AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259760 MtrunA17_Chr2g0333621 43.098 297 138 13 1 272 1 291 1.68e-57 187
Msa0259760 MtrunA17_Chr2g0333641 42.373 295 139 11 1 272 1 287 2.41e-56 184
Msa0259760 MtrunA17_Chr4g0002801 34.579 321 150 9 1 272 1 310 2.03e-44 154
Msa0259760 MtrunA17_Chr4g0002781 40.909 220 117 3 64 272 112 329 5.53e-43 150
Msa0259760 MtrunA17_Chr8g0336681 48.148 162 76 4 117 272 156 315 1.96e-36 133
Msa0259760 MtrunA17_Chr2g0333611 44.048 168 82 5 118 282 46 204 1.40e-34 125
Msa0259760 MtrunA17_Chr5g0400661 41.176 187 98 4 117 292 149 334 5.63e-32 121
Msa0259760 MtrunA17_Chr5g0400621 38.596 171 101 2 110 280 150 316 4.90e-29 113
Msa0259760 MtrunA17_Chr2g0280161 34.807 181 110 4 103 282 166 339 4.90e-28 110
Msa0259760 MtrunA17_Chr5g0400671 34.343 198 120 4 76 272 115 303 2.20e-27 108
Msa0259760 MtrunA17_Chr7g0225901 36.095 169 103 2 117 284 88 252 1.28e-26 105
Msa0259760 MtrunA17_Chr4g0049331 34.940 166 104 2 117 282 135 296 1.63e-26 105
Msa0259760 MtrunA17_Chr6g0468491 32.083 240 148 4 57 293 76 303 2.87e-25 102
Msa0259760 MtrunA17_Chr2g0333541 35.125 279 138 10 22 282 4 257 3.84e-25 101
Msa0259760 MtrunA17_Chr2g0333631 43.902 164 56 8 15 162 1 144 5.32e-25 97.8
Msa0259760 MtrunA17_Chr4g0054561 35.135 185 107 4 113 291 151 328 8.13e-25 101
Msa0259760 MtrunA17_Chr2g0307131 38.217 157 92 3 117 272 179 331 1.35e-24 101
Msa0259760 MtrunA17_Chr7g0249811 36.449 214 112 5 68 272 110 308 1.50e-24 101
Msa0259760 MtrunA17_Chr4g0054581 33.333 225 124 7 81 282 142 363 1.62e-24 101
Msa0259760 MtrunA17_Chr2g0307141 36.943 157 94 3 117 272 183 335 3.50e-23 97.8
Msa0259760 MtrunA17_Chr5g0400641 37.662 154 93 1 120 273 1 151 7.82e-23 92.4
Msa0259760 MtrunA17_Chr6g0468461 30.870 230 127 6 57 278 112 317 3.99e-22 94.7
Msa0259760 MtrunA17_Chr7g0233441 42.537 134 52 3 145 272 62 176 6.99e-22 90.9
Msa0259760 MtrunA17_Chr4g0033291 34.254 181 101 5 97 272 137 304 2.09e-21 92.4
Msa0259760 MtrunA17_Chr4g0054621 29.864 221 138 5 63 282 122 326 4.11e-21 91.7
Msa0259760 MtrunA17_Chr4g0054551 35.404 161 97 2 113 272 151 305 5.12e-21 91.3
Msa0259760 MtrunA17_Chr4g0002831 39.189 148 71 4 128 272 53 184 9.35e-21 88.2
Msa0259760 MtrunA17_Chr4g0033391 34.302 172 105 4 101 272 133 296 2.84e-20 89.4
Msa0259760 MtrunA17_Chr4g0054571 34.043 188 93 4 117 290 150 320 7.98e-20 87.8
Msa0259760 MtrunA17_Chr4g0002851 37.931 145 68 3 128 272 54 176 5.93e-19 83.2
Msa0259760 MtrunA17_Chr4g0033281 33.708 178 101 3 103 272 133 301 4.07e-16 77.4
Msa0259760 MtrunA17_Chr8g0386921 24.766 214 124 6 92 273 377 585 3.94e-12 66.6
Msa0259760 MtrunA17_Chr1g0185621 26.590 173 103 4 115 273 473 635 1.18e-11 65.1
Msa0259760 MtrunA17_Chr8g0366751 25.472 212 134 4 90 293 441 636 9.00e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259760 AT4G37850.2 39.157 166 96 4 117 281 152 313 2.83e-27 108
Msa0259760 AT4G37850.1 39.157 166 96 4 117 281 152 313 2.83e-27 108
Msa0259760 AT2G22760.2 37.037 162 100 2 117 277 119 279 1.72e-26 105
Msa0259760 AT2G22760.1 36.747 166 102 3 117 281 119 282 5.22e-26 104
Msa0259760 AT2G22770.1 35.955 178 101 3 117 282 132 308 2.06e-23 98.2
Msa0259760 AT2G22750.2 35.196 179 90 4 117 282 126 291 1.50e-18 84.3
Msa0259760 AT2G22750.3 35.196 179 90 4 117 282 154 319 1.61e-18 84.7
Msa0259760 AT2G22750.5 35.196 179 90 4 117 282 150 315 1.84e-18 84.3
Msa0259760 AT2G22750.1 35.714 168 83 3 117 271 126 281 2.82e-18 83.6
Msa0259760 AT2G22750.4 35.714 168 83 3 117 271 154 309 3.07e-18 84.0
Msa0259760 AT4G09820.1 33.529 170 77 6 116 279 362 501 9.48e-14 71.6
Msa0259760 AT1G63650.3 29.050 179 111 3 117 280 405 582 1.22e-13 71.6
Msa0259760 AT1G63650.1 29.050 179 111 3 117 280 405 582 1.22e-13 71.6
Msa0259760 AT1G63650.2 29.050 179 111 3 117 280 405 582 1.22e-13 71.6
Msa0259760 AT5G41315.3 26.316 190 119 4 109 278 438 626 4.48e-12 66.6
Msa0259760 AT5G41315.2 26.316 190 119 4 109 278 441 629 5.01e-12 66.6
Msa0259760 AT5G41315.1 26.316 190 119 4 109 278 433 621 5.46e-12 66.6

Find 55 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATAGTTAATGAAAATT+TGG 0.144317 2_2:+57038688 None:intergenic
CTAACTCCTTCACTCGTTTC+TGG 0.173101 2_2:+57039026 None:intergenic
CAATATCTGGCACTCTCTTA+TGG 0.264252 2_2:-57040246 Msa0259760:exon
TAGAGCTTGCATTATCTCTT+TGG 0.266677 2_2:-57039926 Msa0259760:CDS
ATCAATTGTGAGAAGGAAAA+TGG 0.286777 2_2:-57038830 Msa0259760:CDS
ACAACGTGGTGGTTTGGATT+TGG 0.302005 2_2:+57039867 None:intergenic
CTGGAGTTGCTCCACGTAAT+TGG 0.302982 2_2:+57039045 None:intergenic
TGGCATTCAACACAAAATAT+TGG 0.325928 2_2:-57038810 Msa0259760:CDS
AGAGATCTAATAATTGCTTT+TGG 0.331987 2_2:+57039802 None:intergenic
ATGAATCTTGACAATTATCT+TGG 0.345786 2_2:-57038914 Msa0259760:CDS
AGACTTCCTTTGTGACTTCA+TGG 0.350365 2_2:-57040043 Msa0259760:CDS
GCAATGGCAGCTCCAGCTAC+TGG 0.359273 2_2:+57040015 None:intergenic
GACAAAGCTTCTATCGTTGC+TGG 0.389114 2_2:-57039073 Msa0259760:CDS
CCGTTTGGCAATTCAACTCT+TGG 0.391384 2_2:-57038740 Msa0259760:CDS
CATAAGAGAGTGCCAGATAT+TGG 0.399635 2_2:+57040247 None:intergenic
ATACGAGAGTCACCAATATC+TGG 0.407485 2_2:-57040259 Msa0259760:five_prime_UTR
ACATCAGGAAGCAATTCATT+TGG 0.411022 2_2:+57038890 None:intergenic
TTCTTATTGAGAAGTATCAT+TGG 0.433422 2_2:+57038974 None:intergenic
AGCAGTCATGGGATAATGTT+TGG 0.439626 2_2:-57040223 Msa0259760:CDS
GACACTTTCACTTTGACATC+AGG 0.450201 2_2:+57038875 None:intergenic
TGTGGGACAACGTGGTGGTT+TGG 0.461838 2_2:+57039861 None:intergenic
AGCACTAGCACATTGCCGTT+TGG 0.467143 2_2:-57038755 Msa0259760:CDS
TTCATGGCACAGCCAGTAGC+TGG 0.474815 2_2:-57040027 Msa0259760:CDS
ACGCAATGGGAGAGAGGAAA+AGG 0.480162 2_2:-57039774 Msa0259760:CDS
ACTCTCTTATGGAGCAGTCA+TGG 0.487165 2_2:-57040235 Msa0259760:exon
CTCTCTTATGGAGCAGTCAT+GGG 0.514446 2_2:-57040234 Msa0259760:exon
GAACGCAGTACCGTTTGAAA+AGG 0.517464 2_2:+57040200 None:intergenic
TTGGATTTGGACATCACAGC+TGG 0.517868 2_2:+57039880 None:intergenic
GTGGACGGAGGAAGAAGCTC+CGG 0.531427 2_2:+57039955 None:intergenic
AATGCAAGCTCTAGAGGATG+TGG 0.535694 2_2:+57039936 None:intergenic
AGATCTCTAGATCACGCAAT+GGG 0.542864 2_2:-57039787 Msa0259760:CDS
AAAGGAAGTCTTCATCTTCG+TGG 0.550705 2_2:+57040055 None:intergenic
AAGATTCATTTCACTAGATG+TGG 0.558723 2_2:+57038928 None:intergenic
AGAGATAATGCAAGCTCTAG+AGG 0.565903 2_2:+57039930 None:intergenic
ACGCTCGGTAGCAGCAGCAA+TGG 0.570572 2_2:+57039999 None:intergenic
CCAAGAGTTGAATTGCCAAA+CGG 0.575048 2_2:+57038740 None:intergenic
TGTAGTCTCTGATGAGTCAC+CGG 0.575944 2_2:-57039974 Msa0259760:CDS
ATTAGTACCTTGTTTGAGCG+AGG 0.577779 2_2:+57039706 None:intergenic
AGCTGGTAACAGTATCTTCG+CGG 0.585382 2_2:+57039897 None:intergenic
AAATTTGGTGATGCGAACCT+TGG 0.588692 2_2:+57038703 None:intergenic
ATCAGAGACTACAATACGCT+CGG 0.591680 2_2:+57039984 None:intergenic
CATTTACATCAATTGTGAGA+AGG 0.601314 2_2:-57038837 Msa0259760:CDS
AAACGGCAATGTGCTAGTGC+TGG 0.603776 2_2:+57038757 None:intergenic
TATTATTCCTCGCTCAAACA+AGG 0.615369 2_2:-57039713 Msa0259760:intron
TAGATCACGCAATGGGAGAG+AGG 0.615416 2_2:-57039780 Msa0259760:CDS
TAGATCTCTAGATCACGCAA+TGG 0.625523 2_2:-57039788 Msa0259760:CDS
TGGCATAACTATCATCGCCA+AGG 0.626059 2_2:-57038720 Msa0259760:CDS
GAAGTACAACAAAACAAGAG+AGG 0.647529 2_2:-57039004 Msa0259760:CDS
TGCTGGCGCAACCAATTACG+TGG 0.650808 2_2:-57039056 Msa0259760:CDS
GACTTCTGAGAATCGAAACA+TGG 0.657951 2_2:-57039827 Msa0259760:CDS
TGATGTCAAAGTGAAAGTGT+CGG 0.659461 2_2:-57038873 Msa0259760:CDS
GCAACTCCAGAAACGAGTGA+AGG 0.675689 2_2:-57039032 Msa0259760:CDS
CAAGCTCTAGAGGATGTGGA+CGG 0.686043 2_2:+57039940 None:intergenic
GCTCTAGAGGATGTGGACGG+AGG 0.694196 2_2:+57039943 None:intergenic
GCTGTGCCATGAAGTCACAA+AGG 0.700598 2_2:+57040037 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAAATACATTAATAATTT+GGG + chr2_2:57039793-57039812 None:intergenic 10.0%
!! TTGTAAATACATTAATAATT+TGG + chr2_2:57039794-57039813 None:intergenic 10.0%
!! TGTAAATACATTAATAATTT+GGG + chr2_2:57039793-57039812 None:intergenic 10.0%
!! TTGTAAATACATTAATAATT+TGG + chr2_2:57039794-57039813 None:intergenic 10.0%
!!! GTTTAATTCAAACATTTTAT+AGG - chr2_2:57038794-57038813 Msa0259760:CDS 15.0%
!!! ATTATTTTTTTGATAAGCAA+AGG + chr2_2:57039256-57039275 None:intergenic 15.0%
!!! CCATTTTAAAACATTTTTTA+AGG + chr2_2:57039645-57039664 None:intergenic 15.0%
!!! CCTTAAAAAATGTTTTAAAA+TGG - chr2_2:57039642-57039661 Msa0259760:intron 15.0%
!! TTCAATAGTTAATGAAAATT+TGG + chr2_2:57040218-57040237 None:intergenic 15.0%
!!! TTGAAATGAATATGTTTTTA+AGG - chr2_2:57040233-57040252 Msa0259760:exon 15.0%
!!! TGAAATGAATATGTTTTTAA+GGG - chr2_2:57040234-57040253 Msa0259760:exon 15.0%
!!! GTTTAATTCAAACATTTTAT+AGG - chr2_2:57038794-57038813 Msa0259760:CDS 15.0%
!!! ATTATTTTTTTGATAAGCAA+AGG + chr2_2:57039256-57039275 None:intergenic 15.0%
!!! CCATTTTAAAACATTTTTTA+AGG + chr2_2:57039645-57039664 None:intergenic 15.0%
!!! CCTTAAAAAATGTTTTAAAA+TGG - chr2_2:57039642-57039661 Msa0259760:intron 15.0%
!! TTCAATAGTTAATGAAAATT+TGG + chr2_2:57040218-57040237 None:intergenic 15.0%
!!! TTGAAATGAATATGTTTTTA+AGG - chr2_2:57040233-57040252 Msa0259760:exon 15.0%
!!! TGAAATGAATATGTTTTTAA+GGG - chr2_2:57040234-57040253 Msa0259760:exon 15.0%
!!! TTCAAACATTTTATAGGAAA+TGG - chr2_2:57038800-57038819 Msa0259760:CDS 20.0%
!! TAGAAAATAAAGACCAATAT+AGG - chr2_2:57039619-57039638 Msa0259760:intron 20.0%
!!! TTCAAACATTTTATAGGAAA+TGG - chr2_2:57038800-57038819 Msa0259760:CDS 20.0%
!! TAGAAAATAAAGACCAATAT+AGG - chr2_2:57039619-57039638 Msa0259760:intron 20.0%
! ATATTTGTATCAATTGATGC+TGG + chr2_2:57038728-57038747 None:intergenic 25.0%
!! AGAGATCTAATAATTGCTTT+TGG + chr2_2:57039104-57039123 None:intergenic 25.0%
!!! ACATTTTTTAAGGCCTATAT+TGG + chr2_2:57039635-57039654 None:intergenic 25.0%
!! TAATTTGGGATGTCTAATAT+CGG + chr2_2:57039779-57039798 None:intergenic 25.0%
!!! TTCTTATTGAGAAGTATCAT+TGG + chr2_2:57039932-57039951 None:intergenic 25.0%
! CTCAATAAGAAAAATTCTTG+TGG - chr2_2:57039941-57039960 Msa0259760:CDS 25.0%
! ATGAATCTTGACAATTATCT+TGG - chr2_2:57039989-57040008 Msa0259760:CDS 25.0%
! ATATTTGTATCAATTGATGC+TGG + chr2_2:57038728-57038747 None:intergenic 25.0%
!! AGAGATCTAATAATTGCTTT+TGG + chr2_2:57039104-57039123 None:intergenic 25.0%
!!! ACATTTTTTAAGGCCTATAT+TGG + chr2_2:57039635-57039654 None:intergenic 25.0%
!! TAATTTGGGATGTCTAATAT+CGG + chr2_2:57039779-57039798 None:intergenic 25.0%
!!! TTCTTATTGAGAAGTATCAT+TGG + chr2_2:57039932-57039951 None:intergenic 25.0%
! CTCAATAAGAAAAATTCTTG+TGG - chr2_2:57039941-57039960 Msa0259760:CDS 25.0%
! ATGAATCTTGACAATTATCT+TGG - chr2_2:57039989-57040008 Msa0259760:CDS 25.0%
!! TAATGTTTGGCCTTTTCAAA+CGG - chr2_2:57038693-57038712 Msa0259760:CDS 30.0%
! CATTTTATAGGAAATGGATG+TGG - chr2_2:57038806-57038825 Msa0259760:CDS 30.0%
!!! GAAGTCATCATCTTTTTTGT+GGG + chr2_2:57039062-57039081 None:intergenic 30.0%
!!! AGAAGTCATCATCTTTTTTG+TGG + chr2_2:57039063-57039082 None:intergenic 30.0%
!!! TTTTTTGATAAGCAAAGGCA+AGG + chr2_2:57039251-57039270 None:intergenic 30.0%
AAAACATCTCTTCAAATCGT+TGG - chr2_2:57039394-57039413 Msa0259760:intron 30.0%
TTGACATAATACCATTCTTC+AGG - chr2_2:57039433-57039452 Msa0259760:intron 30.0%
TGACATAATACCATTCTTCA+GGG - chr2_2:57039434-57039453 Msa0259760:intron 30.0%
GTATCAACAACAAATGTTGA+GGG + chr2_2:57039485-57039504 None:intergenic 30.0%
AGTAGAATCTACCTTTAAAC+CGG - chr2_2:57039752-57039771 Msa0259760:CDS 30.0%
AAGATTCATTTCACTAGATG+TGG + chr2_2:57039978-57039997 None:intergenic 30.0%
CATTTACATCAATTGTGAGA+AGG - chr2_2:57040066-57040085 Msa0259760:CDS 30.0%
ATCAATTGTGAGAAGGAAAA+TGG - chr2_2:57040073-57040092 Msa0259760:CDS 30.0%
TGGCATTCAACACAAAATAT+TGG - chr2_2:57040093-57040112 Msa0259760:intron 30.0%
!! TAATGTTTGGCCTTTTCAAA+CGG - chr2_2:57038693-57038712 Msa0259760:CDS 30.0%
! CATTTTATAGGAAATGGATG+TGG - chr2_2:57038806-57038825 Msa0259760:CDS 30.0%
!!! GAAGTCATCATCTTTTTTGT+GGG + chr2_2:57039062-57039081 None:intergenic 30.0%
!!! AGAAGTCATCATCTTTTTTG+TGG + chr2_2:57039063-57039082 None:intergenic 30.0%
!!! TTTTTTGATAAGCAAAGGCA+AGG + chr2_2:57039251-57039270 None:intergenic 30.0%
AAAACATCTCTTCAAATCGT+TGG - chr2_2:57039394-57039413 Msa0259760:intron 30.0%
TTGACATAATACCATTCTTC+AGG - chr2_2:57039433-57039452 Msa0259760:intron 30.0%
TGACATAATACCATTCTTCA+GGG - chr2_2:57039434-57039453 Msa0259760:intron 30.0%
GTATCAACAACAAATGTTGA+GGG + chr2_2:57039485-57039504 None:intergenic 30.0%
AGTAGAATCTACCTTTAAAC+CGG - chr2_2:57039752-57039771 Msa0259760:CDS 30.0%
AAGATTCATTTCACTAGATG+TGG + chr2_2:57039978-57039997 None:intergenic 30.0%
CATTTACATCAATTGTGAGA+AGG - chr2_2:57040066-57040085 Msa0259760:CDS 30.0%
ATCAATTGTGAGAAGGAAAA+TGG - chr2_2:57040073-57040092 Msa0259760:CDS 30.0%
TGGCATTCAACACAAAATAT+TGG - chr2_2:57040093-57040112 Msa0259760:intron 30.0%
TAGAGCTTGCATTATCTCTT+TGG - chr2_2:57038977-57038996 Msa0259760:CDS 35.0%
TATTATTCCTCGCTCAAACA+AGG - chr2_2:57039190-57039209 Msa0259760:intron 35.0%
CATATTCAAACCCTGAAGAA+TGG + chr2_2:57039447-57039466 None:intergenic 35.0%
GGTATCAACAACAAATGTTG+AGG + chr2_2:57039486-57039505 None:intergenic 35.0%
!! AATGAGTGTTGAGTTTGGAA+GGG + chr2_2:57039528-57039547 None:intergenic 35.0%
GAAGTACAACAAAACAAGAG+AGG - chr2_2:57039899-57039918 Msa0259760:CDS 35.0%
ACATCAGGAAGCAATTCATT+TGG + chr2_2:57040016-57040035 None:intergenic 35.0%
! TGATGTCAAAGTGAAAGTGT+CGG - chr2_2:57040030-57040049 Msa0259760:CDS 35.0%
TAGAGCTTGCATTATCTCTT+TGG - chr2_2:57038977-57038996 Msa0259760:CDS 35.0%
TATTATTCCTCGCTCAAACA+AGG - chr2_2:57039190-57039209 Msa0259760:intron 35.0%
CATATTCAAACCCTGAAGAA+TGG + chr2_2:57039447-57039466 None:intergenic 35.0%
GGTATCAACAACAAATGTTG+AGG + chr2_2:57039486-57039505 None:intergenic 35.0%
!! AATGAGTGTTGAGTTTGGAA+GGG + chr2_2:57039528-57039547 None:intergenic 35.0%
GAAGTACAACAAAACAAGAG+AGG - chr2_2:57039899-57039918 Msa0259760:CDS 35.0%
ACATCAGGAAGCAATTCATT+TGG + chr2_2:57040016-57040035 None:intergenic 35.0%
! TGATGTCAAAGTGAAAGTGT+CGG - chr2_2:57040030-57040049 Msa0259760:CDS 35.0%
!! CATAAGAGAGTGCCAGATAT+TGG + chr2_2:57038659-57038678 None:intergenic 40.0%
CAATATCTGGCACTCTCTTA+TGG - chr2_2:57038657-57038676 Msa0259760:CDS 40.0%
AGCAGTCATGGGATAATGTT+TGG - chr2_2:57038680-57038699 Msa0259760:CDS 40.0%
AAAGGAAGTCTTCATCTTCG+TGG + chr2_2:57038851-57038870 None:intergenic 40.0%
AGACTTCCTTTGTGACTTCA+TGG - chr2_2:57038860-57038879 Msa0259760:CDS 40.0%
ATCAGAGACTACAATACGCT+CGG + chr2_2:57038922-57038941 None:intergenic 40.0%
! AGAGATAATGCAAGCTCTAG+AGG + chr2_2:57038976-57038995 None:intergenic 40.0%
!!! ATCTTTTTTGTGGGACAACG+TGG + chr2_2:57039053-57039072 None:intergenic 40.0%
! GACTTCTGAGAATCGAAACA+TGG - chr2_2:57039076-57039095 Msa0259760:CDS 40.0%
TAGATCTCTAGATCACGCAA+TGG - chr2_2:57039115-57039134 Msa0259760:intron 40.0%
AGATCTCTAGATCACGCAAT+GGG - chr2_2:57039116-57039135 Msa0259760:intron 40.0%
! ATTAGTACCTTGTTTGAGCG+AGG + chr2_2:57039200-57039219 None:intergenic 40.0%
!! CAATGAGTGTTGAGTTTGGA+AGG + chr2_2:57039529-57039548 None:intergenic 40.0%
!! CTTGCAATGAGTGTTGAGTT+TGG + chr2_2:57039533-57039552 None:intergenic 40.0%
CTAATATCGGTCCGGTTTAA+AGG + chr2_2:57039766-57039785 None:intergenic 40.0%
GACACTTTCACTTTGACATC+AGG + chr2_2:57040031-57040050 None:intergenic 40.0%
CCAAGAGTTGAATTGCCAAA+CGG + chr2_2:57040166-57040185 None:intergenic 40.0%
!! AAATTTGGTGATGCGAACCT+TGG + chr2_2:57040203-57040222 None:intergenic 40.0%
!! CATAAGAGAGTGCCAGATAT+TGG + chr2_2:57038659-57038678 None:intergenic 40.0%
CAATATCTGGCACTCTCTTA+TGG - chr2_2:57038657-57038676 Msa0259760:CDS 40.0%
AGCAGTCATGGGATAATGTT+TGG - chr2_2:57038680-57038699 Msa0259760:CDS 40.0%
AAAGGAAGTCTTCATCTTCG+TGG + chr2_2:57038851-57038870 None:intergenic 40.0%
AGACTTCCTTTGTGACTTCA+TGG - chr2_2:57038860-57038879 Msa0259760:CDS 40.0%
ATCAGAGACTACAATACGCT+CGG + chr2_2:57038922-57038941 None:intergenic 40.0%
! AGAGATAATGCAAGCTCTAG+AGG + chr2_2:57038976-57038995 None:intergenic 40.0%
!!! ATCTTTTTTGTGGGACAACG+TGG + chr2_2:57039053-57039072 None:intergenic 40.0%
! GACTTCTGAGAATCGAAACA+TGG - chr2_2:57039076-57039095 Msa0259760:CDS 40.0%
TAGATCTCTAGATCACGCAA+TGG - chr2_2:57039115-57039134 Msa0259760:intron 40.0%
AGATCTCTAGATCACGCAAT+GGG - chr2_2:57039116-57039135 Msa0259760:intron 40.0%
! ATTAGTACCTTGTTTGAGCG+AGG + chr2_2:57039200-57039219 None:intergenic 40.0%
!! CAATGAGTGTTGAGTTTGGA+AGG + chr2_2:57039529-57039548 None:intergenic 40.0%
!! CTTGCAATGAGTGTTGAGTT+TGG + chr2_2:57039533-57039552 None:intergenic 40.0%
CTAATATCGGTCCGGTTTAA+AGG + chr2_2:57039766-57039785 None:intergenic 40.0%
GACACTTTCACTTTGACATC+AGG + chr2_2:57040031-57040050 None:intergenic 40.0%
CCAAGAGTTGAATTGCCAAA+CGG + chr2_2:57040166-57040185 None:intergenic 40.0%
!! AAATTTGGTGATGCGAACCT+TGG + chr2_2:57040203-57040222 None:intergenic 40.0%
ACTCTCTTATGGAGCAGTCA+TGG - chr2_2:57038668-57038687 Msa0259760:CDS 45.0%
CTCTCTTATGGAGCAGTCAT+GGG - chr2_2:57038669-57038688 Msa0259760:CDS 45.0%
GAACGCAGTACCGTTTGAAA+AGG + chr2_2:57038706-57038725 None:intergenic 45.0%
TGTAGTCTCTGATGAGTCAC+CGG - chr2_2:57038929-57038948 Msa0259760:CDS 45.0%
!! AATGCAAGCTCTAGAGGATG+TGG + chr2_2:57038970-57038989 None:intergenic 45.0%
AGCTGGTAACAGTATCTTCG+CGG + chr2_2:57039009-57039028 None:intergenic 45.0%
TTGGATTTGGACATCACAGC+TGG + chr2_2:57039026-57039045 None:intergenic 45.0%
! ACAACGTGGTGGTTTGGATT+TGG + chr2_2:57039039-57039058 None:intergenic 45.0%
!!! TTTTTTGTGGGACAACGTGG+TGG + chr2_2:57039050-57039069 None:intergenic 45.0%
AAGGGAAGAATGAGGAGGTT+TGG + chr2_2:57039510-57039529 None:intergenic 45.0%
TTTGGAAGGGAAGAATGAGG+AGG + chr2_2:57039515-57039534 None:intergenic 45.0%
GAGTTTGGAAGGGAAGAATG+AGG + chr2_2:57039518-57039537 None:intergenic 45.0%
TGGGATGTCTAATATCGGTC+CGG + chr2_2:57039774-57039793 None:intergenic 45.0%
GACAAAGCTTCTATCGTTGC+TGG - chr2_2:57039830-57039849 Msa0259760:CDS 45.0%
CTAACTCCTTCACTCGTTTC+TGG + chr2_2:57039880-57039899 None:intergenic 45.0%
CCGTTTGGCAATTCAACTCT+TGG - chr2_2:57040163-57040182 Msa0259760:intron 45.0%
TGGCATAACTATCATCGCCA+AGG - chr2_2:57040183-57040202 Msa0259760:intron 45.0%
ACTCTCTTATGGAGCAGTCA+TGG - chr2_2:57038668-57038687 Msa0259760:CDS 45.0%
CTCTCTTATGGAGCAGTCAT+GGG - chr2_2:57038669-57038688 Msa0259760:CDS 45.0%
GAACGCAGTACCGTTTGAAA+AGG + chr2_2:57038706-57038725 None:intergenic 45.0%
TGTAGTCTCTGATGAGTCAC+CGG - chr2_2:57038929-57038948 Msa0259760:CDS 45.0%
!! AATGCAAGCTCTAGAGGATG+TGG + chr2_2:57038970-57038989 None:intergenic 45.0%
AGCTGGTAACAGTATCTTCG+CGG + chr2_2:57039009-57039028 None:intergenic 45.0%
TTGGATTTGGACATCACAGC+TGG + chr2_2:57039026-57039045 None:intergenic 45.0%
! ACAACGTGGTGGTTTGGATT+TGG + chr2_2:57039039-57039058 None:intergenic 45.0%
!!! TTTTTTGTGGGACAACGTGG+TGG + chr2_2:57039050-57039069 None:intergenic 45.0%
AAGGGAAGAATGAGGAGGTT+TGG + chr2_2:57039510-57039529 None:intergenic 45.0%
TTTGGAAGGGAAGAATGAGG+AGG + chr2_2:57039515-57039534 None:intergenic 45.0%
GAGTTTGGAAGGGAAGAATG+AGG + chr2_2:57039518-57039537 None:intergenic 45.0%
TGGGATGTCTAATATCGGTC+CGG + chr2_2:57039774-57039793 None:intergenic 45.0%
GACAAAGCTTCTATCGTTGC+TGG - chr2_2:57039830-57039849 Msa0259760:CDS 45.0%
CTAACTCCTTCACTCGTTTC+TGG + chr2_2:57039880-57039899 None:intergenic 45.0%
CCGTTTGGCAATTCAACTCT+TGG - chr2_2:57040163-57040182 Msa0259760:intron 45.0%
TGGCATAACTATCATCGCCA+AGG - chr2_2:57040183-57040202 Msa0259760:intron 45.0%
GCTGTGCCATGAAGTCACAA+AGG + chr2_2:57038869-57038888 None:intergenic 50.0%
!! CAAGCTCTAGAGGATGTGGA+CGG + chr2_2:57038966-57038985 None:intergenic 50.0%
TAGATCACGCAATGGGAGAG+AGG - chr2_2:57039123-57039142 Msa0259760:intron 50.0%
ACGCAATGGGAGAGAGGAAA+AGG - chr2_2:57039129-57039148 Msa0259760:intron 50.0%
GGAAGAATGAGGAGGTTTGG+TGG + chr2_2:57039507-57039526 None:intergenic 50.0%
CTGGAGTTGCTCCACGTAAT+TGG + chr2_2:57039861-57039880 None:intergenic 50.0%
GCAACTCCAGAAACGAGTGA+AGG - chr2_2:57039871-57039890 Msa0259760:CDS 50.0%
AAACGGCAATGTGCTAGTGC+TGG + chr2_2:57040149-57040168 None:intergenic 50.0%
AGCACTAGCACATTGCCGTT+TGG - chr2_2:57040148-57040167 Msa0259760:intron 50.0%
GCTGTGCCATGAAGTCACAA+AGG + chr2_2:57038869-57038888 None:intergenic 50.0%
!! CAAGCTCTAGAGGATGTGGA+CGG + chr2_2:57038966-57038985 None:intergenic 50.0%
TAGATCACGCAATGGGAGAG+AGG - chr2_2:57039123-57039142 Msa0259760:intron 50.0%
ACGCAATGGGAGAGAGGAAA+AGG - chr2_2:57039129-57039148 Msa0259760:intron 50.0%
GGAAGAATGAGGAGGTTTGG+TGG + chr2_2:57039507-57039526 None:intergenic 50.0%
CTGGAGTTGCTCCACGTAAT+TGG + chr2_2:57039861-57039880 None:intergenic 50.0%
GCAACTCCAGAAACGAGTGA+AGG - chr2_2:57039871-57039890 Msa0259760:CDS 50.0%
AAACGGCAATGTGCTAGTGC+TGG + chr2_2:57040149-57040168 None:intergenic 50.0%
AGCACTAGCACATTGCCGTT+TGG - chr2_2:57040148-57040167 Msa0259760:intron 50.0%
TTCATGGCACAGCCAGTAGC+TGG - chr2_2:57038876-57038895 Msa0259760:CDS 55.0%
TGTGGGACAACGTGGTGGTT+TGG + chr2_2:57039045-57039064 None:intergenic 55.0%
TGCTGGCGCAACCAATTACG+TGG - chr2_2:57039847-57039866 Msa0259760:CDS 55.0%
TTCATGGCACAGCCAGTAGC+TGG - chr2_2:57038876-57038895 Msa0259760:CDS 55.0%
TGTGGGACAACGTGGTGGTT+TGG + chr2_2:57039045-57039064 None:intergenic 55.0%
TGCTGGCGCAACCAATTACG+TGG - chr2_2:57039847-57039866 Msa0259760:CDS 55.0%
GCAATGGCAGCTCCAGCTAC+TGG + chr2_2:57038891-57038910 None:intergenic 60.0%
ACGCTCGGTAGCAGCAGCAA+TGG + chr2_2:57038907-57038926 None:intergenic 60.0%
GTGGACGGAGGAAGAAGCTC+CGG + chr2_2:57038951-57038970 None:intergenic 60.0%
!! GCTCTAGAGGATGTGGACGG+AGG + chr2_2:57038963-57038982 None:intergenic 60.0%
GCAATGGCAGCTCCAGCTAC+TGG + chr2_2:57038891-57038910 None:intergenic 60.0%
ACGCTCGGTAGCAGCAGCAA+TGG + chr2_2:57038907-57038926 None:intergenic 60.0%
GTGGACGGAGGAAGAAGCTC+CGG + chr2_2:57038951-57038970 None:intergenic 60.0%
!! GCTCTAGAGGATGTGGACGG+AGG + chr2_2:57038963-57038982 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 57038646 57040279 57038646 ID=Msa0259760;Name=Msa0259760
chr2_2 mRNA 57038646 57040279 57038646 ID=Msa0259760-mRNA-1;Parent=Msa0259760;Name=Msa0259760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=30|1|0.66|1|1|1|3|0|295
chr2_2 exon 57038646 57039098 57038646 ID=Msa0259760-mRNA-1:exon:17285;Parent=Msa0259760-mRNA-1
chr2_2 exon 57039714 57040109 57039714 ID=Msa0259760-mRNA-1:exon:17284;Parent=Msa0259760-mRNA-1
chr2_2 exon 57040211 57040279 57040211 ID=Msa0259760-mRNA-1:exon:17283;Parent=Msa0259760-mRNA-1
chr2_2 five_prime_UTR 57040250 57040279 57040250 ID=Msa0259760-mRNA-1:five_prime_utr;Parent=Msa0259760-mRNA-1
chr2_2 CDS 57040211 57040249 57040211 ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1
chr2_2 CDS 57039714 57040109 57039714 ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1
chr2_2 CDS 57038646 57039098 57038646 ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1
Gene Sequence

>Msa0259760

ATGGAGCAGTCATGGGATAATGTTTGGCCTTTTCAAACGGAAATGGATGTGGAATATTTGTTAGAGATGTGCCACGAAGATGAAGACTTCCTTTGTGACTTCATGGCACAGCCAGTAGCTGGAGCTGCCATTGCTGCTGCTACCGAGCGTATTGTAGTCTCTGATGAGTCACCGGAGCTTCTTCCTCCGTCCACATCCTCTAGAGCTTGCATTATCTCTTTGGATAATTCCGCGAAGATACTGTTACCAGCTGTGATGTCCAAATCCAAACCACCACGTTGTCCCACAAAAAAGATGATGACTTCTGAGAATCGAAACATGGAACCAAAAGCAATTATTAGATCTCTAGATCACGCAATGGGAGAGAGGAAAAGGAGACTTGAACTTGCACACAAATTCATAGAGCTTTCAGCTATTATTCCTCGCTCAAACAAGACAGACAAAGCTTCTATCGTTGCTGGCGCAACCAATTACGTGGAGCAACTCCAGAAACGAGTGAAGGAGTTAGAAGTACAACAAAACAAGAGAGGTAAAGAACCAATGATACTTCTCAATAAGAAAAATTCTTGTGGAGTTTCACGTACCACATCTAGTGAAATGAATCTTGACAATTATCTTGGACCAAATGAATTGCTTCCTGATGTCAAAGTGAAAGTGTCGGAGAATAATATACTCATTTACATCAATTGTGAGAAGGAAAATGGCATTCAACACAAAATATTGGACATGCTTCAAAATCTTCATTTGTTTGTCACCAGCACTAGCACATTGCCGTTTGGCAATTCAACTCTTGGCATAACTATCATCGCCAAGGTTCGCATCACCAAATTTTCATTAACTATTGAAATGAATATGTTTTTAAGGGAAATGTTGTTGAATGAATGTTGA

Protein sequence

>Msa0259760

MEQSWDNVWPFQTEMDVEYLLEMCHEDEDFLCDFMAQPVAGAAIAAATERIVVSDESPELLPPSTSSRACIISLDNSAKILLPAVMSKSKPPRCPTKKMMTSENRNMEPKAIIRSLDHAMGERKRRLELAHKFIELSAIIPRSNKTDKASIVAGATNYVEQLQKRVKELEVQQNKRGKEPMILLNKKNSCGVSRTTSSEMNLDNYLGPNELLPDVKVKVSENNILIYINCEKENGIQHKILDMLQNLHLFVTSTSTLPFGNSTLGITIIAKVRITKFSLTIEMNMFLREMLLNEC*