AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0532840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532840 MtrunA17_Chr4g0006411 96.517 201 7 0 1 201 1 201 6.59e-148 410
Msa0532840 MtrunA17_Chr3g0116671 34.921 189 115 4 17 201 43 227 3.29e-26 102
Msa0532840 MtrunA17_Chr7g0258361 36.170 141 89 1 58 198 47 186 1.73e-25 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0532840 AT3G08920.1 59.412 170 65 1 32 201 23 188 1.84e-72 219
Msa0532840 AT4G24750.1 42.000 150 85 2 52 201 82 229 1.22e-30 114
Msa0532840 AT2G42220.1 32.911 158 105 1 41 198 32 188 1.63e-25 99.8
Msa0532840 AT4G27700.1 27.564 156 78 5 50 183 66 208 5.09e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGAAATGGGTTCATTT+TGG 0.181555 4_1:+7427885 Msa0532840:CDS
TGTTTATAGTTAGTTCTTAA+TGG 0.219190 4_1:+7427492 Msa0532840:five_prime_UTR
GCAATAATGCAGAACAAATT+TGG 0.244096 4_1:+7430705 Msa0532840:intron
TGCCTTCTCTCTTTCCCAAT+TGG 0.249345 4_1:-7427796 None:intergenic
TTGTCTAGCACTCATATTAT+TGG 0.250558 4_1:-7427682 None:intergenic
CATTTCTTAAGCAAAGTTAA+AGG 0.288252 4_1:-7427873 None:intergenic
ATAACTGTTGAAGCATCTTT+TGG 0.292122 4_1:-7427738 None:intergenic
CTTTAACTTTGCTTAAGAAA+TGG 0.296949 4_1:+7427874 Msa0532840:CDS
GCCTTCTCTCTTTCCCAATT+GGG 0.299652 4_1:-7427795 None:intergenic
TGGCATGTGGAGAAGGATTA+AGG 0.339086 4_1:+7428009 Msa0532840:CDS
GCAACTTCAAAGCTGTATAA+TGG 0.365682 4_1:+7429244 Msa0532840:CDS
TTTAACTTTGCTTAAGAAAT+GGG 0.367978 4_1:+7427875 Msa0532840:CDS
TTTGCATGTGCCAATGTTTG+TGG 0.398101 4_1:+7427833 Msa0532840:CDS
GTTGCCATATTGTGATGTTA+TGG 0.405469 4_1:-7427537 None:intergenic
AGAAATCTTGCATGGTTAGT+TGG 0.408746 4_1:+7429274 Msa0532840:CDS
TCTTGATGTTAGACCCAATT+GGG 0.414437 4_1:+7427782 Msa0532840:CDS
CAAGTGGAAAATGTTGTTCC+TGG 0.429047 4_1:+7427966 Msa0532840:CDS
GGTTATATTGGTGCTTGGAC+TGG 0.434850 4_1:+7427906 Msa0532840:CDS
ATATCCATAACATCACAATA+TGG 0.443614 4_1:+7427533 Msa0532840:exon
TTCTTGATGTTAGACCCAAT+TGG 0.445913 4_1:+7427781 Msa0532840:CDS
CTCTGAGTTTCTTAGTCAAG+TGG 0.449525 4_1:+7427950 Msa0532840:CDS
GCTAGACAACTCATAGAATC+TGG 0.477325 4_1:+7427696 Msa0532840:CDS
AATCTTGCATGGTTAGTTGG+AGG 0.498346 4_1:+7429277 Msa0532840:CDS
GTTCTTGTGGCATGTGGAGA+AGG 0.499010 4_1:+7428002 Msa0532840:CDS
TCCTTATCTTCCACAAACAT+TGG 0.502436 4_1:-7427843 None:intergenic
GATGATTTCTCAGAAGTTGA+AGG 0.505639 4_1:+7429319 Msa0532840:CDS
GAGGTTAGACCAATGGCCTA+TGG 0.535553 4_1:+7430730 Msa0532840:CDS
TTTGTGGAAGATAAGGATAA+TGG 0.538416 4_1:+7427849 Msa0532840:CDS
TCAACAGTTATGAACTCAGA+AGG 0.546363 4_1:+7427750 Msa0532840:CDS
AGAACCTTGGTATCTTTACC+AGG 0.556206 4_1:-7427984 None:intergenic
ATGCAGAACAAATTTGGAGG+AGG 0.559973 4_1:+7430711 Msa0532840:intron
ACCAAGGTTCTTGTGGCATG+TGG 0.563369 4_1:+7427996 Msa0532840:CDS
TGTCGCAGCTGTTGAACCAT+AGG 0.564160 4_1:-7430746 None:intergenic
TAAGAACTAACTATAAACAT+TGG 0.565441 4_1:-7427488 None:intergenic
TCCACATGCCACAAGAACCT+TGG 0.571858 4_1:-7427997 None:intergenic
GCCAATGTTTGTGGAAGATA+AGG 0.571971 4_1:+7427842 Msa0532840:CDS
TAAAGATACCAAGGTTCTTG+TGG 0.577211 4_1:+7427989 Msa0532840:CDS
GCTGTTGAACCATAGGCCAT+TGG 0.582488 4_1:-7430739 None:intergenic
TTTGGAGGAGGTTAGACCAA+TGG 0.590737 4_1:+7430723 Msa0532840:CDS
AGAGAGAAGGCACATGTGAA+AGG 0.600594 4_1:+7427807 Msa0532840:CDS
ATAATGCAGAACAAATTTGG+AGG 0.602964 4_1:+7430708 Msa0532840:intron
GAGGTTACAGAAATCTTGCA+TGG 0.606184 4_1:+7429266 Msa0532840:CDS
ACCCAATTGGGAAAGAGAGA+AGG 0.609153 4_1:+7427794 Msa0532840:CDS
ACTTCAAAGCTGTATAATGG+AGG 0.653802 4_1:+7429247 Msa0532840:CDS
TGTTCCTGGTAAAGATACCA+AGG 0.656791 4_1:+7427980 Msa0532840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATCATATACTAT+AGG - chr4_1:7428770-7428789 None:intergenic 10.0%
!!! ATGATTTTATATTGTAAATT+GGG - chr4_1:7429136-7429155 None:intergenic 10.0%
!!! AATGATTTTATATTGTAAAT+TGG - chr4_1:7429137-7429156 None:intergenic 10.0%
!! AAAAACTAATATAATCTAAT+AGG - chr4_1:7429936-7429955 None:intergenic 10.0%
!!! AACGATTTTATACAATATTA+AGG + chr4_1:7428421-7428440 Msa0532840:intron 15.0%
!! ATAAAAAAGACAATTGAAAT+AGG + chr4_1:7428783-7428802 Msa0532840:intron 15.0%
!! ATATTTCATAAATTGTAAGA+TGG - chr4_1:7428895-7428914 None:intergenic 15.0%
!! ATAGAACAAGTTTATTATTA+TGG + chr4_1:7429165-7429184 Msa0532840:intron 15.0%
!!! TACAATTTAAAGTACTAATT+TGG - chr4_1:7429910-7429929 None:intergenic 15.0%
!! AAATTAGTACTTTAAATTGT+AGG + chr4_1:7429909-7429928 Msa0532840:intron 15.0%
!! TAAGAACTAACTATAAACAT+TGG - chr4_1:7427491-7427510 None:intergenic 20.0%
!!! TGTTTATAGTTAGTTCTTAA+TGG + chr4_1:7427492-7427511 Msa0532840:five_prime_UTR 20.0%
!!! TTTAACTTTGCTTAAGAAAT+GGG + chr4_1:7427875-7427894 Msa0532840:CDS 20.0%
!! AAACTTAAGTGCATTTATTT+AGG + chr4_1:7428091-7428110 Msa0532840:intron 20.0%
!!! TGAATTTTGAGAAAATTAAG+TGG + chr4_1:7428185-7428204 Msa0532840:intron 20.0%
!!! AAAACTACGTTTTAAGTTTT+TGG + chr4_1:7428506-7428525 Msa0532840:intron 20.0%
!!! TTTAATTGAAGTAGGTTTTT+TGG + chr4_1:7428562-7428581 Msa0532840:intron 20.0%
!! TGATTTATTTAGAGACTATA+AGG + chr4_1:7429611-7429630 Msa0532840:intron 20.0%
!! TACTAATATATTCGAGTAAA+TGG - chr4_1:7429667-7429686 None:intergenic 20.0%
!! ATAAGCAAATACTAAATAGT+TGG + chr4_1:7429972-7429991 Msa0532840:intron 20.0%
!! ATTTGATGAAAAATCTATAG+CGG - chr4_1:7430091-7430110 None:intergenic 20.0%
!! TTAATATCATATTGGAGTAT+TGG + chr4_1:7430163-7430182 Msa0532840:intron 20.0%
!!! CAAACAAATTTTTTAACCTT+AGG - chr4_1:7430563-7430582 None:intergenic 20.0%
!!! CTAAGGTTAAAAAATTTGTT+TGG + chr4_1:7430561-7430580 Msa0532840:intron 20.0%
! ATATCCATAACATCACAATA+TGG + chr4_1:7427533-7427552 Msa0532840:exon 25.0%
! CATTTCTTAAGCAAAGTTAA+AGG - chr4_1:7427876-7427895 None:intergenic 25.0%
!! CTTTAACTTTGCTTAAGAAA+TGG + chr4_1:7427874-7427893 Msa0532840:CDS 25.0%
!!! TTGTTTTGTTTTGCAGAATA+TGG + chr4_1:7428052-7428071 Msa0532840:intron 25.0%
! AACTTGAAACATAGATTATG+TGG + chr4_1:7428133-7428152 Msa0532840:intron 25.0%
! ATTGTATAAAATCGTTGTCA+TGG - chr4_1:7428417-7428436 None:intergenic 25.0%
!! TTCTCTTCAAAAGAAGTTTT+TGG + chr4_1:7428535-7428554 Msa0532840:intron 25.0%
! TAATTACAAAGGAAGTGAAT+TGG - chr4_1:7428947-7428966 None:intergenic 25.0%
!!! TAAACCTTTGTTTTACACAA+GGG - chr4_1:7428998-7429017 None:intergenic 25.0%
! GATACAACCTATAATTTCAA+AGG - chr4_1:7429998-7430017 None:intergenic 25.0%
! ACATTATCAGTATGTCAAAA+TGG + chr4_1:7430031-7430050 Msa0532840:intron 25.0%
! TTTGATGAAAAATCTATAGC+GGG - chr4_1:7430090-7430109 None:intergenic 25.0%
! CAAATTCATCCAAAATATGA+CGG + chr4_1:7430138-7430157 Msa0532840:intron 25.0%
!! ATATTAACTCCGTCATATTT+TGG - chr4_1:7430150-7430169 None:intergenic 25.0%
! TGATTTAGTTGAAATCTAGT+GGG - chr4_1:7430608-7430627 None:intergenic 25.0%
! ATGATTTAGTTGAAATCTAG+TGG - chr4_1:7430609-7430628 None:intergenic 25.0%
TTGTCTAGCACTCATATTAT+TGG - chr4_1:7427685-7427704 None:intergenic 30.0%
!! ATAACTGTTGAAGCATCTTT+TGG - chr4_1:7427741-7427760 None:intergenic 30.0%
TTTGTGGAAGATAAGGATAA+TGG + chr4_1:7427849-7427868 Msa0532840:CDS 30.0%
!! CTTAAGAAATGGGTTCATTT+TGG + chr4_1:7427885-7427904 Msa0532840:CDS 30.0%
!!! TGGGTTCATTTTGGTTATAT+TGG + chr4_1:7427894-7427913 Msa0532840:CDS 30.0%
!!! ATTTTGGTTATATTGGTGCT+TGG + chr4_1:7427901-7427920 Msa0532840:CDS 30.0%
GAAGGATTAAGGTAAATATG+TGG + chr4_1:7428020-7428039 Msa0532840:intron 30.0%
TTGGTGCATTTAATTGAAGT+AGG + chr4_1:7428554-7428573 Msa0532840:intron 30.0%
AACAATGACTAATCGTTGTT+TGG - chr4_1:7428729-7428748 None:intergenic 30.0%
!! CAATTGAAATAGGTTGCTTT+TGG + chr4_1:7428793-7428812 Msa0532840:intron 30.0%
!!! AAATAGGTTGCTTTTGGTTT+TGG + chr4_1:7428799-7428818 Msa0532840:intron 30.0%
!! GTAAAGGCTGTTGATTTATT+TGG + chr4_1:7428854-7428873 Msa0532840:intron 30.0%
TCACTTCCTTTGTAATTAAC+AGG + chr4_1:7428949-7428968 Msa0532840:intron 30.0%
AATCAGCCTGTTAATTACAA+AGG - chr4_1:7428958-7428977 None:intergenic 30.0%
!!! GTAAACCTTTGTTTTACACA+AGG - chr4_1:7428999-7429018 None:intergenic 30.0%
ATGGCAATGAAGCAAAATAT+TGG + chr4_1:7429184-7429203 Msa0532840:intron 30.0%
CAATGAAGCAAAATATTGGT+TGG + chr4_1:7429188-7429207 Msa0532840:intron 30.0%
AAGTTGAAGTATGCTACAAT+TGG + chr4_1:7429349-7429368 Msa0532840:intron 30.0%
ATGACTATTTACTCACAGTT+TGG - chr4_1:7429414-7429433 None:intergenic 30.0%
!! ATGTCATCGATTAGTTTGTT+TGG - chr4_1:7429548-7429567 None:intergenic 30.0%
AATCGATGACATGTTTGATT+TGG + chr4_1:7429556-7429575 Msa0532840:intron 30.0%
TGAGTAAACACTCCAAAATT+GGG + chr4_1:7429838-7429857 Msa0532840:intron 30.0%
!! TAGTTGGCCTTTGAAATTAT+AGG + chr4_1:7429988-7430007 Msa0532840:intron 30.0%
TGACGGAGTTAATATCATAT+TGG + chr4_1:7430155-7430174 Msa0532840:intron 30.0%
AGTGAAAAGAGATCAACAAA+CGG - chr4_1:7430334-7430353 None:intergenic 30.0%
AAATTCGTTTCCAAAACTTC+GGG - chr4_1:7430523-7430542 None:intergenic 30.0%
CAAATTCGTTTCCAAAACTT+CGG - chr4_1:7430524-7430543 None:intergenic 30.0%
AGATTTCAACTAAATCATCG+AGG + chr4_1:7430611-7430630 Msa0532840:intron 30.0%
! ACATCTATCATCTCTTCTTT+TGG + chr4_1:7430681-7430700 Msa0532840:intron 30.0%
GCAATAATGCAGAACAAATT+TGG + chr4_1:7430705-7430724 Msa0532840:intron 30.0%
ATAATGCAGAACAAATTTGG+AGG + chr4_1:7430708-7430727 Msa0532840:intron 30.0%
GTTGCCATATTGTGATGTTA+TGG - chr4_1:7427540-7427559 None:intergenic 35.0%
TCAACAGTTATGAACTCAGA+AGG + chr4_1:7427750-7427769 Msa0532840:CDS 35.0%
TTCTTGATGTTAGACCCAAT+TGG + chr4_1:7427781-7427800 Msa0532840:CDS 35.0%
TCTTGATGTTAGACCCAATT+GGG + chr4_1:7427782-7427801 Msa0532840:CDS 35.0%
TCCTTATCTTCCACAAACAT+TGG - chr4_1:7427846-7427865 None:intergenic 35.0%
TAAAGATACCAAGGTTCTTG+TGG + chr4_1:7427989-7428008 Msa0532840:CDS 35.0%
GCAAACTCGTATTTGCATAA+GGG - chr4_1:7428381-7428400 None:intergenic 35.0%
TGCAAACTCGTATTTGCATA+AGG - chr4_1:7428382-7428401 None:intergenic 35.0%
TATAAAATCGTTGTCATGGC+GGG - chr4_1:7428413-7428432 None:intergenic 35.0%
GTATAAAATCGTTGTCATGG+CGG - chr4_1:7428414-7428433 None:intergenic 35.0%
!!! GCATTCTCGTTTTAAAAGAC+TGG + chr4_1:7428449-7428468 Msa0532840:intron 35.0%
TAAACAAGTGATCGAGAGTT+TGG + chr4_1:7428628-7428647 Msa0532840:intron 35.0%
ATAGGAAGAAAATCCAGTCA+GGG + chr4_1:7428665-7428684 Msa0532840:intron 35.0%
AACACACAATTTCTTAAGCC+AGG + chr4_1:7428825-7428844 Msa0532840:intron 35.0%
ACACACAATTTCTTAAGCCA+GGG + chr4_1:7428826-7428845 Msa0532840:intron 35.0%
AATTTCTTAAGCCAGGGATA+TGG + chr4_1:7428832-7428851 Msa0532840:intron 35.0%
!! AGGCTGATTCTTTTTCTTGT+TGG + chr4_1:7428969-7428988 Msa0532840:intron 35.0%
GTTTCCCTTGTGTAAAACAA+AGG + chr4_1:7428991-7429010 Msa0532840:intron 35.0%
TTCTTGTTGAGTGACTATTC+AGG + chr4_1:7429212-7429231 Msa0532840:intron 35.0%
GCAACTTCAAAGCTGTATAA+TGG + chr4_1:7429244-7429263 Msa0532840:CDS 35.0%
ACTTCAAAGCTGTATAATGG+AGG + chr4_1:7429247-7429266 Msa0532840:CDS 35.0%
AGAAATCTTGCATGGTTAGT+TGG + chr4_1:7429274-7429293 Msa0532840:CDS 35.0%
GATGATTTCTCAGAAGTTGA+AGG + chr4_1:7429319-7429338 Msa0532840:CDS 35.0%
TTGAAGTATGCTACAATTGG+AGG + chr4_1:7429352-7429371 Msa0532840:intron 35.0%
! ACATTCCTAAGTGTGTTTTC+TGG + chr4_1:7429493-7429512 Msa0532840:intron 35.0%
TATTCGAGTAAATGGTCACT+TGG - chr4_1:7429659-7429678 None:intergenic 35.0%
AGAAGCTTACACGTTCAATA+GGG - chr4_1:7429727-7429746 None:intergenic 35.0%
TAGAAGCTTACACGTTCAAT+AGG - chr4_1:7429728-7429747 None:intergenic 35.0%
GTGAGTAAACACTCCAAAAT+TGG + chr4_1:7429837-7429856 Msa0532840:intron 35.0%
TATATTCCGAAACCGAACTA+TGG + chr4_1:7430241-7430260 Msa0532840:intron 35.0%
TGTATACCATAGTTCGGTTT+CGG - chr4_1:7430250-7430269 None:intergenic 35.0%
AGGTCATGTATACCATAGTT+CGG - chr4_1:7430256-7430275 None:intergenic 35.0%
!! CGATGGAAGTATCAGAAAAA+TGG + chr4_1:7430416-7430435 Msa0532840:intron 35.0%
!!! CGAAGTTTTGGAAACGAATT+TGG + chr4_1:7430522-7430541 Msa0532840:intron 35.0%
!!! GTTTTGGAAACGAATTTGGA+AGG + chr4_1:7430526-7430545 Msa0532840:intron 35.0%
GCTAGACAACTCATAGAATC+TGG + chr4_1:7427696-7427715 Msa0532840:CDS 40.0%
TTTGCATGTGCCAATGTTTG+TGG + chr4_1:7427833-7427852 Msa0532840:CDS 40.0%
GCCAATGTTTGTGGAAGATA+AGG + chr4_1:7427842-7427861 Msa0532840:CDS 40.0%
CTCTGAGTTTCTTAGTCAAG+TGG + chr4_1:7427950-7427969 Msa0532840:CDS 40.0%
CAAGTGGAAAATGTTGTTCC+TGG + chr4_1:7427966-7427985 Msa0532840:CDS 40.0%
TGTTCCTGGTAAAGATACCA+AGG + chr4_1:7427980-7427999 Msa0532840:CDS 40.0%
AGAACCTTGGTATCTTTACC+AGG - chr4_1:7427987-7428006 None:intergenic 40.0%
AGATTTGAATTTGTCCCCTG+AGG + chr4_1:7428235-7428254 Msa0532840:intron 40.0%
GGTCAAACTCGTATTTGCAT+AGG - chr4_1:7428320-7428339 None:intergenic 40.0%
ATAAAATCGTTGTCATGGCG+GGG - chr4_1:7428412-7428431 None:intergenic 40.0%
ATTCCACTCGGACAAACATA+TGG - chr4_1:7428593-7428612 None:intergenic 40.0%
ATATGTTTGTCCGAGTGGAA+TGG + chr4_1:7428592-7428611 Msa0532840:intron 40.0%
TATGTTTGTCCGAGTGGAAT+GGG + chr4_1:7428593-7428612 Msa0532840:intron 40.0%
TTGGTTTCGAACTCTTGCAT+AGG + chr4_1:7428647-7428666 Msa0532840:intron 40.0%
CATAGGAAGAAAATCCAGTC+AGG + chr4_1:7428664-7428683 Msa0532840:intron 40.0%
TAGGAAGAAAATCCAGTCAG+GGG + chr4_1:7428666-7428685 Msa0532840:intron 40.0%
TTTAATTCTATCCCCCTGAC+TGG - chr4_1:7428681-7428700 None:intergenic 40.0%
GCTTGTTTGACACACAATGT+GGG - chr4_1:7428704-7428723 None:intergenic 40.0%
! AGCTTGTTTGACACACAATG+TGG - chr4_1:7428705-7428724 None:intergenic 40.0%
TTAAGCCAGGGATATGGTAA+AGG + chr4_1:7428838-7428857 Msa0532840:intron 40.0%
GAGGTTACAGAAATCTTGCA+TGG + chr4_1:7429266-7429285 Msa0532840:CDS 40.0%
! AATCTTGCATGGTTAGTTGG+AGG + chr4_1:7429277-7429296 Msa0532840:CDS 40.0%
CAACTGAAGGAAGTAGTAAG+AGG - chr4_1:7429380-7429399 None:intergenic 40.0%
GAATGTGTCTCCATATCGAT+CGG - chr4_1:7429520-7429539 None:intergenic 40.0%
CAATTAATGCGCTTGCAACA+AGG - chr4_1:7429754-7429773 None:intergenic 40.0%
CACTTCTGTAAGAATCTGAC+AGG - chr4_1:7429820-7429839 None:intergenic 40.0%
! CACGTTCAAAGTCCCAATTT+TGG - chr4_1:7429853-7429872 None:intergenic 40.0%
GTATACATGACCTTGATCAG+TGG + chr4_1:7430263-7430282 Msa0532840:intron 40.0%
TTGACAGTAACTCCAAGCAA+TGG + chr4_1:7430302-7430321 Msa0532840:intron 40.0%
AAACGGTACATTCCATTGCT+TGG - chr4_1:7430317-7430336 None:intergenic 40.0%
!! CAAGGGAGTGTTTAAAATGC+TGG - chr4_1:7430370-7430389 None:intergenic 40.0%
AAACACTCCCTTGTTCAGTT+CGG + chr4_1:7430377-7430396 Msa0532840:intron 40.0%
GAAACGAATTTGGAAGGCAA+AGG + chr4_1:7430532-7430551 Msa0532840:intron 40.0%
ATGCAGAACAAATTTGGAGG+AGG + chr4_1:7430711-7430730 Msa0532840:intron 40.0%
ACCCAATTGGGAAAGAGAGA+AGG + chr4_1:7427794-7427813 Msa0532840:CDS 45.0%
GCCTTCTCTCTTTCCCAATT+GGG - chr4_1:7427798-7427817 None:intergenic 45.0%
TGCCTTCTCTCTTTCCCAAT+TGG - chr4_1:7427799-7427818 None:intergenic 45.0%
! AGAGAGAAGGCACATGTGAA+AGG + chr4_1:7427807-7427826 Msa0532840:CDS 45.0%
! GGTTATATTGGTGCTTGGAC+TGG + chr4_1:7427906-7427925 Msa0532840:CDS 45.0%
TGGCATGTGGAGAAGGATTA+AGG + chr4_1:7428009-7428028 Msa0532840:CDS 45.0%
AATTTGTCCCCTGAGGTTAC+TGG + chr4_1:7428242-7428261 Msa0532840:intron 45.0%
ACTCCTATCCAGTAACCTCA+GGG - chr4_1:7428253-7428272 None:intergenic 45.0%
AACTCCTATCCAGTAACCTC+AGG - chr4_1:7428254-7428273 None:intergenic 45.0%
GCATAAGGGATATGACTCTG+TGG - chr4_1:7428367-7428386 None:intergenic 45.0%
CACTCGGACAAACATATGGT+CGG - chr4_1:7428589-7428608 None:intergenic 45.0%
AGGAAGAAAATCCAGTCAGG+GGG + chr4_1:7428667-7428686 Msa0532840:intron 45.0%
AACAGCCTTTACCATATCCC+TGG - chr4_1:7428846-7428865 None:intergenic 45.0%
! GGAGAAGTATGAGCAACTGA+AGG - chr4_1:7429393-7429412 None:intergenic 45.0%
TCGGTCCAGAAAACACACTT+AGG - chr4_1:7429501-7429520 None:intergenic 45.0%
! GTTTTCTGGACCGATCGATA+TGG + chr4_1:7429507-7429526 Msa0532840:intron 45.0%
AGGAGACGCTGACATATTCA+AGG + chr4_1:7429631-7429650 Msa0532840:intron 45.0%
TCCCACTTTGCAATACCAAG+TGG + chr4_1:7430200-7430219 Msa0532840:intron 45.0%
GCCACTTGGTATTGCAAAGT+GGG - chr4_1:7430204-7430223 None:intergenic 45.0%
AGCCACTTGGTATTGCAAAG+TGG - chr4_1:7430205-7430224 None:intergenic 45.0%
ACATGACCTTGATCAGTGGA+TGG + chr4_1:7430267-7430286 Msa0532840:intron 45.0%
CTGAAACCATCCACTGATCA+AGG - chr4_1:7430276-7430295 None:intergenic 45.0%
!! GGGAGTGTTTAAAATGCTGG+CGG - chr4_1:7430367-7430386 None:intergenic 45.0%
TCTGCTACCGAACTGAACAA+GGG - chr4_1:7430387-7430406 None:intergenic 45.0%
TTCAGTTCGGTAGCAGAGAA+TGG + chr4_1:7430390-7430409 Msa0532840:intron 45.0%
!! AAACTTCGGGTTGTTCATGC+TGG - chr4_1:7430510-7430529 None:intergenic 45.0%
! GCATGAACAACCCGAAGTTT+TGG + chr4_1:7430510-7430529 Msa0532840:intron 45.0%
! TCGCACAACACACATTGGTT+CGG - chr4_1:7430647-7430666 None:intergenic 45.0%
AACCAATGTGTGTTGTGCGA+AGG + chr4_1:7430647-7430666 Msa0532840:intron 45.0%
AACCTTCGCACAACACACAT+TGG - chr4_1:7430652-7430671 None:intergenic 45.0%
GTTGTGCGAAGGTTAAGTAG+AGG + chr4_1:7430658-7430677 Msa0532840:intron 45.0%
TTTGGAGGAGGTTAGACCAA+TGG + chr4_1:7430723-7430742 Msa0532840:CDS 45.0%
ACCAAGGTTCTTGTGGCATG+TGG + chr4_1:7427996-7428015 Msa0532840:CDS 50.0%
TCCACATGCCACAAGAACCT+TGG - chr4_1:7428000-7428019 None:intergenic 50.0%
GTTCTTGTGGCATGTGGAGA+AGG + chr4_1:7428002-7428021 Msa0532840:CDS 50.0%
CTCCTATCCAGTAACCTCAG+GGG - chr4_1:7428252-7428271 None:intergenic 50.0%
!! AGGTGACGGAGTGATAAGGA+AGG - chr4_1:7428341-7428360 None:intergenic 50.0%
CGACCATATGTTTGTCCGAG+TGG + chr4_1:7428587-7428606 Msa0532840:intron 50.0%
TACCCAAGTCCCATTCCACT+CGG - chr4_1:7428605-7428624 None:intergenic 50.0%
CTCTGCTACCGAACTGAACA+AGG - chr4_1:7430388-7430407 None:intergenic 50.0%
GTAGCAGAGAATGGCTACGA+TGG + chr4_1:7430399-7430418 Msa0532840:intron 50.0%
GAAGGCAAAGGTTCGACCTA+AGG + chr4_1:7430544-7430563 Msa0532840:intron 50.0%
GAGGTTAGACCAATGGCCTA+TGG + chr4_1:7430730-7430749 Msa0532840:CDS 50.0%
GCTGTTGAACCATAGGCCAT+TGG - chr4_1:7430742-7430761 None:intergenic 50.0%
TGTCGCAGCTGTTGAACCAT+AGG - chr4_1:7430749-7430768 None:intergenic 50.0%
GTCCCCTGAGGTTACTGGAT+AGG + chr4_1:7428247-7428266 Msa0532840:intron 55.0%
!! GCTGAGGTGACGGAGTGATA+AGG - chr4_1:7428345-7428364 None:intergenic 55.0%
TGACTCTGTGGCTGAGGTGA+CGG - chr4_1:7428355-7428374 None:intergenic 55.0%
GGGATATGACTCTGTGGCTG+AGG - chr4_1:7428361-7428380 None:intergenic 55.0%
! AAATCGTTGTCATGGCGGGG+CGG - chr4_1:7428409-7428428 None:intergenic 55.0%
TGTCCGAGTGGAATGGGACT+TGG + chr4_1:7428599-7428618 Msa0532840:intron 55.0%
GTCCGAGTGGAATGGGACTT+GGG + chr4_1:7428600-7428619 Msa0532840:intron 55.0%
CCATTCGCACGCAAGCCACT+TGG - chr4_1:7430218-7430237 None:intergenic 60.0%
! CCAAGTGGCTTGCGTGCGAA+TGG + chr4_1:7430215-7430234 Msa0532840:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7427487 7430774 7427487 ID=Msa0532840;Name=Msa0532840
chr4_1 mRNA 7427487 7430774 7427487 ID=Msa0532840-mRNA-1;Parent=Msa0532840;Name=Msa0532840-mRNA-1;_AED=0.29;_eAED=0.29;_QI=65|0.5|0.33|0.66|1|1|3|0|219
chr4_1 exon 7427487 7428030 7427487 ID=Msa0532840-mRNA-1:exon:2558;Parent=Msa0532840-mRNA-1
chr4_1 exon 7429234 7429356 7429234 ID=Msa0532840-mRNA-1:exon:2559;Parent=Msa0532840-mRNA-1
chr4_1 exon 7430717 7430774 7430717 ID=Msa0532840-mRNA-1:exon:2560;Parent=Msa0532840-mRNA-1
chr4_1 five_prime_UTR 7427487 7427551 7427487 ID=Msa0532840-mRNA-1:five_prime_utr;Parent=Msa0532840-mRNA-1
chr4_1 CDS 7427552 7428030 7427552 ID=Msa0532840-mRNA-1:cds;Parent=Msa0532840-mRNA-1
chr4_1 CDS 7429234 7429356 7429234 ID=Msa0532840-mRNA-1:cds;Parent=Msa0532840-mRNA-1
chr4_1 CDS 7430717 7430774 7430717 ID=Msa0532840-mRNA-1:cds;Parent=Msa0532840-mRNA-1
Gene Sequence

>Msa0532840

ATGGCAACTCATTTGAAGTACAATCTATTCAACACTTCAATACTTCAAAAACACAAAACACAAAAACAAAACAACTCTTTCACTACAGTCACACAAAAATCATCAAGATTTCATGTTATCAATGCAACATCCAATAATATGAGTGCTAGACAACTCATAGAATCTGGTACAATAAGAACAATTTTGCCAAAAGATGCTTCAACAGTTATGAACTCAGAAGGTTTCATTCTTCTTGATGTTAGACCCAATTGGGAAAGAGAGAAGGCACATGTGAAAGGTTCTTTGCATGTGCCAATGTTTGTGGAAGATAAGGATAATGGTCCTTTAACTTTGCTTAAGAAATGGGTTCATTTTGGTTATATTGGTGCTTGGACTGGTCAATATCTTACTACTTTTAACTCTGAGTTTCTTAGTCAAGTGGAAAATGTTGTTCCTGGTAAAGATACCAAGGTTCTTGTGGCATGTGGAGAAGGATTAAGGTCAATGACAGCAACTTCAAAGCTGTATAATGGAGGTTACAGAAATCTTGCATGGTTAGTTGGAGGCTTTAGTCGTTCAAAAGACGATGATTTCTCAGAAGTTGAAGGAAAAGAGAAGTTGAAAACAAATTTGGAGGAGGTTAGACCAATGGCCTATGGTTCAACAGCTGCGACAACATAA

Protein sequence

>Msa0532840

MATHLKYNLFNTSILQKHKTQKQNNSFTTVTQKSSRFHVINATSNNMSARQLIESGTIRTILPKDASTVMNSEGFILLDVRPNWEREKAHVKGSLHVPMFVEDKDNGPLTLLKKWVHFGYIGAWTGQYLTTFNSEFLSQVENVVPGKDTKVLVACGEGLRSMTATSKLYNGGYRNLAWLVGGFSRSKDDDFSEVEGKEKLKTNLEEVRPMAYGSTAATT*