Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0312750 | XP_013462509.1 | 94.937 | 237 | 11 | 1 | 1 | 237 | 1 | 236 | 9.31e-156 | 442 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0312750 | sp|Q6R567|RMA1_CAPAN | 42.678 | 239 | 95 | 8 | 22 | 237 | 33 | 252 | 5.14e-51 | 169 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0024680 | Msa0312750 | -0.808155 | 3.557756e-50 | -8.615850e-47 |
Msa0029540 | Msa0312750 | 0.821257 | 4.446005e-53 | -8.615850e-47 |
Msa0030590 | Msa0312750 | -0.819194 | 1.319875e-52 | -8.615850e-47 |
Msa0051430 | Msa0312750 | 0.813016 | 3.168197e-51 | -8.615850e-47 |
Msa0128370 | Msa0312750 | -0.816304 | 5.924487e-52 | -8.615850e-47 |
Msa0138970 | Msa0312750 | 0.825500 | 4.532347e-54 | -8.615850e-47 |
Msa0172350 | Msa0312750 | -0.800886 | 1.167657e-48 | -8.615850e-47 |
Msa0192040 | Msa0312750 | 0.962507 | 5.840160e-121 | -8.615850e-47 |
Msa0196020 | Msa0312750 | 0.827531 | 1.485922e-54 | -8.615850e-47 |
Msa0260820 | Msa0312750 | 0.818411 | 1.987429e-52 | -8.615850e-47 |
Msa0267760 | Msa0312750 | -0.801154 | 1.029166e-48 | -8.615850e-47 |
Msa0272550 | Msa0312750 | 0.902449 | 9.588030e-79 | -8.615850e-47 |
Msa0275400 | Msa0312750 | 0.829564 | 4.797130e-55 | -8.615850e-47 |
Msa0312750 | Msa0423360 | 0.824995 | 5.967001e-54 | -8.615850e-47 |
Msa0312750 | Msa0469910 | 0.824022 | 1.010671e-53 | -8.615850e-47 |
Msa0312750 | Msa0583590 | -0.800095 | 1.692379e-48 | -8.615850e-47 |
Msa0312750 | Msa0754720 | 0.812788 | 3.554338e-51 | -8.615850e-47 |
Msa0312750 | Msa0784620 | -0.819655 | 1.036349e-52 | -8.615850e-47 |
Msa0312750 | Msa1040120 | -0.819514 | 1.116238e-52 | -8.615850e-47 |
Msa0312750 | Msa1337730 | -0.800151 | 1.648994e-48 | -8.615850e-47 |
Msa0312750 | Msa1360890 | 0.869166 | 3.794260e-66 | -8.615850e-47 |
Msa0312750 | Msa1442220 | 0.830311 | 3.154590e-55 | -8.615850e-47 |
Msa0312750 | Msa1442300 | -0.802369 | 5.798030e-49 | -8.615850e-47 |
Msa0312750 | Msa1459390 | -0.809703 | 1.659888e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0312750 | MtrunA17_Chr2g0282171 | 94.937 | 237 | 11 | 1 | 1 | 237 | 1 | 236 | 8.56e-160 | 442 |
Msa0312750 | MtrunA17_Chr4g0047381 | 55.172 | 232 | 80 | 8 | 1 | 223 | 1 | 217 | 1.98e-73 | 223 |
Msa0312750 | MtrunA17_Chr4g0047371 | 43.443 | 244 | 86 | 8 | 1 | 237 | 1 | 199 | 1.18e-53 | 171 |
Msa0312750 | MtrunA17_Chr4g0021321 | 40.851 | 235 | 113 | 7 | 12 | 237 | 27 | 244 | 7.16e-47 | 155 |
Msa0312750 | MtrunA17_Chr8g0360011 | 41.048 | 229 | 123 | 6 | 4 | 223 | 11 | 236 | 2.90e-45 | 151 |
Msa0312750 | MtrunA17_Chr2g0324261 | 40.367 | 218 | 106 | 5 | 19 | 225 | 31 | 235 | 3.14e-44 | 149 |
Msa0312750 | MtrunA17_Chr2g0324291 | 51.923 | 104 | 44 | 3 | 28 | 130 | 30 | 128 | 9.24e-29 | 106 |
Msa0312750 | MtrunA17_Chr2g0324281 | 56.322 | 87 | 25 | 2 | 28 | 114 | 18 | 91 | 2.37e-27 | 103 |
Msa0312750 | MtrunA17_Chr7g0258821 | 40.000 | 120 | 58 | 3 | 10 | 125 | 148 | 257 | 3.98e-24 | 99.8 |
Msa0312750 | MtrunA17_Chr1g0175871 | 44.330 | 97 | 52 | 2 | 23 | 117 | 50 | 146 | 4.03e-23 | 92.8 |
Msa0312750 | MtrunA17_Chr1g0154561 | 47.253 | 91 | 40 | 2 | 26 | 116 | 30 | 112 | 1.06e-22 | 92.4 |
Msa0312750 | MtrunA17_Chr1g0175571 | 45.055 | 91 | 43 | 2 | 26 | 116 | 120 | 203 | 5.51e-22 | 90.5 |
Msa0312750 | MtrunA17_Chr5g0403521 | 54.412 | 68 | 24 | 1 | 26 | 93 | 33 | 93 | 9.34e-22 | 90.1 |
Msa0312750 | MtrunA17_Chr1g0175641 | 53.125 | 64 | 24 | 1 | 28 | 91 | 76 | 133 | 4.03e-21 | 87.0 |
Msa0312750 | MtrunA17_Chr2g0308681 | 39.080 | 87 | 39 | 2 | 14 | 93 | 86 | 165 | 1.29e-15 | 73.6 |
Msa0312750 | MtrunA17_Chr1g0150921 | 36.000 | 75 | 38 | 1 | 16 | 90 | 352 | 416 | 3.58e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0312750 | AT4G03510.3 | 40.000 | 240 | 106 | 9 | 13 | 237 | 33 | 249 | 1.21e-44 | 150 |
Msa0312750 | AT4G03510.1 | 40.000 | 240 | 106 | 9 | 13 | 237 | 33 | 249 | 1.21e-44 | 150 |
Msa0312750 | AT4G03510.2 | 40.000 | 240 | 106 | 9 | 13 | 237 | 33 | 249 | 1.21e-44 | 150 |
Msa0312750 | AT4G03510.4 | 40.000 | 240 | 106 | 9 | 13 | 237 | 33 | 249 | 1.21e-44 | 150 |
Msa0312750 | AT4G27470.1 | 41.150 | 226 | 99 | 11 | 10 | 223 | 26 | 229 | 1.93e-39 | 137 |
Msa0312750 | AT4G28270.1 | 34.375 | 224 | 94 | 5 | 23 | 237 | 14 | 193 | 9.93e-37 | 128 |
Msa0312750 | AT1G74990.1 | 43.443 | 122 | 56 | 4 | 11 | 131 | 3 | 112 | 7.23e-26 | 98.6 |
Msa0312750 | AT3G58030.4 | 39.695 | 131 | 58 | 4 | 16 | 142 | 121 | 234 | 1.21e-24 | 101 |
Msa0312750 | AT3G58030.2 | 39.695 | 131 | 58 | 4 | 16 | 142 | 121 | 234 | 1.21e-24 | 101 |
Msa0312750 | AT3G58030.1 | 39.695 | 131 | 58 | 4 | 16 | 142 | 121 | 234 | 1.21e-24 | 101 |
Msa0312750 | AT3G58030.3 | 39.695 | 131 | 58 | 4 | 16 | 142 | 121 | 234 | 1.21e-24 | 101 |
Msa0312750 | AT2G42030.1 | 44.231 | 104 | 47 | 2 | 28 | 131 | 139 | 231 | 1.02e-23 | 98.6 |
Msa0312750 | AT1G19310.1 | 59.091 | 66 | 20 | 1 | 28 | 93 | 21 | 79 | 5.54e-23 | 93.6 |
Msa0312750 | AT2G23780.3 | 49.333 | 75 | 31 | 1 | 19 | 93 | 17 | 84 | 1.01e-21 | 90.1 |
Msa0312750 | AT2G23780.2 | 49.333 | 75 | 31 | 1 | 19 | 93 | 17 | 84 | 1.01e-21 | 90.1 |
Msa0312750 | AT2G23780.1 | 49.333 | 75 | 31 | 1 | 19 | 93 | 17 | 84 | 1.01e-21 | 90.1 |
Msa0312750 | AT2G44410.1 | 33.981 | 103 | 49 | 4 | 26 | 122 | 121 | 210 | 3.64e-14 | 71.6 |
Find 58 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTGCTTCTGACATGGAATT+TGG | 0.134595 | 2_4:+7906321 | None:intergenic |
TTCAGGTGCTCAAGCTCTTT+TGG | 0.228650 | 2_4:-7906016 | Msa0312750:CDS |
TCCGTATCGAAATCCTTATC+AGG | 0.353516 | 2_4:-7905959 | Msa0312750:CDS |
TTTAAATATTGTCCCTGATA+AGG | 0.360067 | 2_4:+7905946 | None:intergenic |
CCACCAAGACCAACTGCTTC+AGG | 0.366329 | 2_4:-7906033 | Msa0312750:CDS |
CCCACCATCTGATAAGAATT+CGG | 0.384732 | 2_4:+7905781 | None:intergenic |
ACCCTCTTGTTGTTGGTATG+AGG | 0.406828 | 2_4:+7905918 | None:intergenic |
TTTGTGGCCACCTTTACTGC+TGG | 0.418114 | 2_4:-7906233 | Msa0312750:CDS |
TAGCATCACCCTCTTGTTGT+TGG | 0.423010 | 2_4:+7905911 | None:intergenic |
GCACCTGAAGCAGTTGGTCT+TGG | 0.423857 | 2_4:+7906030 | None:intergenic |
GTTCAAAGTGATGATTCTCT+TGG | 0.429642 | 2_4:-7906186 | Msa0312750:CDS |
CTTAGACTTCGCCAACGAAC+CGG | 0.433237 | 2_4:-7906265 | Msa0312750:CDS |
ACCACAATGGTCCCATTGTA+TGG | 0.455188 | 2_4:-7906114 | Msa0312750:CDS |
CCTGAAGCAGTTGGTCTTGG+TGG | 0.457076 | 2_4:+7906033 | None:intergenic |
GGCCACCGCGGCCATACAAT+GGG | 0.462138 | 2_4:+7906103 | None:intergenic |
TCCTCGAACATTCCAACCAC+TGG | 0.475584 | 2_4:+7905835 | None:intergenic |
CGGCGGGTGGCCGACTACTC+CGG | 0.478519 | 2_4:+7905801 | None:intergenic |
TGGCCACCGCGGCCATACAA+TGG | 0.491039 | 2_4:+7906102 | None:intergenic |
TTCTGACATGGAATTTGGAA+TGG | 0.496636 | 2_4:+7906326 | None:intergenic |
GAACCGGTAGTCACCCTTTG+TGG | 0.499048 | 2_4:-7906249 | Msa0312750:CDS |
AGATGCAAGGCCAGCAGTAA+AGG | 0.499222 | 2_4:+7906223 | None:intergenic |
GTTGCAATCAAAACAACCAT+TGG | 0.524152 | 2_4:+7906293 | None:intergenic |
ACTTCACAAATGCTTAGTCT+TGG | 0.524773 | 2_4:-7905889 | Msa0312750:CDS |
CCCTGATAAGGATTTCGATA+CGG | 0.531451 | 2_4:+7905958 | None:intergenic |
GCAGTAAAGGTGGCCACAAA+GGG | 0.540437 | 2_4:+7906236 | None:intergenic |
ACATTCCAACCACTGGATGC+TGG | 0.540579 | 2_4:+7905842 | None:intergenic |
TGGATGCTGGCGAGATCTTG+AGG | 0.540737 | 2_4:+7905855 | None:intergenic |
GGAATCTTCTGCTTCTGACA+TGG | 0.544972 | 2_4:+7906314 | None:intergenic |
TCTCGCCAGCATCCAGTGGT+TGG | 0.552848 | 2_4:-7905847 | Msa0312750:CDS |
AGCAGTAAAGGTGGCCACAA+AGG | 0.557862 | 2_4:+7906235 | None:intergenic |
TCCAGTGGTTGGAATGTTCG+AGG | 0.560000 | 2_4:-7905836 | Msa0312750:CDS |
CCATCTGATAAGAATTCGGC+GGG | 0.562245 | 2_4:+7905785 | None:intergenic |
ATGGTCCCATTGTATGGCCG+CGG | 0.566563 | 2_4:-7906108 | Msa0312750:CDS |
GCCGAATTCTTATCAGATGG+TGG | 0.576950 | 2_4:-7905782 | Msa0312750:CDS |
AAGGGTGACTACCGGTTCGT+TGG | 0.577209 | 2_4:+7906254 | None:intergenic |
GCTGGCCTTGCATCTACAAG+TGG | 0.589809 | 2_4:-7906215 | Msa0312750:CDS |
GTCCCATTGTATGGCCGCGG+TGG | 0.589992 | 2_4:-7906105 | Msa0312750:CDS |
GCTTGAGCACCTGAAGCAGT+TGG | 0.591446 | 2_4:+7906024 | None:intergenic |
ATAATAGCTCTAGATTGAGA+AGG | 0.602529 | 2_4:-7905756 | Msa0312750:CDS |
TGGCCACAAAGGGTGACTAC+CGG | 0.604390 | 2_4:+7906246 | None:intergenic |
TGGAGCCACTTGTAGATGCA+AGG | 0.606645 | 2_4:+7906210 | None:intergenic |
CCCGCCGAATTCTTATCAGA+TGG | 0.609487 | 2_4:-7905785 | Msa0312750:CDS |
TGCAAGGCCAGCAGTAAAGG+TGG | 0.611126 | 2_4:+7906226 | None:intergenic |
CCGAATTCTTATCAGATGGT+GGG | 0.611382 | 2_4:-7905781 | Msa0312750:CDS |
TCTTTGCATACAGGACATTG+TGG | 0.614114 | 2_4:+7906150 | None:intergenic |
TTCCTCATACCAACAACAAG+AGG | 0.616354 | 2_4:-7905920 | Msa0312750:CDS |
GAGAATCATCACTTTGAACA+TGG | 0.619892 | 2_4:+7906190 | None:intergenic |
CCGTATCGAAATCCTTATCA+GGG | 0.628835 | 2_4:-7905958 | Msa0312750:CDS |
TCGGTGGAGCGTGGCCACCG+CGG | 0.635955 | 2_4:+7906091 | None:intergenic |
AAGATCTCGCCAGCATCCAG+TGG | 0.636201 | 2_4:-7905851 | Msa0312750:CDS |
TCTGATAAGAATTCGGCGGG+TGG | 0.643245 | 2_4:+7905788 | None:intergenic |
ACCATCTGATAAGAATTCGG+CGG | 0.653831 | 2_4:+7905784 | None:intergenic |
GCGAGATCTTGAGGTCGTTG+AGG | 0.655268 | 2_4:+7905864 | None:intergenic |
GCCATACAATGGGACCATTG+TGG | 0.655448 | 2_4:+7906113 | None:intergenic |
TCAGAAGCAGAAGATTCCAA+TGG | 0.671202 | 2_4:-7906309 | Msa0312750:CDS |
TCCTCATACCAACAACAAGA+GGG | 0.675909 | 2_4:-7905919 | Msa0312750:CDS |
AAATATATCACATACCACAA+TGG | 0.681589 | 2_4:-7906127 | Msa0312750:CDS |
GGTGGCCACGCTCCACCGAG+TGG | 0.693866 | 2_4:-7906087 | Msa0312750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GATATATTTTCTTTGCATAC+AGG | + | chr2_4:7905897-7905916 | None:intergenic | 25.0% |
! | AAATATATCACATACCACAA+TGG | - | chr2_4:7905908-7905927 | Msa0312750:CDS | 25.0% |
! | TTTAAATATTGTCCCTGATA+AGG | + | chr2_4:7906092-7906111 | None:intergenic | 25.0% |
! | TGGAATGGTTTTCAATTCAT+GGG | + | chr2_4:7905697-7905716 | None:intergenic | 30.0% |
! | TTGGAATGGTTTTCAATTCA+TGG | + | chr2_4:7905698-7905717 | None:intergenic | 30.0% |
!! | ATAATAGCTCTAGATTGAGA+AGG | - | chr2_4:7906279-7906298 | Msa0312750:CDS | 30.0% |
TTCTGACATGGAATTTGGAA+TGG | + | chr2_4:7905712-7905731 | None:intergenic | 35.0% | |
GTTGCAATCAAAACAACCAT+TGG | + | chr2_4:7905745-7905764 | None:intergenic | 35.0% | |
GAGAATCATCACTTTGAACA+TGG | + | chr2_4:7905848-7905867 | None:intergenic | 35.0% | |
GTTCAAAGTGATGATTCTCT+TGG | - | chr2_4:7905849-7905868 | Msa0312750:CDS | 35.0% | |
! | CAACAAGAAGATTTTCCACT+CGG | + | chr2_4:7905966-7905985 | None:intergenic | 35.0% |
ACTTCACAAATGCTTAGTCT+TGG | - | chr2_4:7906146-7906165 | Msa0312750:CDS | 35.0% | |
TCTGCTTCTGACATGGAATT+TGG | + | chr2_4:7905717-7905736 | None:intergenic | 40.0% | |
TCAGAAGCAGAAGATTCCAA+TGG | - | chr2_4:7905726-7905745 | Msa0312750:CDS | 40.0% | |
TCTTTGCATACAGGACATTG+TGG | + | chr2_4:7905888-7905907 | None:intergenic | 40.0% | |
TCCGTATCGAAATCCTTATC+AGG | - | chr2_4:7906076-7906095 | Msa0312750:CDS | 40.0% | |
CCCTGATAAGGATTTCGATA+CGG | + | chr2_4:7906080-7906099 | None:intergenic | 40.0% | |
CCGTATCGAAATCCTTATCA+GGG | - | chr2_4:7906077-7906096 | Msa0312750:CDS | 40.0% | |
TTCCTCATACCAACAACAAG+AGG | - | chr2_4:7906115-7906134 | Msa0312750:CDS | 40.0% | |
TCCTCATACCAACAACAAGA+GGG | - | chr2_4:7906116-7906135 | Msa0312750:CDS | 40.0% | |
! | TTCGAGGAGATGATTTTTGC+CGG | - | chr2_4:7906215-7906234 | Msa0312750:CDS | 40.0% |
! | ATGATTTTTGCCGGAGTAGT+CGG | - | chr2_4:7906224-7906243 | Msa0312750:CDS | 40.0% |
ACCATCTGATAAGAATTCGG+CGG | + | chr2_4:7906254-7906273 | None:intergenic | 40.0% | |
CCCACCATCTGATAAGAATT+CGG | + | chr2_4:7906257-7906276 | None:intergenic | 40.0% | |
CCGAATTCTTATCAGATGGT+GGG | - | chr2_4:7906254-7906273 | Msa0312750:CDS | 40.0% | |
GGAATCTTCTGCTTCTGACA+TGG | + | chr2_4:7905724-7905743 | None:intergenic | 45.0% | |
ACCACAATGGTCCCATTGTA+TGG | - | chr2_4:7905921-7905940 | Msa0312750:CDS | 45.0% | |
! | CAAGAAGATTTTCCACTCGG+TGG | + | chr2_4:7905963-7905982 | None:intergenic | 45.0% |
! | TTCAGGTGCTCAAGCTCTTT+TGG | - | chr2_4:7906019-7906038 | Msa0312750:CDS | 45.0% |
!! | ACCCTCTTGTTGTTGGTATG+AGG | + | chr2_4:7906120-7906139 | None:intergenic | 45.0% |
! | TAGCATCACCCTCTTGTTGT+TGG | + | chr2_4:7906127-7906146 | None:intergenic | 45.0% |
CCATCTGATAAGAATTCGGC+GGG | + | chr2_4:7906253-7906272 | None:intergenic | 45.0% | |
GCCGAATTCTTATCAGATGG+TGG | - | chr2_4:7906253-7906272 | Msa0312750:CDS | 45.0% | |
CTTAGACTTCGCCAACGAAC+CGG | - | chr2_4:7905770-7905789 | Msa0312750:CDS | 50.0% | |
GCAGTAAAGGTGGCCACAAA+GGG | + | chr2_4:7905802-7905821 | None:intergenic | 50.0% | |
AGCAGTAAAGGTGGCCACAA+AGG | + | chr2_4:7905803-7905822 | None:intergenic | 50.0% | |
TTTGTGGCCACCTTTACTGC+TGG | - | chr2_4:7905802-7905821 | Msa0312750:CDS | 50.0% | |
AGATGCAAGGCCAGCAGTAA+AGG | + | chr2_4:7905815-7905834 | None:intergenic | 50.0% | |
TGGAGCCACTTGTAGATGCA+AGG | + | chr2_4:7905828-7905847 | None:intergenic | 50.0% | |
GCCATACAATGGGACCATTG+TGG | + | chr2_4:7905925-7905944 | None:intergenic | 50.0% | |
ACATTCCAACCACTGGATGC+TGG | + | chr2_4:7906196-7906215 | None:intergenic | 50.0% | |
TCCAGTGGTTGGAATGTTCG+AGG | - | chr2_4:7906199-7906218 | Msa0312750:CDS | 50.0% | |
TCCTCGAACATTCCAACCAC+TGG | + | chr2_4:7906203-7906222 | None:intergenic | 50.0% | |
TCTGATAAGAATTCGGCGGG+TGG | + | chr2_4:7906250-7906269 | None:intergenic | 50.0% | |
CCCGCCGAATTCTTATCAGA+TGG | - | chr2_4:7906250-7906269 | Msa0312750:CDS | 50.0% | |
!! | AAGGGTGACTACCGGTTCGT+TGG | + | chr2_4:7905784-7905803 | None:intergenic | 55.0% |
GAACCGGTAGTCACCCTTTG+TGG | - | chr2_4:7905786-7905805 | Msa0312750:CDS | 55.0% | |
TGGCCACAAAGGGTGACTAC+CGG | + | chr2_4:7905792-7905811 | None:intergenic | 55.0% | |
TGCAAGGCCAGCAGTAAAGG+TGG | + | chr2_4:7905812-7905831 | None:intergenic | 55.0% | |
!! | GCTGGCCTTGCATCTACAAG+TGG | - | chr2_4:7905820-7905839 | Msa0312750:CDS | 55.0% |
ATGGTCCCATTGTATGGCCG+CGG | - | chr2_4:7905927-7905946 | Msa0312750:CDS | 55.0% | |
!! | ATTTTCCACTCGGTGGAGCG+TGG | + | chr2_4:7905956-7905975 | None:intergenic | 55.0% |
!! | CCTGAAGCAGTTGGTCTTGG+TGG | + | chr2_4:7906005-7906024 | None:intergenic | 55.0% |
CCACCAAGACCAACTGCTTC+AGG | - | chr2_4:7906002-7906021 | Msa0312750:CDS | 55.0% | |
! | GCACCTGAAGCAGTTGGTCT+TGG | + | chr2_4:7906008-7906027 | None:intergenic | 55.0% |
GCTTGAGCACCTGAAGCAGT+TGG | + | chr2_4:7906014-7906033 | None:intergenic | 55.0% | |
GCGAGATCTTGAGGTCGTTG+AGG | + | chr2_4:7906174-7906193 | None:intergenic | 55.0% | |
TGGATGCTGGCGAGATCTTG+AGG | + | chr2_4:7906183-7906202 | None:intergenic | 55.0% | |
AAGATCTCGCCAGCATCCAG+TGG | - | chr2_4:7906184-7906203 | Msa0312750:CDS | 55.0% | |
TCTCGCCAGCATCCAGTGGT+TGG | - | chr2_4:7906188-7906207 | Msa0312750:CDS | 60.0% | |
GTCCCATTGTATGGCCGCGG+TGG | - | chr2_4:7905930-7905949 | Msa0312750:CDS | 65.0% | |
GGCCACCGCGGCCATACAAT+GGG | + | chr2_4:7905935-7905954 | None:intergenic | 65.0% | |
TGGCCACCGCGGCCATACAA+TGG | + | chr2_4:7905936-7905955 | None:intergenic | 65.0% | |
TCGGTGGAGCGTGGCCACCG+CGG | + | chr2_4:7905947-7905966 | None:intergenic | 75.0% | |
GGTGGCCACGCTCCACCGAG+TGG | - | chr2_4:7905948-7905967 | Msa0312750:CDS | 75.0% | |
CGGCGGGTGGCCGACTACTC+CGG | + | chr2_4:7906237-7906256 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 7905672 | 7906385 | 7905672 | ID=Msa0312750;Name=Msa0312750 |
chr2_4 | mRNA | 7905672 | 7906385 | 7905672 | ID=Msa0312750-mRNA-1;Parent=Msa0312750;Name=Msa0312750-mRNA-1;_AED=0.20;_eAED=0.21;_QI=0|-1|0|1|-1|1|1|0|237 |
chr2_4 | exon | 7905672 | 7906385 | 7905672 | ID=Msa0312750-mRNA-1:exon:3115;Parent=Msa0312750-mRNA-1 |
chr2_4 | CDS | 7905672 | 7906385 | 7905672 | ID=Msa0312750-mRNA-1:cds;Parent=Msa0312750-mRNA-1 |
Gene Sequence |
Protein sequence |