Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859560 | XP_003616815.1 | 51.852 | 108 | 44 | 2 | 1 | 101 | 1 | 107 | 3.76e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859560 | sp|P23137|GRP1_TOBAC | 40.909 | 110 | 49 | 4 | 5 | 102 | 4 | 109 | 4.71e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859560 | G7K7E3 | 51.852 | 108 | 44 | 2 | 1 | 101 | 1 | 107 | 1.80e-16 | 80.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0859560 | 0.817704 | 2.872919e-52 | -8.615850e-47 |
| Msa0050730 | Msa0859560 | 0.807495 | 4.916648e-50 | -8.615850e-47 |
| Msa0060600 | Msa0859560 | 0.820694 | 5.992125e-53 | -8.615850e-47 |
| Msa0105340 | Msa0859560 | 0.819457 | 1.149794e-52 | -8.615850e-47 |
| Msa0607500 | Msa0859560 | 0.823808 | 1.134500e-53 | -8.615850e-47 |
| Msa0619980 | Msa0859560 | 0.814613 | 1.409327e-51 | -8.615850e-47 |
| Msa0622340 | Msa0859560 | 0.814223 | 1.718589e-51 | -8.615850e-47 |
| Msa0690560 | Msa0859560 | 0.830023 | 3.707842e-55 | -8.615850e-47 |
| Msa0694250 | Msa0859560 | 0.801314 | 9.545319e-49 | -8.615850e-47 |
| Msa0706370 | Msa0859560 | 0.808275 | 3.354772e-50 | -8.615850e-47 |
| Msa0738850 | Msa0859560 | 0.831613 | 1.511874e-55 | -8.615850e-47 |
| Msa0738860 | Msa0859560 | 0.822760 | 1.993809e-53 | -8.615850e-47 |
| Msa0783370 | Msa0859560 | 0.830868 | 2.304212e-55 | -8.615850e-47 |
| Msa0799210 | Msa0859560 | 0.805079 | 1.587256e-49 | -8.615850e-47 |
| Msa0151690 | Msa0859560 | 0.810255 | 1.262080e-50 | -8.615850e-47 |
| Msa0199710 | Msa0859560 | 0.816978 | 4.185538e-52 | -8.615850e-47 |
| Msa0222660 | Msa0859560 | 0.802218 | 6.226625e-49 | -8.615850e-47 |
| Msa0236980 | Msa0859560 | 0.807419 | 5.102096e-50 | -8.615850e-47 |
| Msa0408640 | Msa0859560 | 0.800283 | 1.549822e-48 | -8.615850e-47 |
| Msa0420540 | Msa0859560 | 0.808482 | 3.030397e-50 | -8.615850e-47 |
| Msa0436460 | Msa0859560 | 0.823628 | 1.250416e-53 | -8.615850e-47 |
| Msa0449820 | Msa0859560 | 0.803742 | 3.015079e-49 | -8.615850e-47 |
| Msa0449830 | Msa0859560 | 0.802820 | 4.679087e-49 | -8.615850e-47 |
| Msa0259760 | Msa0859560 | 0.804470 | 2.127335e-49 | -8.615850e-47 |
| Msa0264050 | Msa0859560 | 0.800403 | 1.465081e-48 | -8.615850e-47 |
| Msa0301980 | Msa0859560 | 0.804856 | 1.767446e-49 | -8.615850e-47 |
| Msa0305480 | Msa0859560 | 0.801087 | 1.062320e-48 | -8.615850e-47 |
| Msa0328210 | Msa0859560 | 0.809099 | 2.237218e-50 | -8.615850e-47 |
| Msa0344640 | Msa0859560 | 0.815111 | 1.093002e-51 | -8.615850e-47 |
| Msa0484690 | Msa0859560 | 0.829879 | 4.021365e-55 | -8.615850e-47 |
| Msa0553150 | Msa0859560 | 0.807502 | 4.898933e-50 | -8.615850e-47 |
| Msa0859530 | Msa0859560 | 0.804930 | 1.705514e-49 | -8.615850e-47 |
| Msa0859560 | Msa0871890 | 0.805229 | 1.476222e-49 | -8.615850e-47 |
| Msa0859560 | Msa0905260 | 0.805337 | 1.401314e-49 | -8.615850e-47 |
| Msa0859560 | Msa0922540 | 0.821796 | 3.336531e-53 | -8.615850e-47 |
| Msa0859560 | Msa0942730 | 0.811418 | 7.070988e-51 | -8.615850e-47 |
| Msa0859560 | Msa0958020 | 0.822831 | 1.919244e-53 | -8.615850e-47 |
| Msa0859560 | Msa0996080 | 0.813279 | 2.773289e-51 | -8.615850e-47 |
| Msa0859560 | Msa0996090 | 0.808862 | 2.514232e-50 | -8.615850e-47 |
| Msa0859560 | Msa1002040 | 0.802538 | 5.349734e-49 | -8.615850e-47 |
| Msa0859560 | Msa1100490 | 0.803009 | 4.277161e-49 | -8.615850e-47 |
| Msa0859560 | Msa1106810 | 0.810792 | 9.664997e-51 | -8.615850e-47 |
| Msa0859560 | Msa1116150 | 0.803918 | 2.771137e-49 | -8.615850e-47 |
| Msa0859560 | Msa1218650 | 0.822294 | 2.558556e-53 | -8.615850e-47 |
| Msa0859560 | Msa1223160 | -0.801366 | 9.316141e-49 | -8.615850e-47 |
| Msa0859560 | Msa1235630 | 0.814666 | 1.371974e-51 | -8.615850e-47 |
| Msa0859560 | Msa1237030 | 0.810111 | 1.356129e-50 | -8.615850e-47 |
| Msa0859560 | Msa1254190 | 0.802404 | 5.702194e-49 | -8.615850e-47 |
| Msa0859560 | Msa1315870 | 0.800881 | 1.170328e-48 | -8.615850e-47 |
| Msa0859560 | Msa1374440 | 0.832583 | 8.703202e-56 | -8.615850e-47 |
| Msa0859560 | Msa1379990 | 0.814253 | 1.692936e-51 | -8.615850e-47 |
| Msa0859560 | Msa1419110 | 0.818939 | 1.508695e-52 | -8.615850e-47 |
| Msa0859560 | Msa1422270 | 0.827685 | 1.365080e-54 | -8.615850e-47 |
| Msa0859560 | Msa1439230 | 0.828340 | 9.493227e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859560 | MtrunA17_Chr5g0438511 | 51.852 | 108 | 44 | 2 | 1 | 101 | 1 | 107 | 3.46e-20 | 80.1 |
| Msa0859560 | MtrunA17_Chr5g0438501 | 76.000 | 50 | 12 | 0 | 1 | 50 | 1 | 50 | 3.90e-19 | 77.0 |
| Msa0859560 | MtrunA17_Chr5g0438411 | 48.507 | 134 | 36 | 3 | 1 | 102 | 1 | 133 | 6.57e-19 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATATAGCTCACCTGTTT+TGG | 0.281946 | 5_4:-57908437 | None:intergenic |
| TTGTTCTTCTTATTTCATCT+AGG | 0.334276 | 5_4:+57908377 | Msa0859560:CDS |
| TAAGAAGAACAATAGCAAAT+AGG | 0.365064 | 5_4:-57908366 | None:intergenic |
| TGTTCTTCTTATTTCATCTA+GGG | 0.409997 | 5_4:+57908378 | Msa0859560:CDS |
| ATACAAATCGATATTTCAAA+AGG | 0.428471 | 5_4:-57908287 | None:intergenic |
| GGCAATGGTTGTTGCAGTCC+TGG | 0.429599 | 5_4:+57910655 | Msa0859560:CDS |
| AGGATCATAGACTCCATCTT+TGG | 0.433604 | 5_4:-57910599 | None:intergenic |
| GAACAATAGCAAATAGGCCT+TGG | 0.437760 | 5_4:-57908360 | None:intergenic |
| ATTCATGCAATATATTACTA+AGG | 0.453267 | 5_4:-57910802 | None:intergenic |
| ACTTCCTCTAATACCAAAAC+AGG | 0.456252 | 5_4:+57908424 | Msa0859560:CDS |
| GAAATAAATGATGCCAAAGA+TGG | 0.474863 | 5_4:+57910586 | Msa0859560:CDS |
| GGAGTCTATGATCCTTCCCC+TGG | 0.483993 | 5_4:+57910607 | Msa0859560:CDS |
| GTTCCTCCATGTCTACCTCC+AGG | 0.490643 | 5_4:-57910625 | None:intergenic |
| TTCATCTAGGGTTTCAGCGA+GGG | 0.490829 | 5_4:+57908390 | Msa0859560:CDS |
| TGATGATATCTTAATTGTGA+GGG | 0.494408 | 5_4:-57910750 | None:intergenic |
| GGAGGAACTTATTGCGGCAA+TGG | 0.511558 | 5_4:+57910640 | Msa0859560:CDS |
| CCTTCCCCTGGAGGTAGACA+TGG | 0.519197 | 5_4:+57910619 | Msa0859560:CDS |
| TTCCTCCATGTCTACCTCCA+GGG | 0.523377 | 5_4:-57910624 | None:intergenic |
| TACAAATCGATATTTCAAAA+GGG | 0.542278 | 5_4:-57908286 | None:intergenic |
| TTGATGATATCTTAATTGTG+AGG | 0.548101 | 5_4:-57910751 | None:intergenic |
| CAATTCGAATATAAGCTGCC+AGG | 0.549080 | 5_4:-57910673 | None:intergenic |
| GTCTATGATCCTTCCCCTGG+AGG | 0.551026 | 5_4:+57910610 | Msa0859560:CDS |
| AATTATACTCTTAAGTACAA+TGG | 0.554593 | 5_4:+57908315 | Msa0859560:exon |
| GTGTTGAATTTGATCAAAAG+AGG | 0.562484 | 5_4:+57910870 | Msa0859560:three_prime_UTR |
| CCATGTCTACCTCCAGGGGA+AGG | 0.578483 | 5_4:-57910619 | None:intergenic |
| TTAATTGTGAGGGTTATCCT+CGG | 0.581656 | 5_4:-57910740 | None:intergenic |
| TAGCAAATAGGCCTTGGATG+AGG | 0.583802 | 5_4:-57908354 | None:intergenic |
| TCCTCCATGTCTACCTCCAG+GGG | 0.608221 | 5_4:-57910623 | None:intergenic |
| AGACATGGAGGAACTTATTG+CGG | 0.635738 | 5_4:+57910634 | Msa0859560:CDS |
| TTTCATCTAGGGTTTCAGCG+AGG | 0.666165 | 5_4:+57908389 | Msa0859560:CDS |
| AGCTGTTGCTGTGCAAACCG+AGG | 0.669654 | 5_4:+57910723 | Msa0859560:CDS |
| TCCCCTGGAGGTAGACATGG+AGG | 0.673287 | 5_4:+57910622 | Msa0859560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAATAAATAAATAA+TGG | + | chr5_4:57910844-57910863 | Msa0859560:three_prime_UTR | 0.0% |
| !!! | AACAAAATTAATTTTCTTTT+TGG | + | chr5_4:57908682-57908701 | Msa0859560:intron | 10.0% |
| !!! | ATATTTTTTTATATTGTACA+AGG | + | chr5_4:57909111-57909130 | Msa0859560:intron | 10.0% |
| !!! | TTTAATTCCTTTTTTTTTTT+TGG | + | chr5_4:57909794-57909813 | Msa0859560:intron | 10.0% |
| !! | TGAATAAAAATTAAAGAATA+AGG | - | chr5_4:57909838-57909857 | None:intergenic | 10.0% |
| !! | ATACTTATAAAATTCAAAAG+AGG | - | chr5_4:57908514-57908533 | None:intergenic | 15.0% |
| !!! | GAAAATTTTAAGTTTTGTAT+TGG | + | chr5_4:57908612-57908631 | Msa0859560:intron | 15.0% |
| !! | TTTAACAGATATGATTTATT+TGG | - | chr5_4:57909007-57909026 | None:intergenic | 15.0% |
| !! | ACATTTGAACTATATTATTA+AGG | + | chr5_4:57909137-57909156 | Msa0859560:intron | 15.0% |
| !! | ATATAATCATAATATATGCA+AGG | + | chr5_4:57909211-57909230 | Msa0859560:intron | 15.0% |
| !! | CAAAACAAGAAAAAAAATTA+AGG | + | chr5_4:57909264-57909283 | Msa0859560:intron | 15.0% |
| !!! | TCTCATTTTTTTTTTTTGAA+AGG | - | chr5_4:57909442-57909461 | None:intergenic | 15.0% |
| !! | AATTATACTCTTAAGTACAA+TGG | + | chr5_4:57908315-57908334 | Msa0859560:exon | 20.0% |
| !!! | TGCAATTTAGCTTTTTTTTA+GGG | - | chr5_4:57908894-57908913 | None:intergenic | 20.0% |
| !!! | ATGCAATTTAGCTTTTTTTT+AGG | - | chr5_4:57908895-57908914 | None:intergenic | 20.0% |
| !! | GAAAACAACAAATAAGTTAA+GGG | - | chr5_4:57908925-57908944 | None:intergenic | 20.0% |
| !! | TGAAAACAACAAATAAGTTA+AGG | - | chr5_4:57908926-57908945 | None:intergenic | 20.0% |
| !!! | CTTATTTGTTGTTTTCATTT+TGG | + | chr5_4:57908929-57908948 | Msa0859560:intron | 20.0% |
| !! | AAATTTAATTAGGTCTTTGA+TGG | - | chr5_4:57909073-57909092 | None:intergenic | 20.0% |
| !!! | AATTCAATGTCATTTTTAAG+TGG | - | chr5_4:57909380-57909399 | None:intergenic | 20.0% |
| !!! | AATTCAATGTCATTTTTAAG+TGG | - | chr5_4:57909380-57909399 | None:intergenic | 20.0% |
| !! | ACTACATCCAAAAAAAAAAA+AGG | - | chr5_4:57909804-57909823 | None:intergenic | 20.0% |
| !! | TATATATATAACCATCCATT+AGG | + | chr5_4:57910219-57910238 | Msa0859560:intron | 20.0% |
| !! | CTATAAAATAATTGTTCTCA+AGG | - | chr5_4:57910476-57910495 | None:intergenic | 20.0% |
| !!! | ATATATAATTTGTTTGCAGA+TGG | + | chr5_4:57910547-57910566 | Msa0859560:intron | 20.0% |
| !! | ATTCATGCAATATATTACTA+AGG | - | chr5_4:57910805-57910824 | None:intergenic | 20.0% |
| ! | TAAGAAGAACAATAGCAAAT+AGG | - | chr5_4:57908369-57908388 | None:intergenic | 25.0% |
| !! | TTGTTCTTCTTATTTCATCT+AGG | + | chr5_4:57908377-57908396 | Msa0859560:CDS | 25.0% |
| !! | TGTTCTTCTTATTTCATCTA+GGG | + | chr5_4:57908378-57908397 | Msa0859560:CDS | 25.0% |
| ! | ATAGGGAAAAAAAAGTTTGT+TGG | - | chr5_4:57908659-57908678 | None:intergenic | 25.0% |
| ! | CTTAAGTGTTAAGTTCTTAT+GGG | - | chr5_4:57908716-57908735 | None:intergenic | 25.0% |
| ! | AAAAAGCTAAATTGCATACT+TGG | + | chr5_4:57908898-57908917 | Msa0859560:intron | 25.0% |
| !!! | TTTCTTGTTTTGTTGTTTTG+TGG | - | chr5_4:57909256-57909275 | None:intergenic | 25.0% |
| ! | TTAAGGATATATGAGACTTA+AGG | + | chr5_4:57909281-57909300 | Msa0859560:intron | 25.0% |
| !! | TATTCTAAAAACTATTTGCG+TGG | + | chr5_4:57909344-57909363 | Msa0859560:intron | 25.0% |
| !! | TATTCTAAAAACTATTTGCG+TGG | + | chr5_4:57909344-57909363 | Msa0859560:intron | 25.0% |
| ! | AGAAGATTGTTTGTAAGAAA+GGG | - | chr5_4:57909687-57909706 | None:intergenic | 25.0% |
| ! | CTCCAAAAACCTATATATTT+GGG | + | chr5_4:57909870-57909889 | Msa0859560:intron | 25.0% |
| !! | AACCCAAATATATAGGTTTT+TGG | - | chr5_4:57909875-57909894 | None:intergenic | 25.0% |
| ! | ACTCTAGATAAATTCTTACT+TGG | - | chr5_4:57909903-57909922 | None:intergenic | 25.0% |
| ! | ATATATATACACACACTCAT+CGG | - | chr5_4:57910124-57910143 | None:intergenic | 25.0% |
| ! | ATATTGTAGCTATGAGATTT+GGG | + | chr5_4:57910377-57910396 | Msa0859560:intron | 25.0% |
| ! | ATCTCTGTTAATATTCCAAA+CGG | + | chr5_4:57910401-57910420 | Msa0859560:intron | 25.0% |
| ! | TGATGATATCTTAATTGTGA+GGG | - | chr5_4:57910753-57910772 | None:intergenic | 25.0% |
| !! | TTGATGATATCTTAATTGTG+AGG | - | chr5_4:57910754-57910773 | None:intergenic | 25.0% |
| ! | ATTATATAGCTCACCTGTTT+TGG | - | chr5_4:57908440-57908459 | None:intergenic | 30.0% |
| GCTTAAGTGTTAAGTTCTTA+TGG | - | chr5_4:57908717-57908736 | None:intergenic | 30.0% | |
| CTAACAAAGTACAAGTTAAG+GGG | - | chr5_4:57908984-57909003 | None:intergenic | 30.0% | |
| GCTAACAAAGTACAAGTTAA+GGG | - | chr5_4:57908985-57909004 | None:intergenic | 30.0% | |
| AAATGTTAACCGAATGTCTA+AGG | + | chr5_4:57909026-57909045 | Msa0859560:intron | 30.0% | |
| ATGTATTCACCTTAGACATT+CGG | - | chr5_4:57909038-57909057 | None:intergenic | 30.0% | |
| AGGTGAATACATATTGTAAG+TGG | + | chr5_4:57909046-57909065 | Msa0859560:intron | 30.0% | |
| ATCATAATATATGCAAGGTC+CGG | + | chr5_4:57909216-57909235 | Msa0859560:intron | 30.0% | |
| GAGAAGATTGTTTGTAAGAA+AGG | - | chr5_4:57909688-57909707 | None:intergenic | 30.0% | |
| GATTCTAATGAAAGCAAAGA+GGG | - | chr5_4:57909740-57909759 | None:intergenic | 30.0% | |
| TGATTCTAATGAAAGCAAAG+AGG | - | chr5_4:57909741-57909760 | None:intergenic | 30.0% | |
| TCTTTGCTTTCATTAGAATC+AGG | + | chr5_4:57909740-57909759 | Msa0859560:intron | 30.0% | |
| GCTCCAAAAACCTATATATT+TGG | + | chr5_4:57909869-57909888 | Msa0859560:intron | 30.0% | |
| AAGATGTAAGTCATTTGTGT+CGG | + | chr5_4:57909923-57909942 | Msa0859560:intron | 30.0% | |
| TAAACTATGAACATGCATGA+TGG | - | chr5_4:57910329-57910348 | None:intergenic | 30.0% | |
| CATATTGTAGCTATGAGATT+TGG | + | chr5_4:57910376-57910395 | Msa0859560:intron | 30.0% | |
| ATAGTTTCTTGACAATTGTG+AGG | + | chr5_4:57910492-57910511 | Msa0859560:intron | 30.0% | |
| GAAATAAATGATGCCAAAGA+TGG | + | chr5_4:57910586-57910605 | Msa0859560:CDS | 30.0% | |
| AAAAAAGCAATCCTCATCCA+AGG | + | chr5_4:57908343-57908362 | Msa0859560:CDS | 35.0% | |
| ACTTCCTCTAATACCAAAAC+AGG | + | chr5_4:57908424-57908443 | Msa0859560:CDS | 35.0% | |
| AGTATGCTTGTAAGTGATGT+TGG | + | chr5_4:57908529-57908548 | Msa0859560:intron | 35.0% | |
| ATATCATTTGCATGAGCCTT+AGG | - | chr5_4:57908578-57908597 | None:intergenic | 35.0% | |
| AAGGCTCATGCAAATGATAT+TGG | + | chr5_4:57908578-57908597 | Msa0859560:intron | 35.0% | |
| !! | AGTTTGTTGGACATTTACGT+GGG | - | chr5_4:57908646-57908665 | None:intergenic | 35.0% |
| !! | AAGTTTGTTGGACATTTACG+TGG | - | chr5_4:57908647-57908666 | None:intergenic | 35.0% |
| ! | GACTTGGAGTAGTTTTTGAA+TGG | + | chr5_4:57908743-57908762 | Msa0859560:intron | 35.0% |
| ! | TTTCTGAGAAACTTCTCAGA+AGG | - | chr5_4:57908772-57908791 | None:intergenic | 35.0% |
| !! | AAAGACTCGTCTTGATTTGT+AGG | + | chr5_4:57908820-57908839 | Msa0859560:intron | 35.0% |
| !! | AAGACTCGTCTTGATTTGTA+GGG | + | chr5_4:57908821-57908840 | Msa0859560:intron | 35.0% |
| GGCTAACAAAGTACAAGTTA+AGG | - | chr5_4:57908986-57909005 | None:intergenic | 35.0% | |
| TCATAATATATGCAAGGTCC+GGG | + | chr5_4:57909217-57909236 | Msa0859560:intron | 35.0% | |
| !!! | TTGTTTTGTTGTTTTGTGGC+CGG | - | chr5_4:57909252-57909271 | None:intergenic | 35.0% |
| !!! | AGACGTACTCTTTTTTTGAC+AGG | + | chr5_4:57909311-57909330 | Msa0859560:intron | 35.0% |
| !!! | AGACGTACTCTTTTTTTGAC+AGG | + | chr5_4:57909311-57909330 | Msa0859560:intron | 35.0% |
| ATCTTCGTCAATAGACGATT+AGG | + | chr5_4:57910047-57910066 | Msa0859560:intron | 35.0% | |
| TCTTCGTCAATAGACGATTA+GGG | + | chr5_4:57910048-57910067 | Msa0859560:intron | 35.0% | |
| AACGAGATCACTATGAGAAA+TGG | - | chr5_4:57910084-57910103 | None:intergenic | 35.0% | |
| GTGTATTCTAACCTAATGGA+TGG | - | chr5_4:57910233-57910252 | None:intergenic | 35.0% | |
| ATGAGTGTTTGTGATGTGTT+TGG | - | chr5_4:57910261-57910280 | None:intergenic | 35.0% | |
| ! | AGAGGTAGATTAGCTCTTAA+TGG | + | chr5_4:57910286-57910305 | Msa0859560:intron | 35.0% |
| GAAAAGAAGATCAAACCGTT+TGG | - | chr5_4:57910419-57910438 | None:intergenic | 35.0% | |
| AAAAAATGCTGCTCATATGC+TGG | + | chr5_4:57910697-57910716 | Msa0859560:CDS | 35.0% | |
| TTAATTGTGAGGGTTATCCT+CGG | - | chr5_4:57910743-57910762 | None:intergenic | 35.0% | |
| GAACAATAGCAAATAGGCCT+TGG | - | chr5_4:57908363-57908382 | None:intergenic | 40.0% | |
| !!! | CTCACCTGTTTTGGTATTAG+AGG | - | chr5_4:57908431-57908450 | None:intergenic | 40.0% |
| TTGCATTTCGTAGCAACCTA+AGG | + | chr5_4:57908559-57908578 | Msa0859560:intron | 40.0% | |
| TTTGTTGGACATTTACGTGG+GGG | - | chr5_4:57908644-57908663 | None:intergenic | 40.0% | |
| ! | GTTTGTTGGACATTTACGTG+GGG | - | chr5_4:57908645-57908664 | None:intergenic | 40.0% |
| ACACTTAAGCATGCTTGACT+TGG | + | chr5_4:57908727-57908746 | Msa0859560:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | chr5_4:57909218-57909237 | Msa0859560:intron | 40.0% | |
| !!! | TGTTTTGTTGTTTTGTGGCC+GGG | - | chr5_4:57909251-57909270 | None:intergenic | 40.0% |
| GGTCGCAAACCCAAATATAT+AGG | - | chr5_4:57909882-57909901 | None:intergenic | 40.0% | |
| TATATACACACACTCATCGG+TGG | - | chr5_4:57910121-57910140 | None:intergenic | 40.0% | |
| TGTTTGTGATGTGTTTGGTC+GGG | - | chr5_4:57910256-57910275 | None:intergenic | 40.0% | |
| GTGTTTGTGATGTGTTTGGT+CGG | - | chr5_4:57910257-57910276 | None:intergenic | 40.0% | |
| CACAAACACTCATCAGTAAG+AGG | + | chr5_4:57910268-57910287 | Msa0859560:intron | 40.0% | |
| AGGATCATAGACTCCATCTT+TGG | - | chr5_4:57910602-57910621 | None:intergenic | 40.0% | |
| AGACATGGAGGAACTTATTG+CGG | + | chr5_4:57910634-57910653 | Msa0859560:CDS | 40.0% | |
| CAATTCGAATATAAGCTGCC+AGG | - | chr5_4:57910676-57910695 | None:intergenic | 40.0% | |
| TAGCAAATAGGCCTTGGATG+AGG | - | chr5_4:57908357-57908376 | None:intergenic | 45.0% | |
| ! | TTTCATCTAGGGTTTCAGCG+AGG | + | chr5_4:57908389-57908408 | Msa0859560:CDS | 45.0% |
| ! | TTCATCTAGGGTTTCAGCGA+GGG | + | chr5_4:57908390-57908409 | Msa0859560:CDS | 45.0% |
| !!! | GTTTTGTTGTTTTGTGGCCG+GGG | - | chr5_4:57909250-57909269 | None:intergenic | 45.0% |
| CGGGGTGTATTCTAACCTAA+TGG | - | chr5_4:57910237-57910256 | None:intergenic | 45.0% | |
| GTTTGTGATGTGTTTGGTCG+GGG | - | chr5_4:57910255-57910274 | None:intergenic | 45.0% | |
| AGTCGAGCTGTGAAAGAAGT+TGG | - | chr5_4:57910441-57910460 | None:intergenic | 45.0% | |
| !!! | AAATTAATTTTGTTTATATA+GGG | - | chr5_4:57908676-57908695 | None:intergenic | 5.0% |
| !!! | AAAATTAATTTTGTTTATAT+AGG | - | chr5_4:57908677-57908696 | None:intergenic | 5.0% |
| !! | TAGTATTAAAAAATTTAATT+AGG | - | chr5_4:57909083-57909102 | None:intergenic | 5.0% |
| !!! | TTAAATATATTTTTTTTGAA+AGG | - | chr5_4:57909602-57909621 | None:intergenic | 5.0% |
| !!! | CTAAAATTAAATATATTTTT+CGG | - | chr5_4:57909637-57909656 | None:intergenic | 5.0% |
| !!! | ATATATTTAATTTTAGTTAT+AGG | + | chr5_4:57909641-57909660 | Msa0859560:intron | 5.0% |
| ! | TCTCAGAAAGCGTGCGAATG+AGG | + | chr5_4:57908783-57908802 | Msa0859560:intron | 50.0% |
| TTCCTCCATGTCTACCTCCA+GGG | - | chr5_4:57910627-57910646 | None:intergenic | 50.0% | |
| GGAGGAACTTATTGCGGCAA+TGG | + | chr5_4:57910640-57910659 | Msa0859560:CDS | 50.0% | |
| GGAGTCTATGATCCTTCCCC+TGG | + | chr5_4:57910607-57910626 | Msa0859560:CDS | 55.0% | |
| GTCTATGATCCTTCCCCTGG+AGG | + | chr5_4:57910610-57910629 | Msa0859560:CDS | 55.0% | |
| TCCTCCATGTCTACCTCCAG+GGG | - | chr5_4:57910626-57910645 | None:intergenic | 55.0% | |
| GTTCCTCCATGTCTACCTCC+AGG | - | chr5_4:57910628-57910647 | None:intergenic | 55.0% | |
| GGCAATGGTTGTTGCAGTCC+TGG | + | chr5_4:57910655-57910674 | Msa0859560:CDS | 55.0% | |
| AGCTGTTGCTGTGCAAACCG+AGG | + | chr5_4:57910723-57910742 | Msa0859560:CDS | 55.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | + | chr5_4:57909230-57909249 | Msa0859560:intron | 60.0% | |
| CCATGTCTACCTCCAGGGGA+AGG | - | chr5_4:57910622-57910641 | None:intergenic | 60.0% | |
| CCTTCCCCTGGAGGTAGACA+TGG | + | chr5_4:57910619-57910638 | Msa0859560:CDS | 60.0% | |
| TCCCCTGGAGGTAGACATGG+AGG | + | chr5_4:57910622-57910641 | Msa0859560:CDS | 60.0% | |
| TGTGGCCGGGGTTTGAACCC+CGG | - | chr5_4:57909238-57909257 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57908288 | 57910889 | 57908288 | ID=Msa0859560;Name=Msa0859560 |
| chr5_4 | mRNA | 57908288 | 57910889 | 57908288 | ID=Msa0859560-mRNA-1;Parent=Msa0859560;Name=Msa0859560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=46|1|1|1|1|1|2|127|102 |
| chr5_4 | exon | 57908288 | 57908445 | 57908288 | ID=Msa0859560-mRNA-1:exon:17651;Parent=Msa0859560-mRNA-1 |
| chr5_4 | exon | 57910566 | 57910889 | 57910566 | ID=Msa0859560-mRNA-1:exon:17652;Parent=Msa0859560-mRNA-1 |
| chr5_4 | five_prime_UTR | 57908288 | 57908333 | 57908288 | ID=Msa0859560-mRNA-1:five_prime_utr;Parent=Msa0859560-mRNA-1 |
| chr5_4 | CDS | 57908334 | 57908445 | 57908334 | ID=Msa0859560-mRNA-1:cds;Parent=Msa0859560-mRNA-1 |
| chr5_4 | CDS | 57910566 | 57910762 | 57910566 | ID=Msa0859560-mRNA-1:cds;Parent=Msa0859560-mRNA-1 |
| chr5_4 | three_prime_UTR | 57910763 | 57910889 | 57910763 | ID=Msa0859560-mRNA-1:three_prime_utr;Parent=Msa0859560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
