 | Msa0205130 | -0.814400 | 1.570971e-51 | -8.615850e-47 |
| Msa0205130 | Msa0211150 | 0.807056 | 6.091033e-50 | -8.615850e-47 |
| Msa0205130 | Msa0219590 | 0.810479 | 1.129303e-50 | -8.615850e-47 |
| Msa0205130 | Msa0260680 | 0.800793 | 1.220133e-48 | -8.615850e-47 |
| Msa0205130 | Msa0280090 | 0.816590 | 5.113217e-52 | -8.615850e-47 |
| Msa0205130 | Msa0286500 | 0.835169 | 1.962460e-56 | -8.615850e-47 |
| Msa0205130 | Msa0287410 | 0.803608 | 3.213596e-49 | -8.615850e-47 |
| Msa0205130 | Msa0305410 | 0.802242 | 6.156398e-49 | -8.615850e-47 |
| Msa0205130 | Msa0315440 | -0.801898 | 7.246617e-49 | -8.615850e-47 |
| Msa0205130 | Msa0398670 | 0.815329 | 9.773493e-52 | -8.615850e-47 |
| Msa0205130 | Msa0440750 | 0.804856 | 1.767293e-49 | -8.615850e-47 |
| Msa0205130 | Msa0455040 | 0.821285 | 4.379555e-53 | -8.615850e-47 |
| Msa0205130 | Msa0469990 | 0.804323 | 2.282274e-49 | -8.615850e-47 |
| Msa0205130 | Msa0477080 | 0.817131 | 3.866749e-52 | -8.615850e-47 |
| Msa0205130 | Msa0479970 | 0.813831 | 2.097634e-51 | -8.615850e-47 |
| Msa0205130 | Msa0493630 | 0.805847 | 1.095347e-49 | -8.615850e-47 |
| Msa0205130 | Msa0521430 | 0.801184 | 1.015071e-48 | -8.615850e-47 |
| Msa0205130 | Msa0548240 | 0.852916 | 3.371520e-61 | -8.615850e-47 |
| Msa0205130 | Msa0578860 | 0.804526 | 2.070919e-49 | -8.615850e-47 |
| Msa0205130 | Msa0602390 | 0.826494 | 2.630302e-54 | -8.615850e-47 |
| Msa0205130 | Msa0607050 | 0.833242 | 5.967267e-56 | -8.615850e-47 |
| Msa0205130 | Msa0610430 | 0.807493 | 4.919998e-50 | -8.615850e-47 |
| Msa0205130 | Msa0616160 | 0.821865 | 3.216988e-53 | -8.615850e-47 |
| Msa0205130 | Msa0623790 | 0.808176 | 3.522712e-50 | -8.615850e-47 |
| Msa0205130 | Msa0627450 | 0.811287 | 7.550353e-51 | -8.615850e-47 |
| Msa0205130 | Msa0649110 | 0.830614 | 2.659750e-55 | -8.615850e-47 |
| Msa0205130 | Msa0649490 | 0.806971 | 6.347127e-50 | -8.615850e-47 |
| Msa0205130 | Msa0663810 | 0.807928 | 3.977907e-50 | -8.615850e-47 |
| Msa0205130 | Msa0665860 | 0.801928 | 7.141892e-49 | -8.615850e-47 |
| Msa0205130 | Msa0679710 | 0.804460 | 2.137039e-49 | -8.615850e-47 |
| Msa0205130 | Msa0709400 | 0.850596 | 1.532710e-60 | -8.615850e-47 |
| Msa0205130 | Msa0740510 | 0.811547 | 6.629417e-51 | -8.615850e-47 |
| Msa0205130 | Msa0796700 | 0.822344 | 2.491403e-53 | -8.615850e-47 |
| Msa0205130 | Msa0802010 | 0.831743 | 1.403970e-55 | -8.615850e-47 |
| Msa0205130 | Msa0820770 | 0.813786 | 2.145785e-51 | -8.615850e-47 |
| Msa0205130 | Msa0820850 | 0.820653 | 6.122912e-53 | -8.615850e-47 |
| Msa0205130 | Msa0827350 | -0.807235 | 5.581740e-50 | -8.615850e-47 |
| Msa0205130 | Msa0832150 | 0.800412 | 1.459101e-48 | -8.615850e-47 |
| Msa0205130 | Msa0832340 | 0.816455 | 5.480815e-52 | -8.615850e-47 |
| Msa0205130 | Msa0849030 | 0.802209 | 6.253126e-49 | -8.615850e-47 |
| Msa0205130 | Msa0861090 | 0.804512 | 2.084789e-49 | -8.615850e-47 |
| Msa0205130 | Msa0861130 | 0.810734 | 9.950058e-51 | -8.615850e-47 |
| Msa0205130 | Msa0880020 | 0.823406 | 1.408949e-53 | -8.615850e-47 |
| Msa0205130 | Msa0945970 | 0.802812 | 4.697961e-49 | -8.615850e-47 |
| Msa0205130 | Msa0947660 | 0.812317 | 4.506044e-51 | -8.615850e-47 |
| Msa0205130 | Msa0963270 | 0.827036 | 1.953199e-54 | -8.615850e-47 |
| Msa0205130 | Msa0969810 | 0.824666 | 7.132777e-54 | -8.615850e-47 |
| Msa0205130 | Msa0974070 | 0.800895 | 1.162594e-48 | -8.615850e-47 |
| Msa0205130 | Msa0993290 | 0.800747 | 1.246834e-48 | -8.615850e-47 |
| Msa0205130 | Msa1034150 | 0.804392 | 2.208900e-49 | -8.615850e-47 |
| Msa0205130 | Msa1043390 | 0.807924 | 3.985831e-50 | -8.615850e-47 |
| Msa0205130 | Msa1043450 | 0.807705 | 4.435810e-50 | -8.615850e-47 |
| Msa0205130 | Msa1048280 | -0.827894 | 1.215441e-54 | -8.615850e-47 |
| Msa0205130 | Msa1075540 | 0.806254 | 8.995539e-50 | -8.615850e-47 |
| Msa0205130 | Msa1083300 | 0.804934 | 1.702035e-49 | -8.615850e-47 |
| Msa0205130 | Msa1109680 | 0.810946 | 8.949843e-51 | -8.615850e-47 |
| Msa0205130 | Msa1124960 | 0.844111 | 9.252483e-59 | -8.615850e-47 |
| Msa0205130 | Msa1159840 | 0.839068 | 1.976215e-57 | -8.615850e-47 |
| Msa0205130 | Msa1167340 | 0.820432 | 6.881417e-53 | -8.615850e-47 |
| Msa0205130 | Msa1170410 | 0.820588 | 6.335416e-53 | -8.615850e-47 |
| Msa0205130 | Msa1174040 | 0.806205 | 9.208471e-50 | -8.615850e-47 |
| Msa0205130 | Msa1244600 | 0.841511 | 4.545224e-58 | -8.615850e-47 |
| Msa0205130 | Msa1246510 | 0.811373 | 7.230769e-51 | -8.615850e-47 |
| Msa0205130 | Msa1253020 | 0.814233 | 1.710140e-51 | -8.615850e-47 |
| Msa0205130 | Msa1255330 | 0.800629 | 1.317845e-48 | -8.615850e-47 |
| Msa0205130 | Msa1279400 | 0.822022 | 2.958354e-53 | -8.615850e-47 |
| Msa0205130 | Msa1294120 | 0.802352 | 5.842294e-49 | -8.615850e-47 |
| Msa0205130 | Msa1305660 | 0.836519 | 8.924651e-57 | -8.615850e-47 |
| Msa0205130 | Msa1331000 | 0.800173 | 1.631587e-48 | -8.615850e-47 |
| Msa0205130 | Msa1353980 | 0.805018 | 1.634169e-49 | -8.615850e-47 |
| Msa0205130 | Msa1412640 | 0.806706 | 7.222394e-50 | -8.615850e-47 |
| Msa0205130 | Msa1432420 | 0.811594 | 6.475630e-51 | -8.615850e-47 |
| Msa0205130 | Msa1433390 | 0.807001 | 6.254267e-50 | -8.615850e-47 |
| Msa0205130 | Msa1444740 | 0.802707 | 4.936236e-49 | -8.615850e-47 |
| Msa0205130 | Msa1451560 | 0.800203 | 1.609300e-48 | -8.615850e-47 |
| Msa0205130 | Msa1452240 | 0.822860 | 1.889217e-53 | -8.615850e-47 |
| Msa0205130 | Msa1460830 | 0.800837 | 1.195082e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205130 | MtrunA17_Chr2g0303321 | 67.442 | 172 | 53 | 2 | 11 | 182 | 447 | 615 | 4.71e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205130 | AT4G19490.1 | 50.581 | 172 | 82 | 2 | 11 | 182 | 467 | 635 | 8.48e-37 | 135 |
| Msa0205130 | AT4G19490.2 | 50.581 | 172 | 82 | 2 | 11 | 182 | 467 | 635 | 8.48e-37 | 135 |
Find 44 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGGAGCTTTCTTTATTA+AGG | 0.147590 | 2_1:+31449073 | None:intergenic |
| CACTGTTGATATTCAATTCT+TGG | 0.241479 | 2_1:-31449283 | Msa0205130:three_prime_UTR |
| TCATTTCTTTGCGGTGAATA+TGG | 0.269801 | 2_1:+31451546 | None:intergenic |
| GAGGACTTCATTGCAGTTAT+AGG | 0.306015 | 2_1:-31449953 | Msa0205130:CDS |
| CAAGGAGCTTTCTTTATTAA+GGG | 0.328733 | 2_1:+31449074 | None:intergenic |
| TTTGTGATTGCAGGCACATT+TGG | 0.361631 | 2_1:-31451721 | Msa0205130:intron |
| TCTTAGGGAGACTATGTATT+GGG | 0.385098 | 2_1:-31451878 | None:intergenic |
| CTAACAGATTGGTGGAAGAT+TGG | 0.387747 | 2_1:-31449842 | Msa0205130:intron |
| GCCATGAACCTCGCTTTCTT+CGG | 0.418344 | 2_1:+31451581 | None:intergenic |
| TAACAGATTGGTGGAAGATT+GGG | 0.423692 | 2_1:-31449841 | Msa0205130:intron |
| GTAAGGAAGAAGAGAATAAG+AGG | 0.429862 | 2_1:+31449193 | None:intergenic |
| ACTAAACTGTGTGCTATTTG+AGG | 0.448369 | 2_1:-31449110 | Msa0205130:three_prime_UTR |
| CTAAACTGTGTGCTATTTGA+GGG | 0.456351 | 2_1:-31449109 | Msa0205130:three_prime_UTR |
| CCTATGGCATCATTTCTTTG+CGG | 0.468501 | 2_1:+31451537 | None:intergenic |
| TCCGAAGAAAGCGAGGTTCA+TGG | 0.472844 | 2_1:-31451582 | Msa0205130:CDS |
| TTCTTAGGGAGACTATGTAT+TGG | 0.478379 | 2_1:-31451879 | None:intergenic |
| CATTAATATCCATGGCTGTA+AGG | 0.483733 | 2_1:+31449176 | None:intergenic |
| GTGATACTGCTCACAGAAGA+TGG | 0.485315 | 2_1:-31450063 | Msa0205130:CDS |
| GAGCATTGTGTAGCCGTGAT+TGG | 0.493080 | 2_1:-31449332 | Msa0205130:three_prime_UTR |
| TCTCTTCTTCCTTACAGCCA+TGG | 0.499409 | 2_1:-31449185 | Msa0205130:three_prime_UTR |
| GTTGCTGCAGCAATTGCTTG+TGG | 0.512434 | 2_1:-31451624 | Msa0205130:CDS |
| TCACCTTGTATATCTACTAA+AGG | 0.518412 | 2_1:+31449367 | None:intergenic |
| ATTGCAGGCACATTTGGTGC+GGG | 0.520540 | 2_1:-31451715 | Msa0205130:intron |
| AGCATATGTATTCTGTGTCA+AGG | 0.527620 | 2_1:-31451840 | Msa0205130:CDS |
| GAAGATGGGCAAAGCTTCTG+AGG | 0.536203 | 2_1:-31450048 | Msa0205130:CDS |
| TCCCTGAAAAGAGAGACCTA+TGG | 0.541882 | 2_1:+31451521 | None:intergenic |
| TATTGATGCATTAATATCCA+TGG | 0.548611 | 2_1:+31449168 | None:intergenic |
| GTTGCTCAAAATCCCCTCAA+TGG | 0.551742 | 2_1:+31451674 | None:intergenic |
| AGATTGGGATACAGCATCGA+TGG | 0.561671 | 2_1:-31449826 | Msa0205130:CDS |
| AGGCCTTTAGTAGATATACA+AGG | 0.564998 | 2_1:-31449370 | Msa0205130:CDS |
| TTCTGCAAAATGACCAATCA+CGG | 0.571019 | 2_1:+31449319 | None:intergenic |
| GCATATGTATTCTGTGTCAA+GGG | 0.580748 | 2_1:-31451839 | Msa0205130:intron |
| CATTCAAACTAACAGATTGG+TGG | 0.591860 | 2_1:-31449850 | Msa0205130:intron |
| TGATACTGCTCACAGAAGAT+GGG | 0.598497 | 2_1:-31450062 | Msa0205130:CDS |
| CCGCAAAGAAATGATGCCAT+AGG | 0.600791 | 2_1:-31451537 | Msa0205130:CDS |
| TGCTATTTGAGGGCATACAT+CGG | 0.602602 | 2_1:-31449099 | Msa0205130:three_prime_UTR |
| GATTGGGATACAGCATCGAT+GGG | 0.628768 | 2_1:-31449825 | Msa0205130:CDS |
| GATTGCAGGCACATTTGGTG+CGG | 0.637237 | 2_1:-31451716 | Msa0205130:intron |
| GCAAAGCTTCTGAGGGATCG+TGG | 0.638563 | 2_1:-31450040 | Msa0205130:CDS |
| AGAAACATCCGAAGAAAGCG+AGG | 0.643307 | 2_1:-31451589 | Msa0205130:CDS |
| AAGATGGGCAAAGCTTCTGA+GGG | 0.648096 | 2_1:-31450047 | Msa0205130:CDS |
| AGAAATTGCAGAGATTGCAG+AGG | 0.663419 | 2_1:+31449995 | None:intergenic |
| GACAGTGCAGTCATACACCA+AGG | 0.719412 | 2_1:-31449803 | Msa0205130:intron |
| ATACATTGACAGCATCAACG+AGG | 0.785944 | 2_1:-31449972 | Msa0205130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATGTAGTTAATT+AGG | - | chr2_1:31449907-31449926 | Msa0205130:intron | 10.0% |
| !!! | AAAAAATTCAGGTTAAATAT+TGG | - | chr2_1:31449480-31449499 | Msa0205130:intron | 15.0% |
| !! | ATAATTCTATTGTAATTTGA+CGG | - | chr2_1:31449621-31449640 | Msa0205130:intron | 15.0% |
| !! | TCTTATTATTTAATCCTAAT+GGG | + | chr2_1:31449957-31449976 | None:intergenic | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | - | chr2_1:31450004-31450023 | Msa0205130:CDS | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | - | chr2_1:31450005-31450024 | Msa0205130:CDS | 15.0% |
| !! | ACAACTAAATATAAAAGTAA+TGG | + | chr2_1:31450771-31450790 | None:intergenic | 15.0% |
| !!! | ATTCAACAAATATTTTTTTG+AGG | + | chr2_1:31451177-31451196 | None:intergenic | 15.0% |
| !! | ATGTTAATTTCATTTGTATT+TGG | - | chr2_1:31451273-31451292 | Msa0205130:intron | 15.0% |
| !! | TTGATTCTTTCTTTATTGAA+CGG | - | chr2_1:31449697-31449716 | Msa0205130:intron | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | + | chr2_1:31449958-31449977 | None:intergenic | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | - | chr2_1:31449956-31449975 | Msa0205130:CDS | 20.0% |
| !! | TAAATAATAAGAGGCTAATT+AGG | - | chr2_1:31449965-31449984 | Msa0205130:CDS | 20.0% |
| !! | AAATAATAAGAGGCTAATTA+GGG | - | chr2_1:31449966-31449985 | Msa0205130:CDS | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | - | chr2_1:31450006-31450025 | Msa0205130:CDS | 20.0% |
| !! | AGATGGTAATTACAAAAATA+GGG | + | chr2_1:31450161-31450180 | None:intergenic | 20.0% |
| !! | AACCTACTTTATAAAATGAT+AGG | + | chr2_1:31450269-31450288 | None:intergenic | 20.0% |
| !! | CCTAAAAATAATATGGATAA+CGG | - | chr2_1:31450648-31450667 | Msa0205130:intron | 20.0% |
| !! | AATTATACAAGTATATCTAG+TGG | + | chr2_1:31450697-31450716 | None:intergenic | 20.0% |
| !! | ACTAGATATACTTGTATAAT+TGG | - | chr2_1:31450696-31450715 | Msa0205130:intron | 20.0% |
| !! | ATACTTGTATAATTGGTAAA+TGG | - | chr2_1:31450703-31450722 | Msa0205130:intron | 20.0% |
| !!! | GTATGTACATATTTTCATTT+TGG | - | chr2_1:31451016-31451035 | Msa0205130:intron | 20.0% |
| !!! | AAAACAATGTTGTTTATTGA+AGG | - | chr2_1:31451339-31451358 | Msa0205130:intron | 20.0% |
| !! | AATTTAGTATTAGAAAGCTA+AGG | + | chr2_1:31451530-31451549 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTGTGATTGC+AGG | - | chr2_1:31449212-31449231 | Msa0205130:three_prime_UTR | 25.0% |
| !!! | GAATTTTTTTGACTTGTTAG+AGG | + | chr2_1:31449469-31449488 | None:intergenic | 25.0% |
| ! | CTAACAAGTCAAAAAAATTC+AGG | - | chr2_1:31449469-31449488 | Msa0205130:intron | 25.0% |
| !!! | GATTGAACTTTTGAGTTAAT+TGG | + | chr2_1:31449813-31449832 | None:intergenic | 25.0% |
| ! | TTTGTATATAAAGGGGAATT+AGG | - | chr2_1:31450013-31450032 | Msa0205130:CDS | 25.0% |
| ! | TGAATGAAAATAGTAGTAGA+AGG | + | chr2_1:31450125-31450144 | None:intergenic | 25.0% |
| ! | CAGATGGTAATTACAAAAAT+AGG | + | chr2_1:31450162-31450181 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTATAAAACTGAC+AGG | + | chr2_1:31450233-31450252 | None:intergenic | 25.0% |
| !! | GTCCTATCATTTTATAAAGT+AGG | - | chr2_1:31450264-31450283 | Msa0205130:intron | 25.0% |
| ! | AGTAGGTTTAAAAAACGAAA+TGG | - | chr2_1:31450281-31450300 | Msa0205130:intron | 25.0% |
| ! | GTAGGTTTAAAAAACGAAAT+GGG | - | chr2_1:31450282-31450301 | Msa0205130:intron | 25.0% |
| ! | TATAGAATATAGATGGCTTA+CGG | + | chr2_1:31450385-31450404 | None:intergenic | 25.0% |
| ! | GATAAGATAAAACATTTGAG+AGG | + | chr2_1:31450516-31450535 | None:intergenic | 25.0% |
| !! | ATGTAGTGTATTTCTTTTAC+TGG | - | chr2_1:31450589-31450608 | Msa0205130:intron | 25.0% |
| !!! | CCGTTATCCATATTATTTTT+AGG | + | chr2_1:31450651-31450670 | None:intergenic | 25.0% |
| ! | TTGAGAACATCAAACAAATA+GGG | + | chr2_1:31450796-31450815 | None:intergenic | 25.0% |
| ! | TTTGAGAACATCAAACAAAT+AGG | + | chr2_1:31450797-31450816 | None:intergenic | 25.0% |
| ! | TTTGATGTTCTCAAAAAATC+TGG | - | chr2_1:31450802-31450821 | Msa0205130:intron | 25.0% |
| ! | TGAGGAAATATTAATAACCT+TGG | + | chr2_1:31451159-31451178 | None:intergenic | 25.0% |
| ! | GTATGCTATCATTAACTAAT+TGG | + | chr2_1:31451497-31451516 | None:intergenic | 25.0% |
| !!! | AATTCTAATTCTGCTTTTTC+AGG | - | chr2_1:31451552-31451571 | Msa0205130:CDS | 25.0% |
| ! | TATTGATGCATTAATATCCA+TGG | + | chr2_1:31451777-31451796 | None:intergenic | 25.0% |
| ACAACTAAACTTCAGTAACA+TGG | + | chr2_1:31449135-31449154 | None:intergenic | 30.0% | |
| ATCAAACAGTTCAAACTTAG+AGG | + | chr2_1:31449682-31449701 | None:intergenic | 30.0% | |
| GAATGAAAACTTTCCCTTTA+TGG | - | chr2_1:31449738-31449757 | Msa0205130:intron | 30.0% | |
| ACCAATATGGATTCCATAAA+GGG | + | chr2_1:31449754-31449773 | None:intergenic | 30.0% | |
| TACCAATATGGATTCCATAA+AGG | + | chr2_1:31449755-31449774 | None:intergenic | 30.0% | |
| TTTATGGAATCCATATTGGT+AGG | - | chr2_1:31449754-31449773 | Msa0205130:intron | 30.0% | |
| ACTCAAAAGTTCAATCTGAT+AGG | - | chr2_1:31449817-31449836 | Msa0205130:CDS | 30.0% | |
| ! | ACACACAAAAGGTTTTTGTT+AGG | - | chr2_1:31449859-31449878 | Msa0205130:intron | 30.0% |
| TCAAGTAGATTATTAGTGAG+TGG | - | chr2_1:31449931-31449950 | Msa0205130:intron | 30.0% | |
| AAGAATGAAGATGAAACAGA+TGG | + | chr2_1:31450178-31450197 | None:intergenic | 30.0% | |
| TGTCATTGTGGTTCAATTAT+AGG | - | chr2_1:31450204-31450223 | Msa0205130:intron | 30.0% | |
| CCATCTATATTCTATAGCTT+GGG | - | chr2_1:31450389-31450408 | Msa0205130:intron | 30.0% | |
| !! | TACTGATTCAACGTTAGTTT+AGG | + | chr2_1:31450483-31450502 | None:intergenic | 30.0% |
| AAACTAACGTTGAATCAGTA+TGG | - | chr2_1:31450483-31450502 | Msa0205130:intron | 30.0% | |
| !!! | TAGTCATTTTTCCGTTTTAG+AGG | - | chr2_1:31450555-31450574 | Msa0205130:intron | 30.0% |
| CTGCTCTCCTAAAAATAATA+TGG | - | chr2_1:31450641-31450660 | Msa0205130:intron | 30.0% | |
| ! | CAATCTGTTAGTTTGAATGT+GGG | + | chr2_1:31451091-31451110 | None:intergenic | 30.0% |
| AATAAACGTGGAGGAAAATA+TGG | + | chr2_1:31451237-31451256 | None:intergenic | 30.0% | |
| AACTGTCAAACTAATAAACG+TGG | + | chr2_1:31451249-31451268 | None:intergenic | 30.0% | |
| TTGGTCAACTGACATATATT+CGG | - | chr2_1:31451292-31451311 | Msa0205130:intron | 30.0% | |
| TATCATTAACTAATTGGCCA+GGG | + | chr2_1:31451491-31451510 | None:intergenic | 30.0% | |
| AGTTAATGATAGCATACACA+AGG | - | chr2_1:31451500-31451519 | Msa0205130:CDS | 30.0% | |
| TCACCTTGTATATCTACTAA+AGG | + | chr2_1:31451578-31451597 | None:intergenic | 30.0% | |
| CACTGTTGATATTCAATTCT+TGG | - | chr2_1:31451659-31451678 | Msa0205130:CDS | 30.0% | |
| AGCATATGTATTCTGTGTCA+AGG | - | chr2_1:31449102-31449121 | Msa0205130:three_prime_UTR | 35.0% | |
| GCATATGTATTCTGTGTCAA+GGG | - | chr2_1:31449103-31449122 | Msa0205130:three_prime_UTR | 35.0% | |
| ! | TTAGTTGTCCTGTTTTCCAA+TGG | - | chr2_1:31449147-31449166 | Msa0205130:three_prime_UTR | 35.0% |
| TGCTGTAAAAAAAGCCATTG+AGG | - | chr2_1:31449254-31449273 | Msa0205130:three_prime_UTR | 35.0% | |
| GCTGTAAAAAAAGCCATTGA+GGG | - | chr2_1:31449255-31449274 | Msa0205130:three_prime_UTR | 35.0% | |
| CTGTAAAAAAAGCCATTGAG+GGG | - | chr2_1:31449256-31449275 | Msa0205130:three_prime_UTR | 35.0% | |
| TCATTTCTTTGCGGTGAATA+TGG | + | chr2_1:31449399-31449418 | None:intergenic | 35.0% | |
| TATACTGCATTAGCAAGTCT+GGG | + | chr2_1:31449568-31449587 | None:intergenic | 35.0% | |
| TCCCTTTATGGAATCCATAT+TGG | - | chr2_1:31449750-31449769 | Msa0205130:intron | 35.0% | |
| GAAAAGAGTTCCTACCAATA+TGG | + | chr2_1:31449767-31449786 | None:intergenic | 35.0% | |
| AAGTTCAATCTGATAGGTGA+AGG | - | chr2_1:31449823-31449842 | Msa0205130:CDS | 35.0% | |
| TTGTTAGGATCCAATATGAG+AGG | - | chr2_1:31449874-31449893 | Msa0205130:intron | 35.0% | |
| TGTTAGGATCCAATATGAGA+GGG | - | chr2_1:31449875-31449894 | Msa0205130:intron | 35.0% | |
| CTTAAAACACCCTCTCATAT+TGG | + | chr2_1:31449887-31449906 | None:intergenic | 35.0% | |
| ! | ATTCTTTCGTTGTGTCATTG+TGG | - | chr2_1:31450192-31450211 | Msa0205130:intron | 35.0% |
| AAATGGGACAAAATTGTGAG+AGG | - | chr2_1:31450298-31450317 | Msa0205130:intron | 35.0% | |
| GCCATCTATATTCTATAGCT+TGG | - | chr2_1:31450388-31450407 | Msa0205130:intron | 35.0% | |
| CCCAAGCTATAGAATATAGA+TGG | + | chr2_1:31450392-31450411 | None:intergenic | 35.0% | |
| ! | TTCAACGTTAGTTTAGGTGA+TGG | + | chr2_1:31450477-31450496 | None:intergenic | 35.0% |
| ACGGAAAAATGACTACTGAA+TGG | + | chr2_1:31450550-31450569 | None:intergenic | 35.0% | |
| ! | AAATCCTAGAGCCTCTAAAA+CGG | + | chr2_1:31450569-31450588 | None:intergenic | 35.0% |
| CGGAAGTTAAGAACATGATT+TGG | - | chr2_1:31450668-31450687 | Msa0205130:intron | 35.0% | |
| GCAATACATCATCTCTGTTT+GGG | + | chr2_1:31450829-31450848 | None:intergenic | 35.0% | |
| TGCAATACATCATCTCTGTT+TGG | + | chr2_1:31450830-31450849 | None:intergenic | 35.0% | |
| TGAATGTGGGAATTCAATCA+GGG | + | chr2_1:31451078-31451097 | None:intergenic | 35.0% | |
| TTGAATGTGGGAATTCAATC+AGG | + | chr2_1:31451079-31451098 | None:intergenic | 35.0% | |
| ! | CCAATCTGTTAGTTTGAATG+TGG | + | chr2_1:31451092-31451111 | None:intergenic | 35.0% |
| CCACATTCAAACTAACAGAT+TGG | - | chr2_1:31451089-31451108 | Msa0205130:intron | 35.0% | |
| CATTCAAACTAACAGATTGG+TGG | - | chr2_1:31451092-31451111 | Msa0205130:intron | 35.0% | |
| TAACAGATTGGTGGAAGATT+GGG | - | chr2_1:31451101-31451120 | Msa0205130:intron | 35.0% | |
| TGTCAAACTAATAAACGTGG+AGG | + | chr2_1:31451246-31451265 | None:intergenic | 35.0% | |
| TGGTCAACTGACATATATTC+GGG | - | chr2_1:31451293-31451312 | Msa0205130:intron | 35.0% | |
| ! | AAAATCCACGTTTTTCTGTC+AGG | + | chr2_1:31451435-31451454 | None:intergenic | 35.0% |
| ATCATTAACTAATTGGCCAG+GGG | + | chr2_1:31451490-31451509 | None:intergenic | 35.0% | |
| CTATCATTAACTAATTGGCC+AGG | + | chr2_1:31451492-31451511 | None:intergenic | 35.0% | |
| AGGCCTTTAGTAGATATACA+AGG | - | chr2_1:31451572-31451591 | Msa0205130:CDS | 35.0% | |
| TTCTGCAAAATGACCAATCA+CGG | + | chr2_1:31451626-31451645 | None:intergenic | 35.0% | |
| GTAAGGAAGAAGAGAATAAG+AGG | + | chr2_1:31451752-31451771 | None:intergenic | 35.0% | |
| CATTAATATCCATGGCTGTA+AGG | + | chr2_1:31451769-31451788 | None:intergenic | 35.0% | |
| !! | ACTAAACTGTGTGCTATTTG+AGG | - | chr2_1:31451832-31451851 | Msa0205130:intron | 35.0% |
| !! | CTAAACTGTGTGCTATTTGA+GGG | - | chr2_1:31451833-31451852 | Msa0205130:intron | 35.0% |
| ! | TTGTCCTGTTTTCCAATGGT+TGG | - | chr2_1:31449151-31449170 | Msa0205130:three_prime_UTR | 40.0% |
| ! | TCTGATAAAGTGCCAACCAT+TGG | + | chr2_1:31449166-31449185 | None:intergenic | 40.0% |
| TTTGTGATTGCAGGCACATT+TGG | - | chr2_1:31449221-31449240 | Msa0205130:three_prime_UTR | 40.0% | |
| ! | GGGATTTTGAGCAACTATGA+TGG | - | chr2_1:31449276-31449295 | Msa0205130:three_prime_UTR | 40.0% |
| CCTATGGCATCATTTCTTTG+CGG | + | chr2_1:31449408-31449427 | None:intergenic | 40.0% | |
| CTATACTGCATTAGCAAGTC+TGG | + | chr2_1:31449569-31449588 | None:intergenic | 40.0% | |
| ACAGTTCAAACTTAGAGGAG+AGG | + | chr2_1:31449677-31449696 | None:intergenic | 40.0% | |
| TTATTAGTGAGTGGCCCATT+AGG | - | chr2_1:31449940-31449959 | Msa0205130:intron | 40.0% | |
| GCTTGGGTGTCTAATATATC+TGG | - | chr2_1:31450405-31450424 | Msa0205130:intron | 40.0% | |
| !!! | TTTTCCGTTTTAGAGGCTCT+AGG | - | chr2_1:31450562-31450581 | Msa0205130:intron | 40.0% |
| TGATACTGCTCACAGAAGAT+GGG | - | chr2_1:31450880-31450899 | Msa0205130:intron | 40.0% | |
| AGAAATTGCAGAGATTGCAG+AGG | + | chr2_1:31450950-31450969 | None:intergenic | 40.0% | |
| ATACATTGACAGCATCAACG+AGG | - | chr2_1:31450970-31450989 | Msa0205130:intron | 40.0% | |
| GAGGACTTCATTGCAGTTAT+AGG | - | chr2_1:31450989-31451008 | Msa0205130:intron | 40.0% | |
| CTAACAGATTGGTGGAAGAT+TGG | - | chr2_1:31451100-31451119 | Msa0205130:intron | 40.0% | |
| ! | AACCTACTGTATTTGCTAGC+TGG | + | chr2_1:31451365-31451384 | None:intergenic | 40.0% |
| GCTAGCAAATACAGTAGGTT+AGG | - | chr2_1:31451365-31451384 | Msa0205130:intron | 40.0% | |
| CCATGCAACGGAAAAACAAT+CGG | + | chr2_1:31451401-31451420 | None:intergenic | 40.0% | |
| GTCTCTTCTTATCCATGCAA+CGG | + | chr2_1:31451413-31451432 | None:intergenic | 40.0% | |
| TCATTAACTAATTGGCCAGG+GGG | + | chr2_1:31451489-31451508 | None:intergenic | 40.0% | |
| ! | TTTTGCAGAAGTTCTGTAGC+AGG | - | chr2_1:31451636-31451655 | Msa0205130:CDS | 40.0% |
| ! | TGCTATTTGAGGGCATACAT+CGG | - | chr2_1:31451843-31451862 | Msa0205130:CDS | 40.0% |
| AGTGCCAACCATTGGAAAAC+AGG | + | chr2_1:31449158-31449177 | None:intergenic | 45.0% | |
| GTTGCTCAAAATCCCCTCAA+TGG | + | chr2_1:31449271-31449290 | None:intergenic | 45.0% | |
| AGAAACATCCGAAGAAAGCG+AGG | - | chr2_1:31449353-31449372 | Msa0205130:exon | 45.0% | |
| CCGCAAAGAAATGATGCCAT+AGG | - | chr2_1:31449405-31449424 | Msa0205130:intron | 45.0% | |
| ! | TGCCATAGGTCTCTCTTTTC+AGG | - | chr2_1:31449419-31449438 | Msa0205130:intron | 45.0% |
| ! | GCCATAGGTCTCTCTTTTCA+GGG | - | chr2_1:31449420-31449439 | Msa0205130:intron | 45.0% |
| TCCCTGAAAAGAGAGACCTA+TGG | + | chr2_1:31449424-31449443 | None:intergenic | 45.0% | |
| !!! | ATTGGCTTTTGACAGTGTCG+TGG | + | chr2_1:31449795-31449814 | None:intergenic | 45.0% |
| ! | ATAGGTGAAGGCACACACAA+AGG | - | chr2_1:31449835-31449854 | Msa0205130:CDS | 45.0% |
| ! | CACACAAAGGCACACACAAA+AGG | - | chr2_1:31449848-31449867 | Msa0205130:intron | 45.0% |
| ! | AGGGGAATTAGGAGTTCTAG+AGG | - | chr2_1:31450024-31450043 | Msa0205130:CDS | 45.0% |
| !! | GGAATTAGGAGTTCTAGAGG+AGG | - | chr2_1:31450027-31450046 | Msa0205130:CDS | 45.0% |
| TTCGATGGCACAAGTCAAAG+AGG | + | chr2_1:31450075-31450094 | None:intergenic | 45.0% | |
| !! | CTTCTAGAGCAAAGCTTCGA+TGG | + | chr2_1:31450090-31450109 | None:intergenic | 45.0% |
| GTGATACTGCTCACAGAAGA+TGG | - | chr2_1:31450879-31450898 | Msa0205130:intron | 45.0% | |
| AAGATGGGCAAAGCTTCTGA+GGG | - | chr2_1:31450895-31450914 | Msa0205130:intron | 45.0% | |
| ! | AGATTGGGATACAGCATCGA+TGG | - | chr2_1:31451116-31451135 | Msa0205130:intron | 45.0% |
| !! | GATTGGGATACAGCATCGAT+GGG | - | chr2_1:31451117-31451136 | Msa0205130:intron | 45.0% |
| ATTCGGGCAAGAGTTTGATC+TGG | - | chr2_1:31451309-31451328 | Msa0205130:intron | 45.0% | |
| !! | CCGATTGTTTTTCCGTTGCA+TGG | - | chr2_1:31451398-31451417 | Msa0205130:intron | 45.0% |
| AGAGACCTGACAGAAAAACG+TGG | - | chr2_1:31451427-31451446 | Msa0205130:intron | 45.0% | |
| ! | AGATTTCTGATTTTCCCCCC+TGG | - | chr2_1:31451471-31451490 | Msa0205130:intron | 45.0% |
| CATTAACTAATTGGCCAGGG+GGG | + | chr2_1:31451488-31451507 | None:intergenic | 45.0% | |
| TCTCTTCTTCCTTACAGCCA+TGG | - | chr2_1:31451757-31451776 | Msa0205130:intron | 45.0% | |
| ! | GATTGCAGGCACATTTGGTG+CGG | - | chr2_1:31449226-31449245 | Msa0205130:three_prime_UTR | 50.0% |
| !! | ATTGCAGGCACATTTGGTGC+GGG | - | chr2_1:31449227-31449246 | Msa0205130:three_prime_UTR | 50.0% |
| GTTGCTGCAGCAATTGCTTG+TGG | - | chr2_1:31449318-31449337 | Msa0205130:three_prime_UTR | 50.0% | |
| TCCGAAGAAAGCGAGGTTCA+TGG | - | chr2_1:31449360-31449379 | Msa0205130:exon | 50.0% | |
| GCCATGAACCTCGCTTTCTT+CGG | + | chr2_1:31449364-31449383 | None:intergenic | 50.0% | |
| GAAGATGGGCAAAGCTTCTG+AGG | - | chr2_1:31450894-31450913 | Msa0205130:intron | 50.0% | |
| GACAGTGCAGTCATACACCA+AGG | - | chr2_1:31451139-31451158 | Msa0205130:intron | 50.0% | |
| GGCCAGCTAGCAAATACAGT+AGG | - | chr2_1:31451360-31451379 | Msa0205130:intron | 50.0% | |
| ! | GAGCATTGTGTAGCCGTGAT+TGG | - | chr2_1:31451610-31451629 | Msa0205130:CDS | 50.0% |
| ! | GCAAAGCTTCTGAGGGATCG+TGG | - | chr2_1:31450902-31450921 | Msa0205130:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 31449077 | 31451887 | 31449077 | ID=Msa0205130;Name=Msa0205130 |
| chr2_1 | mRNA | 31449077 | 31451887 | 31449077 | ID=Msa0205130-mRNA-1;Parent=Msa0205130;Name=Msa0205130-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.75|0.8|1|1|1|5|290|187 |
| chr2_1 | exon | 31449077 | 31449390 | 31449077 | ID=Msa0205130-mRNA-1:exon:11069;Parent=Msa0205130-mRNA-1 |
| chr2_1 | exon | 31449804 | 31449857 | 31449804 | ID=Msa0205130-mRNA-1:exon:11068;Parent=Msa0205130-mRNA-1 |
| chr2_1 | exon | 31449949 | 31450129 | 31449949 | ID=Msa0205130-mRNA-1:exon:11067;Parent=Msa0205130-mRNA-1 |
| chr2_1 | exon | 31451474 | 31451730 | 31451474 | ID=Msa0205130-mRNA-1:exon:11066;Parent=Msa0205130-mRNA-1 |
| chr2_1 | exon | 31451840 | 31451887 | 31451840 | ID=Msa0205130-mRNA-1:exon:11065;Parent=Msa0205130-mRNA-1 |
| chr2_1 | CDS | 31451840 | 31451887 | 31451840 | ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1 |
| chr2_1 | CDS | 31451474 | 31451730 | 31451474 | ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1 |
| chr2_1 | CDS | 31449949 | 31450129 | 31449949 | ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1 |
| chr2_1 | CDS | 31449804 | 31449857 | 31449804 | ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1 |
| chr2_1 | CDS | 31449367 | 31449390 | 31449367 | ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1 |
| chr2_1 | three_prime_UTR | 31449077 | 31449366 | 31449077 | ID=Msa0205130-mRNA-1:three_prime_utr;Parent=Msa0205130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
