AlfalfaGEDB | Msa0205130

M. sativa cultivar zhongmu-4 / Msa0205130

KEGG: K17600
GO: GO:0000139 GO:0000149 GO:0000938 GO:0001894 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006892 GO:0006896 GO:0006996 GO:0007010 GO:0007034 GO:0007041 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0019905 GO:0031090 GO:0031410 GO:0031974 GO:0031981 GO:0031982 GO:0031984 GO:0032501 GO:0032588 GO:0032991 GO:0040008 GO:0042147 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045103 GO:0045104 GO:0046907 GO:0048193 GO:0048471 GO:0048871 GO:0048872 GO:0048873 GO:0050789 GO:0050879 GO:0050881 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060052 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205130	RZB91195.1	63.043	184	60	4	2	182	150	328	1.05e-62	213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205130	sp\|F4JT76\|VPS54_ARATH	50.581	172	82	2	11	182	467	635	8.34e-36	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205130	A0A445IYK7	63.043	184	60	4	2	182	150	328	5.03e-63	213

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0205130	0.804839	1.781300e-49	-8.615850e-47
Msa0009430	Msa0205130	0.808559	2.918195e-50	-8.615850e-47
Msa0011170	Msa0205130	0.812467	4.178993e-51	-8.615850e-47
Msa0021510	Msa0205130	0.808666	2.768051e-50	-8.615850e-47
Msa0043980	Msa0205130	0.812202	4.772919e-51	-8.615850e-47
Msa0044000	Msa0205130	0.825215	5.293579e-54	-8.615850e-47
Msa0068680	Msa0205130	0.802294	6.007315e-49	-8.615850e-47
Msa0074700	Msa0205130	0.826180	3.124656e-54	-8.615850e-47
Msa0084380	Msa0205130	0.810086	1.372682e-50	-8.615850e-47
Msa0090360	Msa0205130	0.810908	9.121650e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205130	MtrunA17_Chr2g0303321	67.442	172	53	2	11	182	447	615	4.71e-60	201

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0205130	AT4G19490.1	50.581	172	82	2	11	182	467	635	8.48e-37	135
Msa0205130	AT4G19490.2	50.581	172	82	2	11	182	467	635	8.48e-37	135

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Find 44 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGGGCAAAGCTTCTGA+GGG	0.648096	2_1:-31450047	Msa0205130:CDS
ACTAAACTGTGTGCTATTTG+AGG	0.448369	2_1:-31449110	Msa0205130:three_prime_UTR
AGAAACATCCGAAGAAAGCG+AGG	0.643307	2_1:-31451589	Msa0205130:CDS
AGAAATTGCAGAGATTGCAG+AGG	0.663419	2_1:+31449995	None:intergenic
AGATTGGGATACAGCATCGA+TGG	0.561671	2_1:-31449826	Msa0205130:CDS
AGCATATGTATTCTGTGTCA+AGG	0.527620	2_1:-31451840	Msa0205130:CDS
AGGCCTTTAGTAGATATACA+AGG	0.564998	2_1:-31449370	Msa0205130:CDS
ATACATTGACAGCATCAACG+AGG	0.785944	2_1:-31449972	Msa0205130:CDS
ATTGCAGGCACATTTGGTGC+GGG	0.520540	2_1:-31451715	Msa0205130:intron
CAAGGAGCTTTCTTTATTAA+GGG	0.328733	2_1:+31449074	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACTAAACTTCAGTAACA+TGG	+	chr2_1:31449135-31449154	None:intergenic	30.0%
ATCAAACAGTTCAAACTTAG+AGG	+	chr2_1:31449682-31449701	None:intergenic	30.0%
GAATGAAAACTTTCCCTTTA+TGG	-	chr2_1:31449738-31449757	Msa0205130:intron	30.0%
ACCAATATGGATTCCATAAA+GGG	+	chr2_1:31449754-31449773	None:intergenic	30.0%
TACCAATATGGATTCCATAA+AGG	+	chr2_1:31449755-31449774	None:intergenic	30.0%
TTTATGGAATCCATATTGGT+AGG	-	chr2_1:31449754-31449773	Msa0205130:intron	30.0%
ACTCAAAAGTTCAATCTGAT+AGG	-	chr2_1:31449817-31449836	Msa0205130:CDS	30.0%
TCAAGTAGATTATTAGTGAG+TGG	-	chr2_1:31449931-31449950	Msa0205130:intron	30.0%
AAGAATGAAGATGAAACAGA+TGG	+	chr2_1:31450178-31450197	None:intergenic	30.0%
TGTCATTGTGGTTCAATTAT+AGG	-	chr2_1:31450204-31450223	Msa0205130:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	31449077	31451887	31449077	ID=Msa0205130;Name=Msa0205130
chr2_1	mRNA	31449077	31451887	31449077	ID=Msa0205130-mRNA-1;Parent=Msa0205130;Name=Msa0205130-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0\|0.75\|0.8\|1\|1\|1\|5\|290\|187
chr2_1	exon	31449077	31449390	31449077	ID=Msa0205130-mRNA-1:exon:11069;Parent=Msa0205130-mRNA-1
chr2_1	exon	31449804	31449857	31449804	ID=Msa0205130-mRNA-1:exon:11068;Parent=Msa0205130-mRNA-1
chr2_1	exon	31449949	31450129	31449949	ID=Msa0205130-mRNA-1:exon:11067;Parent=Msa0205130-mRNA-1
chr2_1	exon	31451474	31451730	31451474	ID=Msa0205130-mRNA-1:exon:11066;Parent=Msa0205130-mRNA-1
chr2_1	exon	31451840	31451887	31451840	ID=Msa0205130-mRNA-1:exon:11065;Parent=Msa0205130-mRNA-1
chr2_1	CDS	31451840	31451887	31451840	ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1
chr2_1	CDS	31451474	31451730	31451474	ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1
chr2_1	CDS	31449949	31450129	31449949	ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1
chr2_1	CDS	31449804	31449857	31449804	ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1
chr2_1	CDS	31449367	31449390	31449367	ID=Msa0205130-mRNA-1:cds;Parent=Msa0205130-mRNA-1
chr2_1	three_prime_UTR	31449077	31449366	31449077	ID=Msa0205130-mRNA-1:three_prime_utr;Parent=Msa0205130-mRNA-1

Gene Sequence

>Msa0205130

ATGTATTGGGTAGATCTCATGTACAAGCATATGTATTCTGTGTCAAGGGCACATTTGGTGCGGGCTGCTGCTGTAAAAAAAGCCATTGAGGGGATTTTGAGCAACTATGATGGTCATTATGTTTCTGATTCAGTTGCTGCAGCAATTGCTTGTGGTGCTGCAGCTACAGAAACATCCGAAGAAAGCGAGGTTCATGGCACTACAATTTTGCCATATTCACCGCAAAGAAATGATGCCATAGGTCTCTCTTTTCAGGGAAAAACAATTGATGCTGTGTACTCCTCTAACAAGTCAAAAAAATTCAGAGATGATGTATTGCAAGAAAACGCAGAAGCTGTCTTTGCAGCATGTGATACTGCTCACAGAAGATGGGCAAAGCTTCTGAGGGATCGTGGTGTTCTTCATGCTAGTTTGAATCCTCTGCAATCTCTGCAATTTCTATACATTGACAGCATCAACGAGGACTTCATTGCAGTTATAGGAGATATTGGTGGAAGATTGGGATACAGCATCGATGGGACAGTGCAGTCATACACCAAGGCCTTTAGTAGATATACAAGGTGA

Protein sequence

>Msa0205130

MYWVDLMYKHMYSVSRAHLVRAAAVKKAIEGILSNYDGHYVSDSVAAAIACGAAATETSEESEVHGTTILPYSPQRNDAIGLSFQGKTIDAVYSSNKSKKFRDDVLQENAEAVFAACDTAHRRWAKLLRDRGVLHASLNPLQSLQFLYIDSINEDFIAVIGDIGGRLGYSIDGTVQSYTKAFSRYTR*