AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533010 MtrunA17_Chr4g0006411 96.517 201 7 0 1 201 1 201 6.59e-148 410
Msa0533010 MtrunA17_Chr3g0116671 34.921 189 115 4 17 201 43 227 3.29e-26 102
Msa0533010 MtrunA17_Chr7g0258361 36.170 141 89 1 58 198 47 186 1.73e-25 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533010 AT3G08920.1 59.412 170 65 1 32 201 23 188 1.84e-72 219
Msa0533010 AT4G24750.1 42.000 150 85 2 52 201 82 229 1.22e-30 114
Msa0533010 AT2G42220.1 32.911 158 105 1 41 198 32 188 1.63e-25 99.8
Msa0533010 AT4G27700.1 27.564 156 78 5 50 183 66 208 5.09e-11 60.5

Find 45 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAGAAATGGGTTCATTT+TGG 0.181555 4_1:+7640433 Msa0533010:CDS
TGTTTATAGTTAGTTCTTAA+TGG 0.219190 4_1:+7640040 Msa0533010:five_prime_UTR
GCAATAATGCAGAACAAATT+TGG 0.244096 4_1:+7643253 Msa0533010:intron
TGCCTTCTCTCTTTCCCAAT+TGG 0.249345 4_1:-7640344 None:intergenic
TTGTCTAGCACTCATATTAT+TGG 0.250558 4_1:-7640230 None:intergenic
CATTTCTTAAGCAAAGTTAA+AGG 0.288252 4_1:-7640421 None:intergenic
ATAACTGTTGAAGCATCTTT+TGG 0.292122 4_1:-7640286 None:intergenic
CTTTAACTTTGCTTAAGAAA+TGG 0.296949 4_1:+7640422 Msa0533010:CDS
GCCTTCTCTCTTTCCCAATT+GGG 0.299652 4_1:-7640343 None:intergenic
TGGCATGTGGAGAAGGATTA+AGG 0.339086 4_1:+7640557 Msa0533010:CDS
GCAACTTCAAAGCTGTATAA+TGG 0.365682 4_1:+7641792 Msa0533010:CDS
TTTAACTTTGCTTAAGAAAT+GGG 0.367978 4_1:+7640423 Msa0533010:CDS
TTTGCATGTGCCAATGTTTG+TGG 0.398101 4_1:+7640381 Msa0533010:CDS
GTTGCCATATTGTGATGTTA+TGG 0.405469 4_1:-7640085 None:intergenic
AGAAATCTTGCATGGTTAGT+TGG 0.408746 4_1:+7641822 Msa0533010:CDS
TCTTGATGTTAGACCCAATT+GGG 0.414437 4_1:+7640330 Msa0533010:CDS
CAAGTGGAAAATGTTGTTCC+TGG 0.429047 4_1:+7640514 Msa0533010:CDS
GGTTATATTGGTGCTTGGAC+TGG 0.434850 4_1:+7640454 Msa0533010:CDS
ATATCCATAACATCACAATA+TGG 0.443614 4_1:+7640081 Msa0533010:exon
TTCTTGATGTTAGACCCAAT+TGG 0.445913 4_1:+7640329 Msa0533010:CDS
CTCTGAGTTTCTTAGTCAAG+TGG 0.449525 4_1:+7640498 Msa0533010:CDS
GCTAGACAACTCATAGAATC+TGG 0.477325 4_1:+7640244 Msa0533010:CDS
AATCTTGCATGGTTAGTTGG+AGG 0.498346 4_1:+7641825 Msa0533010:CDS
GTTCTTGTGGCATGTGGAGA+AGG 0.499010 4_1:+7640550 Msa0533010:CDS
TCCTTATCTTCCACAAACAT+TGG 0.502436 4_1:-7640391 None:intergenic
GATGATTTCTCAGAAGTTGA+AGG 0.505639 4_1:+7641867 Msa0533010:CDS
GAGGTTAGACCAATGGCCTA+TGG 0.535553 4_1:+7643278 Msa0533010:CDS
TTTGTGGAAGATAAGGATAA+TGG 0.538416 4_1:+7640397 Msa0533010:CDS
TCAACAGTTATGAACTCAGA+AGG 0.546363 4_1:+7640298 Msa0533010:CDS
AGAACCTTGGTATCTTTACC+AGG 0.556206 4_1:-7640532 None:intergenic
ATGCAGAACAAATTTGGAGG+AGG 0.559973 4_1:+7643259 Msa0533010:intron
ACCAAGGTTCTTGTGGCATG+TGG 0.563369 4_1:+7640544 Msa0533010:CDS
TGTCGCAGCTGTTGAACCAT+AGG 0.564160 4_1:-7643294 None:intergenic
TAAGAACTAACTATAAACAT+TGG 0.565441 4_1:-7640036 None:intergenic
TCCACATGCCACAAGAACCT+TGG 0.571858 4_1:-7640545 None:intergenic
GCCAATGTTTGTGGAAGATA+AGG 0.571971 4_1:+7640390 Msa0533010:CDS
TAAAGATACCAAGGTTCTTG+TGG 0.577211 4_1:+7640537 Msa0533010:CDS
GCTGTTGAACCATAGGCCAT+TGG 0.582488 4_1:-7643287 None:intergenic
TTTGGAGGAGGTTAGACCAA+TGG 0.590737 4_1:+7643271 Msa0533010:CDS
AGAGAGAAGGCACATGTGAA+AGG 0.600594 4_1:+7640355 Msa0533010:CDS
ATAATGCAGAACAAATTTGG+AGG 0.602964 4_1:+7643256 Msa0533010:intron
GAGGTTACAGAAATCTTGCA+TGG 0.606184 4_1:+7641814 Msa0533010:CDS
ACCCAATTGGGAAAGAGAGA+AGG 0.609153 4_1:+7640342 Msa0533010:CDS
ACTTCAAAGCTGTATAATGG+AGG 0.653802 4_1:+7641795 Msa0533010:CDS
TGTTCCTGGTAAAGATACCA+AGG 0.656791 4_1:+7640528 Msa0533010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATCATATACTAT+AGG - chr4_1:7641318-7641337 None:intergenic 10.0%
!!! ATGATTTTATATTGTAAATT+GGG - chr4_1:7641684-7641703 None:intergenic 10.0%
!!! AATGATTTTATATTGTAAAT+TGG - chr4_1:7641685-7641704 None:intergenic 10.0%
!! AAAAACTAATATAATCTAAT+AGG - chr4_1:7642484-7642503 None:intergenic 10.0%
!!! AACGATTTTATACAATATTA+AGG + chr4_1:7640969-7640988 Msa0533010:intron 15.0%
!! ATAAAAAAGACAATTGAAAT+AGG + chr4_1:7641331-7641350 Msa0533010:intron 15.0%
!! ATATTTCATAAATTGTAAGA+TGG - chr4_1:7641443-7641462 None:intergenic 15.0%
!! ATAGAACAAGTTTATTATTA+TGG + chr4_1:7641713-7641732 Msa0533010:intron 15.0%
!!! TACAATTTAAAGTACTAATT+TGG - chr4_1:7642458-7642477 None:intergenic 15.0%
!! AAATTAGTACTTTAAATTGT+AGG + chr4_1:7642457-7642476 Msa0533010:intron 15.0%
!! TAAGAACTAACTATAAACAT+TGG - chr4_1:7640039-7640058 None:intergenic 20.0%
!!! TGTTTATAGTTAGTTCTTAA+TGG + chr4_1:7640040-7640059 Msa0533010:five_prime_UTR 20.0%
!!! TTTAACTTTGCTTAAGAAAT+GGG + chr4_1:7640423-7640442 Msa0533010:CDS 20.0%
!! AAACTTAAGTGCATTTATTT+AGG + chr4_1:7640639-7640658 Msa0533010:intron 20.0%
!!! TGAATTTTGAGAAAATTAAG+TGG + chr4_1:7640733-7640752 Msa0533010:intron 20.0%
!!! AAAACTACGTTTTAAGTTTT+TGG + chr4_1:7641054-7641073 Msa0533010:intron 20.0%
!!! TTTAATTGAAGTAGGTTTTT+TGG + chr4_1:7641110-7641129 Msa0533010:intron 20.0%
!! TGATTTATTTAGAGACTATA+AGG + chr4_1:7642159-7642178 Msa0533010:intron 20.0%
!! TACTAATATATTCGAGTAAA+TGG - chr4_1:7642215-7642234 None:intergenic 20.0%
!! ATAAGCAAATACTAAATAGT+TGG + chr4_1:7642520-7642539 Msa0533010:intron 20.0%
!! ATTTGATGAAAAATCTATAG+CGG - chr4_1:7642639-7642658 None:intergenic 20.0%
!! TTAATATCATATTGGAGTAT+TGG + chr4_1:7642711-7642730 Msa0533010:intron 20.0%
!!! CAAACAAATTTTTTAACCTT+AGG - chr4_1:7643111-7643130 None:intergenic 20.0%
!!! CTAAGGTTAAAAAATTTGTT+TGG + chr4_1:7643109-7643128 Msa0533010:intron 20.0%
! ATATCCATAACATCACAATA+TGG + chr4_1:7640081-7640100 Msa0533010:exon 25.0%
! CATTTCTTAAGCAAAGTTAA+AGG - chr4_1:7640424-7640443 None:intergenic 25.0%
!! CTTTAACTTTGCTTAAGAAA+TGG + chr4_1:7640422-7640441 Msa0533010:CDS 25.0%
!!! TTGTTTTGTTTTGCAGAATA+TGG + chr4_1:7640600-7640619 Msa0533010:intron 25.0%
! AACTTGAAACATAGATTATG+TGG + chr4_1:7640681-7640700 Msa0533010:intron 25.0%
! ATTGTATAAAATCGTTGTCA+TGG - chr4_1:7640965-7640984 None:intergenic 25.0%
!! TTCTCTTCAAAAGAAGTTTT+TGG + chr4_1:7641083-7641102 Msa0533010:intron 25.0%
! TAATTACAAAGGAAGTGAAT+TGG - chr4_1:7641495-7641514 None:intergenic 25.0%
!!! TAAACCTTTGTTTTACACAA+GGG - chr4_1:7641546-7641565 None:intergenic 25.0%
! GATACAACCTATAATTTCAA+AGG - chr4_1:7642546-7642565 None:intergenic 25.0%
! ACATTATCAGTATGTCAAAA+TGG + chr4_1:7642579-7642598 Msa0533010:intron 25.0%
! TTTGATGAAAAATCTATAGC+GGG - chr4_1:7642638-7642657 None:intergenic 25.0%
! CAAATTCATCCAAAATATGA+CGG + chr4_1:7642686-7642705 Msa0533010:intron 25.0%
!! ATATTAACTCCGTCATATTT+TGG - chr4_1:7642698-7642717 None:intergenic 25.0%
! TGATTTAGTTGAAATCTAGT+GGG - chr4_1:7643156-7643175 None:intergenic 25.0%
! ATGATTTAGTTGAAATCTAG+TGG - chr4_1:7643157-7643176 None:intergenic 25.0%
TTGTCTAGCACTCATATTAT+TGG - chr4_1:7640233-7640252 None:intergenic 30.0%
!! ATAACTGTTGAAGCATCTTT+TGG - chr4_1:7640289-7640308 None:intergenic 30.0%
TTTGTGGAAGATAAGGATAA+TGG + chr4_1:7640397-7640416 Msa0533010:CDS 30.0%
!! CTTAAGAAATGGGTTCATTT+TGG + chr4_1:7640433-7640452 Msa0533010:CDS 30.0%
!!! TGGGTTCATTTTGGTTATAT+TGG + chr4_1:7640442-7640461 Msa0533010:CDS 30.0%
!!! ATTTTGGTTATATTGGTGCT+TGG + chr4_1:7640449-7640468 Msa0533010:CDS 30.0%
GAAGGATTAAGGTAAATATG+TGG + chr4_1:7640568-7640587 Msa0533010:intron 30.0%
TTGGTGCATTTAATTGAAGT+AGG + chr4_1:7641102-7641121 Msa0533010:intron 30.0%
AACAATGACTAATCGTTGTT+TGG - chr4_1:7641277-7641296 None:intergenic 30.0%
!! CAATTGAAATAGGTTGCTTT+TGG + chr4_1:7641341-7641360 Msa0533010:intron 30.0%
!!! AAATAGGTTGCTTTTGGTTT+TGG + chr4_1:7641347-7641366 Msa0533010:intron 30.0%
!! GTAAAGGCTGTTGATTTATT+TGG + chr4_1:7641402-7641421 Msa0533010:intron 30.0%
TCACTTCCTTTGTAATTAAC+AGG + chr4_1:7641497-7641516 Msa0533010:intron 30.0%
AATCAGCCTGTTAATTACAA+AGG - chr4_1:7641506-7641525 None:intergenic 30.0%
!!! GTAAACCTTTGTTTTACACA+AGG - chr4_1:7641547-7641566 None:intergenic 30.0%
ATGGCAATGAAGCAAAATAT+TGG + chr4_1:7641732-7641751 Msa0533010:intron 30.0%
CAATGAAGCAAAATATTGGT+TGG + chr4_1:7641736-7641755 Msa0533010:intron 30.0%
AAGTTGAAGTATGCTACAAT+TGG + chr4_1:7641897-7641916 Msa0533010:intron 30.0%
ATGACTATTTACTCACAGTT+TGG - chr4_1:7641962-7641981 None:intergenic 30.0%
!! ATGTCATCGATTAGTTTGTT+TGG - chr4_1:7642096-7642115 None:intergenic 30.0%
AATCGATGACATGTTTGATT+TGG + chr4_1:7642104-7642123 Msa0533010:intron 30.0%
TGAGTAAACACTCCAAAATT+GGG + chr4_1:7642386-7642405 Msa0533010:intron 30.0%
!! TAGTTGGCCTTTGAAATTAT+AGG + chr4_1:7642536-7642555 Msa0533010:intron 30.0%
TGACGGAGTTAATATCATAT+TGG + chr4_1:7642703-7642722 Msa0533010:intron 30.0%
AGTGAAAAGAGATCAACAAA+CGG - chr4_1:7642882-7642901 None:intergenic 30.0%
AAATTCGTTTCCAAAACTTC+GGG - chr4_1:7643071-7643090 None:intergenic 30.0%
CAAATTCGTTTCCAAAACTT+CGG - chr4_1:7643072-7643091 None:intergenic 30.0%
AGATTTCAACTAAATCATCG+AGG + chr4_1:7643159-7643178 Msa0533010:intron 30.0%
! ACATCTATCATCTCTTCTTT+TGG + chr4_1:7643229-7643248 Msa0533010:intron 30.0%
GCAATAATGCAGAACAAATT+TGG + chr4_1:7643253-7643272 Msa0533010:intron 30.0%
ATAATGCAGAACAAATTTGG+AGG + chr4_1:7643256-7643275 Msa0533010:intron 30.0%
GTTGCCATATTGTGATGTTA+TGG - chr4_1:7640088-7640107 None:intergenic 35.0%
TCAACAGTTATGAACTCAGA+AGG + chr4_1:7640298-7640317 Msa0533010:CDS 35.0%
TTCTTGATGTTAGACCCAAT+TGG + chr4_1:7640329-7640348 Msa0533010:CDS 35.0%
TCTTGATGTTAGACCCAATT+GGG + chr4_1:7640330-7640349 Msa0533010:CDS 35.0%
TCCTTATCTTCCACAAACAT+TGG - chr4_1:7640394-7640413 None:intergenic 35.0%
TAAAGATACCAAGGTTCTTG+TGG + chr4_1:7640537-7640556 Msa0533010:CDS 35.0%
GCAAACTCGTATTTGCATAA+GGG - chr4_1:7640929-7640948 None:intergenic 35.0%
TGCAAACTCGTATTTGCATA+AGG - chr4_1:7640930-7640949 None:intergenic 35.0%
TATAAAATCGTTGTCATGGC+GGG - chr4_1:7640961-7640980 None:intergenic 35.0%
GTATAAAATCGTTGTCATGG+CGG - chr4_1:7640962-7640981 None:intergenic 35.0%
!!! GCATTCTCGTTTTAAAAGAC+TGG + chr4_1:7640997-7641016 Msa0533010:intron 35.0%
TAAACAAGTGATCGAGAGTT+TGG + chr4_1:7641176-7641195 Msa0533010:intron 35.0%
ATAGGAAGAAAATCCAGTCA+GGG + chr4_1:7641213-7641232 Msa0533010:intron 35.0%
AACACACAATTTCTTAAGCC+AGG + chr4_1:7641373-7641392 Msa0533010:intron 35.0%
ACACACAATTTCTTAAGCCA+GGG + chr4_1:7641374-7641393 Msa0533010:intron 35.0%
AATTTCTTAAGCCAGGGATA+TGG + chr4_1:7641380-7641399 Msa0533010:intron 35.0%
!! AGGCTGATTCTTTTTCTTGT+TGG + chr4_1:7641517-7641536 Msa0533010:intron 35.0%
GTTTCCCTTGTGTAAAACAA+AGG + chr4_1:7641539-7641558 Msa0533010:intron 35.0%
TTCTTGTTGAGTGACTATTC+AGG + chr4_1:7641760-7641779 Msa0533010:intron 35.0%
GCAACTTCAAAGCTGTATAA+TGG + chr4_1:7641792-7641811 Msa0533010:CDS 35.0%
ACTTCAAAGCTGTATAATGG+AGG + chr4_1:7641795-7641814 Msa0533010:CDS 35.0%
AGAAATCTTGCATGGTTAGT+TGG + chr4_1:7641822-7641841 Msa0533010:CDS 35.0%
GATGATTTCTCAGAAGTTGA+AGG + chr4_1:7641867-7641886 Msa0533010:CDS 35.0%
TTGAAGTATGCTACAATTGG+AGG + chr4_1:7641900-7641919 Msa0533010:intron 35.0%
! ACATTCCTAAGTGTGTTTTC+TGG + chr4_1:7642041-7642060 Msa0533010:intron 35.0%
TATTCGAGTAAATGGTCACT+TGG - chr4_1:7642207-7642226 None:intergenic 35.0%
AGAAGCTTACACGTTCAATA+GGG - chr4_1:7642275-7642294 None:intergenic 35.0%
TAGAAGCTTACACGTTCAAT+AGG - chr4_1:7642276-7642295 None:intergenic 35.0%
GTGAGTAAACACTCCAAAAT+TGG + chr4_1:7642385-7642404 Msa0533010:intron 35.0%
TATATTCCGAAACCGAACTA+TGG + chr4_1:7642789-7642808 Msa0533010:intron 35.0%
TGTATACCATAGTTCGGTTT+CGG - chr4_1:7642798-7642817 None:intergenic 35.0%
AGGTCATGTATACCATAGTT+CGG - chr4_1:7642804-7642823 None:intergenic 35.0%
!! CGATGGAAGTATCAGAAAAA+TGG + chr4_1:7642964-7642983 Msa0533010:intron 35.0%
!!! CGAAGTTTTGGAAACGAATT+TGG + chr4_1:7643070-7643089 Msa0533010:intron 35.0%
!!! GTTTTGGAAACGAATTTGGA+AGG + chr4_1:7643074-7643093 Msa0533010:intron 35.0%
GCTAGACAACTCATAGAATC+TGG + chr4_1:7640244-7640263 Msa0533010:CDS 40.0%
TTTGCATGTGCCAATGTTTG+TGG + chr4_1:7640381-7640400 Msa0533010:CDS 40.0%
GCCAATGTTTGTGGAAGATA+AGG + chr4_1:7640390-7640409 Msa0533010:CDS 40.0%
CTCTGAGTTTCTTAGTCAAG+TGG + chr4_1:7640498-7640517 Msa0533010:CDS 40.0%
CAAGTGGAAAATGTTGTTCC+TGG + chr4_1:7640514-7640533 Msa0533010:CDS 40.0%
TGTTCCTGGTAAAGATACCA+AGG + chr4_1:7640528-7640547 Msa0533010:CDS 40.0%
AGAACCTTGGTATCTTTACC+AGG - chr4_1:7640535-7640554 None:intergenic 40.0%
AGATTTGAATTTGTCCCCTG+AGG + chr4_1:7640783-7640802 Msa0533010:intron 40.0%
GGTCAAACTCGTATTTGCAT+AGG - chr4_1:7640868-7640887 None:intergenic 40.0%
ATAAAATCGTTGTCATGGCG+GGG - chr4_1:7640960-7640979 None:intergenic 40.0%
ATTCCACTCGGACAAACATA+TGG - chr4_1:7641141-7641160 None:intergenic 40.0%
ATATGTTTGTCCGAGTGGAA+TGG + chr4_1:7641140-7641159 Msa0533010:intron 40.0%
TATGTTTGTCCGAGTGGAAT+GGG + chr4_1:7641141-7641160 Msa0533010:intron 40.0%
TTGGTTTCGAACTCTTGCAT+AGG + chr4_1:7641195-7641214 Msa0533010:intron 40.0%
CATAGGAAGAAAATCCAGTC+AGG + chr4_1:7641212-7641231 Msa0533010:intron 40.0%
TAGGAAGAAAATCCAGTCAG+GGG + chr4_1:7641214-7641233 Msa0533010:intron 40.0%
TTTAATTCTATCCCCCTGAC+TGG - chr4_1:7641229-7641248 None:intergenic 40.0%
GCTTGTTTGACACACAATGT+GGG - chr4_1:7641252-7641271 None:intergenic 40.0%
! AGCTTGTTTGACACACAATG+TGG - chr4_1:7641253-7641272 None:intergenic 40.0%
TTAAGCCAGGGATATGGTAA+AGG + chr4_1:7641386-7641405 Msa0533010:intron 40.0%
GAGGTTACAGAAATCTTGCA+TGG + chr4_1:7641814-7641833 Msa0533010:CDS 40.0%
! AATCTTGCATGGTTAGTTGG+AGG + chr4_1:7641825-7641844 Msa0533010:CDS 40.0%
CAACTGAAGGAAGTAGTAAG+AGG - chr4_1:7641928-7641947 None:intergenic 40.0%
GAATGTGTCTCCATATCGAT+CGG - chr4_1:7642068-7642087 None:intergenic 40.0%
CAATTAATGCGCTTGCAACA+AGG - chr4_1:7642302-7642321 None:intergenic 40.0%
CACTTCTGTAAGAATCTGAC+AGG - chr4_1:7642368-7642387 None:intergenic 40.0%
! CACGTTCAAAGTCCCAATTT+TGG - chr4_1:7642401-7642420 None:intergenic 40.0%
GTATACATGACCTTGATCAG+TGG + chr4_1:7642811-7642830 Msa0533010:intron 40.0%
TTGACAGTAACTCCAAGCAA+TGG + chr4_1:7642850-7642869 Msa0533010:intron 40.0%
AAACGGTACATTCCATTGCT+TGG - chr4_1:7642865-7642884 None:intergenic 40.0%
!! CAAGGGAGTGTTTAAAATGC+TGG - chr4_1:7642918-7642937 None:intergenic 40.0%
AAACACTCCCTTGTTCAGTT+CGG + chr4_1:7642925-7642944 Msa0533010:intron 40.0%
GAAACGAATTTGGAAGGCAA+AGG + chr4_1:7643080-7643099 Msa0533010:intron 40.0%
ATGCAGAACAAATTTGGAGG+AGG + chr4_1:7643259-7643278 Msa0533010:intron 40.0%
ACCCAATTGGGAAAGAGAGA+AGG + chr4_1:7640342-7640361 Msa0533010:CDS 45.0%
GCCTTCTCTCTTTCCCAATT+GGG - chr4_1:7640346-7640365 None:intergenic 45.0%
TGCCTTCTCTCTTTCCCAAT+TGG - chr4_1:7640347-7640366 None:intergenic 45.0%
! AGAGAGAAGGCACATGTGAA+AGG + chr4_1:7640355-7640374 Msa0533010:CDS 45.0%
! GGTTATATTGGTGCTTGGAC+TGG + chr4_1:7640454-7640473 Msa0533010:CDS 45.0%
TGGCATGTGGAGAAGGATTA+AGG + chr4_1:7640557-7640576 Msa0533010:CDS 45.0%
AATTTGTCCCCTGAGGTTAC+TGG + chr4_1:7640790-7640809 Msa0533010:intron 45.0%
ACTCCTATCCAGTAACCTCA+GGG - chr4_1:7640801-7640820 None:intergenic 45.0%
AACTCCTATCCAGTAACCTC+AGG - chr4_1:7640802-7640821 None:intergenic 45.0%
GCATAAGGGATATGACTCTG+TGG - chr4_1:7640915-7640934 None:intergenic 45.0%
CACTCGGACAAACATATGGT+CGG - chr4_1:7641137-7641156 None:intergenic 45.0%
AGGAAGAAAATCCAGTCAGG+GGG + chr4_1:7641215-7641234 Msa0533010:intron 45.0%
AACAGCCTTTACCATATCCC+TGG - chr4_1:7641394-7641413 None:intergenic 45.0%
! GGAGAAGTATGAGCAACTGA+AGG - chr4_1:7641941-7641960 None:intergenic 45.0%
TCGGTCCAGAAAACACACTT+AGG - chr4_1:7642049-7642068 None:intergenic 45.0%
! GTTTTCTGGACCGATCGATA+TGG + chr4_1:7642055-7642074 Msa0533010:intron 45.0%
AGGAGACGCTGACATATTCA+AGG + chr4_1:7642179-7642198 Msa0533010:intron 45.0%
TCCCACTTTGCAATACCAAG+TGG + chr4_1:7642748-7642767 Msa0533010:intron 45.0%
GCCACTTGGTATTGCAAAGT+GGG - chr4_1:7642752-7642771 None:intergenic 45.0%
AGCCACTTGGTATTGCAAAG+TGG - chr4_1:7642753-7642772 None:intergenic 45.0%
ACATGACCTTGATCAGTGGA+TGG + chr4_1:7642815-7642834 Msa0533010:intron 45.0%
CTGAAACCATCCACTGATCA+AGG - chr4_1:7642824-7642843 None:intergenic 45.0%
!! GGGAGTGTTTAAAATGCTGG+CGG - chr4_1:7642915-7642934 None:intergenic 45.0%
TCTGCTACCGAACTGAACAA+GGG - chr4_1:7642935-7642954 None:intergenic 45.0%
TTCAGTTCGGTAGCAGAGAA+TGG + chr4_1:7642938-7642957 Msa0533010:intron 45.0%
!! AAACTTCGGGTTGTTCATGC+TGG - chr4_1:7643058-7643077 None:intergenic 45.0%
! GCATGAACAACCCGAAGTTT+TGG + chr4_1:7643058-7643077 Msa0533010:intron 45.0%
! TCGCACAACACACATTGGTT+CGG - chr4_1:7643195-7643214 None:intergenic 45.0%
AACCAATGTGTGTTGTGCGA+AGG + chr4_1:7643195-7643214 Msa0533010:intron 45.0%
AACCTTCGCACAACACACAT+TGG - chr4_1:7643200-7643219 None:intergenic 45.0%
GTTGTGCGAAGGTTAAGTAG+AGG + chr4_1:7643206-7643225 Msa0533010:intron 45.0%
TTTGGAGGAGGTTAGACCAA+TGG + chr4_1:7643271-7643290 Msa0533010:CDS 45.0%
ACCAAGGTTCTTGTGGCATG+TGG + chr4_1:7640544-7640563 Msa0533010:CDS 50.0%
TCCACATGCCACAAGAACCT+TGG - chr4_1:7640548-7640567 None:intergenic 50.0%
GTTCTTGTGGCATGTGGAGA+AGG + chr4_1:7640550-7640569 Msa0533010:CDS 50.0%
CTCCTATCCAGTAACCTCAG+GGG - chr4_1:7640800-7640819 None:intergenic 50.0%
!! AGGTGACGGAGTGATAAGGA+AGG - chr4_1:7640889-7640908 None:intergenic 50.0%
CGACCATATGTTTGTCCGAG+TGG + chr4_1:7641135-7641154 Msa0533010:intron 50.0%
TACCCAAGTCCCATTCCACT+CGG - chr4_1:7641153-7641172 None:intergenic 50.0%
CTCTGCTACCGAACTGAACA+AGG - chr4_1:7642936-7642955 None:intergenic 50.0%
GTAGCAGAGAATGGCTACGA+TGG + chr4_1:7642947-7642966 Msa0533010:intron 50.0%
GAAGGCAAAGGTTCGACCTA+AGG + chr4_1:7643092-7643111 Msa0533010:intron 50.0%
GAGGTTAGACCAATGGCCTA+TGG + chr4_1:7643278-7643297 Msa0533010:CDS 50.0%
GCTGTTGAACCATAGGCCAT+TGG - chr4_1:7643290-7643309 None:intergenic 50.0%
TGTCGCAGCTGTTGAACCAT+AGG - chr4_1:7643297-7643316 None:intergenic 50.0%
GTCCCCTGAGGTTACTGGAT+AGG + chr4_1:7640795-7640814 Msa0533010:intron 55.0%
!! GCTGAGGTGACGGAGTGATA+AGG - chr4_1:7640893-7640912 None:intergenic 55.0%
TGACTCTGTGGCTGAGGTGA+CGG - chr4_1:7640903-7640922 None:intergenic 55.0%
GGGATATGACTCTGTGGCTG+AGG - chr4_1:7640909-7640928 None:intergenic 55.0%
! AAATCGTTGTCATGGCGGGG+CGG - chr4_1:7640957-7640976 None:intergenic 55.0%
TGTCCGAGTGGAATGGGACT+TGG + chr4_1:7641147-7641166 Msa0533010:intron 55.0%
GTCCGAGTGGAATGGGACTT+GGG + chr4_1:7641148-7641167 Msa0533010:intron 55.0%
CCATTCGCACGCAAGCCACT+TGG - chr4_1:7642766-7642785 None:intergenic 60.0%
! CCAAGTGGCTTGCGTGCGAA+TGG + chr4_1:7642763-7642782 Msa0533010:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 7640035 7643322 7640035 ID=Msa0533010;Name=Msa0533010
chr4_1 mRNA 7640035 7643322 7640035 ID=Msa0533010-mRNA-1;Parent=Msa0533010;Name=Msa0533010-mRNA-1;_AED=0.29;_eAED=0.29;_QI=65|0.5|0.33|0.66|1|1|3|0|219
chr4_1 exon 7640035 7640578 7640035 ID=Msa0533010-mRNA-1:exon:2621;Parent=Msa0533010-mRNA-1
chr4_1 exon 7641782 7641904 7641782 ID=Msa0533010-mRNA-1:exon:2622;Parent=Msa0533010-mRNA-1
chr4_1 exon 7643265 7643322 7643265 ID=Msa0533010-mRNA-1:exon:2623;Parent=Msa0533010-mRNA-1
chr4_1 five_prime_UTR 7640035 7640099 7640035 ID=Msa0533010-mRNA-1:five_prime_utr;Parent=Msa0533010-mRNA-1
chr4_1 CDS 7640100 7640578 7640100 ID=Msa0533010-mRNA-1:cds;Parent=Msa0533010-mRNA-1
chr4_1 CDS 7641782 7641904 7641782 ID=Msa0533010-mRNA-1:cds;Parent=Msa0533010-mRNA-1
chr4_1 CDS 7643265 7643322 7643265 ID=Msa0533010-mRNA-1:cds;Parent=Msa0533010-mRNA-1
Gene Sequence

>Msa0533010

ATGGCAACTCATTTGAAGTACAATCTATTCAACACTTCAATACTTCAAAAACACAAAACACAAAAACAAAACAACTCTTTCACTACAGTCACACAAAAATCATCAAGATTTCATGTTATCAATGCAACATCCAATAATATGAGTGCTAGACAACTCATAGAATCTGGTACAATAAGAACAATTTTGCCAAAAGATGCTTCAACAGTTATGAACTCAGAAGGTTTCATTCTTCTTGATGTTAGACCCAATTGGGAAAGAGAGAAGGCACATGTGAAAGGTTCTTTGCATGTGCCAATGTTTGTGGAAGATAAGGATAATGGTCCTTTAACTTTGCTTAAGAAATGGGTTCATTTTGGTTATATTGGTGCTTGGACTGGTCAATATCTTACTACTTTTAACTCTGAGTTTCTTAGTCAAGTGGAAAATGTTGTTCCTGGTAAAGATACCAAGGTTCTTGTGGCATGTGGAGAAGGATTAAGGTCAATGACAGCAACTTCAAAGCTGTATAATGGAGGTTACAGAAATCTTGCATGGTTAGTTGGAGGCTTTAGTCGTTCAAAAGACGATGATTTCTCAGAAGTTGAAGGAAAAGAGAAGTTGAAAACAAATTTGGAGGAGGTTAGACCAATGGCCTATGGTTCAACAGCTGCGACAACATAA

Protein sequence

>Msa0533010

MATHLKYNLFNTSILQKHKTQKQNNSFTTVTQKSSRFHVINATSNNMSARQLIESGTIRTILPKDASTVMNSEGFILLDVRPNWEREKAHVKGSLHVPMFVEDKDNGPLTLLKKWVHFGYIGAWTGQYLTTFNSEFLSQVENVVPGKDTKVLVACGEGLRSMTATSKLYNGGYRNLAWLVGGFSRSKDDDFSEVEGKEKLKTNLEEVRPMAYGSTAATT*