AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1044450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044450 MtrunA17_Chr4g0002121 96.127 284 10 1 14 297 17 299 0.0 535
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1044450 AT1G16080.1 72.542 295 81 0 3 297 19 313 4.02e-155 436

Find 107 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAGTAATTAGTTACTTAC+AGG 0.250201 7_2:-2789368 Msa1044450:three_prime_UTR
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 7_2:-2791605 Msa1044450:CDS
TTTCTAGTACAAACCAAAAT+AGG 0.303632 7_2:+2792354 None:intergenic
GACTCTGAATCTGAAATTCT+TGG 0.306101 7_2:+2792530 None:intergenic
TTGAAGCAATATGATGTAAA+TGG 0.309823 7_2:+2789311 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 7_2:+2789481 None:intergenic
TGGAAAAGCTTTAGAAGGTA+TGG 0.356993 7_2:-2792436 Msa1044450:CDS
CTGATGCTAGTTCTGCTATC+AGG 0.381223 7_2:+2790084 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 7_2:-2790859 Msa1044450:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 7_2:+2791622 None:intergenic
AGAGTTGGAAAAGCTTTAGA+AGG 0.394622 7_2:-2792441 Msa1044450:CDS
GAAGGATTGACAGCTGCTTA+TGG 0.394793 7_2:-2791619 Msa1044450:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 7_2:-2790818 Msa1044450:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 7_2:-2789985 Msa1044450:CDS
TTTCTTGCAGCAAGTATATG+AGG 0.403444 7_2:+2789142 None:intergenic
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 7_2:-2790824 Msa1044450:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 7_2:+2791649 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 7_2:-2790066 Msa1044450:CDS
AAGTCTACACATATAGCTAA+TGG 0.412739 7_2:+2789407 None:intergenic
TATCAGTCTTACCATCAATA+GGG 0.414325 7_2:+2791650 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 7_2:-2790065 Msa1044450:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 7_2:-2791718 Msa1044450:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 7_2:-2791661 Msa1044450:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 7_2:-2789577 Msa1044450:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 7_2:+2791746 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 7_2:+2789513 None:intergenic
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 7_2:-2791717 Msa1044450:CDS
CCGGCCGTCATTGTCGGCGG+TGG 0.458905 7_2:-2792465 Msa1044450:CDS
GTTGCTCCGGCCGTCATTGT+CGG 0.460579 7_2:-2792471 Msa1044450:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 7_2:-2790843 Msa1044450:CDS
ACTCTGAATCTGAAATTCTT+GGG 0.469018 7_2:+2792531 None:intergenic
AGATGTTAGAGAAGCTCATA+TGG 0.474520 7_2:-2790882 Msa1044450:CDS
GGAAAAGCTTTAGAAGGTAT+GGG 0.482710 7_2:-2792435 Msa1044450:CDS
ATACCTTTCCATCTCGAAAG+AGG 0.483301 7_2:+2792300 None:intergenic
ATAGGACCTTCAAAATCAAC+GGG 0.484016 7_2:+2792372 None:intergenic
TATTTCGCAGTGTCAAAACT+TGG 0.486806 7_2:-2791679 Msa1044450:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 7_2:-2790832 Msa1044450:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 7_2:+2789514 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 7_2:-2789522 Msa1044450:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 7_2:-2789565 Msa1044450:CDS
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 7_2:-2790842 Msa1044450:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 7_2:-2790844 Msa1044450:CDS
ATTGTCGGCGGTGGAAGAGT+TGG 0.520026 7_2:-2792456 Msa1044450:CDS
ACCTATAAAACAAGTGTGTG+TGG 0.521466 7_2:-2789203 Msa1044450:three_prime_UTR
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 7_2:-2790847 Msa1044450:CDS
GACGGCCGGAGCAACTTTAG+TGG 0.529509 7_2:+2792479 None:intergenic
CTTTACCTCCTTAACTGCCG+TGG 0.529569 7_2:+2789977 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 7_2:+2790015 None:intergenic
CACCACCACTAAAGTTGCTC+CGG 0.536001 7_2:-2792484 Msa1044450:CDS
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 7_2:+2791627 None:intergenic
CAATATGATGTAAATGGACA+TGG 0.539245 7_2:+2789317 None:intergenic
AAACCACTCCTCTTTCGAGA+TGG 0.539592 7_2:-2792308 Msa1044450:CDS
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 7_2:-2791580 Msa1044450:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 7_2:+2791692 None:intergenic
CCTATAAAACAAGTGTGTGT+GGG 0.542045 7_2:-2789202 Msa1044450:three_prime_UTR
CATGTCCTATGCATACCAAA+TGG 0.544512 7_2:-2789496 Msa1044450:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 7_2:+2789998 None:intergenic
CTATAAAACAAGTGTGTGTG+GGG 0.547304 7_2:-2789201 Msa1044450:three_prime_UTR
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 7_2:+2789997 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 7_2:-2791730 Msa1044450:CDS
AATAGGACCTTCAAAATCAA+CGG 0.556089 7_2:+2792371 None:intergenic
TTAAGCCATTTGGTATGCAT+AGG 0.559098 7_2:+2789491 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 7_2:+2790025 None:intergenic
TTCTTGCAGCAAGTATATGA+GGG 0.564452 7_2:+2789143 None:intergenic
AAGGTATAAGGATTAGCCAT+GGG 0.564526 7_2:+2789104 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 7_2:-2790042 Msa1044450:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 7_2:+2791554 None:intergenic
GCTTTAGAAGGTATGGGAGA+TGG 0.570273 7_2:-2792429 Msa1044450:CDS
TCTTCCACCGCCGACAATGA+CGG 0.573890 7_2:+2792461 None:intergenic
TTTACCTCCTTAACTGCCGT+GGG 0.574195 7_2:+2789978 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 7_2:-2791563 Msa1044450:intron
ATTCAGAGTCTCTTCCGCCA+TGG 0.580472 7_2:-2792517 Msa1044450:CDS
GAAAGATGGGAACCAAGTGT+TGG 0.583229 7_2:-2791704 Msa1044450:CDS
CGCTGTTGCTGTAAGAGTGG+AGG 0.583827 7_2:+2792557 None:intergenic
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 7_2:-2789982 Msa1044450:intron
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 7_2:-2789530 Msa1044450:CDS
GGTGGTGACGGTAGAAGCCA+TGG 0.587494 7_2:+2792500 None:intergenic
TTGAACTCTCATGTGTCACT+AGG 0.596365 7_2:-2789440 Msa1044450:three_prime_UTR
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 7_2:-2789569 Msa1044450:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 7_2:+2791651 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 7_2:-2791577 Msa1044450:CDS
CCACCGCCGACAATGACGGC+CGG 0.601720 7_2:+2792465 None:intergenic
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 7_2:-2789994 Msa1044450:CDS
CAGCAATAGCAATGATGATG+AGG 0.606129 7_2:+2792627 None:intergenic
CATGTTTGCAGTTCAAATGG+AGG 0.608904 7_2:-2789574 Msa1044450:intron
ACTCCTCTTTCGAGATGGAA+AGG 0.612983 7_2:-2792303 Msa1044450:intron
AGCAACTTTAGTGGTGGTGA+CGG 0.613469 7_2:+2792488 None:intergenic
TGACAGCTGCTTATGGCAAG+TGG 0.617113 7_2:-2791612 Msa1044450:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 7_2:-2791637 Msa1044450:CDS
GGCCGGAGCAACTTTAGTGG+TGG 0.623121 7_2:+2792482 None:intergenic
GAAGGTATAAGGATTAGCCA+TGG 0.627990 7_2:+2789103 None:intergenic
TTTCCATCTCGAAAGAGGAG+TGG 0.628188 7_2:+2792305 None:intergenic
CTGAGAAAGAAAAGAACGAG+TGG 0.629515 7_2:-2792731 Msa1044450:five_prime_UTR
CATTTGGTATGCATAGGACA+TGG 0.629892 7_2:+2789497 None:intergenic
AACAAGTAGTAGTACTACAA+AGG 0.631659 7_2:+2789287 None:intergenic
TGGACATGGTTATCTACATG+TGG 0.633706 7_2:+2789331 None:intergenic
GCTCCGGCCGTCATTGTCGG+CGG 0.635181 7_2:-2792468 Msa1044450:CDS
AAAGCTTACTTACTTCAAGG+TGG 0.643257 7_2:+2790791 None:intergenic
AAGCGCTGTTGCTGTAAGAG+TGG 0.643492 7_2:+2792554 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 7_2:-2791744 Msa1044450:CDS
AAACCTTTACTCTCAAGCCA+CGG 0.646640 7_2:+2791727 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 7_2:-2790064 Msa1044450:CDS
AGGTATAAGGATTAGCCATG+GGG 0.695942 7_2:+2789105 None:intergenic
AAAGATCTTGTTGTGAAACG+TGG 0.716380 7_2:-2792405 Msa1044450:CDS
GGTATAAGGATTAGCCATGG+GGG 0.734429 7_2:+2789106 None:intergenic
GGTGACGGTAGAAGCCATGG+CGG 0.761423 7_2:+2792503 None:intergenic
TATAAAACAAGTGTGTGTGG+GGG 0.770887 7_2:-2789200 Msa1044450:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAAAACTTATTTTAC+GGG - chr7_2:2790485-2790504 Msa1044450:intron 10.0%
!! CCATTTAAAAATTAAAAATA+TGG + chr7_2:2791556-2791575 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG - chr7_2:2791553-2791572 Msa1044450:intron 10.0%
!!! ATTTTTAATGACATAAAAAG+AGG - chr7_2:2790086-2790105 Msa1044450:CDS 15.0%
!!! TTTTTAATGACATAAAAAGA+GGG - chr7_2:2790087-2790106 Msa1044450:CDS 15.0%
!! GTTTATAATGAATTATTAAG+CGG - chr7_2:2791354-2791373 Msa1044450:intron 15.0%
!!! GAACATATTTAATTTTAACT+TGG + chr7_2:2791645-2791664 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG + chr7_2:2792301-2792320 None:intergenic 15.0%
!! AATTATGAATGTATTCTAAT+TGG + chr7_2:2792302-2792321 None:intergenic 15.0%
!!! ACTGTACTTTATTTTGTTAT+GGG + chr7_2:2789187-2789206 None:intergenic 20.0%
!!! TACTGTACTTTATTTTGTTA+TGG + chr7_2:2789188-2789207 None:intergenic 20.0%
!!! TAGAAGAAAATTAATGGATA+TGG + chr7_2:2790792-2790811 None:intergenic 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG - chr7_2:2791529-2791548 Msa1044450:intron 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG - chr7_2:2791530-2791549 Msa1044450:intron 20.0%
!! ATAACATGAGAATAAATTAG+AGG - chr7_2:2792075-2792094 Msa1044450:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG - chr7_2:2792366-2792385 Msa1044450:CDS 20.0%
!!! CTGTACTTTATTTTGTTATG+GGG + chr7_2:2789186-2789205 None:intergenic 25.0%
!! TTTCTAGTACAAACCAAAAT+AGG + chr7_2:2789613-2789632 None:intergenic 25.0%
! CTAAAGATTGTGATACTTAT+GGG + chr7_2:2789768-2789787 None:intergenic 25.0%
! TTAAGAAGTTTACCCAAAAA+AGG + chr7_2:2789792-2789811 None:intergenic 25.0%
! GTTTGATATTTGTACAATAC+CGG - chr7_2:2789940-2789959 Msa1044450:intron 25.0%
!!! GATTTTTGAGGAACTAATTA+TGG - chr7_2:2790109-2790128 Msa1044450:intron 25.0%
!!! TAAAAACTTATTTTACGGGA+CGG - chr7_2:2790489-2790508 Msa1044450:intron 25.0%
! ATCTTTAGATGAAAATCAGA+AGG - chr7_2:2790636-2790655 Msa1044450:intron 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG + chr7_2:2790685-2790704 None:intergenic 25.0%
! CGAAGATAGAAGAAAATTAA+TGG + chr7_2:2790798-2790817 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG + chr7_2:2790831-2790850 None:intergenic 25.0%
! AAGTTTATGAATTTCAAGCA+CGG - chr7_2:2790873-2790892 Msa1044450:CDS 25.0%
!! GCATATTAACTTTGAGAAAA+TGG + chr7_2:2791206-2791225 None:intergenic 25.0%
! ATTTGTATATATAGAGAGAG+TGG + chr7_2:2791420-2791439 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG - chr7_2:2791671-2791690 Msa1044450:CDS 25.0%
! TTATTCTCATGTTATCAGTA+TGG + chr7_2:2792070-2792089 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG + chr7_2:2792252-2792271 None:intergenic 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG + chr7_2:2792257-2792276 None:intergenic 25.0%
! AAGAGTAATTAGTTACTTAC+AGG - chr7_2:2792596-2792615 Msa1044450:exon 25.0%
! TTGAAGCAATATGATGTAAA+TGG + chr7_2:2792656-2792675 None:intergenic 25.0%
!!! ACTTTATTTTGTTATGGGGA+AGG + chr7_2:2789182-2789201 None:intergenic 30.0%
! ACTCTGAATCTGAAATTCTT+GGG + chr7_2:2789436-2789455 None:intergenic 30.0%
AATAGGACCTTCAAAATCAA+CGG + chr7_2:2789596-2789615 None:intergenic 30.0%
!! TGATTTTGAAGGTCCTATTT+TGG - chr7_2:2789597-2789616 Msa1044450:intron 30.0%
CCTAAAGAATGTGAAACTTA+TGG + chr7_2:2789708-2789727 None:intergenic 30.0%
CCATAAGTTTCACATTCTTT+AGG - chr7_2:2789705-2789724 Msa1044450:intron 30.0%
CCTAAAGATTGTGATACTTA+TGG + chr7_2:2789769-2789788 None:intergenic 30.0%
CCATAAGTATCACAATCTTT+AGG - chr7_2:2789766-2789785 Msa1044450:intron 30.0%
!!! ACAATCTTTAGGCCTTTTTT+GGG - chr7_2:2789777-2789796 Msa1044450:intron 30.0%
TATGCGTTGAAAGTTCTATA+TGG - chr7_2:2789902-2789921 Msa1044450:intron 30.0%
! CATAAAAAGAGGGATTTTTG+AGG - chr7_2:2790097-2790116 Msa1044450:intron 30.0%
AATGAGTTGTTACTATCGTT+TGG - chr7_2:2790174-2790193 Msa1044450:intron 30.0%
AGAGTAAAGGTTTGAAAGAT+GGG - chr7_2:2790247-2790266 Msa1044450:intron 30.0%
TATCAGTCTTACCATCAATA+GGG + chr7_2:2790317-2790336 None:intergenic 30.0%
GTAACCAAAACAAGAAAACT+TGG + chr7_2:2790464-2790483 None:intergenic 30.0%
!! CTCACGTGTTATTGTATTTT+TGG - chr7_2:2790552-2790571 Msa1044450:intron 30.0%
! GGATTGCTTAACAATTTTTC+TGG - chr7_2:2790573-2790592 Msa1044450:intron 30.0%
AAATCTTAGTAAGTCCGATT+TGG - chr7_2:2790668-2790687 Msa1044450:intron 30.0%
GTCATTCTATCTTCATTCAA+CGG - chr7_2:2790711-2790730 Msa1044450:intron 30.0%
! TTTTCTTCTATCTTCGATGT+TGG - chr7_2:2790802-2790821 Msa1044450:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG - chr7_2:2790894-2790913 Msa1044450:CDS 30.0%
GAAAATTCCTAAGATTAGAG+GGG - chr7_2:2790895-2790914 Msa1044450:CDS 30.0%
AATTAAACCCCTCTAATCTT+AGG + chr7_2:2790905-2790924 None:intergenic 30.0%
! AACTTTGAGAAAATGGCAAT+AGG + chr7_2:2791199-2791218 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG - chr7_2:2791232-2791251 Msa1044450:intron 30.0%
! AATTGTGTCGTTAAGATAGT+TGG - chr7_2:2791294-2791313 Msa1044450:intron 30.0%
AAATTGATTACCTATGTGTC+TGG - chr7_2:2791740-2791759 Msa1044450:CDS 30.0%
AATTGATTACCTATGTGTCT+GGG - chr7_2:2791741-2791760 Msa1044450:CDS 30.0%
TCAATTTCATAGTTGCAACA+TGG + chr7_2:2791801-2791820 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG + chr7_2:2792207-2792226 None:intergenic 30.0%
GTCTTATATTTCACAGATGA+TGG - chr7_2:2792207-2792226 Msa1044450:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG + chr7_2:2792269-2792288 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG + chr7_2:2792486-2792505 None:intergenic 30.0%
AAGTCTACACATATAGCTAA+TGG + chr7_2:2792560-2792579 None:intergenic 30.0%
CAATATGATGTAAATGGACA+TGG + chr7_2:2792650-2792669 None:intergenic 30.0%
AACAAGTAGTAGTACTACAA+AGG + chr7_2:2792680-2792699 None:intergenic 30.0%
AAAAATGAAAACGTGGAGGA+AGG - chr7_2:2789117-2789136 Msa1044450:three_prime_UTR 35.0%
! GACTCTGAATCTGAAATTCT+TGG + chr7_2:2789437-2789456 None:intergenic 35.0%
!! AGAGTTGGAAAAGCTTTAGA+AGG - chr7_2:2789523-2789542 Msa1044450:CDS 35.0%
!! TGGAAAAGCTTTAGAAGGTA+TGG - chr7_2:2789528-2789547 Msa1044450:CDS 35.0%
!! GGAAAAGCTTTAGAAGGTAT+GGG - chr7_2:2789529-2789548 Msa1044450:CDS 35.0%
! AAAGATCTTGTTGTGAAACG+TGG - chr7_2:2789559-2789578 Msa1044450:CDS 35.0%
!!! TCAATTCCCGTTGATTTTGA+AGG - chr7_2:2789586-2789605 Msa1044450:intron 35.0%
ATAGGACCTTCAAAATCAAC+GGG + chr7_2:2789595-2789614 None:intergenic 35.0%
! TCACATTCTTTAGGCTTGTT+TGG - chr7_2:2789714-2789733 Msa1044450:intron 35.0%
TGTGATACTTATGGGACTAA+TGG + chr7_2:2789760-2789779 None:intergenic 35.0%
!!! CACAATCTTTAGGCCTTTTT+TGG - chr7_2:2789776-2789795 Msa1044450:intron 35.0%
! TTTTATACAACCACATGTGC+CGG + chr7_2:2789962-2789981 None:intergenic 35.0%
!! GTTGATGTTTCTGTCTTTTC+TGG - chr7_2:2790012-2790031 Msa1044450:CDS 35.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG - chr7_2:2790204-2790223 Msa1044450:intron 35.0%
! GTTTTTCCAGAATGGAATGT+TGG - chr7_2:2790212-2790231 Msa1044450:intron 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG - chr7_2:2790246-2790265 Msa1044450:intron 35.0%
TATTTCGCAGTGTCAAAACT+TGG - chr7_2:2790285-2790304 Msa1044450:intron 35.0%
ATCAGTCTTACCATCAATAG+GGG + chr7_2:2790316-2790335 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG + chr7_2:2790318-2790337 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG - chr7_2:2790384-2790403 Msa1044450:intron 35.0%
AAACAAGAAAACTTGGCTAC+TGG + chr7_2:2790457-2790476 None:intergenic 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG - chr7_2:2790457-2790476 Msa1044450:intron 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG - chr7_2:2790510-2790529 Msa1044450:intron 35.0%
TCTCCCAAAAAGAAAACAAC+AGG + chr7_2:2790516-2790535 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG + chr7_2:2790618-2790637 None:intergenic 35.0%
GGTTTCGATATATACAGTGA+TGG - chr7_2:2790732-2790751 Msa1044450:intron 35.0%
CGGAAAATTCCTAAGATTAG+AGG - chr7_2:2790893-2790912 Msa1044450:CDS 35.0%
AGATGTTAGAGAAGCTCATA+TGG - chr7_2:2791082-2791101 Msa1044450:intron 35.0%
ATTTGTTCTGTCATGCTTGT+TGG - chr7_2:2791105-2791124 Msa1044450:intron 35.0%
AAAGCTTACTTACTTCAAGG+TGG + chr7_2:2791176-2791195 None:intergenic 35.0%
AGGAAAGCTTACTTACTTCA+AGG + chr7_2:2791179-2791198 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG - chr7_2:2791442-2791461 Msa1044450:intron 35.0%
ATCAATTCCTGTGTGCAAAT+AGG - chr7_2:2791593-2791612 Msa1044450:CDS 35.0%
AGATATTATCCCAGACACAT+AGG + chr7_2:2791753-2791772 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG - chr7_2:2791922-2791941 Msa1044450:intron 35.0%
AGAGAATTTCGTTCTTTGTC+TGG - chr7_2:2792164-2792183 Msa1044450:intron 35.0%
!! GTTTTATGCTCTTTCTGAGA+AGG - chr7_2:2792421-2792440 Msa1044450:CDS 35.0%
TTAAGCCATTTGGTATGCAT+AGG + chr7_2:2792476-2792495 None:intergenic 35.0%
ACCTATAAAACAAGTGTGTG+TGG - chr7_2:2792761-2792780 Msa1044450:five_prime_UTR 35.0%
CCTATAAAACAAGTGTGTGT+GGG - chr7_2:2792762-2792781 Msa1044450:five_prime_UTR 35.0%
CTATAAAACAAGTGTGTGTG+GGG - chr7_2:2792763-2792782 Msa1044450:five_prime_UTR 35.0%
TATAAAACAAGTGTGTGTGG+GGG - chr7_2:2792764-2792783 Msa1044450:five_prime_UTR 35.0%
TTCTTGCAGCAAGTATATGA+GGG + chr7_2:2792824-2792843 None:intergenic 35.0%
TTTCTTGCAGCAAGTATATG+AGG + chr7_2:2792825-2792844 None:intergenic 35.0%
! AATTTTACTTCATACCCCCA+TGG - chr7_2:2792844-2792863 Msa1044450:five_prime_UTR 35.0%
CTGAGAAAGAAAAGAACGAG+TGG - chr7_2:2789233-2789252 Msa1044450:three_prime_UTR 40.0%
! CAGCAATAGCAATGATGATG+AGG + chr7_2:2789340-2789359 None:intergenic 40.0%
ATACCTTTCCATCTCGAAAG+AGG + chr7_2:2789667-2789686 None:intergenic 40.0%
! GTTGTTACTATCGTTTGGTG+TGG - chr7_2:2790179-2790198 Msa1044450:intron 40.0%
AAACCTTTACTCTCAAGCCA+CGG + chr7_2:2790240-2790259 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG - chr7_2:2790327-2790346 Msa1044450:intron 40.0%
TCTGAAAGATTGAAAGCTGG+AGG - chr7_2:2790387-2790406 Msa1044450:intron 40.0%
TGAATACTACCTTGCAAGAG+AGG + chr7_2:2790413-2790432 None:intergenic 40.0%
!!! CGGACCTGTTGTTTTCTTTT+TGG - chr7_2:2790509-2790528 Msa1044450:intron 40.0%
ATGCTTCCTTATCCAAAACC+TGG + chr7_2:2791053-2791072 None:intergenic 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG - chr7_2:2791146-2791165 Msa1044450:intron 40.0%
GGATATTGCAATCAGTGAGT+TGG - chr7_2:2791315-2791334 Msa1044450:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG - chr7_2:2791321-2791340 Msa1044450:intron 40.0%
! GCAATCAGTGAGTTGGATTA+GGG - chr7_2:2791322-2791341 Msa1044450:intron 40.0%
AGTGGCAATACATTGACAGT+AGG + chr7_2:2791402-2791421 None:intergenic 40.0%
TTGCACACAGGAATTGATGT+AGG + chr7_2:2791591-2791610 None:intergenic 40.0%
CCTAGATCATCATACGACTA+TGG + chr7_2:2792111-2792130 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG - chr7_2:2792108-2792127 Msa1044450:intron 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG - chr7_2:2792169-2792188 Msa1044450:intron 40.0%
GGTCATGTTTGCAGTTCAAA+TGG - chr7_2:2792387-2792406 Msa1044450:CDS 40.0%
CATGTTTGCAGTTCAAATGG+AGG - chr7_2:2792390-2792409 Msa1044450:CDS 40.0%
TTGCAGTTCAAATGGAGGAA+TGG - chr7_2:2792395-2792414 Msa1044450:CDS 40.0%
AGTTCAAATGGAGGAATGGT+TGG - chr7_2:2792399-2792418 Msa1044450:CDS 40.0%
CATTTGGTATGCATAGGACA+TGG + chr7_2:2792470-2792489 None:intergenic 40.0%
CATGTCCTATGCATACCAAA+TGG - chr7_2:2792468-2792487 Msa1044450:CDS 40.0%
! TTGAACTCTCATGTGTCACT+AGG - chr7_2:2792524-2792543 Msa1044450:CDS 40.0%
TGGACATGGTTATCTACATG+TGG + chr7_2:2792636-2792655 None:intergenic 40.0%
!!! CCCACACACACTTGTTTTAT+AGG + chr7_2:2792765-2792784 None:intergenic 40.0%
! TTGGGAGATGCTATCTTTTG+TGG - chr7_2:2792797-2792816 Msa1044450:five_prime_UTR 40.0%
! AGCAACTTTAGTGGTGGTGA+CGG + chr7_2:2789479-2789498 None:intergenic 45.0%
!! GCTTTAGAAGGTATGGGAGA+TGG - chr7_2:2789535-2789554 Msa1044450:CDS 45.0%
AAACCACTCCTCTTTCGAGA+TGG - chr7_2:2789656-2789675 Msa1044450:intron 45.0%
TTTCCATCTCGAAAGAGGAG+TGG + chr7_2:2789662-2789681 None:intergenic 45.0%
ACTCCTCTTTCGAGATGGAA+AGG - chr7_2:2789661-2789680 Msa1044450:intron 45.0%
TTGTACAATACCGGCACATG+TGG - chr7_2:2789949-2789968 Msa1044450:intron 45.0%
!! ATCGTTTGGTGTGGCAGATT+TGG - chr7_2:2790188-2790207 Msa1044450:intron 45.0%
ACGGTTCCAACATTCCATTC+TGG + chr7_2:2790221-2790240 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG - chr7_2:2790220-2790239 Msa1044450:intron 45.0%
GAAAGATGGGAACCAAGTGT+TGG - chr7_2:2790260-2790279 Msa1044450:intron 45.0%
CTGCGAAATATGCCAACACT+TGG + chr7_2:2790275-2790294 None:intergenic 45.0%
AGCTGTCAATCCTTCAGGAT+TGG + chr7_2:2790340-2790359 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG + chr7_2:2790345-2790364 None:intergenic 45.0%
GAAGGATTGACAGCTGCTTA+TGG - chr7_2:2790345-2790364 Msa1044450:intron 45.0%
TGCTTATGGCAAGTGGTCTT+TGG - chr7_2:2790359-2790378 Msa1044450:intron 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG - chr7_2:2791044-2791063 Msa1044450:intron 45.0%
TCCTGTGTGCAAATAGGTTG+TGG - chr7_2:2791599-2791618 Msa1044450:CDS 45.0%
CCTGTGTGCAAATAGGTTGT+GGG - chr7_2:2791600-2791619 Msa1044450:CDS 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG + chr7_2:2791883-2791902 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG - chr7_2:2791898-2791917 Msa1044450:intron 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG - chr7_2:2791899-2791918 Msa1044450:intron 45.0%
TTTACCTCCTTAACTGCCGT+GGG + chr7_2:2791989-2792008 None:intergenic 45.0%
GATCATCATACGACTATGGC+AGG + chr7_2:2792107-2792126 None:intergenic 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG + chr7_2:2792241-2792260 None:intergenic 45.0%
!!! TAATTTTTATTATTTATTGT+TGG - chr7_2:2790141-2790160 Msa1044450:intron 5.0%
!!! ATTAATAAAAACTTATTTTA+CGG - chr7_2:2790484-2790503 Msa1044450:intron 5.0%
! AAGCGCTGTTGCTGTAAGAG+TGG + chr7_2:2789413-2789432 None:intergenic 50.0%
ATTCAGAGTCTCTTCCGCCA+TGG - chr7_2:2789447-2789466 Msa1044450:three_prime_UTR 50.0%
CACCACCACTAAAGTTGCTC+CGG - chr7_2:2789480-2789499 Msa1044450:CDS 50.0%
GAACCGTGGCTTGAGAGTAA+AGG - chr7_2:2790234-2790253 Msa1044450:intron 50.0%
CTTGGAGAGTCCCCTATTGA+TGG - chr7_2:2790303-2790322 Msa1044450:intron 50.0%
TGACAGCTGCTTATGGCAAG+TGG - chr7_2:2790352-2790371 Msa1044450:intron 50.0%
CAAAACCTGGCGTTCAAGAC+GGG + chr7_2:2791040-2791059 None:intergenic 50.0%
CCAAAACCTGGCGTTCAAGA+CGG + chr7_2:2791041-2791060 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG - chr7_2:2791140-2791159 Msa1044450:intron 50.0%
CCCACAACCTATTTGCACAC+AGG + chr7_2:2791603-2791622 None:intergenic 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG - chr7_2:2791613-2791632 Msa1044450:CDS 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG - chr7_2:2791614-2791633 Msa1044450:CDS 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG - chr7_2:2791900-2791919 Msa1044450:intron 50.0%
TGGGAAAGTGAGCAACAGCT+CGG + chr7_2:2791970-2791989 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG - chr7_2:2791970-2791989 Msa1044450:intron 50.0%
TCACTTTCCCACGGCAGTTA+AGG - chr7_2:2791979-2791998 Msa1044450:intron 50.0%
CTTTACCTCCTTAACTGCCG+TGG + chr7_2:2791990-2792009 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG - chr7_2:2792173-2792192 Msa1044450:intron 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG - chr7_2:2792176-2792195 Msa1044450:intron 50.0%
TCTGAGAAGGCTATTGCCCA+AGG - chr7_2:2792434-2792453 Msa1044450:CDS 50.0%
ACATGGATCCTGCTTGCCTT+GGG + chr7_2:2792453-2792472 None:intergenic 50.0%
! TGTGGGGGCTGATATTGGTT+GGG - chr7_2:2792779-2792798 Msa1044450:five_prime_UTR 50.0%
CGCTGTTGCTGTAAGAGTGG+AGG + chr7_2:2789410-2789429 None:intergenic 55.0%
TCTTCCACCGCCGACAATGA+CGG + chr7_2:2789506-2789525 None:intergenic 55.0%
ATTGTCGGCGGTGGAAGAGT+TGG - chr7_2:2789508-2789527 Msa1044450:CDS 55.0%
! CCGTCTTGAACGCCAGGTTT+TGG - chr7_2:2791038-2791057 Msa1044450:intron 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG - chr7_2:2791117-2791136 Msa1044450:intron 55.0%
TTGTTGGAGCGCGTCATGGA+GGG - chr7_2:2791121-2791140 Msa1044450:intron 55.0%
CGTCATGGAGGGGTTTCTGT+TGG - chr7_2:2791132-2791151 Msa1044450:intron 55.0%
CGCACACAAACGGTCTTCCA+TGG + chr7_2:2791942-2791961 None:intergenic 55.0%
! CTCGGGAGTACGCACACAAA+CGG + chr7_2:2791952-2791971 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG + chr7_2:2791969-2791988 None:intergenic 55.0%
CTTTCCCACGGCAGTTAAGG+AGG - chr7_2:2791982-2792001 Msa1044450:intron 55.0%
GACATGGATCCTGCTTGCCT+TGG + chr7_2:2792454-2792473 None:intergenic 55.0%
GTGTGTGTGGGGGCTGATAT+TGG - chr7_2:2792774-2792793 Msa1044450:five_prime_UTR 55.0%
GTGTGGGGGCTGATATTGGT+TGG - chr7_2:2792778-2792797 Msa1044450:five_prime_UTR 55.0%
! GGTGACGGTAGAAGCCATGG+CGG + chr7_2:2789464-2789483 None:intergenic 60.0%
!! GGTGGTGACGGTAGAAGCCA+TGG + chr7_2:2789467-2789486 None:intergenic 60.0%
GGCCGGAGCAACTTTAGTGG+TGG + chr7_2:2789485-2789504 None:intergenic 60.0%
GACGGCCGGAGCAACTTTAG+TGG + chr7_2:2789488-2789507 None:intergenic 60.0%
GTTGCTCCGGCCGTCATTGT+CGG - chr7_2:2789493-2789512 Msa1044450:CDS 60.0%
AGCTGGAGGCCTCTCTTGCA+AGG - chr7_2:2790401-2790420 Msa1044450:intron 60.0%
TCTGACCCGTCTTGAACGCC+AGG - chr7_2:2791032-2791051 Msa1044450:intron 60.0%
CTTGTTGGAGCGCGTCATGG+AGG - chr7_2:2791120-2791139 Msa1044450:intron 60.0%
TGTTGGAGCGCGTCATGGAG+GGG - chr7_2:2791122-2791141 Msa1044450:intron 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG - chr7_2:2792181-2792200 Msa1044450:intron 60.0%
GGCTATTGCCCAAGGCAAGC+AGG - chr7_2:2792442-2792461 Msa1044450:CDS 60.0%
GCTCCGGCCGTCATTGTCGG+CGG - chr7_2:2789496-2789515 Msa1044450:CDS 70.0%
CCACCGCCGACAATGACGGC+CGG + chr7_2:2789502-2789521 None:intergenic 70.0%
CCGGCCGTCATTGTCGGCGG+TGG - chr7_2:2789499-2789518 Msa1044450:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2789117 2792869 2789117 ID=Msa1044450;Name=Msa1044450
chr7_2 mRNA 2789117 2792869 2789117 ID=Msa1044450-mRNA-1;Parent=Msa1044450;Name=Msa1044450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=265|1|1|1|1|1|5|355|297
chr7_2 exon 2789117 2789585 2789117 ID=Msa1044450-mRNA-1:exon:756;Parent=Msa1044450-mRNA-1
chr7_2 exon 2789983 2790114 2789983 ID=Msa1044450-mRNA-1:exon:755;Parent=Msa1044450-mRNA-1
chr7_2 exon 2790804 2790932 2790804 ID=Msa1044450-mRNA-1:exon:754;Parent=Msa1044450-mRNA-1
chr7_2 exon 2791564 2791781 2791564 ID=Msa1044450-mRNA-1:exon:753;Parent=Msa1044450-mRNA-1
chr7_2 exon 2792304 2792869 2792304 ID=Msa1044450-mRNA-1:exon:752;Parent=Msa1044450-mRNA-1
chr7_2 five_prime_UTR 2792605 2792869 2792605 ID=Msa1044450-mRNA-1:five_prime_utr;Parent=Msa1044450-mRNA-1
chr7_2 CDS 2792304 2792604 2792304 ID=Msa1044450-mRNA-1:cds;Parent=Msa1044450-mRNA-1
chr7_2 CDS 2791564 2791781 2791564 ID=Msa1044450-mRNA-1:cds;Parent=Msa1044450-mRNA-1
chr7_2 CDS 2790804 2790932 2790804 ID=Msa1044450-mRNA-1:cds;Parent=Msa1044450-mRNA-1
chr7_2 CDS 2789983 2790114 2789983 ID=Msa1044450-mRNA-1:cds;Parent=Msa1044450-mRNA-1
chr7_2 CDS 2789472 2789585 2789472 ID=Msa1044450-mRNA-1:cds;Parent=Msa1044450-mRNA-1
chr7_2 three_prime_UTR 2789117 2789471 2789117 ID=Msa1044450-mRNA-1:three_prime_utr;Parent=Msa1044450-mRNA-1
Gene Sequence

>Msa1044450

ATGTCTTTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCGGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGATTCTGTTCTTCAAACCACTCCTCTTTCGAGATGGAAAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAATTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGTTCAAATGGAGGAATGGTTGGTTTTATGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>Msa1044450

MSFSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWKDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYALSEKAIAQGKQDPCPMHTKWLKELKIV*