AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0185390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185390 MtrunA17_Chr6g0488891 90.498 442 19 7 1 424 4 440 0.0 707
Msa0185390 MtrunA17_Chr4g0016811 32.231 121 66 1 317 421 116 236 7.54e-16 76.6
Msa0185390 MtrunA17_CPg0492871 32.231 121 66 1 317 421 107 227 7.77e-16 76.6
Msa0185390 MtrunA17_Chr4g0015721 32.231 121 66 1 317 421 107 227 7.77e-16 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0185390 AT4G31040.1 56.616 461 137 12 1 424 4 438 1.14e-172 490
Msa0185390 ATCG00530.1 33.981 103 68 0 319 421 125 227 5.12e-14 71.6

Find 94 sgRNAs with CRISPR-Local

Find 813 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGATTGAATATTTGTTTA+TGG 0.174829 1_4:-75537780 Msa0185390:three_prime_UTR
TGAAATATACTCATCACTTT+TGG 0.223046 1_4:+75538222 None:intergenic
ATCTTCTCACGTCGAGCATT+TGG 0.232890 1_4:+75543934 None:intergenic
AGAATCAAGACCATAGAAAA+TGG 0.246090 1_4:-75548032 Msa0185390:CDS
TTGATGTAGTAGTTATTTAT+TGG 0.251952 1_4:+75537903 None:intergenic
CAGAAGCTATTATAGATATA+AGG 0.255265 1_4:-75548074 Msa0185390:CDS
GCAGTAGTTCTTCTTCTTCT+TGG 0.263005 1_4:-75547984 Msa0185390:CDS
GAGATAATTGTCGAGCATTA+TGG 0.263013 1_4:-75539990 Msa0185390:CDS
ATAAACAATATTTCTGATAC+TGG 0.274252 1_4:-75540793 Msa0185390:CDS
GTAGCTTTGCTCAAATTTAC+TGG 0.274892 1_4:-75540826 Msa0185390:CDS
AGAGTGGAATAAAAGATTAT+AGG 0.285564 1_4:-75547960 Msa0185390:CDS
TGGTTTAAGGGAAGATGATA+TGG 0.290571 1_4:-75548178 Msa0185390:intron
CTCTTTCTGATAATGAGGTT+TGG 0.338311 1_4:-75543830 Msa0185390:CDS
GAGTGGAATAAAAGATTATA+GGG 0.338883 1_4:-75547959 Msa0185390:CDS
ATGATTTCAACGAAAATAAC+GGG 0.361681 1_4:-75547915 Msa0185390:CDS
TTCAACAAGATGATGGAAAC+TGG 0.367263 1_4:-75548203 Msa0185390:CDS
CAGTAGTTCTTCTTCTTCTT+GGG 0.368246 1_4:-75547983 Msa0185390:CDS
TTTAAATAAGATGAAATTGT+TGG 0.372207 1_4:+75548392 None:intergenic
TTTGCTACGGCTTTATCAAC+TGG 0.375119 1_4:-75538144 Msa0185390:three_prime_UTR
TCTTCTCACGTCGAGCATTT+GGG 0.383872 1_4:+75543935 None:intergenic
ATGGAGGGTGCTTCTTCATA+AGG 0.384059 1_4:-75537761 Msa0185390:three_prime_UTR
CTAGTTTACAATTTCATGTC+TGG 0.384336 1_4:-75538184 Msa0185390:exon
GGAGAGGAAGTTATTAGAGT+TGG 0.388683 1_4:+75548335 None:intergenic
AGTGTTGATTATTATACCTT+GGG 0.400456 1_4:-75547446 Msa0185390:CDS
AGATAATTGTCGAGCATTAT+GGG 0.402075 1_4:-75539989 Msa0185390:CDS
TTTGAGCTTGAGGTAGAGAT+TGG 0.410529 1_4:-75543864 Msa0185390:CDS
ATGCATACAAGAATGAGGTT+AGG 0.412627 1_4:+75538102 None:intergenic
TGGAGGGTGCTTCTTCATAA+GGG 0.413115 1_4:-75537760 Msa0185390:three_prime_UTR
AGAAGCTATTATAGATATAA+GGG 0.413200 1_4:-75548073 Msa0185390:CDS
AAAATGGGAAGACTGGCTTT+TGG 0.418846 1_4:-75548016 Msa0185390:CDS
TGCAGGTATCATTCTGAATC+TGG 0.421866 1_4:-75540029 Msa0185390:intron
GTTGAGAGATGAGTGGAGAC+TGG 0.423027 1_4:-75543044 Msa0185390:CDS
TTGATGCATGCGTGAAACTT+TGG 0.441774 1_4:-75539911 Msa0185390:CDS
TGATGCATGCGTGAAACTTT+GGG 0.444730 1_4:-75539910 Msa0185390:intron
TCCACCTCTTTCTGATAATG+AGG 0.446773 1_4:-75543835 Msa0185390:CDS
TGCATACAAGAATGAGGTTA+GGG 0.446807 1_4:+75538103 None:intergenic
TAAGGGAAGCACAAGAAGAT+AGG 0.448612 1_4:-75548056 Msa0185390:CDS
ATGAAAGATGTTGAGGATGA+TGG 0.453244 1_4:+75548313 None:intergenic
TTCTGATAATGAGGTTTGGT+GGG 0.458984 1_4:-75543826 Msa0185390:CDS
TCTTCTTCTTCTTGGGAGAG+TGG 0.463042 1_4:-75547976 Msa0185390:CDS
TTATGGGCTTGAAGTTGATC+AGG 0.463345 1_4:-75539973 Msa0185390:CDS
CTATAGTACAAGGCGGTTCA+AGG 0.466591 1_4:-75537964 Msa0185390:three_prime_UTR
GTTCCACGAGTTTCAGCTAC+TGG 0.467289 1_4:-75538041 Msa0185390:three_prime_UTR
GTAGAGCATTTGCCAACATA+TGG 0.472062 1_4:-75543015 Msa0185390:CDS
ACCATAGAAAATGGGAAGAC+TGG 0.481141 1_4:-75548023 Msa0185390:CDS
GATGATTTCAACGAAAATAA+CGG 0.482770 1_4:-75547916 Msa0185390:CDS
GAATCAAGACCATAGAAAAT+GGG 0.490106 1_4:-75548031 Msa0185390:CDS
ATGAGGTTTGGTGGGAATTG+CGG 0.491615 1_4:-75543818 Msa0185390:CDS
CAATTTCATGTCTGGCAAAG+TGG 0.494191 1_4:-75538176 Msa0185390:three_prime_UTR
CAAGATGATGGAAACTGGCT+TGG 0.495134 1_4:-75548198 Msa0185390:intron
GATTATTATACCTTGGGCAA+TGG 0.495136 1_4:-75547440 Msa0185390:CDS
ATGTAGTAGTTATTTATTGG+CGG 0.497990 1_4:+75537906 None:intergenic
TCTCTACCTCAAGCTCAAAT+CGG 0.502478 1_4:+75543868 None:intergenic
GGAAGATGATATGGTTGAAG+AGG 0.505252 1_4:-75548169 Msa0185390:intron
TTTCTGATAATGAGGTTTGG+TGG 0.513096 1_4:-75543827 Msa0185390:CDS
GAGTGTTGATTATTATACCT+TGG 0.517293 1_4:-75547447 Msa0185390:CDS
GTGGATTCAACTGTTTGCTA+CGG 0.526344 1_4:-75538157 Msa0185390:three_prime_UTR
CTTTATGTGCACATAAAGAA+TGG 0.528373 1_4:-75537939 Msa0185390:three_prime_UTR
GATGTTGAGGATGATGGGAG+AGG 0.528613 1_4:+75548319 None:intergenic
GATTGAATATTTGTTTATGG+AGG 0.541104 1_4:-75537777 Msa0185390:three_prime_UTR
AAATGAAGGTAGTAAAACGT+TGG 0.542544 1_4:+75548283 None:intergenic
TTTACTGGTTCTATAGTACA+AGG 0.545745 1_4:-75537974 Msa0185390:three_prime_UTR
CAAACCTCATTATCAGAAAG+AGG 0.554822 1_4:+75543831 None:intergenic
TGAAAGATGTTGAGGATGAT+GGG 0.556372 1_4:+75548314 None:intergenic
AACAGTTACAATTACACCGT+TGG 0.559401 1_4:+75538061 None:intergenic
TGGAATAAAAGATTATAGGG+AGG 0.565202 1_4:-75547956 Msa0185390:CDS
ATGATGATAATACAAGTTTG+TGG 0.565780 1_4:+75548364 None:intergenic
AAGAAGAAAAGTTCGAAGCA+TGG 0.567823 1_4:-75548107 Msa0185390:CDS
AATAAATGCATACAAGAATG+AGG 0.570300 1_4:+75538097 None:intergenic
TTGCTACGGCTTTATCAACT+GGG 0.570674 1_4:-75538143 Msa0185390:three_prime_UTR
AAATTCCTGTGGGTTCGCAC+AGG 0.572231 1_4:+75537995 None:intergenic
ACGCATGCATCAACGATGAC+TGG 0.582155 1_4:+75539921 None:intergenic
ATTGATATTGAAATGTCCAA+CGG 0.583439 1_4:-75538077 Msa0185390:three_prime_UTR
ATTGAATATTTGTTTATGGA+GGG 0.584106 1_4:-75537776 Msa0185390:three_prime_UTR
GCAGACCTGTGCGAACCCAC+AGG 0.595390 1_4:-75538000 Msa0185390:three_prime_UTR
CAATATTTCTGATACTGGGA+AGG 0.598189 1_4:-75540788 Msa0185390:CDS
GATTAGAGTTGAGAGATGAG+TGG 0.598836 1_4:-75543051 Msa0185390:CDS
GGAGGGTGCTTCTTCATAAG+GGG 0.598914 1_4:-75537759 Msa0185390:three_prime_UTR
TAAACAATATTTCTGATACT+GGG 0.599714 1_4:-75540792 Msa0185390:CDS
GGTATCATTCTGAATCTGGT+TGG 0.602489 1_4:-75540025 Msa0185390:CDS
AGAGGATGTTGAATTTGAAG+TGG 0.607061 1_4:-75548151 Msa0185390:CDS
TAGAACCAGTAAAATTCCTG+TGG 0.609303 1_4:+75537984 None:intergenic
TCGAGCATTTGGGCGGCAAG+TGG 0.610025 1_4:+75543945 None:intergenic
GAAAAGCCGATTTGAGCTTG+AGG 0.623474 1_4:-75543874 Msa0185390:CDS
AACTGTGTCAGACCATATGT+TGG 0.629492 1_4:+75543003 None:intergenic
ACCTCATTATCAGAAAGAGG+TGG 0.641204 1_4:+75543834 None:intergenic
ACTAGAAAATCCATTGCCCA+AGG 0.642290 1_4:+75547430 None:intergenic
AGAACCAGTAAAATTCCTGT+GGG 0.644208 1_4:+75537985 None:intergenic
TAGGGAGGAGTTACGAGGCG+AGG 0.650202 1_4:-75547941 Msa0185390:CDS
TCTCACGTCGAGCATTTGGG+CGG 0.653413 1_4:+75543938 None:intergenic
GATTATAGGGAGGAGTTACG+AGG 0.665569 1_4:-75547946 Msa0185390:CDS
GAACCAGTAGCTGAAACTCG+TGG 0.676599 1_4:+75538038 None:intergenic
ACTGGTTCTATAGTACAAGG+CGG 0.732904 1_4:-75537971 Msa0185390:three_prime_UTR
TGATTTCAACGAAAATAACG+GGG 0.743389 1_4:-75547914 Msa0185390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAAATAGAA+GGG + chr1_4:75543086-75543105 None:intergenic 10.0%
!! TATTTCCTAAATATATTAAA+TGG + chr1_4:75543414-75543433 None:intergenic 10.0%
!! TAATATATTTAGGAAATATT+TGG - chr1_4:75543416-75543435 Msa0185390:intron 10.0%
!!! AAAAGACATTTTTAATATTA+AGG - chr1_4:75543735-75543754 Msa0185390:intron 10.0%
!! AATATTAAGAGATATAAATT+AGG - chr1_4:75544821-75544840 Msa0185390:intron 10.0%
!! AATTATAAAATGAATATACA+AGG - chr1_4:75546409-75546428 Msa0185390:intron 10.0%
!! ATTATAAAATGAATATACAA+GGG - chr1_4:75546410-75546429 Msa0185390:intron 10.0%
!! TAATAATTATGATTAACTAA+TGG - chr1_4:75546597-75546616 Msa0185390:intron 10.0%
!! TTTAAATAAGATGAAATTGT+TGG + chr1_4:75537776-75537795 None:intergenic 15.0%
!!! TACTTAAAAGCTTTATTTAT+TGG - chr1_4:75538581-75538600 Msa0185390:intron 15.0%
!!! ATTATTTGATAATTTATCCT+TGG - chr1_4:75539009-75539028 Msa0185390:intron 15.0%
!!! ATTATTTGATAATTTATCCT+TGG - chr1_4:75539009-75539028 Msa0185390:intron 15.0%
!!! TAAACAAAGCTATTAATTTT+AGG - chr1_4:75542041-75542060 Msa0185390:intron 15.0%
!!! AATCTATAATACTTTAAGAT+AGG + chr1_4:75542642-75542661 None:intergenic 15.0%
!! GCAAAAAAAAAAAAAATAGA+AGG + chr1_4:75543087-75543106 None:intergenic 15.0%
!! ATAAACATATTAAATATCCT+TGG - chr1_4:75545289-75545308 Msa0185390:intron 15.0%
!! TACTTTCAAATATTTCTTAA+TGG + chr1_4:75545809-75545828 None:intergenic 15.0%
!! TATAAATCTGTTAAAGAAAT+TGG - chr1_4:75546335-75546354 Msa0185390:intron 15.0%
!!! TTTCTTGTTTTTATGGTTTT+TGG + chr1_4:75537914-75537933 None:intergenic 20.0%
!!! TACTGTTTTTCTTGTTTTTA+TGG + chr1_4:75537921-75537940 None:intergenic 20.0%
!!! AAATTTTTTCAACAAGATGA+TGG - chr1_4:75537955-75537974 Msa0185390:three_prime_UTR 20.0%
!! AGAAGCTATTATAGATATAA+GGG - chr1_4:75538092-75538111 Msa0185390:three_prime_UTR 20.0%
!!! TCTGTTAAGTATTTGATTTT+TGG - chr1_4:75538282-75538301 Msa0185390:intron 20.0%
!!! ATAATGCATTCTCTAATTTT+AGG - chr1_4:75538410-75538429 Msa0185390:intron 20.0%
!!! TAATGCATTCTCTAATTTTA+GGG - chr1_4:75538411-75538430 Msa0185390:intron 20.0%
!! TATATAAGTAAATCTGTAGA+GGG - chr1_4:75539040-75539059 Msa0185390:intron 20.0%
!! TTTCATAAAATAGTATTTCG+CGG + chr1_4:75540780-75540799 None:intergenic 20.0%
!! TATATAAGTAAATCTGTAGA+GGG - chr1_4:75539040-75539059 Msa0185390:intron 20.0%
!! TAAAGAATCATTAAACTAAG+AGG + chr1_4:75541992-75542011 None:intergenic 20.0%
!! TGTTAGTGATCATTAAAATT+AGG - chr1_4:75542476-75542495 Msa0185390:intron 20.0%
!! AATATCTTAACTTATCTCTT+AGG - chr1_4:75542601-75542620 Msa0185390:intron 20.0%
!! ATAGATTATCTCTTAGTATT+AGG - chr1_4:75542655-75542674 Msa0185390:intron 20.0%
!! TAGACAATTTATAAAACACT+AGG + chr1_4:75542767-75542786 None:intergenic 20.0%
!!! AAGACTTTTTATCATGAATA+TGG + chr1_4:75542795-75542814 None:intergenic 20.0%
!!! TGAAAATTTTATGATAAGGA+CGG + chr1_4:75542837-75542856 None:intergenic 20.0%
!!! AAGGTGAAAATTTTATGATA+AGG + chr1_4:75542841-75542860 None:intergenic 20.0%
!! TAAACTTGATGAAGATTAAA+GGG + chr1_4:75542895-75542914 None:intergenic 20.0%
!! AAAAAAATAGAAGGGAAATA+AGG + chr1_4:75543078-75543097 None:intergenic 20.0%
!! AAAAATAACAGTGATGTTTA+TGG + chr1_4:75543306-75543325 None:intergenic 20.0%
!! GACTTCCATTTAATATATTT+AGG - chr1_4:75543406-75543425 Msa0185390:intron 20.0%
!! TATTTAGGAAATATTTGGTT+TGG - chr1_4:75543421-75543440 Msa0185390:intron 20.0%
!!! GTCTAAATAAATGTTGTTTT+AGG - chr1_4:75543448-75543467 Msa0185390:intron 20.0%
!!! TATTTTTCAAATCAAACTCA+AGG - chr1_4:75543589-75543608 Msa0185390:intron 20.0%
!! TTAATATTAAGGTGATACAA+AGG - chr1_4:75543746-75543765 Msa0185390:intron 20.0%
!! AAAAAGTTATAAATAACACG+TGG - chr1_4:75544135-75544154 Msa0185390:intron 20.0%
!! TATGCTGAATATATATGAAT+AGG - chr1_4:75544252-75544271 Msa0185390:intron 20.0%
!! TAAGATACTATCATATATTC+TGG - chr1_4:75544871-75544890 Msa0185390:intron 20.0%
!!! GTTTCTCTTATAGTTTTTAA+AGG + chr1_4:75544977-75544996 None:intergenic 20.0%
!! TAATGAGTTAGATAGAAATA+TGG - chr1_4:75545018-75545037 Msa0185390:intron 20.0%
!!! ATAAACAATATTTCTGATAC+TGG - chr1_4:75545372-75545391 Msa0185390:intron 20.0%
!!! TAAACAATATTTCTGATACT+GGG - chr1_4:75545373-75545392 Msa0185390:intron 20.0%
!! ATAGATAACAATTATCAAGT+TGG + chr1_4:75545453-75545472 None:intergenic 20.0%
!! ATAGGTTTATTAAATCAAGT+AGG + chr1_4:75546060-75546079 None:intergenic 20.0%
!! AAGAGAAGCTAAAATAAAAT+AGG + chr1_4:75546078-75546097 None:intergenic 20.0%
!! AAAGCAAACAAAAATAGTAA+TGG + chr1_4:75546221-75546240 None:intergenic 20.0%
!! AGTGAAATACAAAAAGTTAA+AGG - chr1_4:75546561-75546580 Msa0185390:intron 20.0%
!! GTGAAATACAAAAAGTTAAA+GGG - chr1_4:75546562-75546581 Msa0185390:intron 20.0%
!! TGAAATACAAAAAGTTAAAG+GGG - chr1_4:75546563-75546582 Msa0185390:intron 20.0%
!! AATTTGATTGGATTCTAAAT+AGG - chr1_4:75546726-75546745 Msa0185390:intron 20.0%
!!! AATGATACAATCTTTGATTT+TGG + chr1_4:75546997-75547016 None:intergenic 20.0%
!! TATCATGTCATATCTAATAT+GGG + chr1_4:75547371-75547390 None:intergenic 20.0%
!!! TTTTTTTAGAAAGCCAAAAT+AGG + chr1_4:75547557-75547576 None:intergenic 20.0%
!! GTAAATATTATTCAAGACAA+AGG + chr1_4:75547792-75547811 None:intergenic 20.0%
!! TGTCTTGAATAATATTTACA+AGG - chr1_4:75547793-75547812 Msa0185390:intron 20.0%
!! TTGATGTAGTAGTTATTTAT+TGG + chr1_4:75548265-75548284 None:intergenic 20.0%
!! TGAGATTGAATATTTGTTTA+TGG - chr1_4:75548385-75548404 Msa0185390:CDS 20.0%
!! ATTGAATATTTGTTTATGGA+GGG - chr1_4:75548389-75548408 Msa0185390:CDS 20.0%
! ATGATGATAATACAAGTTTG+TGG + chr1_4:75537804-75537823 None:intergenic 25.0%
!!! TTTTGAAATGAAAGATGTTG+AGG + chr1_4:75537862-75537881 None:intergenic 25.0%
! CAGAAGCTATTATAGATATA+AGG - chr1_4:75538091-75538110 Msa0185390:three_prime_UTR 25.0%
! AGAGTGGAATAAAAGATTAT+AGG - chr1_4:75538205-75538224 Msa0185390:CDS 25.0%
! GAGTGGAATAAAAGATTATA+GGG - chr1_4:75538206-75538225 Msa0185390:CDS 25.0%
! GATGATTTCAACGAAAATAA+CGG - chr1_4:75538249-75538268 Msa0185390:CDS 25.0%
! ATGATTTCAACGAAAATAAC+GGG - chr1_4:75538250-75538269 Msa0185390:CDS 25.0%
!! AAGAAGCATAGTTAAAAACA+CGG + chr1_4:75538353-75538372 None:intergenic 25.0%
! TAACTATGCTTCTTCAAATT+CGG - chr1_4:75538359-75538378 Msa0185390:intron 25.0%
!!! TTTGGATTGACTTATTTTTG+AGG - chr1_4:75538438-75538457 Msa0185390:intron 25.0%
!!! TTGACTTATTTTTGAGGATA+TGG - chr1_4:75538444-75538463 Msa0185390:intron 25.0%
! TATTACTCACAAGCTTATTA+AGG + chr1_4:75538563-75538582 None:intergenic 25.0%
! TGAGTTACTACTAGTAATAA+GGG + chr1_4:75538653-75538672 None:intergenic 25.0%
! TTGAGTTACTACTAGTAATA+AGG + chr1_4:75538654-75538673 None:intergenic 25.0%
!! TTATTGCAGGCTAAATTTTT+GGG - chr1_4:75538696-75538715 Msa0185390:intron 25.0%
!!! AGTGTTGATTATTATACCTT+GGG - chr1_4:75538719-75538738 Msa0185390:intron 25.0%
! ATAGATTACCTGTCTAAAAA+AGG + chr1_4:75538780-75538799 None:intergenic 25.0%
!!! TCCATTAATAAGTTTTATGC+TGG - chr1_4:75538829-75538848 Msa0185390:intron 25.0%
! ACCAGCATAAAACTTATTAA+TGG + chr1_4:75538833-75538852 None:intergenic 25.0%
! ACTTATATAGAATACTACCA+AGG + chr1_4:75539029-75539048 None:intergenic 25.0%
! CTATATAAGTAAATCTGTAG+AGG - chr1_4:75539039-75539058 Msa0185390:intron 25.0%
!!! TTATTTGTTAGTACCCTTTT+AGG - chr1_4:75539084-75539103 Msa0185390:intron 25.0%
!!! TATTTGTTAGTACCCTTTTA+GGG - chr1_4:75539085-75539104 Msa0185390:intron 25.0%
! AGTAGATGGAATAAAGAAAA+GGG + chr1_4:75539158-75539177 None:intergenic 25.0%
! AAGTAGATGGAATAAAGAAA+AGG + chr1_4:75539159-75539178 None:intergenic 25.0%
! GGTGAATATTATTAAGTAGA+TGG + chr1_4:75539172-75539191 None:intergenic 25.0%
!! ATTGATTTCTTCTGTGTTAT+TGG - chr1_4:75539209-75539228 Msa0185390:intron 25.0%
! GAATCCATTAGAAAAATTCA+AGG - chr1_4:75539380-75539399 Msa0185390:intron 25.0%
!! AACTCCTTGAATTTTTCTAA+TGG + chr1_4:75539387-75539406 None:intergenic 25.0%
! TGTTTGAACTTAATTGGAAA+GGG - chr1_4:75540429-75540448 Msa0185390:intron 25.0%
! TTTGTCTTCAAAATTTACGA+AGG + chr1_4:75540456-75540475 None:intergenic 25.0%
!!! GTTATTCTATTCACTAGTTT+TGG - chr1_4:75540679-75540698 Msa0185390:intron 25.0%
!! ATAAGAAAGTTGCATTTTCT+GGG + chr1_4:75540719-75540738 None:intergenic 25.0%
! ATGAAACTTGTATATGACAA+AGG - chr1_4:75540794-75540813 Msa0185390:CDS 25.0%
! TGAAACTTGTATATGACAAA+GGG - chr1_4:75540795-75540814 Msa0185390:CDS 25.0%
!! CTTAATTTGGTATATGATAG+AGG - chr1_4:75540848-75540867 Msa0185390:intron 25.0%
!! TATATGATAGAGGAAAGTTT+TGG - chr1_4:75540858-75540877 Msa0185390:intron 25.0%
!! AATTTTCCTGAGAAACAAAT+AGG + chr1_4:75540941-75540960 None:intergenic 25.0%
! TGATGATAGGAAATTAGATA+TGG - chr1_4:75541039-75541058 Msa0185390:intron 25.0%
! GATGATAGGAAATTAGATAT+GGG - chr1_4:75541040-75541059 Msa0185390:intron 25.0%
! ACTTATATAGAATACTACCA+AGG + chr1_4:75539029-75539048 None:intergenic 25.0%
! CTATATAAGTAAATCTGTAG+AGG - chr1_4:75539039-75539058 Msa0185390:intron 25.0%
!!! TTATTTGTTAGTACCCTTTT+AGG - chr1_4:75539084-75539103 Msa0185390:intron 25.0%
!!! TATTTGTTAGTACCCTTTTA+GGG - chr1_4:75539085-75539104 Msa0185390:intron 25.0%
! AGTAGATGGAATAAAGAAAA+GGG + chr1_4:75539158-75539177 None:intergenic 25.0%
! AAGTAGATGGAATAAAGAAA+AGG + chr1_4:75539159-75539178 None:intergenic 25.0%
! GGTGAATATTATTAAGTAGA+TGG + chr1_4:75539172-75539191 None:intergenic 25.0%
!!! AGTTTCTATTGATTTTATGC+TGG - chr1_4:75541365-75541384 Msa0185390:intron 25.0%
!!! TGATTGTTTTTCCTTCTAAT+TGG - chr1_4:75542157-75542176 Msa0185390:intron 25.0%
! TCAAAAACTTCAAATGATTG+AGG - chr1_4:75542255-75542274 Msa0185390:intron 25.0%
!! CATCTAACAATTTCCATTTT+GGG + chr1_4:75542455-75542474 None:intergenic 25.0%
!! TCATCTAACAATTTCCATTT+TGG + chr1_4:75542456-75542475 None:intergenic 25.0%
! TAACTTATCTCTTAGGATTT+AGG - chr1_4:75542608-75542627 Msa0185390:intron 25.0%
! ATGCTAACAATTAAGAAACA+TGG + chr1_4:75542683-75542702 None:intergenic 25.0%
! CTCGTAATTCTAATCAAATA+GGG + chr1_4:75542715-75542734 None:intergenic 25.0%
! ACTCGTAATTCTAATCAAAT+AGG + chr1_4:75542716-75542735 None:intergenic 25.0%
! TTTAGCATGATTATTCGTAA+AGG + chr1_4:75542860-75542879 None:intergenic 25.0%
! GTAAACTTGATGAAGATTAA+AGG + chr1_4:75542896-75542915 None:intergenic 25.0%
!!! TTAGTGTCATTTGTTTAAGA+TGG - chr1_4:75543018-75543037 Msa0185390:CDS 25.0%
! GTATCAAAACATTTAGCATA+AGG + chr1_4:75543254-75543273 None:intergenic 25.0%
! GAAAATACGTTCAACAAAAT+TGG + chr1_4:75543281-75543300 None:intergenic 25.0%
! GAACAAACTTATTTATCTTG+TGG + chr1_4:75543526-75543545 None:intergenic 25.0%
! GAAAATCTATGGTAAGTTAT+TGG + chr1_4:75543946-75543965 None:intergenic 25.0%
!! TATCAGAAACAAAAGCATAA+TGG - chr1_4:75544090-75544109 Msa0185390:intron 25.0%
!! ATAAATAACACGTGGATTAA+AGG - chr1_4:75544143-75544162 Msa0185390:intron 25.0%
! GAAATGTGTAGATTAAAAGA+AGG - chr1_4:75544679-75544698 Msa0185390:intron 25.0%
! AATTAAGAGATTGAAACCTA+GGG - chr1_4:75544917-75544936 Msa0185390:intron 25.0%
!! CTATTCTTTTTACAAAAGTG+TGG + chr1_4:75544949-75544968 None:intergenic 25.0%
!! CACACTTTTGTAAAAAGAAT+AGG - chr1_4:75544947-75544966 Msa0185390:intron 25.0%
! AAACTATAAGAGAAACGATT+AGG - chr1_4:75544981-75545000 Msa0185390:intron 25.0%
! TGGTATATGATAGAACATTA+TGG - chr1_4:75545038-75545057 Msa0185390:intron 25.0%
! TGTTGTTGTATTTGTTCATT+TGG - chr1_4:75545116-75545135 Msa0185390:intron 25.0%
!! TTATCACAGATATTTTCCTA+GGG - chr1_4:75545415-75545434 Msa0185390:intron 25.0%
!!! AACAATTATCAAGTTGGAAA+AGG + chr1_4:75545447-75545466 None:intergenic 25.0%
! AATATGATACAATGTGGATA+TGG + chr1_4:75545674-75545693 None:intergenic 25.0%
! AATGCTTTGTATAATGTATC+AGG + chr1_4:75545849-75545868 None:intergenic 25.0%
! TGCCATTAAATGATTTAAGT+AGG - chr1_4:75545870-75545889 Msa0185390:intron 25.0%
! AGCCTACTTAAATCATTTAA+TGG + chr1_4:75545875-75545894 None:intergenic 25.0%
!! TTTACTCTTTTGTTGCATAT+TGG - chr1_4:75546107-75546126 Msa0185390:intron 25.0%
!! TTACTCTTTTGTTGCATATT+GGG - chr1_4:75546108-75546127 Msa0185390:intron 25.0%
!!! GCTAAATGTCATTGATTTTA+TGG - chr1_4:75546300-75546319 Msa0185390:intron 25.0%
!! CAACTAATGTTCAAGTTATT+AGG + chr1_4:75546367-75546386 None:intergenic 25.0%
! TTTACACTGTTGTGATTTAT+AGG + chr1_4:75546526-75546545 None:intergenic 25.0%
! GAAATACAAAAAGTTAAAGG+GGG - chr1_4:75546564-75546583 Msa0185390:intron 25.0%
! AAATTTCAATGTATCTCAGA+AGG + chr1_4:75546711-75546730 None:intergenic 25.0%
! GAGATACATTGAAATTTGAT+TGG - chr1_4:75546714-75546733 Msa0185390:intron 25.0%
!!! ACAGTTTTTTTTAATGTCAG+TGG - chr1_4:75546813-75546832 Msa0185390:intron 25.0%
!!! TTTTTTTTAATGTCAGTGGA+GGG - chr1_4:75546817-75546836 Msa0185390:intron 25.0%
!!! CCACTTATATATGCTTTTTT+GGG + chr1_4:75547214-75547233 None:intergenic 25.0%
!!! ACCACTTATATATGCTTTTT+TGG + chr1_4:75547215-75547234 None:intergenic 25.0%
!! AAAAAAGCATATATAAGTGG+TGG - chr1_4:75547214-75547233 Msa0185390:intron 25.0%
!! AAAAAGCATATATAAGTGGT+GGG - chr1_4:75547215-75547234 Msa0185390:intron 25.0%
!!! ACACTTCAGTTTTTCAATAT+TGG - chr1_4:75547322-75547341 Msa0185390:intron 25.0%
! GTATCATGTCATATCTAATA+TGG + chr1_4:75547372-75547391 None:intergenic 25.0%
! GAAAATCTGTTTATAAGTGA+CGG - chr1_4:75547392-75547411 Msa0185390:intron 25.0%
!! GAAATCTTCTTGATTTTACT+TGG - chr1_4:75547478-75547497 Msa0185390:intron 25.0%
!!! GACATATCTTGAAAGTATTT+TGG + chr1_4:75547583-75547602 None:intergenic 25.0%
!! TGACAGTACAATTTTTATAG+CGG + chr1_4:75547842-75547861 None:intergenic 25.0%
!!! AAATATACTCATCACTTTTG+GGG + chr1_4:75547944-75547963 None:intergenic 25.0%
!!! GAAATATACTCATCACTTTT+GGG + chr1_4:75547945-75547964 None:intergenic 25.0%
!! TGAAATATACTCATCACTTT+TGG + chr1_4:75547946-75547965 None:intergenic 25.0%
! AATAAATGCATACAAGAATG+AGG + chr1_4:75548071-75548090 None:intergenic 25.0%
! ATTGATATTGAAATGTCCAA+CGG - chr1_4:75548088-75548107 Msa0185390:CDS 25.0%
! ATGTAGTAGTTATTTATTGG+CGG + chr1_4:75548262-75548281 None:intergenic 25.0%
! GATTGAATATTTGTTTATGG+AGG - chr1_4:75548388-75548407 Msa0185390:CDS 25.0%
AAATGAAGGTAGTAAAACGT+TGG + chr1_4:75537885-75537904 None:intergenic 30.0%
!!! GTTTTTGGCTTTTGAAATGA+AGG + chr1_4:75537899-75537918 None:intergenic 30.0%
AGAATCAAGACCATAGAAAA+TGG - chr1_4:75538133-75538152 Msa0185390:three_prime_UTR 30.0%
GAATCAAGACCATAGAAAAT+GGG - chr1_4:75538134-75538153 Msa0185390:three_prime_UTR 30.0%
TGGAATAAAAGATTATAGGG+AGG - chr1_4:75538209-75538228 Msa0185390:CDS 30.0%
TGATTTCAACGAAAATAACG+GGG - chr1_4:75538251-75538270 Msa0185390:CDS 30.0%
!! TTGATTTTTGGAAGAGAAGA+TGG - chr1_4:75538294-75538313 Msa0185390:intron 30.0%
CAAGCTTATTAAGGTAGTTA+TGG + chr1_4:75538554-75538573 None:intergenic 30.0%
CAAAAATAAGCCAATCCAAA+CGG - chr1_4:75538626-75538645 Msa0185390:intron 30.0%
AAAAATAAGCCAATCCAAAC+GGG - chr1_4:75538627-75538646 Msa0185390:intron 30.0%
! GTTATTGCAGGCTAAATTTT+TGG - chr1_4:75538695-75538714 Msa0185390:intron 30.0%
!! GAGTGTTGATTATTATACCT+TGG - chr1_4:75538718-75538737 Msa0185390:intron 30.0%
! TGGTTTTCAAAATTGCTTGA+AGG - chr1_4:75538849-75538868 Msa0185390:intron 30.0%
TGGTGATAGGAAATTAGATA+TGG - chr1_4:75538876-75538895 Msa0185390:intron 30.0%
GGTGATAGGAAATTAGATAT+GGG - chr1_4:75538877-75538896 Msa0185390:intron 30.0%
TATCTTCTTACTCTCTCTAT+TGG + chr1_4:75538910-75538929 None:intergenic 30.0%
CAATAGAAACTAGAGAATAG+TGG + chr1_4:75539193-75539212 None:intergenic 30.0%
! TCAACAGAGGTTTTTAACAT+CGG - chr1_4:75540287-75540306 Msa0185390:intron 30.0%
TCAACACAATCTTCCAATAT+TGG + chr1_4:75540356-75540375 None:intergenic 30.0%
TTGCTGTGTTTGAACTTAAT+TGG - chr1_4:75540423-75540442 Msa0185390:intron 30.0%
GTGTTTGAACTTAATTGGAA+AGG - chr1_4:75540428-75540447 Msa0185390:intron 30.0%
! GAATTTCAAGGCTTTTTACT+TGG - chr1_4:75540622-75540641 Msa0185390:intron 30.0%
GAATAACTGCATTGTAACAT+TGG + chr1_4:75540666-75540685 None:intergenic 30.0%
! CATAAGAAAGTTGCATTTTC+TGG + chr1_4:75540720-75540739 None:intergenic 30.0%
CAGAAAATGCAACTTTCTTA+TGG - chr1_4:75540718-75540737 Msa0185390:intron 30.0%
AAATGCAACTTTCTTATGGT+TGG - chr1_4:75540722-75540741 Msa0185390:intron 30.0%
AATGCAACTTTCTTATGGTT+GGG - chr1_4:75540723-75540742 Msa0185390:intron 30.0%
! TATATGACAAAGGGAAGTTT+TGG - chr1_4:75540804-75540823 Msa0185390:CDS 30.0%
! TTGTTTCTCAGGAAAATTGA+AGG - chr1_4:75540943-75540962 Msa0185390:intron 30.0%
TATCTTCTTACTCTCTCTAT+TGG + chr1_4:75538910-75538929 None:intergenic 30.0%
CAATAGAAACTAGAGAATAG+TGG + chr1_4:75539193-75539212 None:intergenic 30.0%
! GGTTAATCTGAGATGTAAAA+AGG - chr1_4:75541427-75541446 Msa0185390:intron 30.0%
! TAATCTGAGATGTAAAAAGG+AGG - chr1_4:75541430-75541449 Msa0185390:intron 30.0%
! AGTTAGCTATCTAGCTTATA+AGG + chr1_4:75541465-75541484 None:intergenic 30.0%
! AAGCTAGATAGCTAACTTTT+AGG - chr1_4:75541468-75541487 Msa0185390:intron 30.0%
! AGCTAGATAGCTAACTTTTA+GGG - chr1_4:75541469-75541488 Msa0185390:intron 30.0%
!! TGATAGGATTTTGGGTATTA+TGG - chr1_4:75541650-75541669 Msa0185390:intron 30.0%
CCTTAATTGCTAGATATCAA+GGG + chr1_4:75541741-75541760 None:intergenic 30.0%
CCTTGATATCTAGCAATTAA+GGG - chr1_4:75541739-75541758 Msa0185390:intron 30.0%
! GATAAATATCCAAGCACTTT+TGG + chr1_4:75541771-75541790 None:intergenic 30.0%
! TTGCTTTCTTTTTCTTGAGT+AGG - chr1_4:75542083-75542102 Msa0185390:intron 30.0%
AAGTTGCTTAACCAATTAGA+AGG + chr1_4:75542171-75542190 None:intergenic 30.0%
! CATGCTCATTTAAGATAATC+AGG + chr1_4:75542406-75542425 None:intergenic 30.0%
TATCTTAAATGAGCATGAAG+TGG - chr1_4:75542409-75542428 Msa0185390:intron 30.0%
AATTCAGGAAATTCCCAAAA+TGG - chr1_4:75542439-75542458 Msa0185390:intron 30.0%
TTATAAAACACCTTGTGAAC+TGG - chr1_4:75542928-75542947 Msa0185390:intron 30.0%
AAAGATAATAAACCTAGTCC+TGG - chr1_4:75542967-75542986 Msa0185390:CDS 30.0%
AACAATAAACTAACAAGTCC+AGG + chr1_4:75542988-75543007 None:intergenic 30.0%
!!! TGCTATCCCAATTTTGAAAT+TGG + chr1_4:75543375-75543394 None:intergenic 30.0%
AATTTCAAAATTGGGATAGC+AGG - chr1_4:75543374-75543393 Msa0185390:intron 30.0%
ATTTCAAAATTGGGATAGCA+GGG - chr1_4:75543375-75543394 Msa0185390:intron 30.0%
! ATTTCAGGTAATGATCAAGA+AGG + chr1_4:75543483-75543502 None:intergenic 30.0%
! GTAGATGATATTGTCATTTC+AGG + chr1_4:75543498-75543517 None:intergenic 30.0%
AGGTTACACAAATCATTGTA+TGG + chr1_4:75543635-75543654 None:intergenic 30.0%
! TTTTTGCATAGACTTAGCAT+AGG + chr1_4:75543719-75543738 None:intergenic 30.0%
ATCTATGGTAAGTTATTGGT+GGG + chr1_4:75543942-75543961 None:intergenic 30.0%
AATCTATGGTAAGTTATTGG+TGG + chr1_4:75543943-75543962 None:intergenic 30.0%
! AACAGATTTTACTCCTTTTC+AGG + chr1_4:75544283-75544302 None:intergenic 30.0%
!! AGCAAATGTTACTTTCTTTG+AGG + chr1_4:75544347-75544366 None:intergenic 30.0%
ATTGAAAGTGGTCAAACTTA+TGG - chr1_4:75544482-75544501 Msa0185390:intron 30.0%
TGAGTGTCATATTGGATTAA+AGG - chr1_4:75544549-75544568 Msa0185390:intron 30.0%
GAGTGTCATATTGGATTAAA+GGG - chr1_4:75544550-75544569 Msa0185390:intron 30.0%
! TTCAACTAGTTCTTTGTATG+AGG - chr1_4:75544574-75544593 Msa0185390:intron 30.0%
ATGAGGAATGGTTTATTGAA+TGG - chr1_4:75544591-75544610 Msa0185390:intron 30.0%
TAATCTACACATTTCTTTCC+AGG + chr1_4:75544674-75544693 None:intergenic 30.0%
! CTACTGTTACATTTCCTTTT+TGG + chr1_4:75544717-75544736 None:intergenic 30.0%
ATACTATCATATATTCTGGC+AGG - chr1_4:75544875-75544894 Msa0185390:intron 30.0%
CAATTAAGAGATTGAAACCT+AGG - chr1_4:75544916-75544935 Msa0185390:intron 30.0%
ATGATAGAACATTATGGCAT+CGG - chr1_4:75545044-75545063 Msa0185390:intron 30.0%
GTTGTATTTGTTCATTTGGT+TGG - chr1_4:75545120-75545139 Msa0185390:intron 30.0%
CCTCCTAAAAAATTAGTGTT+CGG + chr1_4:75545148-75545167 None:intergenic 30.0%
CCAAAATAGGAAAACAACTT+AGG + chr1_4:75545226-75545245 None:intergenic 30.0%
!! CCTAAGTTGTTTTCCTATTT+TGG - chr1_4:75545223-75545242 Msa0185390:intron 30.0%
TAAACATCAACGACCAAAAT+AGG + chr1_4:75545239-75545258 None:intergenic 30.0%
! CTTATCACAGATATTTTCCT+AGG - chr1_4:75545414-75545433 Msa0185390:intron 30.0%
!!! TGTTTTGACTTTTGAATGCA+TGG + chr1_4:75545547-75545566 None:intergenic 30.0%
TCTAAATTCAACATACGACA+CGG + chr1_4:75545644-75545663 None:intergenic 30.0%
GACACAAATATGATACAATG+TGG + chr1_4:75545680-75545699 None:intergenic 30.0%
TTAAGTAAGGTAGACTTGAT+GGG - chr1_4:75545725-75545744 Msa0185390:intron 30.0%
TTCTATTAGCAACCTTTGAT+AGG - chr1_4:75546030-75546049 Msa0185390:intron 30.0%
AGATAATTGTCGAGCATTAT+GGG - chr1_4:75546176-75546195 Msa0185390:intron 30.0%
GCAAACAAAAATAGTAATGG+CGG + chr1_4:75546218-75546237 None:intergenic 30.0%
! ATGTTCAAGTTATTAGGTAG+AGG + chr1_4:75546361-75546380 None:intergenic 30.0%
CTATTTGACCTCAATAATGT+GGG + chr1_4:75546671-75546690 None:intergenic 30.0%
TCTATTTGACCTCAATAATG+TGG + chr1_4:75546672-75546691 None:intergenic 30.0%
!!! GTTTTTTTTAATGTCAGTGG+AGG - chr1_4:75546816-75546835 Msa0185390:intron 30.0%
ACTACAAATTCCATATCTCA+AGG + chr1_4:75546964-75546983 None:intergenic 30.0%
ATTGTATCATTGTTGAGAGT+GGG - chr1_4:75547006-75547025 Msa0185390:intron 30.0%
! CCCAAAAAAGCATATATAAG+TGG - chr1_4:75547211-75547230 Msa0185390:intron 30.0%
!! AAAACCGACTTGTATAGTAA+GGG + chr1_4:75547244-75547263 None:intergenic 30.0%
ATTTCCTAAACTAGGTTATG+AGG + chr1_4:75547463-75547482 None:intergenic 30.0%
TCAAGAAGATTTCCTAAACT+AGG + chr1_4:75547471-75547490 None:intergenic 30.0%
TTATGTTATCCTTTGACCTT+AGG - chr1_4:75547504-75547523 Msa0185390:intron 30.0%
!! GATATTAGATAATGGACCTA+AGG + chr1_4:75547523-75547542 None:intergenic 30.0%
!! TTGGCACTGATATTAGATAA+TGG + chr1_4:75547531-75547550 None:intergenic 30.0%
AGAAAGCCAAAATAGGATAT+TGG + chr1_4:75547550-75547569 None:intergenic 30.0%
!!! AAGGTTGCTATTTTGTTACA+TGG + chr1_4:75547699-75547718 None:intergenic 30.0%
ATAATATTCAAACCTACTGC+AGG + chr1_4:75547752-75547771 None:intergenic 30.0%
ACTGTCAATTACTTTGTAGT+TGG - chr1_4:75547855-75547874 Msa0185390:CDS 30.0%
TGCATCACAAAAACAATAAG+GGG + chr1_4:75547895-75547914 None:intergenic 30.0%
CTGCATCACAAAAACAATAA+GGG + chr1_4:75547896-75547915 None:intergenic 30.0%
CTAGTTTACAATTTCATGTC+TGG - chr1_4:75547981-75548000 Msa0185390:CDS 30.0%
!! TTTACTGGTTCTATAGTACA+AGG - chr1_4:75548191-75548210 Msa0185390:intron 30.0%
CTTTATGTGCACATAAAGAA+TGG - chr1_4:75548226-75548245 Msa0185390:CDS 30.0%
TGAAAGATGTTGAGGATGAT+GGG + chr1_4:75537854-75537873 None:intergenic 35.0%
ATGAAAGATGTTGAGGATGA+TGG + chr1_4:75537855-75537874 None:intergenic 35.0%
ACAAGAAAAACAGTACCACT+TGG - chr1_4:75537926-75537945 Msa0185390:three_prime_UTR 35.0%
AAAAAATTTCTGCCACCAAG+TGG + chr1_4:75537944-75537963 None:intergenic 35.0%
!! TTCAACAAGATGATGGAAAC+TGG - chr1_4:75537962-75537981 Msa0185390:three_prime_UTR 35.0%
TGGTTTAAGGGAAGATGATA+TGG - chr1_4:75537987-75538006 Msa0185390:three_prime_UTR 35.0%
AGAGGATGTTGAATTTGAAG+TGG - chr1_4:75538014-75538033 Msa0185390:three_prime_UTR 35.0%
AAGAAGAAAAGTTCGAAGCA+TGG - chr1_4:75538058-75538077 Msa0185390:three_prime_UTR 35.0%
CAGTAGTTCTTCTTCTTCTT+GGG - chr1_4:75538182-75538201 Msa0185390:three_prime_UTR 35.0%
!! ATTTTTGGAAGAGAAGATGG+TGG - chr1_4:75538297-75538316 Msa0185390:intron 35.0%
!!! CTCTAATTTTAGGGCTAGTT+TGG - chr1_4:75538420-75538439 Msa0185390:intron 35.0%
!! CTGAAACTGTTTGTTATTGC+AGG - chr1_4:75538683-75538702 Msa0185390:intron 35.0%
GATTATTATACCTTGGGCAA+TGG - chr1_4:75538725-75538744 Msa0185390:intron 35.0%
!!! TACTCATGCCTTTTTTAGAC+AGG - chr1_4:75538769-75538788 Msa0185390:intron 35.0%
CAAAATTGCTTGAAGGAAGA+TGG - chr1_4:75538856-75538875 Msa0185390:intron 35.0%
AAAATTAAATCGCACAGCCA+TGG + chr1_4:75539277-75539296 None:intergenic 35.0%
!! TGTGCGATTTAATTTTGTGG+AGG - chr1_4:75539281-75539300 Msa0185390:intron 35.0%
! TAATTTTGTGGAGGATCGTT+TGG - chr1_4:75539290-75539309 Msa0185390:intron 35.0%
CATGTCAAAACAAGAATCGA+AGG - chr1_4:75539315-75539334 Msa0185390:intron 35.0%
! CACACTGAGAAGAGTATAAT+TGG + chr1_4:75539449-75539468 None:intergenic 35.0%
CAATTATACTCTTCTCAGTG+TGG - chr1_4:75539447-75539466 Msa0185390:intron 35.0%
ACAAAATGGGTCAAAACTCT+TGG - chr1_4:75539628-75539647 Msa0185390:intron 35.0%
CAAAATGGGTCAAAACTCTT+GGG - chr1_4:75539629-75539648 Msa0185390:intron 35.0%
GTTACCATCATCTTCTTGAT+GGG + chr1_4:75539679-75539698 None:intergenic 35.0%
TGTTACCATCATCTTCTTGA+TGG + chr1_4:75539680-75539699 None:intergenic 35.0%
! ATCAAGAAGATGATGGTAAC+AGG - chr1_4:75539679-75539698 Msa0185390:intron 35.0%
GGTCAATCATGCTTAATTTC+CGG - chr1_4:75539735-75539754 Msa0185390:intron 35.0%
AAGAAACCATCCAATTCTGT+CGG - chr1_4:75539899-75539918 Msa0185390:intron 35.0%
TTCGTGGGTATTACTATTGA+AGG - chr1_4:75540031-75540050 Msa0185390:intron 35.0%
! TTTGGGATTGTGAACACTAA+AGG - chr1_4:75540107-75540126 Msa0185390:intron 35.0%
ACAAGATATCTGGCAAGTAT+GGG - chr1_4:75540257-75540276 Msa0185390:intron 35.0%
!! TAACATCGGTTCAATTGAGA+AGG - chr1_4:75540301-75540320 Msa0185390:intron 35.0%
AGAAGGATCTAGAGATGTTA+AGG - chr1_4:75540318-75540337 Msa0185390:intron 35.0%
GAAGGATCTAGAGATGTTAA+GGG - chr1_4:75540319-75540338 Msa0185390:intron 35.0%
AGAGATGTTAAGGGCAAAAA+CGG - chr1_4:75540328-75540347 Msa0185390:intron 35.0%
!! ATAGTGTTTTATTGCCGTTC+TGG - chr1_4:75540380-75540399 Msa0185390:intron 35.0%
! TTTCAAGGCTTTTTACTTGG+AGG - chr1_4:75540625-75540644 Msa0185390:intron 35.0%
!!! ACTAGTTTTGGTAACACCAT+GGG - chr1_4:75540691-75540710 Msa0185390:intron 35.0%
ATGCAACTTTCTTATGGTTG+GGG - chr1_4:75540724-75540743 Msa0185390:intron 35.0%
!! AGTTTTGGTCTTCAAGCATT+TGG - chr1_4:75540819-75540838 Msa0185390:CDS 35.0%
! TCCATTCCTATTTGTTTCTC+AGG - chr1_4:75540932-75540951 Msa0185390:intron 35.0%
TCCTGAGAAACAAATAGGAA+TGG + chr1_4:75540936-75540955 None:intergenic 35.0%
!!! CTATAGCCATTTTTGCTACT+GGG + chr1_4:75540973-75540992 None:intergenic 35.0%
!!! TCTATAGCCATTTTTGCTAC+TGG + chr1_4:75540974-75540993 None:intergenic 35.0%
AGAAACTATATCCAACCTTG+AGG - chr1_4:75540991-75541010 Msa0185390:intron 35.0%
! TGGTTTGCAAAATTGCTTGA+AGG - chr1_4:75541385-75541404 Msa0185390:intron 35.0%
CAAAATTGCTTGAAGGAAGA+TGG - chr1_4:75538856-75538875 Msa0185390:intron 35.0%
TCAGATTAACCTCATTCAAC+TGG + chr1_4:75541418-75541437 None:intergenic 35.0%
!!! TGGTGCTATGATAGGATTTT+GGG - chr1_4:75541642-75541661 Msa0185390:intron 35.0%
CCCTTGATATCTAGCAATTA+AGG - chr1_4:75541738-75541757 Msa0185390:intron 35.0%
CCCTTAATTGCTAGATATCA+AGG + chr1_4:75541742-75541761 None:intergenic 35.0%
TGATATCTAGCAATTAAGGG+AGG - chr1_4:75541742-75541761 Msa0185390:intron 35.0%
GATATCTAGCAATTAAGGGA+GGG - chr1_4:75541743-75541762 Msa0185390:intron 35.0%
! TGAATATTCAGAGCACTCTT+GGG + chr1_4:75541879-75541898 None:intergenic 35.0%
GTGTGTTTGTTTAAACTTGC+TGG - chr1_4:75542132-75542151 Msa0185390:intron 35.0%
CAAACCTCATTATCAGAAAG+AGG + chr1_4:75542337-75542356 None:intergenic 35.0%
! CTCTTTCTGATAATGAGGTT+TGG - chr1_4:75542335-75542354 Msa0185390:intron 35.0%
! TTTCTGATAATGAGGTTTGG+TGG - chr1_4:75542338-75542357 Msa0185390:intron 35.0%
! TTCTGATAATGAGGTTTGGT+GGG - chr1_4:75542339-75542358 Msa0185390:intron 35.0%
TGAAGTGGTACTTTGAATTC+AGG - chr1_4:75542424-75542443 Msa0185390:intron 35.0%
! ATATGGTCTGACACAGTTTT+CGG - chr1_4:75543167-75543186 Msa0185390:intron 35.0%
ATTTGTGTAACCTGCAAACA+AGG - chr1_4:75543642-75543661 Msa0185390:intron 35.0%
ATGCAAAAATGGCGTTTGTT+CGG + chr1_4:75543805-75543824 None:intergenic 35.0%
TCATCAGGGCTTTCTTTAAT+AGG - chr1_4:75543911-75543930 Msa0185390:CDS 35.0%
! CTTACCATAGATTTTCCAGA+AGG - chr1_4:75543950-75543969 Msa0185390:CDS 35.0%
! TCTTCCTTCTGGAAAATCTA+TGG + chr1_4:75543957-75543976 None:intergenic 35.0%
! ATAGATTTTCCAGAAGGAAG+AGG - chr1_4:75543956-75543975 Msa0185390:CDS 35.0%
!! GAAACAAAAGCATAATGGAC+AGG - chr1_4:75544095-75544114 Msa0185390:intron 35.0%
TGAATAGGTAGTACCTGAAA+AGG - chr1_4:75544267-75544286 Msa0185390:intron 35.0%
TCGCATCACTAACTATATCA+AGG + chr1_4:75544311-75544330 None:intergenic 35.0%
ATAGTTAGTGATGCGAAGTA+AGG - chr1_4:75544315-75544334 Msa0185390:intron 35.0%
TAGTTAGTGATGCGAAGTAA+GGG - chr1_4:75544316-75544335 Msa0185390:intron 35.0%
GGTATTCAAGAGTTCAAATG+GGG + chr1_4:75544411-75544430 None:intergenic 35.0%
GGGTATTCAAGAGTTCAAAT+GGG + chr1_4:75544412-75544431 None:intergenic 35.0%
TGGGTATTCAAGAGTTCAAA+TGG + chr1_4:75544413-75544432 None:intergenic 35.0%
CTGCTAAGTGTGTATTTCTT+GGG + chr1_4:75544432-75544451 None:intergenic 35.0%
CACAACAACGAAATTGAAAG+TGG - chr1_4:75544470-75544489 Msa0185390:intron 35.0%
! CTAGTTCTTTGTATGAGGAA+TGG - chr1_4:75544579-75544598 Msa0185390:intron 35.0%
GATGTTCAGGATTACTATCT+AGG + chr1_4:75544635-75544654 None:intergenic 35.0%
!!! CATTTCCTTTTTGGTTTCAC+AGG + chr1_4:75544708-75544727 None:intergenic 35.0%
CTAACAGTTCCAAACAGAAT+GGG + chr1_4:75544747-75544766 None:intergenic 35.0%
TCTAACAGTTCCAAACAGAA+TGG + chr1_4:75544748-75544767 None:intergenic 35.0%
!! TCTCTTAATTGCCGATTCAT+AGG + chr1_4:75544907-75544926 None:intergenic 35.0%
!!! GAGCCGAACACTAATTTTTT+AGG - chr1_4:75545142-75545161 Msa0185390:intron 35.0%
!!! CCGAACACTAATTTTTTAGG+AGG - chr1_4:75545145-75545164 Msa0185390:intron 35.0%
TGAGGAAAGAAACAAAACCA+AGG + chr1_4:75545309-75545328 None:intergenic 35.0%
! GTAGCTTTGCTCAAATTTAC+TGG - chr1_4:75545339-75545358 Msa0185390:intron 35.0%
! CAATATTTCTGATACTGGGA+AGG - chr1_4:75545377-75545396 Msa0185390:intron 35.0%
! CTTTTGAATGCATGGATACT+TGG + chr1_4:75545539-75545558 None:intergenic 35.0%
CGAGGTTTCATAGTTAAGTA+AGG - chr1_4:75545712-75545731 Msa0185390:intron 35.0%
GTTAAGTAAGGTAGACTTGA+TGG - chr1_4:75545724-75545743 Msa0185390:intron 35.0%
TAAGTAAGGTAGACTTGATG+GGG - chr1_4:75545726-75545745 Msa0185390:intron 35.0%
GGGGAATAAAAAAGAGTTAG+CGG - chr1_4:75545745-75545764 Msa0185390:intron 35.0%
TAAAAAAGAGTTAGCGGTAG+AGG - chr1_4:75545751-75545770 Msa0185390:intron 35.0%
AAAAAAGAGTTAGCGGTAGA+GGG - chr1_4:75545752-75545771 Msa0185390:intron 35.0%
GTATAATGTATCAGGTGCAA+AGG + chr1_4:75545841-75545860 None:intergenic 35.0%
! CAATCTTTTCCCATTTGAAG+GGG + chr1_4:75545899-75545918 None:intergenic 35.0%
! CCAATCTTTTCCCATTTGAA+GGG + chr1_4:75545900-75545919 None:intergenic 35.0%
! ACCAATCTTTTCCCATTTGA+AGG + chr1_4:75545901-75545920 None:intergenic 35.0%
!! GAAAAGATTGGTCTCGTATA+AGG - chr1_4:75545909-75545928 Msa0185390:intron 35.0%
CAAGTAGGAAATCCTATCAA+AGG + chr1_4:75546045-75546064 None:intergenic 35.0%
GAGATAATTGTCGAGCATTA+TGG - chr1_4:75546175-75546194 Msa0185390:intron 35.0%
! TATACCGCTTTAGCAGTTTT+GGG + chr1_4:75546489-75546508 None:intergenic 35.0%
CTGTTGTGATTTATAGGTAG+CGG + chr1_4:75546520-75546539 None:intergenic 35.0%
!! CAATTAGCAAATGATGGACA+AGG + chr1_4:75546630-75546649 None:intergenic 35.0%
! CTTGTCCATCATTTGCTAAT+TGG - chr1_4:75546628-75546647 Msa0185390:intron 35.0%
! TCCATCATTTGCTAATTGGT+TGG - chr1_4:75546632-75546651 Msa0185390:intron 35.0%
ACCAACCAATTAGCAAATGA+TGG + chr1_4:75546636-75546655 None:intergenic 35.0%
! ACTTTTTGCATCCTCTTCTT+CGG + chr1_4:75546754-75546773 None:intergenic 35.0%
AAGAAGAGGATGCAAAAAGT+TGG - chr1_4:75546754-75546773 Msa0185390:intron 35.0%
TCTCGAACATTGTAAACTAG+TGG + chr1_4:75546780-75546799 None:intergenic 35.0%
! ACTAGTTTACAATGTTCGAG+AGG - chr1_4:75546779-75546798 Msa0185390:intron 35.0%
CTAGTTTACAATGTTCGAGA+GGG - chr1_4:75546780-75546799 Msa0185390:intron 35.0%
TAGTTTACAATGTTCGAGAG+GGG - chr1_4:75546781-75546800 Msa0185390:intron 35.0%
GATTGTATCATTGTTGAGAG+TGG - chr1_4:75547005-75547024 Msa0185390:intron 35.0%
TTGTATCATTGTTGAGAGTG+GGG - chr1_4:75547007-75547026 Msa0185390:intron 35.0%
!! AAGAAGGTGCCATATATATG+TGG + chr1_4:75547059-75547078 None:intergenic 35.0%
CAAAGAGCTAACAAACAAGA+AGG + chr1_4:75547075-75547094 None:intergenic 35.0%
! CTTCTTGTTTGTTAGCTCTT+TGG - chr1_4:75547073-75547092 Msa0185390:intron 35.0%
GGTCATATCACATTCATTGT+GGG + chr1_4:75547193-75547212 None:intergenic 35.0%
!! CAAAACCGACTTGTATAGTA+AGG + chr1_4:75547245-75547264 None:intergenic 35.0%
!! TACTATACAAGTCGGTTTTG+TGG - chr1_4:75547245-75547264 Msa0185390:intron 35.0%
!! ACTATACAAGTCGGTTTTGT+GGG - chr1_4:75547246-75547265 Msa0185390:intron 35.0%
CCAACAGATTTGTATGGTAA+GGG + chr1_4:75547275-75547294 None:intergenic 35.0%
CCTTACCATACAAATCTGTT+GGG - chr1_4:75547273-75547292 Msa0185390:intron 35.0%
CCACCTATTATCAAACAACT+CGG - chr1_4:75547296-75547315 Msa0185390:intron 35.0%
! GATCCGAGTTGTTTGATAAT+AGG + chr1_4:75547302-75547321 None:intergenic 35.0%
TTTCAATATTGGACGTGAGA+AGG - chr1_4:75547333-75547352 Msa0185390:intron 35.0%
TTCAATATTGGACGTGAGAA+GGG - chr1_4:75547334-75547353 Msa0185390:intron 35.0%
ATATCTCTCATCTTACAAGC+CGG - chr1_4:75547415-75547434 Msa0185390:CDS 35.0%
CTAATTCAACCTTCTAAACC+CGG + chr1_4:75547437-75547456 None:intergenic 35.0%
! TCAGTGCCAATATCCTATTT+TGG - chr1_4:75547541-75547560 Msa0185390:intron 35.0%
ATGGAGTGGTACAAAGATTT+AGG + chr1_4:75547616-75547635 None:intergenic 35.0%
! ATTTTGTTACATGGTGGTCA+TGG + chr1_4:75547690-75547709 None:intergenic 35.0%
!!! GTTGCTATTTTGTTACATGG+TGG + chr1_4:75547696-75547715 None:intergenic 35.0%
GCTGCATCACAAAAACAATA+AGG + chr1_4:75547897-75547916 None:intergenic 35.0%
TGCATACAAGAATGAGGTTA+GGG + chr1_4:75548065-75548084 None:intergenic 35.0%
ATGCATACAAGAATGAGGTT+AGG + chr1_4:75548066-75548085 None:intergenic 35.0%
AACAGTTACAATTACACCGT+TGG + chr1_4:75548107-75548126 None:intergenic 35.0%
AGAACCAGTAAAATTCCTGT+GGG + chr1_4:75548183-75548202 None:intergenic 35.0%
TAGAACCAGTAAAATTCCTG+TGG + chr1_4:75548184-75548203 None:intergenic 35.0%
GGAGAGGAAGTTATTAGAGT+TGG + chr1_4:75537833-75537852 None:intergenic 40.0%
AGAAAAACAGTACCACTTGG+TGG - chr1_4:75537929-75537948 Msa0185390:three_prime_UTR 40.0%
!! ATGGAAACTGGCTTGGTTTA+AGG - chr1_4:75537974-75537993 Msa0185390:three_prime_UTR 40.0%
!! TGGAAACTGGCTTGGTTTAA+GGG - chr1_4:75537975-75537994 Msa0185390:three_prime_UTR 40.0%
GGAAGATGATATGGTTGAAG+AGG - chr1_4:75537996-75538015 Msa0185390:three_prime_UTR 40.0%
! TAAGGGAAGCACAAGAAGAT+AGG - chr1_4:75538109-75538128 Msa0185390:three_prime_UTR 40.0%
ACCATAGAAAATGGGAAGAC+TGG - chr1_4:75538142-75538161 Msa0185390:three_prime_UTR 40.0%
!!! AAAATGGGAAGACTGGCTTT+TGG - chr1_4:75538149-75538168 Msa0185390:three_prime_UTR 40.0%
GCAGTAGTTCTTCTTCTTCT+TGG - chr1_4:75538181-75538200 Msa0185390:three_prime_UTR 40.0%
ACTAGAAAATCCATTGCCCA+AGG + chr1_4:75538738-75538757 None:intergenic 40.0%
GGAAATTAGATATGGGCCTT+AGG - chr1_4:75538884-75538903 Msa0185390:intron 40.0%
! TTACTCTCTCTATTGGCCTA+AGG + chr1_4:75538903-75538922 None:intergenic 40.0%
!! ATTGGCTCTGCTCTATCAAT+TGG - chr1_4:75539227-75539246 Msa0185390:intron 40.0%
!! GGCTGTGCGATTTAATTTTG+TGG - chr1_4:75539278-75539297 Msa0185390:intron 40.0%
CAAAGCACGTTGAATCTCTT+CGG + chr1_4:75539358-75539377 None:intergenic 40.0%
TTCAAGGAGTTGAAACACAC+TGG - chr1_4:75539396-75539415 Msa0185390:intron 40.0%
TAACCCAAAAGTTGTTGCTC+CGG + chr1_4:75539480-75539499 None:intergenic 40.0%
!!! CTTTTGGGTTACTTCATCAG+TGG - chr1_4:75539489-75539508 Msa0185390:intron 40.0%
! TCGCGTTCAGGTTACAAAAT+GGG - chr1_4:75539615-75539634 Msa0185390:intron 40.0%
CTTGTGAAACCTTGTCGATA+TGG + chr1_4:75539766-75539785 None:intergenic 40.0%
TCAACCTCTAGTGTGATTTC+TGG - chr1_4:75539795-75539814 Msa0185390:intron 40.0%
TTCACCAGAAATCACACTAG+AGG + chr1_4:75539802-75539821 None:intergenic 40.0%
!! TGTGATTTCTGGTGAAACTG+AGG - chr1_4:75539806-75539825 Msa0185390:intron 40.0%
GAACACAGAGCAATTGCTTT+GGG - chr1_4:75539870-75539889 Msa0185390:intron 40.0%
AACACAGAGCAATTGCTTTG+GGG - chr1_4:75539871-75539890 Msa0185390:intron 40.0%
TGGAATTGAACCTTCGTCTT+TGG - chr1_4:75539932-75539951 Msa0185390:CDS 40.0%
AATTGAACCTTCGTCTTTGG+CGG - chr1_4:75539935-75539954 Msa0185390:CDS 40.0%
!! TGATCTATCGATTCCGAAGA+CGG + chr1_4:75539978-75539997 None:intergenic 40.0%
CGGAATCGATAGATCAGAAA+CGG - chr1_4:75539982-75540001 Msa0185390:CDS 40.0%
AAACGGAAATTGAGAACCGT+GGG - chr1_4:75539999-75540018 Msa0185390:CDS 40.0%
AGGCACCAGTTGCTTATTTA+TGG - chr1_4:75540051-75540070 Msa0185390:intron 40.0%
GGCACCAGTTGCTTATTTAT+GGG - chr1_4:75540052-75540071 Msa0185390:intron 40.0%
ACCAGTTGCTTATTTATGGG+AGG - chr1_4:75540055-75540074 Msa0185390:intron 40.0%
GACAAGATATCTGGCAAGTA+TGG - chr1_4:75540256-75540275 Msa0185390:intron 40.0%
TATGGGATCACTATCAACAG+AGG - chr1_4:75540274-75540293 Msa0185390:intron 40.0%
GGCAAAAACGGTTCCAATAT+TGG - chr1_4:75540340-75540359 Msa0185390:intron 40.0%
!! TGTTTTATTGCCGTTCTGGA+AGG - chr1_4:75540384-75540403 Msa0185390:intron 40.0%
TCGATTTCATCCTTCCAGAA+CGG + chr1_4:75540397-75540416 None:intergenic 40.0%
CTGAAACTTGTGCTTGTCAT+TGG + chr1_4:75540546-75540565 None:intergenic 40.0%
CAAACATCAAGATAGCTGCT+GGG + chr1_4:75540598-75540617 None:intergenic 40.0%
GATGTTTGCGTGGAATTTCA+AGG - chr1_4:75540610-75540629 Msa0185390:intron 40.0%
!!! CACTAGTTTTGGTAACACCA+TGG - chr1_4:75540690-75540709 Msa0185390:intron 40.0%
CATTTGGATGCGGCTTAATT+TGG - chr1_4:75540835-75540854 Msa0185390:intron 40.0%
!! AGTTTTGGTCCTCAAGCATT+TGG - chr1_4:75540873-75540892 Msa0185390:intron 40.0%
!! GTTTTGGTCCTCAAGCATTT+GGG - chr1_4:75540874-75540893 Msa0185390:intron 40.0%
CAATTGTACCCAAATGCTTG+AGG + chr1_4:75540885-75540904 None:intergenic 40.0%
TATATCCAACCTTGAGGACA+AGG - chr1_4:75540997-75541016 Msa0185390:intron 40.0%
GAAAAACAACCTTGTCCTCA+AGG + chr1_4:75541009-75541028 None:intergenic 40.0%
!!! GGACAAGGTTGTTTTTCTAG+CGG - chr1_4:75541012-75541031 Msa0185390:intron 40.0%
!!! AAGGTTGTTTTTCTAGCGGT+CGG - chr1_4:75541016-75541035 Msa0185390:intron 40.0%
GGAAATTAGATATGGGCCTT+AGG - chr1_4:75538884-75538903 Msa0185390:intron 40.0%
! TTACTCTCTCTATTGGCCTA+AGG + chr1_4:75538903-75538922 None:intergenic 40.0%
! GCTATCTAGCTTATAAGGTG+AGG + chr1_4:75541460-75541479 None:intergenic 40.0%
GTGCTTGGACACATATCAAT+TGG - chr1_4:75541504-75541523 Msa0185390:intron 40.0%
ATTTGAACCGCAGTAATCAG+TGG - chr1_4:75541528-75541547 Msa0185390:intron 40.0%
! TTTCAAGCCACTGATTACTG+CGG + chr1_4:75541538-75541557 None:intergenic 40.0%
AGTAATCAGTGGCTTGAAAG+TGG - chr1_4:75541539-75541558 Msa0185390:intron 40.0%
GTAATCAGTGGCTTGAAAGT+GGG - chr1_4:75541540-75541559 Msa0185390:intron 40.0%
!!! GTGGTGCTATGATAGGATTT+TGG - chr1_4:75541641-75541660 Msa0185390:intron 40.0%
TACTAGTCGATGTGGGATTT+GGG + chr1_4:75541680-75541699 None:intergenic 40.0%
ATACTAGTCGATGTGGGATT+TGG + chr1_4:75541681-75541700 None:intergenic 40.0%
! AAATCCCACATCGACTAGTA+TGG - chr1_4:75541680-75541699 Msa0185390:intron 40.0%
! AATCCCACATCGACTAGTAT+GGG - chr1_4:75541681-75541700 Msa0185390:intron 40.0%
GGATAACTGGTCAATGACAT+AGG + chr1_4:75541846-75541865 None:intergenic 40.0%
! CTGAATATTCAGAGCACTCT+TGG + chr1_4:75541880-75541899 None:intergenic 40.0%
! CTCTTGGTGGTTAATGACAT+AGG + chr1_4:75541918-75541937 None:intergenic 40.0%
! ATCTATGTTCAGAGCACTCT+TGG + chr1_4:75541934-75541953 None:intergenic 40.0%
TGGTACAGTCTTCACATATC+TGG + chr1_4:75542203-75542222 None:intergenic 40.0%
TCTCTACCTCAAGCTCAAAT+CGG + chr1_4:75542300-75542319 None:intergenic 40.0%
TTTGAGCTTGAGGTAGAGAT+TGG - chr1_4:75542301-75542320 Msa0185390:intron 40.0%
! TCCACCTCTTTCTGATAATG+AGG - chr1_4:75542330-75542349 Msa0185390:intron 40.0%
ACCTCATTATCAGAAAGAGG+TGG + chr1_4:75542334-75542353 None:intergenic 40.0%
AAACTAACAAGTCCAGGACT+AGG + chr1_4:75542982-75543001 None:intergenic 40.0%
GATTAGAGTTGAGAGATGAG+TGG - chr1_4:75543114-75543133 Msa0185390:intron 40.0%
! GTAGAGCATTTGCCAACATA+TGG - chr1_4:75543150-75543169 Msa0185390:intron 40.0%
AACTGTGTCAGACCATATGT+TGG + chr1_4:75543165-75543184 None:intergenic 40.0%
! TATGGTCTGACACAGTTTTC+GGG - chr1_4:75543168-75543187 Msa0185390:intron 40.0%
GGGTGGCCAATTTCAAAATT+GGG - chr1_4:75543366-75543385 Msa0185390:intron 40.0%
CTTAGCATAGGAGATCTGTA+TGG + chr1_4:75543707-75543726 None:intergenic 40.0%
!!! ACAAACGCCATTTTTGCATC+TGG - chr1_4:75543806-75543825 Msa0185390:intron 40.0%
CTTCTCTCCAGATGCAAAAA+TGG + chr1_4:75543816-75543835 None:intergenic 40.0%
! CATTTTTGCATCTGGAGAGA+AGG - chr1_4:75543814-75543833 Msa0185390:CDS 40.0%
!! TGAGTGTTCCTTTTAGCTAC+AGG - chr1_4:75543863-75543882 Msa0185390:CDS 40.0%
!! TGTTCCTTTTAGCTACAGGT+CGG - chr1_4:75543867-75543886 Msa0185390:CDS 40.0%
AAACGATCCACTTGTTCATC+AGG - chr1_4:75543896-75543915 Msa0185390:CDS 40.0%
AACGATCCACTTGTTCATCA+GGG - chr1_4:75543897-75543916 Msa0185390:CDS 40.0%
! AAACTTGTTCCTCTTCCTTC+TGG + chr1_4:75543968-75543987 None:intergenic 40.0%
AACAAGTTTCAGTGTACTGC+TGG - chr1_4:75543979-75543998 Msa0185390:intron 40.0%
!! GCAATGATTACTCTGGAGTT+TGG + chr1_4:75544008-75544027 None:intergenic 40.0%
GTGACATGCAATGATTACTC+TGG + chr1_4:75544015-75544034 None:intergenic 40.0%
AATGCTTCCTGGACATTCTT+AGG - chr1_4:75544050-75544069 Msa0185390:intron 40.0%
GTCGCTCATAAGTAATACCA+AGG - chr1_4:75544177-75544196 Msa0185390:intron 40.0%
GCTCATAAGTAATACCAAGG+TGG - chr1_4:75544180-75544199 Msa0185390:intron 40.0%
GCTGCTAAGTGTGTATTTCT+TGG + chr1_4:75544433-75544452 None:intergenic 40.0%
GCATTCAGTGAGTGTCATAT+TGG - chr1_4:75544541-75544560 Msa0185390:intron 40.0%
TTTCCAGGTTACTACTCTTC+TGG + chr1_4:75544659-75544678 None:intergenic 40.0%
GGTTACCTGTGAAACCAAAA+AGG - chr1_4:75544700-75544719 Msa0185390:intron 40.0%
AGAACAGTACCCATTCTGTT+TGG - chr1_4:75544735-75544754 Msa0185390:intron 40.0%
GCAGGAACTATCCTATGAAT+CGG - chr1_4:75544893-75544912 Msa0185390:intron 40.0%
TTATCCCACTAAGTGGAGTT+GGG + chr1_4:75545082-75545101 None:intergenic 40.0%
TTTATCCCACTAAGTGGAGT+TGG + chr1_4:75545083-75545102 None:intergenic 40.0%
TTTCTTTCCTCATGTTGTGC+AGG - chr1_4:75545317-75545336 Msa0185390:intron 40.0%
TTGGAAAAGGAAGTTACCCT+AGG + chr1_4:75545434-75545453 None:intergenic 40.0%
TGTGTCAGTACTACTAATCG+AGG - chr1_4:75545694-75545713 Msa0185390:intron 40.0%
GGGAGGCTAAGAAAAACTAT+AGG - chr1_4:75545772-75545791 Msa0185390:intron 40.0%
CCCTTCAAATGGGAAAAGAT+TGG - chr1_4:75545897-75545916 Msa0185390:intron 40.0%
!! TGTTGTGTAAGTCTGGTTCT+AGG + chr1_4:75545954-75545973 None:intergenic 40.0%
AACCAGACTTACACAACATC+TGG - chr1_4:75545956-75545975 Msa0185390:intron 40.0%
AACCAGATGTTGTGTAAGTC+TGG + chr1_4:75545961-75545980 None:intergenic 40.0%
AGATTCAGAATGATACCTGC+AGG + chr1_4:75546137-75546156 None:intergenic 40.0%
TGCAGGTATCATTCTGAATC+TGG - chr1_4:75546136-75546155 Msa0185390:intron 40.0%
GGTATCATTCTGAATCTGGT+TGG - chr1_4:75546140-75546159 Msa0185390:intron 40.0%
! TTATGGGCTTGAAGTTGATC+AGG - chr1_4:75546192-75546211 Msa0185390:intron 40.0%
TTGATGCATGCGTGAAACTT+TGG - chr1_4:75546254-75546273 Msa0185390:intron 40.0%
TGATGCATGCGTGAAACTTT+GGG - chr1_4:75546255-75546274 Msa0185390:intron 40.0%
ATCTCCCAAAACTGCTAAAG+CGG - chr1_4:75546482-75546501 Msa0185390:intron 40.0%
! CTATACCGCTTTAGCAGTTT+TGG + chr1_4:75546490-75546509 None:intergenic 40.0%
AGTTTACAATGTTCGAGAGG+GGG - chr1_4:75546782-75546801 Msa0185390:intron 40.0%
! TCTCTCATAGCCTTGAGATA+TGG - chr1_4:75546951-75546970 Msa0185390:intron 40.0%
TCGGGTGTTCCACATATATA+TGG - chr1_4:75547047-75547066 Msa0185390:intron 40.0%
GGGTCATATCACATTCATTG+TGG + chr1_4:75547194-75547213 None:intergenic 40.0%
GCTTCCCTTACTATACAAGT+CGG - chr1_4:75547237-75547256 Msa0185390:intron 40.0%
CCCTTACCATACAAATCTGT+TGG - chr1_4:75547272-75547291 Msa0185390:intron 40.0%
CCCAACAGATTTGTATGGTA+AGG + chr1_4:75547276-75547295 None:intergenic 40.0%
! CCGAGTTGTTTGATAATAGG+TGG + chr1_4:75547299-75547318 None:intergenic 40.0%
TATCTCTCATCTTACAAGCC+GGG - chr1_4:75547416-75547435 Msa0185390:CDS 40.0%
GTTGCCTCATAACCTAGTTT+AGG - chr1_4:75547456-75547475 Msa0185390:CDS 40.0%
!! GATAATGGACCTAAGGTCAA+AGG + chr1_4:75547516-75547535 None:intergenic 40.0%
AACAGTCTCTACGCTTACAA+GGG + chr1_4:75547653-75547672 None:intergenic 40.0%
AAACAGTCTCTACGCTTACA+AGG + chr1_4:75547654-75547673 None:intergenic 40.0%
TTTATTGAGGCTTGGCACAA+TGG + chr1_4:75547723-75547742 None:intergenic 40.0%
!! TCACTTTTGGGGATAATCGT+GGG + chr1_4:75547933-75547952 None:intergenic 40.0%
!! ATCACTTTTGGGGATAATCG+TGG + chr1_4:75547934-75547953 None:intergenic 40.0%
CAATTTCATGTCTGGCAAAG+TGG - chr1_4:75547989-75548008 Msa0185390:CDS 40.0%
! GTGGATTCAACTGTTTGCTA+CGG - chr1_4:75548008-75548027 Msa0185390:CDS 40.0%
! TTTGCTACGGCTTTATCAAC+TGG - chr1_4:75548021-75548040 Msa0185390:CDS 40.0%
! TTGCTACGGCTTTATCAACT+GGG - chr1_4:75548022-75548041 Msa0185390:CDS 40.0%
!! ACTGGTTCTATAGTACAAGG+CGG - chr1_4:75548194-75548213 Msa0185390:intron 40.0%
!! CAAGATGATGGAAACTGGCT+TGG - chr1_4:75537967-75537986 Msa0185390:three_prime_UTR 45.0%
! GCCAGTCTTCCCATTTTCTA+TGG + chr1_4:75538146-75538165 None:intergenic 45.0%
TCTTCTTCTTCTTGGGAGAG+TGG - chr1_4:75538189-75538208 Msa0185390:exon 45.0%
GATTATAGGGAGGAGTTACG+AGG - chr1_4:75538219-75538238 Msa0185390:CDS 45.0%
TAATAAGGGCCCGTTTGGAT+TGG + chr1_4:75538639-75538658 None:intergenic 45.0%
ACTAGTAATAAGGGCCCGTT+TGG + chr1_4:75538644-75538663 None:intergenic 45.0%
GCTTGAAGGAAGATGGTGAT+AGG - chr1_4:75538863-75538882 Msa0185390:intron 45.0%
!!! TGTTAGTACCCTTTTAGGGC+CGG - chr1_4:75539089-75539108 Msa0185390:intron 45.0%
TTTGCATGAACAAGGCAGGT+CGG + chr1_4:75539254-75539273 None:intergenic 45.0%
! ATGGTTTGCATGAACAAGGC+AGG + chr1_4:75539258-75539277 None:intergenic 45.0%
! TGCCTTGTTCATGCAAACCA+TGG - chr1_4:75539257-75539276 Msa0185390:intron 45.0%
! AGCCATGGTTTGCATGAACA+AGG + chr1_4:75539262-75539281 None:intergenic 45.0%
CGAAGAGATTCAACGTGCTT+TGG - chr1_4:75539356-75539375 Msa0185390:intron 45.0%
! TTTGCCGGAGCAACAACTTT+TGG - chr1_4:75539473-75539492 Msa0185390:intron 45.0%
! TTGCCGGAGCAACAACTTTT+GGG - chr1_4:75539474-75539493 Msa0185390:intron 45.0%
TGAACATGCGAACACGAGAA+CGG + chr1_4:75539530-75539549 None:intergenic 45.0%
CAAACCACGCAACTGTGAAT+TGG - chr1_4:75539548-75539567 Msa0185390:intron 45.0%
! GTCGCGTTCAGGTTACAAAA+TGG - chr1_4:75539614-75539633 Msa0185390:intron 45.0%
CCTTGTCGATATGGTAGAAC+CGG + chr1_4:75539757-75539776 None:intergenic 45.0%
AACTGAGGTGACACCAGAAA+AGG - chr1_4:75539821-75539840 Msa0185390:intron 45.0%
GGAACACAGAGCAATTGCTT+TGG - chr1_4:75539869-75539888 Msa0185390:intron 45.0%
ACACAGAGCAATTGCTTTGG+GGG - chr1_4:75539872-75539891 Msa0185390:intron 45.0%
AACCATCCAATTCTGTCGGA+AGG - chr1_4:75539903-75539922 Msa0185390:intron 45.0%
TTCCTTCCGACAGAATTGGA+TGG + chr1_4:75539908-75539927 None:intergenic 45.0%
TCCAATTCTGTCGGAAGGAA+TGG - chr1_4:75539908-75539927 Msa0185390:intron 45.0%
TCCATTCCTTCCGACAGAAT+TGG + chr1_4:75539912-75539931 None:intergenic 45.0%
ATTCTGTCGGAAGGAATGGA+TGG - chr1_4:75539912-75539931 Msa0185390:CDS 45.0%
GAAACGGAAATTGAGAACCG+TGG - chr1_4:75539998-75540017 Msa0185390:CDS 45.0%
GCCTCCCATAAATAAGCAAC+TGG + chr1_4:75540059-75540078 None:intergenic 45.0%
!! AGTCACTGAGCACTGGATTT+GGG - chr1_4:75540090-75540109 Msa0185390:intron 45.0%
GTGAACACTAAAGGAAAGCC+AGG - chr1_4:75540116-75540135 Msa0185390:intron 45.0%
AACACTAAAGGAAAGCCAGG+CGG - chr1_4:75540119-75540138 Msa0185390:intron 45.0%
GATGTCGGTGACAAGATATC+TGG - chr1_4:75540247-75540266 Msa0185390:intron 45.0%
ACTTGTGCTTGTCATTGGCA+TGG + chr1_4:75540541-75540560 None:intergenic 45.0%
GCAAACATCAAGATAGCTGC+TGG + chr1_4:75540599-75540618 None:intergenic 45.0%
CAGCTATCTTGATGTTTGCG+TGG - chr1_4:75540600-75540619 Msa0185390:intron 45.0%
!!! TTGCATTTTCTGGGATCCCA+TGG + chr1_4:75540710-75540729 None:intergenic 45.0%
GGTCTTCAAGCATTTGGATG+CGG - chr1_4:75540825-75540844 Msa0185390:CDS 45.0%
TCCAGCATCACTGTCTTCAA+TGG - chr1_4:75540908-75540927 Msa0185390:intron 45.0%
ACCATTGAAGACAGTGATGC+TGG + chr1_4:75540912-75540931 None:intergenic 45.0%
AACAACCTTGTCCTCAAGGT+TGG + chr1_4:75541005-75541024 None:intergenic 45.0%
!!! TGTTAGTACCCTTTTAGGGC+CGG - chr1_4:75539089-75539108 Msa0185390:intron 45.0%
TTGAAAGTGGGTACCTATGG+AGG - chr1_4:75541552-75541571 Msa0185390:intron 45.0%
TGAAAGTGGGTACCTATGGA+GGG - chr1_4:75541553-75541572 Msa0185390:intron 45.0%
! CGTTTTACAATACAACCGCC+AGG - chr1_4:75541602-75541621 Msa0185390:intron 45.0%
CATCCCATACTAGTCGATGT+GGG + chr1_4:75541687-75541706 None:intergenic 45.0%
ATCGACTAGTATGGGATGCT+CGG - chr1_4:75541689-75541708 Msa0185390:intron 45.0%
! TATGTTCAGAGCACTCTTGG+TGG + chr1_4:75541931-75541950 None:intergenic 45.0%
TCTTCTCACGTCGAGCATTT+GGG + chr1_4:75542233-75542252 None:intergenic 45.0%
ATCTTCTCACGTCGAGCATT+TGG + chr1_4:75542234-75542253 None:intergenic 45.0%
!! GAAAAGCCGATTTGAGCTTG+AGG - chr1_4:75542291-75542310 Msa0185390:intron 45.0%
!! ATGAGGTTTGGTGGGAATTG+CGG - chr1_4:75542347-75542366 Msa0185390:intron 45.0%
AACACCTTGTGAACTGGTAG+AGG - chr1_4:75542934-75542953 Msa0185390:intron 45.0%
AAAGCCTCTACCAGTTCACA+AGG + chr1_4:75542941-75542960 None:intergenic 45.0%
TCACTCTATGTTGTCTGTCC+TGG - chr1_4:75543337-75543356 Msa0185390:intron 45.0%
ATGTTGTCTGTCCTGGATAG+CGG - chr1_4:75543344-75543363 Msa0185390:intron 45.0%
GGGGTGGCCAATTTCAAAAT+TGG - chr1_4:75543365-75543384 Msa0185390:intron 45.0%
AAAATTGGGATAGCAGGGTG+TGG - chr1_4:75543380-75543399 Msa0185390:intron 45.0%
AAATTGGGATAGCAGGGTGT+GGG - chr1_4:75543381-75543400 Msa0185390:intron 45.0%
AAACAAGGCCAAACTCCCTT+GGG - chr1_4:75543657-75543676 Msa0185390:intron 45.0%
!!! CTAGTGTTTTTTGCCCCCAA+GGG + chr1_4:75543675-75543694 None:intergenic 45.0%
!!! TCTAGTGTTTTTTGCCCCCA+AGG + chr1_4:75543676-75543695 None:intergenic 45.0%
TGGGGGCAAAAAACACTAGA+TGG - chr1_4:75543676-75543695 Msa0185390:intron 45.0%
AAGTCCGACCTGTAGCTAAA+AGG + chr1_4:75543874-75543893 None:intergenic 45.0%
AGAAAGCCCTGATGAACAAG+TGG + chr1_4:75543906-75543925 None:intergenic 45.0%
AAGCATTAGCTCATCCAGGA+CGG + chr1_4:75544037-75544056 None:intergenic 45.0%
CTCTGTTCCTAAGAATGTCC+AGG + chr1_4:75544060-75544079 None:intergenic 45.0%
! GTTACACGGCGATCTAAAGT+TGG + chr1_4:75544206-75544225 None:intergenic 45.0%
CACAGTTCCTCACAGTTACA+CGG + chr1_4:75544220-75544239 None:intergenic 45.0%
CGATGTGTAGATGAAGCGTA+AGG - chr1_4:75544379-75544398 Msa0185390:intron 45.0%
AGAGATTGAAACCTAGGGCT+AGG - chr1_4:75544922-75544941 Msa0185390:intron 45.0%
ACTAAGTGGAGTTGGGTACA+TGG + chr1_4:75545075-75545094 None:intergenic 45.0%
ATGTACCCAACTCCACTTAG+TGG - chr1_4:75545074-75545093 Msa0185390:intron 45.0%
TGTACCCAACTCCACTTAGT+GGG - chr1_4:75545075-75545094 Msa0185390:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG + chr1_4:75545089-75545108 None:intergenic 45.0%
CCACTTAGTGGGATAAAGCT+TGG - chr1_4:75545086-75545105 Msa0185390:intron 45.0%
TTTAGGAGGCTGCCTTACTA+CGG - chr1_4:75545159-75545178 Msa0185390:intron 45.0%
CTTACTACGGCAGATGACTT+GGG - chr1_4:75545172-75545191 Msa0185390:intron 45.0%
AAAGCTACCTGCACAACATG+AGG + chr1_4:75545327-75545346 None:intergenic 45.0%
AAGTAGGCTACCCCTTCAAA+TGG - chr1_4:75545886-75545905 Msa0185390:intron 45.0%
AGTAGGCTACCCCTTCAAAT+GGG - chr1_4:75545887-75545906 Msa0185390:intron 45.0%
CCTCAATAATGTGGGAGACT+GGG + chr1_4:75546663-75546682 None:intergenic 45.0%
ACCTCAATAATGTGGGAGAC+TGG + chr1_4:75546664-75546683 None:intergenic 45.0%
!! CTAAATAGGCACCGAAGAAG+AGG - chr1_4:75546740-75546759 Msa0185390:intron 45.0%
CCGCAATTAAGGTGGTTAAG+GGG + chr1_4:75546866-75546885 None:intergenic 45.0%
CCCCTTAACCACCTTAATTG+CGG - chr1_4:75546863-75546882 Msa0185390:intron 45.0%
GCCGCAATTAAGGTGGTTAA+GGG + chr1_4:75546867-75546886 None:intergenic 45.0%
TGCCGCAATTAAGGTGGTTA+AGG + chr1_4:75546868-75546887 None:intergenic 45.0%
CACCTTAATTGCGGCACATA+GGG - chr1_4:75546872-75546891 Msa0185390:intron 45.0%
! GGTGTTGGATCCTACAATGA+AGG + chr1_4:75546901-75546920 None:intergenic 45.0%
AGGATCCAACACCATAGTGT+TGG - chr1_4:75546908-75546927 Msa0185390:intron 45.0%
TACAGCCAACACTATGGTGT+TGG + chr1_4:75546916-75546935 None:intergenic 45.0%
!! CACCATAGTGTTGGCTGTAA+AGG - chr1_4:75546917-75546936 Msa0185390:intron 45.0%
CTCCTTTACAGCCAACACTA+TGG + chr1_4:75546922-75546941 None:intergenic 45.0%
!! TAGTGTTGGCTGTAAAGGAG+TGG - chr1_4:75546922-75546941 Msa0185390:intron 45.0%
!! AGTGTTGGCTGTAAAGGAGT+GGG - chr1_4:75546923-75546942 Msa0185390:intron 45.0%
TATCATTGTTGAGAGTGGGG+AGG - chr1_4:75547010-75547029 Msa0185390:intron 45.0%
! GGAGGTTTTCTCGGTTTCTT+CGG - chr1_4:75547028-75547047 Msa0185390:intron 45.0%
! GAGGTTTTCTCGGTTTCTTC+GGG - chr1_4:75547029-75547048 Msa0185390:intron 45.0%
AGGCGCACAAAAAACAATCG+CGG + chr1_4:75547105-75547124 None:intergenic 45.0%
ATTCACGACGAATGAGTGCA+AGG + chr1_4:75547125-75547144 None:intergenic 45.0%
TCTTACAAGCCGGGTTTAGA+AGG - chr1_4:75547425-75547444 Msa0185390:CDS 45.0%
TGTGGCGTATAGTTATGGAG+TGG + chr1_4:75547630-75547649 None:intergenic 45.0%
! AAGGGTGTGGCGTATAGTTA+TGG + chr1_4:75547635-75547654 None:intergenic 45.0%
AAGCGTAGAGACTGTTTCCA+TGG - chr1_4:75547657-75547676 Msa0185390:intron 45.0%
! GTGGTCATGGATTATAGCCA+TGG + chr1_4:75547677-75547696 None:intergenic 45.0%
! CGAACCCACAGGAATTTTAC+TGG - chr1_4:75548176-75548195 Msa0185390:intron 45.0%
CTATAGTACAAGGCGGTTCA+AGG - chr1_4:75548201-75548220 Msa0185390:CDS 45.0%
!! ATGGAGGGTGCTTCTTCATA+AGG - chr1_4:75548404-75548423 Msa0185390:CDS 45.0%
!! TGGAGGGTGCTTCTTCATAA+GGG - chr1_4:75548405-75548424 Msa0185390:CDS 45.0%
!! GATGTTGAGGATGATGGGAG+AGG + chr1_4:75537849-75537868 None:intergenic 50.0%
!!! ATGGGAAGACTGGCTTTTGG+AGG - chr1_4:75538152-75538171 Msa0185390:three_prime_UTR 50.0%
TCAGCAAAGTCTCTTGCTGC+CGG + chr1_4:75539111-75539130 None:intergenic 50.0%
TTTGCTGAGGAGCTTTGCTC+TGG - chr1_4:75539123-75539142 Msa0185390:intron 50.0%
!! GTTGAAACACACTGGCTCAG+TGG - chr1_4:75539404-75539423 Msa0185390:intron 50.0%
TTCTCAGTGTGGACGTTTGC+CGG - chr1_4:75539458-75539477 Msa0185390:intron 50.0%
ATCGCCAATTCACAGTTGCG+TGG + chr1_4:75539555-75539574 None:intergenic 50.0%
ACTGTGAATTGGCGATGCAG+TGG - chr1_4:75539559-75539578 Msa0185390:intron 50.0%
CTGTGAATTGGCGATGCAGT+GGG - chr1_4:75539560-75539579 Msa0185390:intron 50.0%
CTGGCCCATCAAGAAGATGA+TGG - chr1_4:75539672-75539691 Msa0185390:intron 50.0%
! ATCTAACCCGAGACCGGTTT+GGG - chr1_4:75539704-75539723 Msa0185390:intron 50.0%
TGACCTGAAACTCCCCAAAC+CGG + chr1_4:75539720-75539739 None:intergenic 50.0%
CCGGTTCTACCATATCGACA+AGG - chr1_4:75539754-75539773 Msa0185390:intron 50.0%
ACACTAGAGGTTGACGTCAG+CGG + chr1_4:75539789-75539808 None:intergenic 50.0%
GGTGACACCAGAAAAGGAAG+AGG - chr1_4:75539827-75539846 Msa0185390:intron 50.0%
GACACCAGAAAAGGAAGAGG+CGG - chr1_4:75539830-75539849 Msa0185390:intron 50.0%
ACACCAGAAAAGGAAGAGGC+GGG - chr1_4:75539831-75539850 Msa0185390:intron 50.0%
GGCGGGAGAGAATATGAAGA+AGG - chr1_4:75539848-75539867 Msa0185390:intron 50.0%
!! AGAGCAATTGCTTTGGGGGA+GGG - chr1_4:75539876-75539895 Msa0185390:intron 50.0%
GAAGACGGTAACAGGATGGA+CGG + chr1_4:75539963-75539982 None:intergenic 50.0%
GTCCATCCTGTTACCGTCTT+CGG - chr1_4:75539962-75539981 Msa0185390:CDS 50.0%
TTCCGAAGACGGTAACAGGA+TGG + chr1_4:75539967-75539986 None:intergenic 50.0%
TCGATTCCGAAGACGGTAAC+AGG + chr1_4:75539971-75539990 None:intergenic 50.0%
ATCCAGTGCTCAGTGACTGT+GGG + chr1_4:75540088-75540107 None:intergenic 50.0%
AATCCAGTGCTCAGTGACTG+TGG + chr1_4:75540089-75540108 None:intergenic 50.0%
!! CAGTCACTGAGCACTGGATT+TGG - chr1_4:75540089-75540108 Msa0185390:intron 50.0%
TAAAGGAAAGCCAGGCGGAA+AGG - chr1_4:75540124-75540143 Msa0185390:intron 50.0%
AGCTCCTTTGACCAAGTGTC+CGG + chr1_4:75540218-75540237 None:intergenic 50.0%
AGATCAGCGTTTCCAGCCTT+GGG - chr1_4:75540564-75540583 Msa0185390:intron 50.0%
! TGGGAATTTGTTCCCAAGGC+TGG + chr1_4:75540579-75540598 None:intergenic 50.0%
! CTGCTGGGAATTTGTTCCCA+AGG + chr1_4:75540583-75540602 None:intergenic 50.0%
GTTGGGGCTGCTTATGAACT+GGG - chr1_4:75540740-75540759 Msa0185390:intron 50.0%
GGCTCTCCCAGTAGCAAAAA+TGG - chr1_4:75540964-75540983 Msa0185390:intron 50.0%
TTCTAGCGGTCGGTGATGAT+AGG - chr1_4:75541026-75541045 Msa0185390:intron 50.0%
TCAGCAAAGTCTCTTGCTGC+CGG + chr1_4:75539111-75539130 None:intergenic 50.0%
TTTGCTGAGGAGCTTTGCTC+TGG - chr1_4:75539123-75539142 Msa0185390:intron 50.0%
GGAAGATGGCCAGTTGAATG+AGG - chr1_4:75541406-75541425 Msa0185390:intron 50.0%
GGGAGAGTTCATTGAGTGCT+TGG - chr1_4:75541489-75541508 Msa0185390:intron 50.0%
GGCTTGAAAGTGGGTACCTA+TGG - chr1_4:75541549-75541568 Msa0185390:intron 50.0%
GAAAGTGGGTACCTATGGAG+GGG - chr1_4:75541554-75541573 Msa0185390:intron 50.0%
AAAGTGGGTACCTATGGAGG+GGG - chr1_4:75541555-75541574 Msa0185390:intron 50.0%
!! CTAAGGGGTGGTGCTATGAT+AGG - chr1_4:75541634-75541653 Msa0185390:intron 50.0%
GCATCCCATACTAGTCGATG+TGG + chr1_4:75541688-75541707 None:intergenic 50.0%
GGGTGAGCTATCAGGATAAC+TGG + chr1_4:75541859-75541878 None:intergenic 50.0%
GTTGAGAGATGAGTGGAGAC+TGG - chr1_4:75543121-75543140 Msa0185390:intron 50.0%
TGTTGTCTGTCCTGGATAGC+GGG - chr1_4:75543345-75543364 Msa0185390:intron 50.0%
CAAACAAGGCCAAACTCCCT+TGG - chr1_4:75543656-75543675 Msa0185390:intron 50.0%
AACAAGGCCAAACTCCCTTG+GGG - chr1_4:75543658-75543677 Msa0185390:intron 50.0%
! TTTTTGCCCCCAAGGGAGTT+TGG + chr1_4:75543668-75543687 None:intergenic 50.0%
ATCATTGCATGTCACCGTCC+TGG - chr1_4:75544020-75544039 Msa0185390:intron 50.0%
!! CAGGAAGCATTAGCTCATCC+AGG + chr1_4:75544041-75544060 None:intergenic 50.0%
CTGGATGAGCTAATGCTTCC+TGG - chr1_4:75544039-75544058 Msa0185390:intron 50.0%
! CGATCTAAAGTTGGCCACCT+TGG + chr1_4:75544197-75544216 None:intergenic 50.0%
TAGATCGCCGTGTAACTGTG+AGG - chr1_4:75544210-75544229 Msa0185390:intron 50.0%
ATGGTGTATCAAGTGCCACG+AGG - chr1_4:75544501-75544520 Msa0185390:intron 50.0%
CTACTCTTCTGGCGATGTTC+AGG + chr1_4:75544648-75544667 None:intergenic 50.0%
TCGCCAGAAGAGTAGTAACC+TGG - chr1_4:75544653-75544672 Msa0185390:intron 50.0%
! AAAAGTGTGGTCCTAGCCCT+AGG + chr1_4:75544936-75544955 None:intergenic 50.0%
CCAAGTCATCTGCCGTAGTA+AGG + chr1_4:75545174-75545193 None:intergenic 50.0%
CCTTACTACGGCAGATGACT+TGG - chr1_4:75545171-75545190 Msa0185390:intron 50.0%
AAAGAGTTAGCGGTAGAGGG+AGG - chr1_4:75545755-75545774 Msa0185390:intron 50.0%
ACGCATGCATCAACGATGAC+TGG + chr1_4:75546247-75546266 None:intergenic 50.0%
CCCAGTCTCCCACATTATTG+AGG - chr1_4:75546660-75546679 Msa0185390:intron 50.0%
ACAATGTTCGAGAGGGGGTA+CGG - chr1_4:75546787-75546806 Msa0185390:intron 50.0%
GAGGGACTTGTCCACTTGAT+TGG - chr1_4:75546835-75546854 Msa0185390:intron 50.0%
GGACTTGTCCACTTGATTGG+TGG - chr1_4:75546838-75546857 Msa0185390:intron 50.0%
CCTATGTGCCGCAATTAAGG+TGG + chr1_4:75546874-75546893 None:intergenic 50.0%
CCACCTTAATTGCGGCACAT+AGG - chr1_4:75546871-75546890 Msa0185390:intron 50.0%
CTTAATTGCGGCACATAGGG+CGG - chr1_4:75546875-75546894 Msa0185390:intron 50.0%
! TGAGAGTGGGGAGGTTTTCT+CGG - chr1_4:75547019-75547038 Msa0185390:intron 50.0%
GGTGGCCCAACAGATTTGTA+TGG + chr1_4:75547281-75547300 None:intergenic 50.0%
TCTCTACGCTTACAAGGGTG+TGG + chr1_4:75547648-75547667 None:intergenic 50.0%
!! CTTTTGGGGATAATCGTGGG+AGG + chr1_4:75547930-75547949 None:intergenic 50.0%
GTTCCACGAGTTTCAGCTAC+TGG - chr1_4:75548124-75548143 Msa0185390:CDS 50.0%
GAACCAGTAGCTGAAACTCG+TGG + chr1_4:75548130-75548149 None:intergenic 50.0%
AAATTCCTGTGGGTTCGCAC+AGG + chr1_4:75548173-75548192 None:intergenic 50.0%
!! GGAGGGTGCTTCTTCATAAG+GGG - chr1_4:75548406-75548425 Msa0185390:CDS 50.0%
TCTTGCTGCCGGCCCTAAAA+GGG + chr1_4:75539100-75539119 None:intergenic 55.0%
GGCAGCAAGAGACTTTGCTG+AGG - chr1_4:75539110-75539129 Msa0185390:intron 55.0%
TTTGCTGAGGAGTCGCGTTC+AGG - chr1_4:75539603-75539622 Msa0185390:intron 55.0%
CAGGTCATCTAACCCGAGAC+CGG - chr1_4:75539698-75539717 Msa0185390:intron 55.0%
CATCTAACCCGAGACCGGTT+TGG - chr1_4:75539703-75539722 Msa0185390:intron 55.0%
!! TCTAACCCGAGACCGGTTTG+GGG - chr1_4:75539705-75539724 Msa0185390:intron 55.0%
AAACTCCCCAAACCGGTCTC+GGG + chr1_4:75539713-75539732 None:intergenic 55.0%
GAAACTCCCCAAACCGGTCT+CGG + chr1_4:75539714-75539733 None:intergenic 55.0%
!! AGACCGGTTTGGGGAGTTTC+AGG - chr1_4:75539714-75539733 Msa0185390:intron 55.0%
! TCTCCCGCCTCTTCCTTTTC+TGG + chr1_4:75539837-75539856 None:intergenic 55.0%
!! CAGAGCAATTGCTTTGGGGG+AGG - chr1_4:75539875-75539894 Msa0185390:intron 55.0%
CCACGAAGCTAGTACTCCCA+CGG + chr1_4:75540018-75540037 None:intergenic 55.0%
!! CGTGGGAGTACTAGCTTCGT+GGG - chr1_4:75540016-75540035 Msa0185390:CDS 55.0%
TCCAGTGCTCAGTGACTGTG+GGG + chr1_4:75540087-75540106 None:intergenic 55.0%
TCCTTTGACCAAGTGTCCGG+CGG + chr1_4:75540215-75540234 None:intergenic 55.0%
GGAGCTCGAGCAAACGATGT+CGG - chr1_4:75540232-75540251 Msa0185390:intron 55.0%
CAGATCAGCGTTTCCAGCCT+TGG - chr1_4:75540563-75540582 Msa0185390:intron 55.0%
GGTTGGGGCTGCTTATGAAC+TGG - chr1_4:75540739-75540758 Msa0185390:intron 55.0%
GGGCTGCTTATGAACTGGGT+GGG - chr1_4:75540744-75540763 Msa0185390:intron 55.0%
TCTTGCTGCCGGCCCTAAAA+GGG + chr1_4:75539100-75539119 None:intergenic 55.0%
GGCAGCAAGAGACTTTGCTG+AGG - chr1_4:75539110-75539129 Msa0185390:intron 55.0%
AAGTGGGTACCTATGGAGGG+GGG - chr1_4:75541556-75541575 Msa0185390:intron 55.0%
CAATACAACCGCCAGGACGT+CGG - chr1_4:75541609-75541628 Msa0185390:intron 55.0%
GACTAGTATGGGATGCTCGG+TGG - chr1_4:75541692-75541711 Msa0185390:intron 55.0%
!! GGGAGGGTTCCAAAAGTGCT+TGG - chr1_4:75541759-75541778 Msa0185390:intron 55.0%
GCACTCTTGGGTGAGCTATC+AGG + chr1_4:75541867-75541886 None:intergenic 55.0%
TCTCACGTCGAGCATTTGGG+CGG + chr1_4:75542230-75542249 None:intergenic 55.0%
GTTGTCTGTCCTGGATAGCG+GGG - chr1_4:75543346-75543365 Msa0185390:intron 55.0%
!! GGGAGTTTGGCCTTGTTTGC+AGG + chr1_4:75543655-75543674 None:intergenic 55.0%
ACAAGGCCAAACTCCCTTGG+GGG - chr1_4:75543659-75543678 Msa0185390:intron 55.0%
! CAGTGTGTCGTTGTTCCTCG+TGG + chr1_4:75544519-75544538 None:intergenic 55.0%
CACGAGGAACAACGACACAC+TGG - chr1_4:75544517-75544536 Msa0185390:intron 55.0%
TTGCATATTGGGACGCCTGC+AGG - chr1_4:75546119-75546138 Msa0185390:intron 55.0%
! CAATGTTCGAGAGGGGGTAC+GGG - chr1_4:75546788-75546807 Msa0185390:intron 55.0%
! AATGTTCGAGAGGGGGTACG+GGG - chr1_4:75546789-75546808 Msa0185390:intron 55.0%
!! AAGGGGCACCACCAATCAAG+TGG + chr1_4:75546849-75546868 None:intergenic 55.0%
CGCCCTATGTGCCGCAATTA+AGG + chr1_4:75546877-75546896 None:intergenic 55.0%
CATAGGGCGGCCTTCATTGT+AGG - chr1_4:75546888-75546907 Msa0185390:intron 55.0%
TGAGGCTTGGCACAATGGCA+AGG + chr1_4:75547718-75547737 None:intergenic 55.0%
TAGGGAGGAGTTACGAGGCG+AGG - chr1_4:75538224-75538243 Msa0185390:CDS 60.0%
CTCTTGCTGCCGGCCCTAAA+AGG + chr1_4:75539101-75539120 None:intergenic 60.0%
GATGCAGTGGGCACGTGATG+TGG - chr1_4:75539572-75539591 Msa0185390:intron 60.0%
AGTGGGCACGTGATGTGGAG+CGG - chr1_4:75539577-75539596 Msa0185390:intron 60.0%
!! TGTGGAGCGGGAGTTTGCTG+AGG - chr1_4:75539590-75539609 Msa0185390:intron 60.0%
TCGTTCGCAGAAGCAGTCGC+TGG - chr1_4:75539653-75539672 Msa0185390:intron 60.0%
GACGGAACCGCCAAAGACGA+AGG + chr1_4:75539945-75539964 None:intergenic 60.0%
!! CCGTGGGAGTACTAGCTTCG+TGG - chr1_4:75540015-75540034 Msa0185390:CDS 60.0%
TCCCCACAGTCACTGAGCAC+TGG - chr1_4:75540083-75540102 Msa0185390:intron 60.0%
GGGGCTGCTTATGAACTGGG+TGG - chr1_4:75540743-75540762 Msa0185390:intron 60.0%
CTCTTGCTGCCGGCCCTAAA+AGG + chr1_4:75539101-75539120 None:intergenic 60.0%
TCGAGCATTTGGGCGGCAAG+TGG + chr1_4:75542223-75542242 None:intergenic 60.0%
AATTGGCCACCCCGCTATCC+AGG + chr1_4:75543358-75543377 None:intergenic 60.0%
GTGGGCACGTGATGTGGAGC+GGG - chr1_4:75539578-75539597 Msa0185390:intron 65.0%
ACAGTGCGCTCCTTTCCGCC+TGG + chr1_4:75540137-75540156 None:intergenic 65.0%
! CAAGTGTCCGGCGGCTTTGG+TGG + chr1_4:75540206-75540225 None:intergenic 65.0%
CACCAAAGCCGCCGGACACT+TGG - chr1_4:75540204-75540223 Msa0185390:intron 65.0%
GACCAAGTGTCCGGCGGCTT+TGG + chr1_4:75540209-75540228 None:intergenic 65.0%
GCCGCCGGACACTTGGTCAA+AGG - chr1_4:75540211-75540230 Msa0185390:intron 65.0%
ACCTATGGAGGGGGGCTGAC+TGG - chr1_4:75541564-75541583 Msa0185390:intron 65.0%
TCCAGTCAGCCCCCCTCCAT+AGG + chr1_4:75541568-75541587 None:intergenic 65.0%
TGGAGGGGGGCTGACTGGAA+AGG - chr1_4:75541569-75541588 Msa0185390:intron 65.0%
CCTTAGAGCCGACGTCCTGG+CGG + chr1_4:75541620-75541639 None:intergenic 65.0%
!! CGCCAGGACGTCGGCTCTAA+GGG - chr1_4:75541618-75541637 Msa0185390:intron 65.0%
!! GCCAGGACGTCGGCTCTAAG+GGG - chr1_4:75541619-75541638 Msa0185390:intron 65.0%
ACCCCTTAGAGCCGACGTCC+TGG + chr1_4:75541623-75541642 None:intergenic 65.0%
!! AGGACGTCGGCTCTAAGGGG+TGG - chr1_4:75541622-75541641 Msa0185390:intron 65.0%
!! GTCTGTCCTGGATAGCGGGG+TGG - chr1_4:75543349-75543368 Msa0185390:intron 65.0%
GCAGACCTGTGCGAACCCAC+AGG - chr1_4:75548165-75548184 Msa0185390:CDS 65.0%
CACGCCACCACCAAAGCCGC+CGG - chr1_4:75540196-75540215 Msa0185390:intron 70.0%
! GTGTCCGGCGGCTTTGGTGG+TGG + chr1_4:75540203-75540222 None:intergenic 70.0%
!! CCGCCAGGACGTCGGCTCTA+AGG - chr1_4:75541617-75541636 Msa0185390:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 75537745 75548442 75537745 ID=Msa0185390;Name=Msa0185390
chr1_4 mRNA 75537745 75548442 75537745 ID=Msa0185390-mRNA-1;Parent=Msa0185390;Name=Msa0185390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.71|0.75|1|0.42|0.5|8|458|424
chr1_4 exon 75537745 75538271 75537745 ID=Msa0185390-mRNA-1:exon:25729;Parent=Msa0185390-mRNA-1
chr1_4 exon 75539911 75540046 75539911 ID=Msa0185390-mRNA-1:exon:25728;Parent=Msa0185390-mRNA-1
chr1_4 exon 75540751 75540848 75540751 ID=Msa0185390-mRNA-1:exon:25727;Parent=Msa0185390-mRNA-1
chr1_4 exon 75542958 75543072 75542958 ID=Msa0185390-mRNA-1:exon:25726;Parent=Msa0185390-mRNA-1
chr1_4 exon 75543810 75543983 75543810 ID=Msa0185390-mRNA-1:exon:25725;Parent=Msa0185390-mRNA-1
chr1_4 exon 75547397 75547482 75547397 ID=Msa0185390-mRNA-1:exon:25724;Parent=Msa0185390-mRNA-1
chr1_4 exon 75547834 75548186 75547834 ID=Msa0185390-mRNA-1:exon:25723;Parent=Msa0185390-mRNA-1
chr1_4 exon 75548199 75548442 75548199 ID=Msa0185390-mRNA-1:exon:25722;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75548199 75548442 75548199 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75547834 75548186 75547834 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75547397 75547482 75547397 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75543810 75543983 75543810 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75542958 75543072 75542958 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75540751 75540848 75540751 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75539911 75540046 75539911 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 CDS 75538203 75538271 75538203 ID=Msa0185390-mRNA-1:cds;Parent=Msa0185390-mRNA-1
chr1_4 three_prime_UTR 75537745 75538202 75537745 ID=Msa0185390-mRNA-1:three_prime_utr;Parent=Msa0185390-mRNA-1
Gene Sequence

>Msa0185390

ATGAGCTCATCAATTCTATTATCATCATCCAACAATTTCATCTTATTTAAACAACACCACAAACTTGTATTATCATCATCATCATCCAACTCTAATAACTTCCTCTCCCATCATCCTCAACATCTTTCATTTCAAAACCAACGTTTTACTACCTTCATTTCAAAAGCCAAAAACCATAAAAACAAGAAAAACAGTACCACTTGGTGGCAGAAATTTTTTCAACAAGATGATGGAAACTGGCTTGATGATATGGTTGAAGAGGATGTTGAATTTGAAGTGGAAGAAGAACAAGAATTGTCTGAAGAAGAAAAGTTCGAAGCATGGAAGCAAAGAGCAGAAGCTATTATAGATATAAGGGAAGCACAAGAAGATAGGAAGAATCAAGACCATAGAAAATGGGAAGACTGGCTTTTGGAGGATGACAGCAGTAGTTCTTCTTCTTCTTGGGAGAGTGGAATAAAAGATTATAGGGAGGAGTTACGAGGCGAGGATGATGATTTCAACGAAAATAACGGGGTTGTACAGTCTGTTAAGTATTTGATTTTTGGAAGAGAAGATGGTGGTGATAATGATGATGATATGCTTTATGAAGACCGTGCTAAATTTTTGGGAGTGTTGATTATTATACCTTGGGCAATGGATTTTCTAGTTCATGACTATGTACTCATGCCTTTTTTAGACAGATATGTGAAGACTGTACCACTTGCCGCCCAAATGCTCGACGTGAGAAGATATCAAAAACTTCAAATGATTGAGGAATTAAAAACTGAGAAAAGCCGATTTGAGCTTGAGGTAGAGATTGGTAAATCTCCACCTCTTTCTGATAATGAGGTTTGGTGGGAATTGCGGAATAAAGCATTAGAGTTGAGAGATGAGTGGAGACTGGAGAATCGTAGAGCATTTGCCAACATATGGTCTGACACAGTTTTCGGGATCTCTTTATTTATTCTTTTGTACTTCAATAAGAGTAAAGTAGCTTTGCTCAAATTTACTGGTTATAAAATAATAAACAATATTTCTGATACTGGGAAGGCGTTTCTTATTATACTTATCACAGATATTTTCCTAGGGTATCATTCTGAATCTGGTTGGCAAACTCTGATAGAGATAATTGTCGAGCATTATGGGCTTGAAGTTGATCAGGCCGCCATTACTATTTTTGTTTGCTTTGTACCAGTCATCGTTGATGCATGCGTGAAACTTTGGCTGTTCAAATTCCTCCCACGATTATCCCCAAAAGTGATGAGTATATTTCAAGAAATGAAGCGTCACTAG

Protein sequence

>Msa0185390

MSSSILLSSSNNFILFKQHHKLVLSSSSSNSNNFLSHHPQHLSFQNQRFTTFISKAKNHKNKKNSTTWWQKFFQQDDGNWLDDMVEEDVEFEVEEEQELSEEEKFEAWKQRAEAIIDIREAQEDRKNQDHRKWEDWLLEDDSSSSSSSWESGIKDYREELRGEDDDFNENNGVVQSVKYLIFGREDGGDNDDDMLYEDRAKFLGVLIIIPWAMDFLVHDYVLMPFLDRYVKTVPLAAQMLDVRRYQKLQMIEELKTEKSRFELEVEIGKSPPLSDNEVWWELRNKALELRDEWRLENRRAFANIWSDTVFGISLFILLYFNKSKVALLKFTGYKIINNISDTGKAFLIILITDIFLGYHSESGWQTLIEIIVEHYGLEVDQAAITIFVCFVPVIVDACVKLWLFKFLPRLSPKVMSIFQEMKRH*