Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0259760 | XP_039686112.1 | 78.231 | 294 | 47 | 5 | 1 | 287 | 1 | 284 | 1.81e-157 | 451 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0259760 | sp|Q9T072|BH025_ARATH | 39.157 | 166 | 96 | 4 | 117 | 281 | 152 | 313 | 2.78e-26 | 108 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0259760 | G7IMA8 | 77.500 | 280 | 46 | 5 | 15 | 287 | 1 | 270 | 1.64e-145 | 419 |
Gene ID | Type | Classification |
---|---|---|
Msa0259760 | TF | bHLH |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017120 | Msa0259760 | 0.817798 | 2.736028e-52 | -8.615850e-47 |
Msa0065390 | Msa0259760 | 0.800952 | 1.132019e-48 | -8.615850e-47 |
Msa0110710 | Msa0259760 | 0.807192 | 5.698158e-50 | -8.615850e-47 |
Msa0113160 | Msa0259760 | 0.800625 | 1.319811e-48 | -8.615850e-47 |
Msa0132620 | Msa0259760 | 0.802209 | 6.252176e-49 | -8.615850e-47 |
Msa0143080 | Msa0259760 | 0.814777 | 1.295888e-51 | -8.615850e-47 |
Msa0157020 | Msa0259760 | 0.820157 | 7.954999e-53 | -8.615850e-47 |
Msa0185390 | Msa0259760 | 0.804822 | 1.796348e-49 | -8.615850e-47 |
Msa0194970 | Msa0259760 | 0.808087 | 3.679404e-50 | -8.615850e-47 |
Msa0236980 | Msa0259760 | 0.808102 | 3.652041e-50 | -8.615850e-47 |
Msa0259760 | Msa0305480 | 0.996063 | 5.713454e-223 | -8.615850e-47 |
Msa0259760 | Msa0328210 | 0.808097 | 3.661802e-50 | -8.615850e-47 |
Msa0259760 | Msa0484690 | 0.814418 | 1.556604e-51 | -8.615850e-47 |
Msa0259760 | Msa0532840 | 0.808598 | 2.862318e-50 | -8.615850e-47 |
Msa0259760 | Msa0533010 | 0.807988 | 3.861851e-50 | -8.615850e-47 |
Msa0259760 | Msa0538260 | 0.820856 | 5.499451e-53 | -8.615850e-47 |
Msa0259760 | Msa0607500 | 0.822524 | 2.261818e-53 | -8.615850e-47 |
Msa0259760 | Msa0614230 | 0.813607 | 2.349548e-51 | -8.615850e-47 |
Msa0259760 | Msa0619980 | 0.802657 | 5.055162e-49 | -8.615850e-47 |
Msa0259760 | Msa0681890 | 0.803715 | 3.054601e-49 | -8.615850e-47 |
Msa0259760 | Msa0690560 | 0.851606 | 7.955717e-61 | -8.615850e-47 |
Msa0259760 | Msa0738850 | 0.816853 | 4.464248e-52 | -8.615850e-47 |
Msa0259760 | Msa0738860 | 0.836799 | 7.571143e-57 | -8.615850e-47 |
Msa0259760 | Msa0738870 | 0.818079 | 2.363502e-52 | -8.615850e-47 |
Msa0259760 | Msa0859560 | 0.804470 | 2.127335e-49 | -8.615850e-47 |
Msa0259760 | Msa0877420 | 0.813480 | 2.505427e-51 | -8.615850e-47 |
Msa0259760 | Msa0922540 | 0.808479 | 3.035490e-50 | -8.615850e-47 |
Msa0259760 | Msa0925160 | 0.800321 | 1.522611e-48 | -8.615850e-47 |
Msa0259760 | Msa0958020 | 0.820382 | 7.063333e-53 | -8.615850e-47 |
Msa0259760 | Msa1002040 | 0.803376 | 3.590533e-49 | -8.615850e-47 |
Msa0259760 | Msa1018790 | 0.817524 | 3.154244e-52 | -8.615850e-47 |
Msa0259760 | Msa1100490 | 0.803075 | 4.144910e-49 | -8.615850e-47 |
Msa0259760 | Msa1106810 | 0.802202 | 6.273084e-49 | -8.615850e-47 |
Msa0259760 | Msa1107440 | 0.815344 | 9.699562e-52 | -8.615850e-47 |
Msa0259760 | Msa1150970 | 0.820255 | 7.556008e-53 | -8.615850e-47 |
Msa0259760 | Msa1197110 | 0.800236 | 1.584133e-48 | -8.615850e-47 |
Msa0259760 | Msa1200920 | 0.812416 | 4.286191e-51 | -8.615850e-47 |
Msa0259760 | Msa1223840 | 0.817236 | 3.661627e-52 | -8.615850e-47 |
Msa0259760 | Msa1250670 | 0.802620 | 5.146812e-49 | -8.615850e-47 |
Msa0259760 | Msa1373510 | 0.805313 | 1.418118e-49 | -8.615850e-47 |
Msa0259760 | Msa1374440 | 0.816585 | 5.125955e-52 | -8.615850e-47 |
Msa0259760 | Msa1379990 | 0.802141 | 6.458818e-49 | -8.615850e-47 |
Msa0259760 | Msa1381130 | 0.804894 | 1.735073e-49 | -8.615850e-47 |
Msa0259760 | Msa1405770 | 0.805843 | 1.097354e-49 | -8.615850e-47 |
Msa0259760 | Msa1422270 | 0.821881 | 3.189835e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0259760 | MtrunA17_Chr2g0333621 | 43.098 | 297 | 138 | 13 | 1 | 272 | 1 | 291 | 1.68e-57 | 187 |
Msa0259760 | MtrunA17_Chr2g0333641 | 42.373 | 295 | 139 | 11 | 1 | 272 | 1 | 287 | 2.41e-56 | 184 |
Msa0259760 | MtrunA17_Chr4g0002801 | 34.579 | 321 | 150 | 9 | 1 | 272 | 1 | 310 | 2.03e-44 | 154 |
Msa0259760 | MtrunA17_Chr4g0002781 | 40.909 | 220 | 117 | 3 | 64 | 272 | 112 | 329 | 5.53e-43 | 150 |
Msa0259760 | MtrunA17_Chr8g0336681 | 48.148 | 162 | 76 | 4 | 117 | 272 | 156 | 315 | 1.96e-36 | 133 |
Msa0259760 | MtrunA17_Chr2g0333611 | 44.048 | 168 | 82 | 5 | 118 | 282 | 46 | 204 | 1.40e-34 | 125 |
Msa0259760 | MtrunA17_Chr5g0400661 | 41.176 | 187 | 98 | 4 | 117 | 292 | 149 | 334 | 5.63e-32 | 121 |
Msa0259760 | MtrunA17_Chr5g0400621 | 38.596 | 171 | 101 | 2 | 110 | 280 | 150 | 316 | 4.90e-29 | 113 |
Msa0259760 | MtrunA17_Chr2g0280161 | 34.807 | 181 | 110 | 4 | 103 | 282 | 166 | 339 | 4.90e-28 | 110 |
Msa0259760 | MtrunA17_Chr5g0400671 | 34.343 | 198 | 120 | 4 | 76 | 272 | 115 | 303 | 2.20e-27 | 108 |
Msa0259760 | MtrunA17_Chr7g0225901 | 36.095 | 169 | 103 | 2 | 117 | 284 | 88 | 252 | 1.28e-26 | 105 |
Msa0259760 | MtrunA17_Chr4g0049331 | 34.940 | 166 | 104 | 2 | 117 | 282 | 135 | 296 | 1.63e-26 | 105 |
Msa0259760 | MtrunA17_Chr6g0468491 | 32.083 | 240 | 148 | 4 | 57 | 293 | 76 | 303 | 2.87e-25 | 102 |
Msa0259760 | MtrunA17_Chr2g0333541 | 35.125 | 279 | 138 | 10 | 22 | 282 | 4 | 257 | 3.84e-25 | 101 |
Msa0259760 | MtrunA17_Chr2g0333631 | 43.902 | 164 | 56 | 8 | 15 | 162 | 1 | 144 | 5.32e-25 | 97.8 |
Msa0259760 | MtrunA17_Chr4g0054561 | 35.135 | 185 | 107 | 4 | 113 | 291 | 151 | 328 | 8.13e-25 | 101 |
Msa0259760 | MtrunA17_Chr2g0307131 | 38.217 | 157 | 92 | 3 | 117 | 272 | 179 | 331 | 1.35e-24 | 101 |
Msa0259760 | MtrunA17_Chr7g0249811 | 36.449 | 214 | 112 | 5 | 68 | 272 | 110 | 308 | 1.50e-24 | 101 |
Msa0259760 | MtrunA17_Chr4g0054581 | 33.333 | 225 | 124 | 7 | 81 | 282 | 142 | 363 | 1.62e-24 | 101 |
Msa0259760 | MtrunA17_Chr2g0307141 | 36.943 | 157 | 94 | 3 | 117 | 272 | 183 | 335 | 3.50e-23 | 97.8 |
Msa0259760 | MtrunA17_Chr5g0400641 | 37.662 | 154 | 93 | 1 | 120 | 273 | 1 | 151 | 7.82e-23 | 92.4 |
Msa0259760 | MtrunA17_Chr6g0468461 | 30.870 | 230 | 127 | 6 | 57 | 278 | 112 | 317 | 3.99e-22 | 94.7 |
Msa0259760 | MtrunA17_Chr7g0233441 | 42.537 | 134 | 52 | 3 | 145 | 272 | 62 | 176 | 6.99e-22 | 90.9 |
Msa0259760 | MtrunA17_Chr4g0033291 | 34.254 | 181 | 101 | 5 | 97 | 272 | 137 | 304 | 2.09e-21 | 92.4 |
Msa0259760 | MtrunA17_Chr4g0054621 | 29.864 | 221 | 138 | 5 | 63 | 282 | 122 | 326 | 4.11e-21 | 91.7 |
Msa0259760 | MtrunA17_Chr4g0054551 | 35.404 | 161 | 97 | 2 | 113 | 272 | 151 | 305 | 5.12e-21 | 91.3 |
Msa0259760 | MtrunA17_Chr4g0002831 | 39.189 | 148 | 71 | 4 | 128 | 272 | 53 | 184 | 9.35e-21 | 88.2 |
Msa0259760 | MtrunA17_Chr4g0033391 | 34.302 | 172 | 105 | 4 | 101 | 272 | 133 | 296 | 2.84e-20 | 89.4 |
Msa0259760 | MtrunA17_Chr4g0054571 | 34.043 | 188 | 93 | 4 | 117 | 290 | 150 | 320 | 7.98e-20 | 87.8 |
Msa0259760 | MtrunA17_Chr4g0002851 | 37.931 | 145 | 68 | 3 | 128 | 272 | 54 | 176 | 5.93e-19 | 83.2 |
Msa0259760 | MtrunA17_Chr4g0033281 | 33.708 | 178 | 101 | 3 | 103 | 272 | 133 | 301 | 4.07e-16 | 77.4 |
Msa0259760 | MtrunA17_Chr8g0386921 | 24.766 | 214 | 124 | 6 | 92 | 273 | 377 | 585 | 3.94e-12 | 66.6 |
Msa0259760 | MtrunA17_Chr1g0185621 | 26.590 | 173 | 103 | 4 | 115 | 273 | 473 | 635 | 1.18e-11 | 65.1 |
Msa0259760 | MtrunA17_Chr8g0366751 | 25.472 | 212 | 134 | 4 | 90 | 293 | 441 | 636 | 9.00e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0259760 | AT4G37850.2 | 39.157 | 166 | 96 | 4 | 117 | 281 | 152 | 313 | 2.83e-27 | 108 |
Msa0259760 | AT4G37850.1 | 39.157 | 166 | 96 | 4 | 117 | 281 | 152 | 313 | 2.83e-27 | 108 |
Msa0259760 | AT2G22760.2 | 37.037 | 162 | 100 | 2 | 117 | 277 | 119 | 279 | 1.72e-26 | 105 |
Msa0259760 | AT2G22760.1 | 36.747 | 166 | 102 | 3 | 117 | 281 | 119 | 282 | 5.22e-26 | 104 |
Msa0259760 | AT2G22770.1 | 35.955 | 178 | 101 | 3 | 117 | 282 | 132 | 308 | 2.06e-23 | 98.2 |
Msa0259760 | AT2G22750.2 | 35.196 | 179 | 90 | 4 | 117 | 282 | 126 | 291 | 1.50e-18 | 84.3 |
Msa0259760 | AT2G22750.3 | 35.196 | 179 | 90 | 4 | 117 | 282 | 154 | 319 | 1.61e-18 | 84.7 |
Msa0259760 | AT2G22750.5 | 35.196 | 179 | 90 | 4 | 117 | 282 | 150 | 315 | 1.84e-18 | 84.3 |
Msa0259760 | AT2G22750.1 | 35.714 | 168 | 83 | 3 | 117 | 271 | 126 | 281 | 2.82e-18 | 83.6 |
Msa0259760 | AT2G22750.4 | 35.714 | 168 | 83 | 3 | 117 | 271 | 154 | 309 | 3.07e-18 | 84.0 |
Msa0259760 | AT4G09820.1 | 33.529 | 170 | 77 | 6 | 116 | 279 | 362 | 501 | 9.48e-14 | 71.6 |
Msa0259760 | AT1G63650.3 | 29.050 | 179 | 111 | 3 | 117 | 280 | 405 | 582 | 1.22e-13 | 71.6 |
Msa0259760 | AT1G63650.1 | 29.050 | 179 | 111 | 3 | 117 | 280 | 405 | 582 | 1.22e-13 | 71.6 |
Msa0259760 | AT1G63650.2 | 29.050 | 179 | 111 | 3 | 117 | 280 | 405 | 582 | 1.22e-13 | 71.6 |
Msa0259760 | AT5G41315.3 | 26.316 | 190 | 119 | 4 | 109 | 278 | 438 | 626 | 4.48e-12 | 66.6 |
Msa0259760 | AT5G41315.2 | 26.316 | 190 | 119 | 4 | 109 | 278 | 441 | 629 | 5.01e-12 | 66.6 |
Msa0259760 | AT5G41315.1 | 26.316 | 190 | 119 | 4 | 109 | 278 | 433 | 621 | 5.46e-12 | 66.6 |
Find 55 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCAATAGTTAATGAAAATT+TGG | 0.144317 | 2_2:+57038688 | None:intergenic |
CTAACTCCTTCACTCGTTTC+TGG | 0.173101 | 2_2:+57039026 | None:intergenic |
CAATATCTGGCACTCTCTTA+TGG | 0.264252 | 2_2:-57040246 | Msa0259760:exon |
TAGAGCTTGCATTATCTCTT+TGG | 0.266677 | 2_2:-57039926 | Msa0259760:CDS |
ATCAATTGTGAGAAGGAAAA+TGG | 0.286777 | 2_2:-57038830 | Msa0259760:CDS |
ACAACGTGGTGGTTTGGATT+TGG | 0.302005 | 2_2:+57039867 | None:intergenic |
CTGGAGTTGCTCCACGTAAT+TGG | 0.302982 | 2_2:+57039045 | None:intergenic |
TGGCATTCAACACAAAATAT+TGG | 0.325928 | 2_2:-57038810 | Msa0259760:CDS |
AGAGATCTAATAATTGCTTT+TGG | 0.331987 | 2_2:+57039802 | None:intergenic |
ATGAATCTTGACAATTATCT+TGG | 0.345786 | 2_2:-57038914 | Msa0259760:CDS |
AGACTTCCTTTGTGACTTCA+TGG | 0.350365 | 2_2:-57040043 | Msa0259760:CDS |
GCAATGGCAGCTCCAGCTAC+TGG | 0.359273 | 2_2:+57040015 | None:intergenic |
GACAAAGCTTCTATCGTTGC+TGG | 0.389114 | 2_2:-57039073 | Msa0259760:CDS |
CCGTTTGGCAATTCAACTCT+TGG | 0.391384 | 2_2:-57038740 | Msa0259760:CDS |
CATAAGAGAGTGCCAGATAT+TGG | 0.399635 | 2_2:+57040247 | None:intergenic |
ATACGAGAGTCACCAATATC+TGG | 0.407485 | 2_2:-57040259 | Msa0259760:five_prime_UTR |
ACATCAGGAAGCAATTCATT+TGG | 0.411022 | 2_2:+57038890 | None:intergenic |
TTCTTATTGAGAAGTATCAT+TGG | 0.433422 | 2_2:+57038974 | None:intergenic |
AGCAGTCATGGGATAATGTT+TGG | 0.439626 | 2_2:-57040223 | Msa0259760:CDS |
GACACTTTCACTTTGACATC+AGG | 0.450201 | 2_2:+57038875 | None:intergenic |
TGTGGGACAACGTGGTGGTT+TGG | 0.461838 | 2_2:+57039861 | None:intergenic |
AGCACTAGCACATTGCCGTT+TGG | 0.467143 | 2_2:-57038755 | Msa0259760:CDS |
TTCATGGCACAGCCAGTAGC+TGG | 0.474815 | 2_2:-57040027 | Msa0259760:CDS |
ACGCAATGGGAGAGAGGAAA+AGG | 0.480162 | 2_2:-57039774 | Msa0259760:CDS |
ACTCTCTTATGGAGCAGTCA+TGG | 0.487165 | 2_2:-57040235 | Msa0259760:exon |
CTCTCTTATGGAGCAGTCAT+GGG | 0.514446 | 2_2:-57040234 | Msa0259760:exon |
GAACGCAGTACCGTTTGAAA+AGG | 0.517464 | 2_2:+57040200 | None:intergenic |
TTGGATTTGGACATCACAGC+TGG | 0.517868 | 2_2:+57039880 | None:intergenic |
GTGGACGGAGGAAGAAGCTC+CGG | 0.531427 | 2_2:+57039955 | None:intergenic |
AATGCAAGCTCTAGAGGATG+TGG | 0.535694 | 2_2:+57039936 | None:intergenic |
AGATCTCTAGATCACGCAAT+GGG | 0.542864 | 2_2:-57039787 | Msa0259760:CDS |
AAAGGAAGTCTTCATCTTCG+TGG | 0.550705 | 2_2:+57040055 | None:intergenic |
AAGATTCATTTCACTAGATG+TGG | 0.558723 | 2_2:+57038928 | None:intergenic |
AGAGATAATGCAAGCTCTAG+AGG | 0.565903 | 2_2:+57039930 | None:intergenic |
ACGCTCGGTAGCAGCAGCAA+TGG | 0.570572 | 2_2:+57039999 | None:intergenic |
CCAAGAGTTGAATTGCCAAA+CGG | 0.575048 | 2_2:+57038740 | None:intergenic |
TGTAGTCTCTGATGAGTCAC+CGG | 0.575944 | 2_2:-57039974 | Msa0259760:CDS |
ATTAGTACCTTGTTTGAGCG+AGG | 0.577779 | 2_2:+57039706 | None:intergenic |
AGCTGGTAACAGTATCTTCG+CGG | 0.585382 | 2_2:+57039897 | None:intergenic |
AAATTTGGTGATGCGAACCT+TGG | 0.588692 | 2_2:+57038703 | None:intergenic |
ATCAGAGACTACAATACGCT+CGG | 0.591680 | 2_2:+57039984 | None:intergenic |
CATTTACATCAATTGTGAGA+AGG | 0.601314 | 2_2:-57038837 | Msa0259760:CDS |
AAACGGCAATGTGCTAGTGC+TGG | 0.603776 | 2_2:+57038757 | None:intergenic |
TATTATTCCTCGCTCAAACA+AGG | 0.615369 | 2_2:-57039713 | Msa0259760:intron |
TAGATCACGCAATGGGAGAG+AGG | 0.615416 | 2_2:-57039780 | Msa0259760:CDS |
TAGATCTCTAGATCACGCAA+TGG | 0.625523 | 2_2:-57039788 | Msa0259760:CDS |
TGGCATAACTATCATCGCCA+AGG | 0.626059 | 2_2:-57038720 | Msa0259760:CDS |
GAAGTACAACAAAACAAGAG+AGG | 0.647529 | 2_2:-57039004 | Msa0259760:CDS |
TGCTGGCGCAACCAATTACG+TGG | 0.650808 | 2_2:-57039056 | Msa0259760:CDS |
GACTTCTGAGAATCGAAACA+TGG | 0.657951 | 2_2:-57039827 | Msa0259760:CDS |
TGATGTCAAAGTGAAAGTGT+CGG | 0.659461 | 2_2:-57038873 | Msa0259760:CDS |
GCAACTCCAGAAACGAGTGA+AGG | 0.675689 | 2_2:-57039032 | Msa0259760:CDS |
CAAGCTCTAGAGGATGTGGA+CGG | 0.686043 | 2_2:+57039940 | None:intergenic |
GCTCTAGAGGATGTGGACGG+AGG | 0.694196 | 2_2:+57039943 | None:intergenic |
GCTGTGCCATGAAGTCACAA+AGG | 0.700598 | 2_2:+57040037 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTAAATACATTAATAATTT+GGG | + | chr2_2:57039793-57039812 | None:intergenic | 10.0% |
!! | TTGTAAATACATTAATAATT+TGG | + | chr2_2:57039794-57039813 | None:intergenic | 10.0% |
!! | TGTAAATACATTAATAATTT+GGG | + | chr2_2:57039793-57039812 | None:intergenic | 10.0% |
!! | TTGTAAATACATTAATAATT+TGG | + | chr2_2:57039794-57039813 | None:intergenic | 10.0% |
!!! | GTTTAATTCAAACATTTTAT+AGG | - | chr2_2:57038794-57038813 | Msa0259760:CDS | 15.0% |
!!! | ATTATTTTTTTGATAAGCAA+AGG | + | chr2_2:57039256-57039275 | None:intergenic | 15.0% |
!!! | CCATTTTAAAACATTTTTTA+AGG | + | chr2_2:57039645-57039664 | None:intergenic | 15.0% |
!!! | CCTTAAAAAATGTTTTAAAA+TGG | - | chr2_2:57039642-57039661 | Msa0259760:intron | 15.0% |
!! | TTCAATAGTTAATGAAAATT+TGG | + | chr2_2:57040218-57040237 | None:intergenic | 15.0% |
!!! | TTGAAATGAATATGTTTTTA+AGG | - | chr2_2:57040233-57040252 | Msa0259760:exon | 15.0% |
!!! | TGAAATGAATATGTTTTTAA+GGG | - | chr2_2:57040234-57040253 | Msa0259760:exon | 15.0% |
!!! | GTTTAATTCAAACATTTTAT+AGG | - | chr2_2:57038794-57038813 | Msa0259760:CDS | 15.0% |
!!! | ATTATTTTTTTGATAAGCAA+AGG | + | chr2_2:57039256-57039275 | None:intergenic | 15.0% |
!!! | CCATTTTAAAACATTTTTTA+AGG | + | chr2_2:57039645-57039664 | None:intergenic | 15.0% |
!!! | CCTTAAAAAATGTTTTAAAA+TGG | - | chr2_2:57039642-57039661 | Msa0259760:intron | 15.0% |
!! | TTCAATAGTTAATGAAAATT+TGG | + | chr2_2:57040218-57040237 | None:intergenic | 15.0% |
!!! | TTGAAATGAATATGTTTTTA+AGG | - | chr2_2:57040233-57040252 | Msa0259760:exon | 15.0% |
!!! | TGAAATGAATATGTTTTTAA+GGG | - | chr2_2:57040234-57040253 | Msa0259760:exon | 15.0% |
!!! | TTCAAACATTTTATAGGAAA+TGG | - | chr2_2:57038800-57038819 | Msa0259760:CDS | 20.0% |
!! | TAGAAAATAAAGACCAATAT+AGG | - | chr2_2:57039619-57039638 | Msa0259760:intron | 20.0% |
!!! | TTCAAACATTTTATAGGAAA+TGG | - | chr2_2:57038800-57038819 | Msa0259760:CDS | 20.0% |
!! | TAGAAAATAAAGACCAATAT+AGG | - | chr2_2:57039619-57039638 | Msa0259760:intron | 20.0% |
! | ATATTTGTATCAATTGATGC+TGG | + | chr2_2:57038728-57038747 | None:intergenic | 25.0% |
!! | AGAGATCTAATAATTGCTTT+TGG | + | chr2_2:57039104-57039123 | None:intergenic | 25.0% |
!!! | ACATTTTTTAAGGCCTATAT+TGG | + | chr2_2:57039635-57039654 | None:intergenic | 25.0% |
!! | TAATTTGGGATGTCTAATAT+CGG | + | chr2_2:57039779-57039798 | None:intergenic | 25.0% |
!!! | TTCTTATTGAGAAGTATCAT+TGG | + | chr2_2:57039932-57039951 | None:intergenic | 25.0% |
! | CTCAATAAGAAAAATTCTTG+TGG | - | chr2_2:57039941-57039960 | Msa0259760:CDS | 25.0% |
! | ATGAATCTTGACAATTATCT+TGG | - | chr2_2:57039989-57040008 | Msa0259760:CDS | 25.0% |
! | ATATTTGTATCAATTGATGC+TGG | + | chr2_2:57038728-57038747 | None:intergenic | 25.0% |
!! | AGAGATCTAATAATTGCTTT+TGG | + | chr2_2:57039104-57039123 | None:intergenic | 25.0% |
!!! | ACATTTTTTAAGGCCTATAT+TGG | + | chr2_2:57039635-57039654 | None:intergenic | 25.0% |
!! | TAATTTGGGATGTCTAATAT+CGG | + | chr2_2:57039779-57039798 | None:intergenic | 25.0% |
!!! | TTCTTATTGAGAAGTATCAT+TGG | + | chr2_2:57039932-57039951 | None:intergenic | 25.0% |
! | CTCAATAAGAAAAATTCTTG+TGG | - | chr2_2:57039941-57039960 | Msa0259760:CDS | 25.0% |
! | ATGAATCTTGACAATTATCT+TGG | - | chr2_2:57039989-57040008 | Msa0259760:CDS | 25.0% |
!! | TAATGTTTGGCCTTTTCAAA+CGG | - | chr2_2:57038693-57038712 | Msa0259760:CDS | 30.0% |
! | CATTTTATAGGAAATGGATG+TGG | - | chr2_2:57038806-57038825 | Msa0259760:CDS | 30.0% |
!!! | GAAGTCATCATCTTTTTTGT+GGG | + | chr2_2:57039062-57039081 | None:intergenic | 30.0% |
!!! | AGAAGTCATCATCTTTTTTG+TGG | + | chr2_2:57039063-57039082 | None:intergenic | 30.0% |
!!! | TTTTTTGATAAGCAAAGGCA+AGG | + | chr2_2:57039251-57039270 | None:intergenic | 30.0% |
AAAACATCTCTTCAAATCGT+TGG | - | chr2_2:57039394-57039413 | Msa0259760:intron | 30.0% | |
TTGACATAATACCATTCTTC+AGG | - | chr2_2:57039433-57039452 | Msa0259760:intron | 30.0% | |
TGACATAATACCATTCTTCA+GGG | - | chr2_2:57039434-57039453 | Msa0259760:intron | 30.0% | |
GTATCAACAACAAATGTTGA+GGG | + | chr2_2:57039485-57039504 | None:intergenic | 30.0% | |
AGTAGAATCTACCTTTAAAC+CGG | - | chr2_2:57039752-57039771 | Msa0259760:CDS | 30.0% | |
AAGATTCATTTCACTAGATG+TGG | + | chr2_2:57039978-57039997 | None:intergenic | 30.0% | |
CATTTACATCAATTGTGAGA+AGG | - | chr2_2:57040066-57040085 | Msa0259760:CDS | 30.0% | |
ATCAATTGTGAGAAGGAAAA+TGG | - | chr2_2:57040073-57040092 | Msa0259760:CDS | 30.0% | |
TGGCATTCAACACAAAATAT+TGG | - | chr2_2:57040093-57040112 | Msa0259760:intron | 30.0% | |
!! | TAATGTTTGGCCTTTTCAAA+CGG | - | chr2_2:57038693-57038712 | Msa0259760:CDS | 30.0% |
! | CATTTTATAGGAAATGGATG+TGG | - | chr2_2:57038806-57038825 | Msa0259760:CDS | 30.0% |
!!! | GAAGTCATCATCTTTTTTGT+GGG | + | chr2_2:57039062-57039081 | None:intergenic | 30.0% |
!!! | AGAAGTCATCATCTTTTTTG+TGG | + | chr2_2:57039063-57039082 | None:intergenic | 30.0% |
!!! | TTTTTTGATAAGCAAAGGCA+AGG | + | chr2_2:57039251-57039270 | None:intergenic | 30.0% |
AAAACATCTCTTCAAATCGT+TGG | - | chr2_2:57039394-57039413 | Msa0259760:intron | 30.0% | |
TTGACATAATACCATTCTTC+AGG | - | chr2_2:57039433-57039452 | Msa0259760:intron | 30.0% | |
TGACATAATACCATTCTTCA+GGG | - | chr2_2:57039434-57039453 | Msa0259760:intron | 30.0% | |
GTATCAACAACAAATGTTGA+GGG | + | chr2_2:57039485-57039504 | None:intergenic | 30.0% | |
AGTAGAATCTACCTTTAAAC+CGG | - | chr2_2:57039752-57039771 | Msa0259760:CDS | 30.0% | |
AAGATTCATTTCACTAGATG+TGG | + | chr2_2:57039978-57039997 | None:intergenic | 30.0% | |
CATTTACATCAATTGTGAGA+AGG | - | chr2_2:57040066-57040085 | Msa0259760:CDS | 30.0% | |
ATCAATTGTGAGAAGGAAAA+TGG | - | chr2_2:57040073-57040092 | Msa0259760:CDS | 30.0% | |
TGGCATTCAACACAAAATAT+TGG | - | chr2_2:57040093-57040112 | Msa0259760:intron | 30.0% | |
TAGAGCTTGCATTATCTCTT+TGG | - | chr2_2:57038977-57038996 | Msa0259760:CDS | 35.0% | |
TATTATTCCTCGCTCAAACA+AGG | - | chr2_2:57039190-57039209 | Msa0259760:intron | 35.0% | |
CATATTCAAACCCTGAAGAA+TGG | + | chr2_2:57039447-57039466 | None:intergenic | 35.0% | |
GGTATCAACAACAAATGTTG+AGG | + | chr2_2:57039486-57039505 | None:intergenic | 35.0% | |
!! | AATGAGTGTTGAGTTTGGAA+GGG | + | chr2_2:57039528-57039547 | None:intergenic | 35.0% |
GAAGTACAACAAAACAAGAG+AGG | - | chr2_2:57039899-57039918 | Msa0259760:CDS | 35.0% | |
ACATCAGGAAGCAATTCATT+TGG | + | chr2_2:57040016-57040035 | None:intergenic | 35.0% | |
! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_2:57040030-57040049 | Msa0259760:CDS | 35.0% |
TAGAGCTTGCATTATCTCTT+TGG | - | chr2_2:57038977-57038996 | Msa0259760:CDS | 35.0% | |
TATTATTCCTCGCTCAAACA+AGG | - | chr2_2:57039190-57039209 | Msa0259760:intron | 35.0% | |
CATATTCAAACCCTGAAGAA+TGG | + | chr2_2:57039447-57039466 | None:intergenic | 35.0% | |
GGTATCAACAACAAATGTTG+AGG | + | chr2_2:57039486-57039505 | None:intergenic | 35.0% | |
!! | AATGAGTGTTGAGTTTGGAA+GGG | + | chr2_2:57039528-57039547 | None:intergenic | 35.0% |
GAAGTACAACAAAACAAGAG+AGG | - | chr2_2:57039899-57039918 | Msa0259760:CDS | 35.0% | |
ACATCAGGAAGCAATTCATT+TGG | + | chr2_2:57040016-57040035 | None:intergenic | 35.0% | |
! | TGATGTCAAAGTGAAAGTGT+CGG | - | chr2_2:57040030-57040049 | Msa0259760:CDS | 35.0% |
!! | CATAAGAGAGTGCCAGATAT+TGG | + | chr2_2:57038659-57038678 | None:intergenic | 40.0% |
CAATATCTGGCACTCTCTTA+TGG | - | chr2_2:57038657-57038676 | Msa0259760:CDS | 40.0% | |
AGCAGTCATGGGATAATGTT+TGG | - | chr2_2:57038680-57038699 | Msa0259760:CDS | 40.0% | |
AAAGGAAGTCTTCATCTTCG+TGG | + | chr2_2:57038851-57038870 | None:intergenic | 40.0% | |
AGACTTCCTTTGTGACTTCA+TGG | - | chr2_2:57038860-57038879 | Msa0259760:CDS | 40.0% | |
ATCAGAGACTACAATACGCT+CGG | + | chr2_2:57038922-57038941 | None:intergenic | 40.0% | |
! | AGAGATAATGCAAGCTCTAG+AGG | + | chr2_2:57038976-57038995 | None:intergenic | 40.0% |
!!! | ATCTTTTTTGTGGGACAACG+TGG | + | chr2_2:57039053-57039072 | None:intergenic | 40.0% |
! | GACTTCTGAGAATCGAAACA+TGG | - | chr2_2:57039076-57039095 | Msa0259760:CDS | 40.0% |
TAGATCTCTAGATCACGCAA+TGG | - | chr2_2:57039115-57039134 | Msa0259760:intron | 40.0% | |
AGATCTCTAGATCACGCAAT+GGG | - | chr2_2:57039116-57039135 | Msa0259760:intron | 40.0% | |
! | ATTAGTACCTTGTTTGAGCG+AGG | + | chr2_2:57039200-57039219 | None:intergenic | 40.0% |
!! | CAATGAGTGTTGAGTTTGGA+AGG | + | chr2_2:57039529-57039548 | None:intergenic | 40.0% |
!! | CTTGCAATGAGTGTTGAGTT+TGG | + | chr2_2:57039533-57039552 | None:intergenic | 40.0% |
CTAATATCGGTCCGGTTTAA+AGG | + | chr2_2:57039766-57039785 | None:intergenic | 40.0% | |
GACACTTTCACTTTGACATC+AGG | + | chr2_2:57040031-57040050 | None:intergenic | 40.0% | |
CCAAGAGTTGAATTGCCAAA+CGG | + | chr2_2:57040166-57040185 | None:intergenic | 40.0% | |
!! | AAATTTGGTGATGCGAACCT+TGG | + | chr2_2:57040203-57040222 | None:intergenic | 40.0% |
!! | CATAAGAGAGTGCCAGATAT+TGG | + | chr2_2:57038659-57038678 | None:intergenic | 40.0% |
CAATATCTGGCACTCTCTTA+TGG | - | chr2_2:57038657-57038676 | Msa0259760:CDS | 40.0% | |
AGCAGTCATGGGATAATGTT+TGG | - | chr2_2:57038680-57038699 | Msa0259760:CDS | 40.0% | |
AAAGGAAGTCTTCATCTTCG+TGG | + | chr2_2:57038851-57038870 | None:intergenic | 40.0% | |
AGACTTCCTTTGTGACTTCA+TGG | - | chr2_2:57038860-57038879 | Msa0259760:CDS | 40.0% | |
ATCAGAGACTACAATACGCT+CGG | + | chr2_2:57038922-57038941 | None:intergenic | 40.0% | |
! | AGAGATAATGCAAGCTCTAG+AGG | + | chr2_2:57038976-57038995 | None:intergenic | 40.0% |
!!! | ATCTTTTTTGTGGGACAACG+TGG | + | chr2_2:57039053-57039072 | None:intergenic | 40.0% |
! | GACTTCTGAGAATCGAAACA+TGG | - | chr2_2:57039076-57039095 | Msa0259760:CDS | 40.0% |
TAGATCTCTAGATCACGCAA+TGG | - | chr2_2:57039115-57039134 | Msa0259760:intron | 40.0% | |
AGATCTCTAGATCACGCAAT+GGG | - | chr2_2:57039116-57039135 | Msa0259760:intron | 40.0% | |
! | ATTAGTACCTTGTTTGAGCG+AGG | + | chr2_2:57039200-57039219 | None:intergenic | 40.0% |
!! | CAATGAGTGTTGAGTTTGGA+AGG | + | chr2_2:57039529-57039548 | None:intergenic | 40.0% |
!! | CTTGCAATGAGTGTTGAGTT+TGG | + | chr2_2:57039533-57039552 | None:intergenic | 40.0% |
CTAATATCGGTCCGGTTTAA+AGG | + | chr2_2:57039766-57039785 | None:intergenic | 40.0% | |
GACACTTTCACTTTGACATC+AGG | + | chr2_2:57040031-57040050 | None:intergenic | 40.0% | |
CCAAGAGTTGAATTGCCAAA+CGG | + | chr2_2:57040166-57040185 | None:intergenic | 40.0% | |
!! | AAATTTGGTGATGCGAACCT+TGG | + | chr2_2:57040203-57040222 | None:intergenic | 40.0% |
ACTCTCTTATGGAGCAGTCA+TGG | - | chr2_2:57038668-57038687 | Msa0259760:CDS | 45.0% | |
CTCTCTTATGGAGCAGTCAT+GGG | - | chr2_2:57038669-57038688 | Msa0259760:CDS | 45.0% | |
GAACGCAGTACCGTTTGAAA+AGG | + | chr2_2:57038706-57038725 | None:intergenic | 45.0% | |
TGTAGTCTCTGATGAGTCAC+CGG | - | chr2_2:57038929-57038948 | Msa0259760:CDS | 45.0% | |
!! | AATGCAAGCTCTAGAGGATG+TGG | + | chr2_2:57038970-57038989 | None:intergenic | 45.0% |
AGCTGGTAACAGTATCTTCG+CGG | + | chr2_2:57039009-57039028 | None:intergenic | 45.0% | |
TTGGATTTGGACATCACAGC+TGG | + | chr2_2:57039026-57039045 | None:intergenic | 45.0% | |
! | ACAACGTGGTGGTTTGGATT+TGG | + | chr2_2:57039039-57039058 | None:intergenic | 45.0% |
!!! | TTTTTTGTGGGACAACGTGG+TGG | + | chr2_2:57039050-57039069 | None:intergenic | 45.0% |
AAGGGAAGAATGAGGAGGTT+TGG | + | chr2_2:57039510-57039529 | None:intergenic | 45.0% | |
TTTGGAAGGGAAGAATGAGG+AGG | + | chr2_2:57039515-57039534 | None:intergenic | 45.0% | |
GAGTTTGGAAGGGAAGAATG+AGG | + | chr2_2:57039518-57039537 | None:intergenic | 45.0% | |
TGGGATGTCTAATATCGGTC+CGG | + | chr2_2:57039774-57039793 | None:intergenic | 45.0% | |
GACAAAGCTTCTATCGTTGC+TGG | - | chr2_2:57039830-57039849 | Msa0259760:CDS | 45.0% | |
CTAACTCCTTCACTCGTTTC+TGG | + | chr2_2:57039880-57039899 | None:intergenic | 45.0% | |
CCGTTTGGCAATTCAACTCT+TGG | - | chr2_2:57040163-57040182 | Msa0259760:intron | 45.0% | |
TGGCATAACTATCATCGCCA+AGG | - | chr2_2:57040183-57040202 | Msa0259760:intron | 45.0% | |
ACTCTCTTATGGAGCAGTCA+TGG | - | chr2_2:57038668-57038687 | Msa0259760:CDS | 45.0% | |
CTCTCTTATGGAGCAGTCAT+GGG | - | chr2_2:57038669-57038688 | Msa0259760:CDS | 45.0% | |
GAACGCAGTACCGTTTGAAA+AGG | + | chr2_2:57038706-57038725 | None:intergenic | 45.0% | |
TGTAGTCTCTGATGAGTCAC+CGG | - | chr2_2:57038929-57038948 | Msa0259760:CDS | 45.0% | |
!! | AATGCAAGCTCTAGAGGATG+TGG | + | chr2_2:57038970-57038989 | None:intergenic | 45.0% |
AGCTGGTAACAGTATCTTCG+CGG | + | chr2_2:57039009-57039028 | None:intergenic | 45.0% | |
TTGGATTTGGACATCACAGC+TGG | + | chr2_2:57039026-57039045 | None:intergenic | 45.0% | |
! | ACAACGTGGTGGTTTGGATT+TGG | + | chr2_2:57039039-57039058 | None:intergenic | 45.0% |
!!! | TTTTTTGTGGGACAACGTGG+TGG | + | chr2_2:57039050-57039069 | None:intergenic | 45.0% |
AAGGGAAGAATGAGGAGGTT+TGG | + | chr2_2:57039510-57039529 | None:intergenic | 45.0% | |
TTTGGAAGGGAAGAATGAGG+AGG | + | chr2_2:57039515-57039534 | None:intergenic | 45.0% | |
GAGTTTGGAAGGGAAGAATG+AGG | + | chr2_2:57039518-57039537 | None:intergenic | 45.0% | |
TGGGATGTCTAATATCGGTC+CGG | + | chr2_2:57039774-57039793 | None:intergenic | 45.0% | |
GACAAAGCTTCTATCGTTGC+TGG | - | chr2_2:57039830-57039849 | Msa0259760:CDS | 45.0% | |
CTAACTCCTTCACTCGTTTC+TGG | + | chr2_2:57039880-57039899 | None:intergenic | 45.0% | |
CCGTTTGGCAATTCAACTCT+TGG | - | chr2_2:57040163-57040182 | Msa0259760:intron | 45.0% | |
TGGCATAACTATCATCGCCA+AGG | - | chr2_2:57040183-57040202 | Msa0259760:intron | 45.0% | |
GCTGTGCCATGAAGTCACAA+AGG | + | chr2_2:57038869-57038888 | None:intergenic | 50.0% | |
!! | CAAGCTCTAGAGGATGTGGA+CGG | + | chr2_2:57038966-57038985 | None:intergenic | 50.0% |
TAGATCACGCAATGGGAGAG+AGG | - | chr2_2:57039123-57039142 | Msa0259760:intron | 50.0% | |
ACGCAATGGGAGAGAGGAAA+AGG | - | chr2_2:57039129-57039148 | Msa0259760:intron | 50.0% | |
GGAAGAATGAGGAGGTTTGG+TGG | + | chr2_2:57039507-57039526 | None:intergenic | 50.0% | |
CTGGAGTTGCTCCACGTAAT+TGG | + | chr2_2:57039861-57039880 | None:intergenic | 50.0% | |
GCAACTCCAGAAACGAGTGA+AGG | - | chr2_2:57039871-57039890 | Msa0259760:CDS | 50.0% | |
AAACGGCAATGTGCTAGTGC+TGG | + | chr2_2:57040149-57040168 | None:intergenic | 50.0% | |
AGCACTAGCACATTGCCGTT+TGG | - | chr2_2:57040148-57040167 | Msa0259760:intron | 50.0% | |
GCTGTGCCATGAAGTCACAA+AGG | + | chr2_2:57038869-57038888 | None:intergenic | 50.0% | |
!! | CAAGCTCTAGAGGATGTGGA+CGG | + | chr2_2:57038966-57038985 | None:intergenic | 50.0% |
TAGATCACGCAATGGGAGAG+AGG | - | chr2_2:57039123-57039142 | Msa0259760:intron | 50.0% | |
ACGCAATGGGAGAGAGGAAA+AGG | - | chr2_2:57039129-57039148 | Msa0259760:intron | 50.0% | |
GGAAGAATGAGGAGGTTTGG+TGG | + | chr2_2:57039507-57039526 | None:intergenic | 50.0% | |
CTGGAGTTGCTCCACGTAAT+TGG | + | chr2_2:57039861-57039880 | None:intergenic | 50.0% | |
GCAACTCCAGAAACGAGTGA+AGG | - | chr2_2:57039871-57039890 | Msa0259760:CDS | 50.0% | |
AAACGGCAATGTGCTAGTGC+TGG | + | chr2_2:57040149-57040168 | None:intergenic | 50.0% | |
AGCACTAGCACATTGCCGTT+TGG | - | chr2_2:57040148-57040167 | Msa0259760:intron | 50.0% | |
TTCATGGCACAGCCAGTAGC+TGG | - | chr2_2:57038876-57038895 | Msa0259760:CDS | 55.0% | |
TGTGGGACAACGTGGTGGTT+TGG | + | chr2_2:57039045-57039064 | None:intergenic | 55.0% | |
TGCTGGCGCAACCAATTACG+TGG | - | chr2_2:57039847-57039866 | Msa0259760:CDS | 55.0% | |
TTCATGGCACAGCCAGTAGC+TGG | - | chr2_2:57038876-57038895 | Msa0259760:CDS | 55.0% | |
TGTGGGACAACGTGGTGGTT+TGG | + | chr2_2:57039045-57039064 | None:intergenic | 55.0% | |
TGCTGGCGCAACCAATTACG+TGG | - | chr2_2:57039847-57039866 | Msa0259760:CDS | 55.0% | |
GCAATGGCAGCTCCAGCTAC+TGG | + | chr2_2:57038891-57038910 | None:intergenic | 60.0% | |
ACGCTCGGTAGCAGCAGCAA+TGG | + | chr2_2:57038907-57038926 | None:intergenic | 60.0% | |
GTGGACGGAGGAAGAAGCTC+CGG | + | chr2_2:57038951-57038970 | None:intergenic | 60.0% | |
!! | GCTCTAGAGGATGTGGACGG+AGG | + | chr2_2:57038963-57038982 | None:intergenic | 60.0% |
GCAATGGCAGCTCCAGCTAC+TGG | + | chr2_2:57038891-57038910 | None:intergenic | 60.0% | |
ACGCTCGGTAGCAGCAGCAA+TGG | + | chr2_2:57038907-57038926 | None:intergenic | 60.0% | |
GTGGACGGAGGAAGAAGCTC+CGG | + | chr2_2:57038951-57038970 | None:intergenic | 60.0% | |
!! | GCTCTAGAGGATGTGGACGG+AGG | + | chr2_2:57038963-57038982 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 57038646 | 57040279 | 57038646 | ID=Msa0259760;Name=Msa0259760 |
chr2_2 | mRNA | 57038646 | 57040279 | 57038646 | ID=Msa0259760-mRNA-1;Parent=Msa0259760;Name=Msa0259760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=30|1|0.66|1|1|1|3|0|295 |
chr2_2 | exon | 57038646 | 57039098 | 57038646 | ID=Msa0259760-mRNA-1:exon:17285;Parent=Msa0259760-mRNA-1 |
chr2_2 | exon | 57039714 | 57040109 | 57039714 | ID=Msa0259760-mRNA-1:exon:17284;Parent=Msa0259760-mRNA-1 |
chr2_2 | exon | 57040211 | 57040279 | 57040211 | ID=Msa0259760-mRNA-1:exon:17283;Parent=Msa0259760-mRNA-1 |
chr2_2 | five_prime_UTR | 57040250 | 57040279 | 57040250 | ID=Msa0259760-mRNA-1:five_prime_utr;Parent=Msa0259760-mRNA-1 |
chr2_2 | CDS | 57040211 | 57040249 | 57040211 | ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1 |
chr2_2 | CDS | 57039714 | 57040109 | 57039714 | ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1 |
chr2_2 | CDS | 57038646 | 57039098 | 57038646 | ID=Msa0259760-mRNA-1:cds;Parent=Msa0259760-mRNA-1 |
Gene Sequence |
Protein sequence |