Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305480 | XP_039686112.1 | 78.231 | 294 | 47 | 5 | 16 | 302 | 1 | 284 | 3.01e-157 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305480 | sp|Q9T072|BH025_ARATH | 39.157 | 166 | 96 | 4 | 132 | 296 | 152 | 313 | 2.64e-26 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305480 | G7IMA8 | 77.500 | 280 | 46 | 5 | 30 | 302 | 1 | 270 | 1.96e-145 | 419 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0305480 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017120 | Msa0305480 | 0.814136 | 1.796336e-51 | -8.615850e-47 |
| Msa0110710 | Msa0305480 | 0.803684 | 3.099659e-49 | -8.615850e-47 |
| Msa0143080 | Msa0305480 | 0.813043 | 3.125101e-51 | -8.615850e-47 |
| Msa0157020 | Msa0305480 | 0.817043 | 4.046848e-52 | -8.615850e-47 |
| Msa0185390 | Msa0305480 | 0.801927 | 7.146696e-49 | -8.615850e-47 |
| Msa0194970 | Msa0305480 | 0.806011 | 1.012079e-49 | -8.615850e-47 |
| Msa0236980 | Msa0305480 | 0.806091 | 9.734305e-50 | -8.615850e-47 |
| Msa0259760 | Msa0305480 | 0.996063 | 5.713454e-223 | -8.615850e-47 |
| Msa0305480 | Msa0328210 | 0.806908 | 6.546517e-50 | -8.615850e-47 |
| Msa0305480 | Msa0484690 | 0.813192 | 2.899396e-51 | -8.615850e-47 |
| Msa0305480 | Msa0532840 | 0.804679 | 1.924144e-49 | -8.615850e-47 |
| Msa0305480 | Msa0533010 | 0.803997 | 2.668407e-49 | -8.615850e-47 |
| Msa0305480 | Msa0538260 | 0.819938 | 8.928307e-53 | -8.615850e-47 |
| Msa0305480 | Msa0607500 | 0.818746 | 1.668682e-52 | -8.615850e-47 |
| Msa0305480 | Msa0614230 | 0.812453 | 4.206679e-51 | -8.615850e-47 |
| Msa0305480 | Msa0619980 | 0.800504 | 1.397576e-48 | -8.615850e-47 |
| Msa0305480 | Msa0690560 | 0.850157 | 2.036392e-60 | -8.615850e-47 |
| Msa0305480 | Msa0738850 | 0.811250 | 7.691889e-51 | -8.615850e-47 |
| Msa0305480 | Msa0738860 | 0.836188 | 1.083134e-56 | -8.615850e-47 |
| Msa0305480 | Msa0738870 | 0.817485 | 3.218499e-52 | -8.615850e-47 |
| Msa0305480 | Msa0859560 | 0.801087 | 1.062320e-48 | -8.615850e-47 |
| Msa0305480 | Msa0877420 | 0.813483 | 2.501482e-51 | -8.615850e-47 |
| Msa0305480 | Msa0922540 | 0.803331 | 3.668920e-49 | -8.615850e-47 |
| Msa0305480 | Msa0958020 | 0.817371 | 3.414850e-52 | -8.615850e-47 |
| Msa0305480 | Msa1018790 | 0.814321 | 1.634997e-51 | -8.615850e-47 |
| Msa0305480 | Msa1107440 | 0.815188 | 1.050779e-51 | -8.615850e-47 |
| Msa0305480 | Msa1150970 | 0.820246 | 7.591027e-53 | -8.615850e-47 |
| Msa0305480 | Msa1200920 | 0.806102 | 9.682046e-50 | -8.615850e-47 |
| Msa0305480 | Msa1223840 | 0.814892 | 1.222298e-51 | -8.615850e-47 |
| Msa0305480 | Msa1373510 | 0.800163 | 1.639324e-48 | -8.615850e-47 |
| Msa0305480 | Msa1374440 | 0.815356 | 9.641722e-52 | -8.615850e-47 |
| Msa0305480 | Msa1381130 | 0.801946 | 7.082704e-49 | -8.615850e-47 |
| Msa0305480 | Msa1405770 | 0.803020 | 4.253860e-49 | -8.615850e-47 |
| Msa0305480 | Msa1422270 | 0.820357 | 7.158667e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305480 | MtrunA17_Chr2g0333621 | 42.568 | 296 | 141 | 11 | 16 | 287 | 1 | 291 | 3.78e-57 | 187 |
| Msa0305480 | MtrunA17_Chr2g0333641 | 42.373 | 295 | 139 | 11 | 16 | 287 | 1 | 287 | 5.89e-56 | 183 |
| Msa0305480 | MtrunA17_Chr4g0002801 | 34.579 | 321 | 150 | 9 | 16 | 287 | 1 | 310 | 2.88e-44 | 154 |
| Msa0305480 | MtrunA17_Chr4g0002781 | 40.909 | 220 | 117 | 3 | 79 | 287 | 112 | 329 | 7.89e-43 | 150 |
| Msa0305480 | MtrunA17_Chr8g0336681 | 48.148 | 162 | 76 | 4 | 132 | 287 | 156 | 315 | 2.83e-36 | 133 |
| Msa0305480 | MtrunA17_Chr2g0333611 | 44.048 | 168 | 82 | 5 | 133 | 297 | 46 | 204 | 1.88e-34 | 125 |
| Msa0305480 | MtrunA17_Chr5g0400661 | 41.176 | 187 | 98 | 4 | 132 | 307 | 149 | 334 | 7.05e-32 | 121 |
| Msa0305480 | MtrunA17_Chr5g0400621 | 38.596 | 171 | 101 | 2 | 125 | 295 | 150 | 316 | 7.15e-29 | 113 |
| Msa0305480 | MtrunA17_Chr2g0280161 | 34.807 | 181 | 110 | 4 | 118 | 297 | 166 | 339 | 6.17e-28 | 110 |
| Msa0305480 | MtrunA17_Chr5g0400671 | 34.343 | 198 | 120 | 4 | 91 | 287 | 115 | 303 | 2.38e-27 | 108 |
| Msa0305480 | MtrunA17_Chr4g0049331 | 34.940 | 166 | 104 | 2 | 132 | 297 | 135 | 296 | 1.40e-26 | 106 |
| Msa0305480 | MtrunA17_Chr7g0225901 | 36.095 | 169 | 103 | 2 | 132 | 299 | 88 | 252 | 2.18e-26 | 104 |
| Msa0305480 | MtrunA17_Chr6g0468491 | 32.083 | 240 | 148 | 4 | 72 | 308 | 76 | 303 | 3.41e-25 | 102 |
| Msa0305480 | MtrunA17_Chr2g0333541 | 35.252 | 278 | 137 | 10 | 38 | 297 | 5 | 257 | 4.40e-25 | 101 |
| Msa0305480 | MtrunA17_Chr4g0054561 | 35.135 | 185 | 107 | 4 | 128 | 306 | 151 | 328 | 8.81e-25 | 102 |
| Msa0305480 | MtrunA17_Chr2g0333631 | 43.902 | 164 | 56 | 8 | 30 | 177 | 1 | 144 | 1.11e-24 | 97.4 |
| Msa0305480 | MtrunA17_Chr2g0307131 | 38.217 | 157 | 92 | 3 | 132 | 287 | 179 | 331 | 1.43e-24 | 101 |
| Msa0305480 | MtrunA17_Chr4g0054581 | 33.482 | 224 | 123 | 7 | 96 | 296 | 142 | 362 | 2.07e-24 | 101 |
| Msa0305480 | MtrunA17_Chr7g0249811 | 36.449 | 214 | 112 | 5 | 83 | 287 | 110 | 308 | 2.87e-24 | 100 |
| Msa0305480 | MtrunA17_Chr2g0307141 | 36.943 | 157 | 94 | 3 | 132 | 287 | 183 | 335 | 4.23e-23 | 97.8 |
| Msa0305480 | MtrunA17_Chr5g0400641 | 37.662 | 154 | 93 | 1 | 135 | 288 | 1 | 151 | 1.33e-22 | 92.0 |
| Msa0305480 | MtrunA17_Chr6g0468461 | 30.870 | 230 | 127 | 6 | 72 | 293 | 112 | 317 | 6.56e-22 | 94.4 |
| Msa0305480 | MtrunA17_Chr7g0233441 | 42.537 | 134 | 52 | 3 | 160 | 287 | 62 | 176 | 9.34e-22 | 90.9 |
| Msa0305480 | MtrunA17_Chr4g0033291 | 34.254 | 181 | 101 | 5 | 112 | 287 | 137 | 304 | 2.18e-21 | 92.4 |
| Msa0305480 | MtrunA17_Chr4g0054551 | 35.404 | 161 | 97 | 2 | 128 | 287 | 151 | 305 | 4.86e-21 | 91.7 |
| Msa0305480 | MtrunA17_Chr4g0054621 | 29.864 | 221 | 138 | 5 | 78 | 297 | 122 | 326 | 5.47e-21 | 91.7 |
| Msa0305480 | MtrunA17_Chr4g0002831 | 39.189 | 148 | 71 | 4 | 143 | 287 | 53 | 184 | 1.06e-20 | 88.2 |
| Msa0305480 | MtrunA17_Chr4g0033391 | 34.302 | 172 | 105 | 4 | 116 | 287 | 133 | 296 | 3.20e-20 | 89.4 |
| Msa0305480 | MtrunA17_Chr4g0054571 | 34.043 | 188 | 93 | 4 | 132 | 305 | 150 | 320 | 7.88e-20 | 88.2 |
| Msa0305480 | MtrunA17_Chr4g0002851 | 37.931 | 145 | 68 | 3 | 143 | 287 | 54 | 176 | 8.21e-19 | 82.8 |
| Msa0305480 | MtrunA17_Chr4g0033281 | 33.708 | 178 | 101 | 3 | 118 | 287 | 133 | 301 | 5.02e-16 | 77.4 |
| Msa0305480 | MtrunA17_Chr8g0386921 | 24.766 | 214 | 124 | 6 | 107 | 288 | 377 | 585 | 2.81e-12 | 67.4 |
| Msa0305480 | MtrunA17_Chr1g0185621 | 26.590 | 173 | 103 | 4 | 130 | 288 | 473 | 635 | 1.12e-11 | 65.5 |
| Msa0305480 | MtrunA17_Chr8g0366751 | 25.472 | 212 | 134 | 4 | 105 | 308 | 441 | 636 | 7.53e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0305480 | AT4G37850.2 | 39.157 | 166 | 96 | 4 | 132 | 296 | 152 | 313 | 2.68e-27 | 109 |
| Msa0305480 | AT4G37850.1 | 39.157 | 166 | 96 | 4 | 132 | 296 | 152 | 313 | 2.68e-27 | 109 |
| Msa0305480 | AT2G22760.2 | 37.037 | 162 | 100 | 2 | 132 | 292 | 119 | 279 | 2.26e-26 | 105 |
| Msa0305480 | AT2G22760.1 | 36.747 | 166 | 102 | 3 | 132 | 296 | 119 | 282 | 5.52e-26 | 105 |
| Msa0305480 | AT2G22770.1 | 35.955 | 178 | 101 | 3 | 132 | 297 | 132 | 308 | 2.89e-23 | 98.2 |
| Msa0305480 | AT2G22750.2 | 35.196 | 179 | 90 | 4 | 132 | 297 | 126 | 291 | 1.57e-18 | 84.7 |
| Msa0305480 | AT2G22750.3 | 35.196 | 179 | 90 | 4 | 132 | 297 | 154 | 319 | 1.61e-18 | 85.1 |
| Msa0305480 | AT2G22750.5 | 35.196 | 179 | 90 | 4 | 132 | 297 | 150 | 315 | 1.63e-18 | 85.1 |
| Msa0305480 | AT2G22750.1 | 35.714 | 168 | 83 | 3 | 132 | 286 | 126 | 281 | 2.84e-18 | 84.0 |
| Msa0305480 | AT2G22750.4 | 35.714 | 168 | 83 | 3 | 132 | 286 | 154 | 309 | 2.90e-18 | 84.3 |
| Msa0305480 | AT4G09820.1 | 33.529 | 170 | 77 | 6 | 131 | 294 | 362 | 501 | 1.24e-13 | 71.6 |
| Msa0305480 | AT1G63650.3 | 29.050 | 179 | 111 | 3 | 132 | 295 | 405 | 582 | 1.33e-13 | 71.6 |
| Msa0305480 | AT1G63650.1 | 29.050 | 179 | 111 | 3 | 132 | 295 | 405 | 582 | 1.33e-13 | 71.6 |
| Msa0305480 | AT1G63650.2 | 29.050 | 179 | 111 | 3 | 132 | 295 | 405 | 582 | 1.33e-13 | 71.6 |
| Msa0305480 | AT5G41315.3 | 26.316 | 190 | 119 | 4 | 124 | 293 | 438 | 626 | 4.25e-12 | 67.0 |
| Msa0305480 | AT5G41315.1 | 26.316 | 190 | 119 | 4 | 124 | 293 | 433 | 621 | 4.95e-12 | 67.0 |
| Msa0305480 | AT5G41315.2 | 26.316 | 190 | 119 | 4 | 124 | 293 | 441 | 629 | 5.11e-12 | 67.0 |
Find 55 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAGTTAATGAAAATT+TGG | 0.144317 | 2_3:+63218581 | None:intergenic |
| CTAACTCCTTCACTCGTTTC+TGG | 0.173101 | 2_3:+63218919 | None:intergenic |
| CAATATCTGGCACTCTCTTA+TGG | 0.264252 | 2_3:-63220122 | Msa0305480:CDS |
| TAGAGCTTGCATTATCTCTT+TGG | 0.266677 | 2_3:-63219802 | Msa0305480:CDS |
| ATCAATTGTGAGAAGGAAAA+TGG | 0.286777 | 2_3:-63218723 | Msa0305480:CDS |
| ACAACGTGGTGGTTTGGATT+TGG | 0.302005 | 2_3:+63219743 | None:intergenic |
| CTGGAGTTGCTCCACGTAAT+TGG | 0.302982 | 2_3:+63218938 | None:intergenic |
| TGGCATTCAACACAAAATAT+TGG | 0.325928 | 2_3:-63218703 | Msa0305480:CDS |
| AGAGATCTAATAATTGCTTT+TGG | 0.331987 | 2_3:+63219678 | None:intergenic |
| ATGAATCTTGACAATTATCT+TGG | 0.345786 | 2_3:-63218807 | Msa0305480:CDS |
| AGACTTCCTTTGTGACTTCA+TGG | 0.350365 | 2_3:-63219919 | Msa0305480:CDS |
| GCAATGGCAGCTCCAGCTAC+TGG | 0.359273 | 2_3:+63219891 | None:intergenic |
| GACAAAGCTTCTATCGTTGC+TGG | 0.389114 | 2_3:-63218966 | Msa0305480:CDS |
| CCGTTTGGCAATTCAACTCT+TGG | 0.391384 | 2_3:-63218633 | Msa0305480:CDS |
| CATAAGAGAGTGCCAGATAT+TGG | 0.399635 | 2_3:+63220123 | None:intergenic |
| ATACGAGAGTCACCAATATC+TGG | 0.407485 | 2_3:-63220135 | Msa0305480:CDS |
| ACATCAGGAAGCAATTCATT+TGG | 0.411022 | 2_3:+63218783 | None:intergenic |
| TTCTTATTGAGAAGTATCAT+TGG | 0.433422 | 2_3:+63218867 | None:intergenic |
| AGCAGTCATGGGATAATGTT+TGG | 0.439626 | 2_3:-63220099 | Msa0305480:CDS |
| GACACTTTCACTTTGACATC+AGG | 0.450201 | 2_3:+63218768 | None:intergenic |
| TGTGGGACAACGTGGTGGTT+TGG | 0.461838 | 2_3:+63219737 | None:intergenic |
| AGCACTAGCACATTGCCGTT+TGG | 0.467143 | 2_3:-63218648 | Msa0305480:CDS |
| TTCATGGCACAGCCAGTAGC+TGG | 0.474815 | 2_3:-63219903 | Msa0305480:CDS |
| ACGCAATGGGAGAGAGGAAA+AGG | 0.480162 | 2_3:-63219650 | Msa0305480:CDS |
| ACTCTCTTATGGAGCAGTCA+TGG | 0.487165 | 2_3:-63220111 | Msa0305480:CDS |
| CTCTCTTATGGAGCAGTCAT+GGG | 0.514446 | 2_3:-63220110 | Msa0305480:CDS |
| GAACGCAGTACCGTTTGAAA+AGG | 0.517464 | 2_3:+63220076 | None:intergenic |
| TTGGATTTGGACATCACAGC+TGG | 0.517868 | 2_3:+63219756 | None:intergenic |
| GTGGACGGAGGAAGAAGCTC+CGG | 0.531427 | 2_3:+63219831 | None:intergenic |
| AATGCAAGCTCTAGAGGATG+TGG | 0.535694 | 2_3:+63219812 | None:intergenic |
| AGATCTCTAGATCACGCAAT+GGG | 0.542864 | 2_3:-63219663 | Msa0305480:CDS |
| AAAGGAAGTCTTCATCTTCG+TGG | 0.550705 | 2_3:+63219931 | None:intergenic |
| AAGATTCATTTCACTAGATG+TGG | 0.558723 | 2_3:+63218821 | None:intergenic |
| AGAGATAATGCAAGCTCTAG+AGG | 0.565903 | 2_3:+63219806 | None:intergenic |
| ACGCTCGGTAGCAGCAGCAA+TGG | 0.570572 | 2_3:+63219875 | None:intergenic |
| CCAAGAGTTGAATTGCCAAA+CGG | 0.575048 | 2_3:+63218633 | None:intergenic |
| TGTAGTCTCTGATGAGTCAC+CGG | 0.575944 | 2_3:-63219850 | Msa0305480:CDS |
| ATTAGTACCTTGTTTGAGCG+AGG | 0.577779 | 2_3:+63219582 | None:intergenic |
| AGCTGGTAACAGTATCTTCG+CGG | 0.585382 | 2_3:+63219773 | None:intergenic |
| AAATTTGGTGATGCGAACCT+TGG | 0.588692 | 2_3:+63218596 | None:intergenic |
| ATCAGAGACTACAATACGCT+CGG | 0.591680 | 2_3:+63219860 | None:intergenic |
| CATTTACATCAATTGTGAGA+AGG | 0.601314 | 2_3:-63218730 | Msa0305480:CDS |
| AAACGGCAATGTGCTAGTGC+TGG | 0.603776 | 2_3:+63218650 | None:intergenic |
| TATTATTCCTCGCTCAAACA+AGG | 0.615369 | 2_3:-63219589 | Msa0305480:intron |
| TAGATCACGCAATGGGAGAG+AGG | 0.615416 | 2_3:-63219656 | Msa0305480:CDS |
| TAGATCTCTAGATCACGCAA+TGG | 0.625523 | 2_3:-63219664 | Msa0305480:CDS |
| TGGCATAACTATCATCGCCA+AGG | 0.626059 | 2_3:-63218613 | Msa0305480:CDS |
| GAAGTACAACAAAACAAGAG+AGG | 0.647529 | 2_3:-63218897 | Msa0305480:CDS |
| TGCTGGCGCAACCAATTACG+TGG | 0.650808 | 2_3:-63218949 | Msa0305480:CDS |
| GACTTCTGAGAATCGAAACA+TGG | 0.657951 | 2_3:-63219703 | Msa0305480:CDS |
| TGATGTCAAAGTGAAAGTGT+CGG | 0.659461 | 2_3:-63218766 | Msa0305480:CDS |
| GCAACTCCAGAAACGAGTGA+AGG | 0.675689 | 2_3:-63218925 | Msa0305480:CDS |
| CAAGCTCTAGAGGATGTGGA+CGG | 0.686043 | 2_3:+63219816 | None:intergenic |
| GCTCTAGAGGATGTGGACGG+AGG | 0.694196 | 2_3:+63219819 | None:intergenic |
| GCTGTGCCATGAAGTCACAA+AGG | 0.700598 | 2_3:+63219913 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTAAATACATTAATAATTT+GGG | + | chr2_3:63219684-63219703 | None:intergenic | 10.0% |
| !! | TTGTAAATACATTAATAATT+TGG | + | chr2_3:63219685-63219704 | None:intergenic | 10.0% |
| !! | TGTAAATACATTAATAATTT+GGG | + | chr2_3:63219684-63219703 | None:intergenic | 10.0% |
| !! | TTGTAAATACATTAATAATT+TGG | + | chr2_3:63219685-63219704 | None:intergenic | 10.0% |
| !!! | GTTTAATTCAAACATTTTAT+AGG | - | chr2_3:63218702-63218721 | Msa0305480:CDS | 15.0% |
| !!! | ATTATTTTTTTGATAAGCAA+AGG | + | chr2_3:63219164-63219183 | None:intergenic | 15.0% |
| !!! | CCATTTTAAAACATTTTTTA+AGG | + | chr2_3:63219536-63219555 | None:intergenic | 15.0% |
| !!! | CCTTAAAAAATGTTTTAAAA+TGG | - | chr2_3:63219533-63219552 | Msa0305480:intron | 15.0% |
| !! | TTCAATAGTTAATGAAAATT+TGG | + | chr2_3:63220109-63220128 | None:intergenic | 15.0% |
| !!! | TTGAAATGAATATGTTTTTA+AGG | - | chr2_3:63220124-63220143 | Msa0305480:CDS | 15.0% |
| !!! | TGAAATGAATATGTTTTTAA+GGG | - | chr2_3:63220125-63220144 | Msa0305480:CDS | 15.0% |
| !!! | GTTTAATTCAAACATTTTAT+AGG | - | chr2_3:63218702-63218721 | Msa0305480:CDS | 15.0% |
| !!! | ATTATTTTTTTGATAAGCAA+AGG | + | chr2_3:63219164-63219183 | None:intergenic | 15.0% |
| !!! | CCATTTTAAAACATTTTTTA+AGG | + | chr2_3:63219536-63219555 | None:intergenic | 15.0% |
| !!! | CCTTAAAAAATGTTTTAAAA+TGG | - | chr2_3:63219533-63219552 | Msa0305480:intron | 15.0% |
| !! | TTCAATAGTTAATGAAAATT+TGG | + | chr2_3:63220109-63220128 | None:intergenic | 15.0% |
| !!! | TTGAAATGAATATGTTTTTA+AGG | - | chr2_3:63220124-63220143 | Msa0305480:CDS | 15.0% |
| !!! | TGAAATGAATATGTTTTTAA+GGG | - | chr2_3:63220125-63220144 | Msa0305480:CDS | 15.0% |
| !!! | TTCAAACATTTTATAGGAAA+TGG | - | chr2_3:63218708-63218727 | Msa0305480:CDS | 20.0% |
| !! | TTATTGTGAAGTTTGTAATT+AGG | - | chr2_3:63219233-63219252 | Msa0305480:intron | 20.0% |
| !! | TAGAAAATAAAGACCAATAT+AGG | - | chr2_3:63219510-63219529 | Msa0305480:intron | 20.0% |
| !!! | TTCAAACATTTTATAGGAAA+TGG | - | chr2_3:63218708-63218727 | Msa0305480:CDS | 20.0% |
| !! | TTATTGTGAAGTTTGTAATT+AGG | - | chr2_3:63219233-63219252 | Msa0305480:intron | 20.0% |
| !! | TAGAAAATAAAGACCAATAT+AGG | - | chr2_3:63219510-63219529 | Msa0305480:intron | 20.0% |
| ! | ATATTTGTATCAATTGATGC+TGG | + | chr2_3:63218636-63218655 | None:intergenic | 25.0% |
| !! | AGAGATCTAATAATTGCTTT+TGG | + | chr2_3:63219012-63219031 | None:intergenic | 25.0% |
| ! | TTAACATAATACCATTCTTC+AGG | - | chr2_3:63219324-63219343 | Msa0305480:intron | 25.0% |
| ! | TAACATAATACCATTCTTCA+GGG | - | chr2_3:63219325-63219344 | Msa0305480:intron | 25.0% |
| !!! | ACATTTTTTAAGGCCTATAT+TGG | + | chr2_3:63219526-63219545 | None:intergenic | 25.0% |
| !! | TAATTTGGGATGTCTAATAT+CGG | + | chr2_3:63219670-63219689 | None:intergenic | 25.0% |
| !!! | TTCTTATTGAGAAGTATCAT+TGG | + | chr2_3:63219823-63219842 | None:intergenic | 25.0% |
| ! | CTCAATAAGAAAAATTCTTG+TGG | - | chr2_3:63219832-63219851 | Msa0305480:CDS | 25.0% |
| ! | ATGAATCTTGACAATTATCT+TGG | - | chr2_3:63219880-63219899 | Msa0305480:CDS | 25.0% |
| ! | ATATTTGTATCAATTGATGC+TGG | + | chr2_3:63218636-63218655 | None:intergenic | 25.0% |
| !! | AGAGATCTAATAATTGCTTT+TGG | + | chr2_3:63219012-63219031 | None:intergenic | 25.0% |
| ! | TTAACATAATACCATTCTTC+AGG | - | chr2_3:63219324-63219343 | Msa0305480:intron | 25.0% |
| ! | TAACATAATACCATTCTTCA+GGG | - | chr2_3:63219325-63219344 | Msa0305480:intron | 25.0% |
| !!! | ACATTTTTTAAGGCCTATAT+TGG | + | chr2_3:63219526-63219545 | None:intergenic | 25.0% |
| !! | TAATTTGGGATGTCTAATAT+CGG | + | chr2_3:63219670-63219689 | None:intergenic | 25.0% |
| !!! | TTCTTATTGAGAAGTATCAT+TGG | + | chr2_3:63219823-63219842 | None:intergenic | 25.0% |
| ! | CTCAATAAGAAAAATTCTTG+TGG | - | chr2_3:63219832-63219851 | Msa0305480:CDS | 25.0% |
| ! | ATGAATCTTGACAATTATCT+TGG | - | chr2_3:63219880-63219899 | Msa0305480:CDS | 25.0% |
| !! | TAATGTTTGGCCTTTTCAAA+CGG | - | chr2_3:63218601-63218620 | Msa0305480:CDS | 30.0% |
| ! | CATTTTATAGGAAATGGATG+TGG | - | chr2_3:63218714-63218733 | Msa0305480:CDS | 30.0% |
| !!! | GAAGTCATCATCTTTTTTGT+GGG | + | chr2_3:63218970-63218989 | None:intergenic | 30.0% |
| !!! | AGAAGTCATCATCTTTTTTG+TGG | + | chr2_3:63218971-63218990 | None:intergenic | 30.0% |
| !!! | TTTTTTGATAAGCAAAGGCA+AGG | + | chr2_3:63219159-63219178 | None:intergenic | 30.0% |
| AAAACATCTCTTCAAATCGT+TGG | - | chr2_3:63219285-63219304 | Msa0305480:intron | 30.0% | |
| GTATCAACAACAAATGTTGA+GGG | + | chr2_3:63219376-63219395 | None:intergenic | 30.0% | |
| AGTAGAATCTACCTTTAAAC+CGG | - | chr2_3:63219643-63219662 | Msa0305480:CDS | 30.0% | |
| AAGATTCATTTCACTAGATG+TGG | + | chr2_3:63219869-63219888 | None:intergenic | 30.0% | |
| CATTTACATCAATTGTGAGA+AGG | - | chr2_3:63219957-63219976 | Msa0305480:CDS | 30.0% | |
| ATCAATTGTGAGAAGGAAAA+TGG | - | chr2_3:63219964-63219983 | Msa0305480:CDS | 30.0% | |
| TGGCATTCAACACAAAATAT+TGG | - | chr2_3:63219984-63220003 | Msa0305480:intron | 30.0% | |
| !! | TAATGTTTGGCCTTTTCAAA+CGG | - | chr2_3:63218601-63218620 | Msa0305480:CDS | 30.0% |
| ! | CATTTTATAGGAAATGGATG+TGG | - | chr2_3:63218714-63218733 | Msa0305480:CDS | 30.0% |
| !!! | GAAGTCATCATCTTTTTTGT+GGG | + | chr2_3:63218970-63218989 | None:intergenic | 30.0% |
| !!! | AGAAGTCATCATCTTTTTTG+TGG | + | chr2_3:63218971-63218990 | None:intergenic | 30.0% |
| !!! | TTTTTTGATAAGCAAAGGCA+AGG | + | chr2_3:63219159-63219178 | None:intergenic | 30.0% |
| AAAACATCTCTTCAAATCGT+TGG | - | chr2_3:63219285-63219304 | Msa0305480:intron | 30.0% | |
| GTATCAACAACAAATGTTGA+GGG | + | chr2_3:63219376-63219395 | None:intergenic | 30.0% | |
| AGTAGAATCTACCTTTAAAC+CGG | - | chr2_3:63219643-63219662 | Msa0305480:CDS | 30.0% | |
| AAGATTCATTTCACTAGATG+TGG | + | chr2_3:63219869-63219888 | None:intergenic | 30.0% | |
| CATTTACATCAATTGTGAGA+AGG | - | chr2_3:63219957-63219976 | Msa0305480:CDS | 30.0% | |
| ATCAATTGTGAGAAGGAAAA+TGG | - | chr2_3:63219964-63219983 | Msa0305480:CDS | 30.0% | |
| TGGCATTCAACACAAAATAT+TGG | - | chr2_3:63219984-63220003 | Msa0305480:intron | 30.0% | |
| TAGAGCTTGCATTATCTCTT+TGG | - | chr2_3:63218885-63218904 | Msa0305480:CDS | 35.0% | |
| TATTATTCCTCGCTCAAACA+AGG | - | chr2_3:63219098-63219117 | Msa0305480:intron | 35.0% | |
| CATATTCAAACCCTGAAGAA+TGG | + | chr2_3:63219338-63219357 | None:intergenic | 35.0% | |
| GGTATCAACAACAAATGTTG+AGG | + | chr2_3:63219377-63219396 | None:intergenic | 35.0% | |
| !! | AATGAGTGTTGAGTTTGGAA+GGG | + | chr2_3:63219419-63219438 | None:intergenic | 35.0% |
| GAAGTACAACAAAACAAGAG+AGG | - | chr2_3:63219790-63219809 | Msa0305480:CDS | 35.0% | |
| ACATCAGGAAGCAATTCATT+TGG | + | chr2_3:63219907-63219926 | None:intergenic | 35.0% | |
| ! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_3:63219921-63219940 | Msa0305480:CDS | 35.0% |
| TAGAGCTTGCATTATCTCTT+TGG | - | chr2_3:63218885-63218904 | Msa0305480:CDS | 35.0% | |
| TATTATTCCTCGCTCAAACA+AGG | - | chr2_3:63219098-63219117 | Msa0305480:intron | 35.0% | |
| CATATTCAAACCCTGAAGAA+TGG | + | chr2_3:63219338-63219357 | None:intergenic | 35.0% | |
| GGTATCAACAACAAATGTTG+AGG | + | chr2_3:63219377-63219396 | None:intergenic | 35.0% | |
| !! | AATGAGTGTTGAGTTTGGAA+GGG | + | chr2_3:63219419-63219438 | None:intergenic | 35.0% |
| GAAGTACAACAAAACAAGAG+AGG | - | chr2_3:63219790-63219809 | Msa0305480:CDS | 35.0% | |
| ACATCAGGAAGCAATTCATT+TGG | + | chr2_3:63219907-63219926 | None:intergenic | 35.0% | |
| ! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_3:63219921-63219940 | Msa0305480:CDS | 35.0% |
| ATACGAGAGTCACCAATATC+TGG | - | chr2_3:63218552-63218571 | Msa0305480:CDS | 40.0% | |
| !! | CATAAGAGAGTGCCAGATAT+TGG | + | chr2_3:63218567-63218586 | None:intergenic | 40.0% |
| CAATATCTGGCACTCTCTTA+TGG | - | chr2_3:63218565-63218584 | Msa0305480:CDS | 40.0% | |
| AGCAGTCATGGGATAATGTT+TGG | - | chr2_3:63218588-63218607 | Msa0305480:CDS | 40.0% | |
| AAAGGAAGTCTTCATCTTCG+TGG | + | chr2_3:63218759-63218778 | None:intergenic | 40.0% | |
| AGACTTCCTTTGTGACTTCA+TGG | - | chr2_3:63218768-63218787 | Msa0305480:CDS | 40.0% | |
| ATCAGAGACTACAATACGCT+CGG | + | chr2_3:63218830-63218849 | None:intergenic | 40.0% | |
| ! | AGAGATAATGCAAGCTCTAG+AGG | + | chr2_3:63218884-63218903 | None:intergenic | 40.0% |
| !!! | ATCTTTTTTGTGGGACAACG+TGG | + | chr2_3:63218961-63218980 | None:intergenic | 40.0% |
| ! | GACTTCTGAGAATCGAAACA+TGG | - | chr2_3:63218984-63219003 | Msa0305480:intron | 40.0% |
| TAGATCTCTAGATCACGCAA+TGG | - | chr2_3:63219023-63219042 | Msa0305480:intron | 40.0% | |
| AGATCTCTAGATCACGCAAT+GGG | - | chr2_3:63219024-63219043 | Msa0305480:intron | 40.0% | |
| ! | ATTAGTACCTTGTTTGAGCG+AGG | + | chr2_3:63219108-63219127 | None:intergenic | 40.0% |
| !! | CAATGAGTGTTGAGTTTGGA+AGG | + | chr2_3:63219420-63219439 | None:intergenic | 40.0% |
| !! | CTTGCAATGAGTGTTGAGTT+TGG | + | chr2_3:63219424-63219443 | None:intergenic | 40.0% |
| CTAATATCGGTCCGGTTTAA+AGG | + | chr2_3:63219657-63219676 | None:intergenic | 40.0% | |
| GACACTTTCACTTTGACATC+AGG | + | chr2_3:63219922-63219941 | None:intergenic | 40.0% | |
| CCAAGAGTTGAATTGCCAAA+CGG | + | chr2_3:63220057-63220076 | None:intergenic | 40.0% | |
| !! | AAATTTGGTGATGCGAACCT+TGG | + | chr2_3:63220094-63220113 | None:intergenic | 40.0% |
| ATACGAGAGTCACCAATATC+TGG | - | chr2_3:63218552-63218571 | Msa0305480:CDS | 40.0% | |
| !! | CATAAGAGAGTGCCAGATAT+TGG | + | chr2_3:63218567-63218586 | None:intergenic | 40.0% |
| CAATATCTGGCACTCTCTTA+TGG | - | chr2_3:63218565-63218584 | Msa0305480:CDS | 40.0% | |
| AGCAGTCATGGGATAATGTT+TGG | - | chr2_3:63218588-63218607 | Msa0305480:CDS | 40.0% | |
| AAAGGAAGTCTTCATCTTCG+TGG | + | chr2_3:63218759-63218778 | None:intergenic | 40.0% | |
| AGACTTCCTTTGTGACTTCA+TGG | - | chr2_3:63218768-63218787 | Msa0305480:CDS | 40.0% | |
| ATCAGAGACTACAATACGCT+CGG | + | chr2_3:63218830-63218849 | None:intergenic | 40.0% | |
| ! | AGAGATAATGCAAGCTCTAG+AGG | + | chr2_3:63218884-63218903 | None:intergenic | 40.0% |
| !!! | ATCTTTTTTGTGGGACAACG+TGG | + | chr2_3:63218961-63218980 | None:intergenic | 40.0% |
| ! | GACTTCTGAGAATCGAAACA+TGG | - | chr2_3:63218984-63219003 | Msa0305480:intron | 40.0% |
| TAGATCTCTAGATCACGCAA+TGG | - | chr2_3:63219023-63219042 | Msa0305480:intron | 40.0% | |
| AGATCTCTAGATCACGCAAT+GGG | - | chr2_3:63219024-63219043 | Msa0305480:intron | 40.0% | |
| ! | ATTAGTACCTTGTTTGAGCG+AGG | + | chr2_3:63219108-63219127 | None:intergenic | 40.0% |
| !! | CAATGAGTGTTGAGTTTGGA+AGG | + | chr2_3:63219420-63219439 | None:intergenic | 40.0% |
| !! | CTTGCAATGAGTGTTGAGTT+TGG | + | chr2_3:63219424-63219443 | None:intergenic | 40.0% |
| CTAATATCGGTCCGGTTTAA+AGG | + | chr2_3:63219657-63219676 | None:intergenic | 40.0% | |
| GACACTTTCACTTTGACATC+AGG | + | chr2_3:63219922-63219941 | None:intergenic | 40.0% | |
| CCAAGAGTTGAATTGCCAAA+CGG | + | chr2_3:63220057-63220076 | None:intergenic | 40.0% | |
| !! | AAATTTGGTGATGCGAACCT+TGG | + | chr2_3:63220094-63220113 | None:intergenic | 40.0% |
| ACTCTCTTATGGAGCAGTCA+TGG | - | chr2_3:63218576-63218595 | Msa0305480:CDS | 45.0% | |
| CTCTCTTATGGAGCAGTCAT+GGG | - | chr2_3:63218577-63218596 | Msa0305480:CDS | 45.0% | |
| GAACGCAGTACCGTTTGAAA+AGG | + | chr2_3:63218614-63218633 | None:intergenic | 45.0% | |
| TGTAGTCTCTGATGAGTCAC+CGG | - | chr2_3:63218837-63218856 | Msa0305480:CDS | 45.0% | |
| !! | AATGCAAGCTCTAGAGGATG+TGG | + | chr2_3:63218878-63218897 | None:intergenic | 45.0% |
| AGCTGGTAACAGTATCTTCG+CGG | + | chr2_3:63218917-63218936 | None:intergenic | 45.0% | |
| TTGGATTTGGACATCACAGC+TGG | + | chr2_3:63218934-63218953 | None:intergenic | 45.0% | |
| ! | ACAACGTGGTGGTTTGGATT+TGG | + | chr2_3:63218947-63218966 | None:intergenic | 45.0% |
| !!! | TTTTTTGTGGGACAACGTGG+TGG | + | chr2_3:63218958-63218977 | None:intergenic | 45.0% |
| AAGGGAAGAATGAGGAGGTT+TGG | + | chr2_3:63219401-63219420 | None:intergenic | 45.0% | |
| TTTGGAAGGGAAGAATGAGG+AGG | + | chr2_3:63219406-63219425 | None:intergenic | 45.0% | |
| GAGTTTGGAAGGGAAGAATG+AGG | + | chr2_3:63219409-63219428 | None:intergenic | 45.0% | |
| TGGGATGTCTAATATCGGTC+CGG | + | chr2_3:63219665-63219684 | None:intergenic | 45.0% | |
| GACAAAGCTTCTATCGTTGC+TGG | - | chr2_3:63219721-63219740 | Msa0305480:CDS | 45.0% | |
| CTAACTCCTTCACTCGTTTC+TGG | + | chr2_3:63219771-63219790 | None:intergenic | 45.0% | |
| CCGTTTGGCAATTCAACTCT+TGG | - | chr2_3:63220054-63220073 | Msa0305480:intron | 45.0% | |
| TGGCATAACTATCATCGCCA+AGG | - | chr2_3:63220074-63220093 | Msa0305480:intron | 45.0% | |
| ACTCTCTTATGGAGCAGTCA+TGG | - | chr2_3:63218576-63218595 | Msa0305480:CDS | 45.0% | |
| CTCTCTTATGGAGCAGTCAT+GGG | - | chr2_3:63218577-63218596 | Msa0305480:CDS | 45.0% | |
| GAACGCAGTACCGTTTGAAA+AGG | + | chr2_3:63218614-63218633 | None:intergenic | 45.0% | |
| TGTAGTCTCTGATGAGTCAC+CGG | - | chr2_3:63218837-63218856 | Msa0305480:CDS | 45.0% | |
| !! | AATGCAAGCTCTAGAGGATG+TGG | + | chr2_3:63218878-63218897 | None:intergenic | 45.0% |
| AGCTGGTAACAGTATCTTCG+CGG | + | chr2_3:63218917-63218936 | None:intergenic | 45.0% | |
| TTGGATTTGGACATCACAGC+TGG | + | chr2_3:63218934-63218953 | None:intergenic | 45.0% | |
| ! | ACAACGTGGTGGTTTGGATT+TGG | + | chr2_3:63218947-63218966 | None:intergenic | 45.0% |
| !!! | TTTTTTGTGGGACAACGTGG+TGG | + | chr2_3:63218958-63218977 | None:intergenic | 45.0% |
| AAGGGAAGAATGAGGAGGTT+TGG | + | chr2_3:63219401-63219420 | None:intergenic | 45.0% | |
| TTTGGAAGGGAAGAATGAGG+AGG | + | chr2_3:63219406-63219425 | None:intergenic | 45.0% | |
| GAGTTTGGAAGGGAAGAATG+AGG | + | chr2_3:63219409-63219428 | None:intergenic | 45.0% | |
| TGGGATGTCTAATATCGGTC+CGG | + | chr2_3:63219665-63219684 | None:intergenic | 45.0% | |
| GACAAAGCTTCTATCGTTGC+TGG | - | chr2_3:63219721-63219740 | Msa0305480:CDS | 45.0% | |
| CTAACTCCTTCACTCGTTTC+TGG | + | chr2_3:63219771-63219790 | None:intergenic | 45.0% | |
| CCGTTTGGCAATTCAACTCT+TGG | - | chr2_3:63220054-63220073 | Msa0305480:intron | 45.0% | |
| TGGCATAACTATCATCGCCA+AGG | - | chr2_3:63220074-63220093 | Msa0305480:intron | 45.0% | |
| GCTGTGCCATGAAGTCACAA+AGG | + | chr2_3:63218777-63218796 | None:intergenic | 50.0% | |
| !! | CAAGCTCTAGAGGATGTGGA+CGG | + | chr2_3:63218874-63218893 | None:intergenic | 50.0% |
| TAGATCACGCAATGGGAGAG+AGG | - | chr2_3:63219031-63219050 | Msa0305480:intron | 50.0% | |
| ACGCAATGGGAGAGAGGAAA+AGG | - | chr2_3:63219037-63219056 | Msa0305480:intron | 50.0% | |
| GGAAGAATGAGGAGGTTTGG+TGG | + | chr2_3:63219398-63219417 | None:intergenic | 50.0% | |
| CTGGAGTTGCTCCACGTAAT+TGG | + | chr2_3:63219752-63219771 | None:intergenic | 50.0% | |
| GCAACTCCAGAAACGAGTGA+AGG | - | chr2_3:63219762-63219781 | Msa0305480:CDS | 50.0% | |
| AAACGGCAATGTGCTAGTGC+TGG | + | chr2_3:63220040-63220059 | None:intergenic | 50.0% | |
| AGCACTAGCACATTGCCGTT+TGG | - | chr2_3:63220039-63220058 | Msa0305480:intron | 50.0% | |
| GCTGTGCCATGAAGTCACAA+AGG | + | chr2_3:63218777-63218796 | None:intergenic | 50.0% | |
| !! | CAAGCTCTAGAGGATGTGGA+CGG | + | chr2_3:63218874-63218893 | None:intergenic | 50.0% |
| TAGATCACGCAATGGGAGAG+AGG | - | chr2_3:63219031-63219050 | Msa0305480:intron | 50.0% | |
| ACGCAATGGGAGAGAGGAAA+AGG | - | chr2_3:63219037-63219056 | Msa0305480:intron | 50.0% | |
| GGAAGAATGAGGAGGTTTGG+TGG | + | chr2_3:63219398-63219417 | None:intergenic | 50.0% | |
| CTGGAGTTGCTCCACGTAAT+TGG | + | chr2_3:63219752-63219771 | None:intergenic | 50.0% | |
| GCAACTCCAGAAACGAGTGA+AGG | - | chr2_3:63219762-63219781 | Msa0305480:CDS | 50.0% | |
| AAACGGCAATGTGCTAGTGC+TGG | + | chr2_3:63220040-63220059 | None:intergenic | 50.0% | |
| AGCACTAGCACATTGCCGTT+TGG | - | chr2_3:63220039-63220058 | Msa0305480:intron | 50.0% | |
| TTCATGGCACAGCCAGTAGC+TGG | - | chr2_3:63218784-63218803 | Msa0305480:CDS | 55.0% | |
| TGTGGGACAACGTGGTGGTT+TGG | + | chr2_3:63218953-63218972 | None:intergenic | 55.0% | |
| TGCTGGCGCAACCAATTACG+TGG | - | chr2_3:63219738-63219757 | Msa0305480:CDS | 55.0% | |
| TTCATGGCACAGCCAGTAGC+TGG | - | chr2_3:63218784-63218803 | Msa0305480:CDS | 55.0% | |
| TGTGGGACAACGTGGTGGTT+TGG | + | chr2_3:63218953-63218972 | None:intergenic | 55.0% | |
| TGCTGGCGCAACCAATTACG+TGG | - | chr2_3:63219738-63219757 | Msa0305480:CDS | 55.0% | |
| GCAATGGCAGCTCCAGCTAC+TGG | + | chr2_3:63218799-63218818 | None:intergenic | 60.0% | |
| ACGCTCGGTAGCAGCAGCAA+TGG | + | chr2_3:63218815-63218834 | None:intergenic | 60.0% | |
| GTGGACGGAGGAAGAAGCTC+CGG | + | chr2_3:63218859-63218878 | None:intergenic | 60.0% | |
| !! | GCTCTAGAGGATGTGGACGG+AGG | + | chr2_3:63218871-63218890 | None:intergenic | 60.0% |
| GCAATGGCAGCTCCAGCTAC+TGG | + | chr2_3:63218799-63218818 | None:intergenic | 60.0% | |
| ACGCTCGGTAGCAGCAGCAA+TGG | + | chr2_3:63218815-63218834 | None:intergenic | 60.0% | |
| GTGGACGGAGGAAGAAGCTC+CGG | + | chr2_3:63218859-63218878 | None:intergenic | 60.0% | |
| !! | GCTCTAGAGGATGTGGACGG+AGG | + | chr2_3:63218871-63218890 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 63218539 | 63220170 | 63218539 | ID=Msa0305480;Name=Msa0305480 |
| chr2_3 | mRNA | 63218539 | 63220170 | 63218539 | ID=Msa0305480-mRNA-1;Parent=Msa0305480;Name=Msa0305480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.33|1|1|1|3|0|310 |
| chr2_3 | exon | 63220087 | 63220170 | 63220087 | ID=Msa0305480-mRNA-1:exon:21126;Parent=Msa0305480-mRNA-1 |
| chr2_3 | exon | 63219590 | 63219985 | 63219590 | ID=Msa0305480-mRNA-1:exon:21125;Parent=Msa0305480-mRNA-1 |
| chr2_3 | exon | 63218539 | 63218991 | 63218539 | ID=Msa0305480-mRNA-1:exon:21124;Parent=Msa0305480-mRNA-1 |
| chr2_3 | CDS | 63220087 | 63220170 | 63220087 | ID=Msa0305480-mRNA-1:cds;Parent=Msa0305480-mRNA-1 |
| chr2_3 | CDS | 63219590 | 63219985 | 63219590 | ID=Msa0305480-mRNA-1:cds;Parent=Msa0305480-mRNA-1 |
| chr2_3 | CDS | 63218539 | 63218991 | 63218539 | ID=Msa0305480-mRNA-1:cds;Parent=Msa0305480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
